Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ARID1A 8289 hgsc.bcm.edu hg19 1 27094294 27094294 + Missense_Mutation SNP C C G novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . ARID1A NM_006015 exon11 c.C3002G p.S1001C GTTCTTCTACTAC . 69.0 33.0 76.0 0.0 . 842 . . Atlas-SNP WDR65 149465 hgsc.bcm.edu hg19 1 43687775 43687775 + Splice_Site SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . WDR65 NM_001195831 exon15 c.2342-1G>A . TCTCCAGAATGTT . 182.0 34.0 192.0 0.0 . 76 . . Atlas-SNP LRRC41 10489 hgsc.bcm.edu hg19 1 46746117 46746117 + Silent SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . LRRC41 NM_006369 exon6 c.C1872T p.A624A AAAGGTGGCACTA . 308.0 65.0 309.0 0.0 . 74 . . Atlas-SNP EFCAB14 9813 hgsc.bcm.edu hg19 1 47154101 47154101 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . . NM_014774 exon7 c.A911T p.Q304L ACTCTCTGGGTAA . 130.0 21.0 131.0 0.0 . . . . Atlas-SNP GFI1 2672 hgsc.bcm.edu hg19 1 92946582 92946582 + Missense_Mutation SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 GFI1,mouth,carcinoma,0,1 GFI1 NM_005263 exon4 c.C362T p.P121L GAGTACGGTTTGA . 152.0 29.0 164.0 0.0 . 41 . . Atlas-SNP ARNT 405 hgsc.bcm.edu hg19 1 150788840 150788840 + Silent SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . ARNT NM_001668 exon19 c.A1845T p.S615S AGAAGCTGATGGC . 124.0 21.0 66.0 0.0 . 68 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152278842 152278842 + Silent SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . FLG NM_002016 exon3 c.A8520T p.T2840T ACGTGTTGTTCTG . 350.0 80.0 187.0 0.0 . 900 . . Atlas-SNP SH3YL1 26751 hgsc.bcm.edu hg19 2 234273 234273 + Splice_Site SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SH3YL1 NM_001159597 exon6 c.292-1G>A . TGATACCTAAAGT . 83.0 17.0 63.0 0.0 . 49 . . Atlas-SNP SMYD1 150572 hgsc.bcm.edu hg19 2 88396229 88396229 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SMYD1 NM_198274 exon6 c.T814A p.F272I TACTACTTTGACT . 119.0 20.0 132.0 0.0 . 95 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168103964 168103964 + Missense_Mutation SNP C C A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . XIRP2 NM_152381 exon9 c.C6062A p.A2021D CAAAAGCCCCCAA . 287.0 48.0 204.0 0.0 . 914 . . Atlas-SNP FASTKD2 22868 hgsc.bcm.edu hg19 2 207655393 207655393 + Missense_Mutation SNP G G T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . FASTKD2 NM_001136193 exon11 c.G1996T p.G666C GCAATGGGTTTTC . 65.0 13.0 53.0 0.0 . 49 . . Atlas-SNP CXCR2 3579 hgsc.bcm.edu hg19 2 218999787 218999787 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . CXCR2 NM_001168298 exon4 c.T263A p.L88Q ACCTGCTGAACCT . 190.0 76.0 188.0 0.0 . 54 . . Atlas-SNP ARPC2 10109 hgsc.bcm.edu hg19 2 219110174 219110174 + Missense_Mutation SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 ARPC2,NS,carcinoma,0,1 ARPC2 NM_005731 exon7 c.C581T p.T194I GCCACACAGCCCC . 83.0 4.0 74.0 0.0 . 25 . . Atlas-SNP CYP8B1 1582 hgsc.bcm.edu hg19 3 42916188 42916188 + Missense_Mutation SNP T T C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . CYP8B1 NM_004391 exon1 c.A1121G p.Y374C AACAGATACTCCT . 144.0 16.0 127.0 0.0 . 59 . . Atlas-SNP CCDC80 151887 hgsc.bcm.edu hg19 3 112357309 112357309 + Missense_Mutation SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . CCDC80 NM_199511 exon2 c.C1444T p.P482S GACCTGGCACCAC . 66.0 22.0 67.0 0.0 . 100 . . Atlas-SNP GRK7 131890 hgsc.bcm.edu hg19 3 141535712 141535712 + Silent SNP G G T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . GRK7 NM_139209 exon4 c.G1482T p.G494G TCGGGGGGTGGAA . 101.0 22.0 98.0 0.0 . 65 . . Atlas-SNP MED28 80306 hgsc.bcm.edu hg19 4 17625401 17625401 + Missense_Mutation SNP G G T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . MED28 NM_025205 exon4 c.G517T p.A173S ATCCCTGCACCTC . 171.0 57.0 265.0 0.0 . 16 . . Atlas-SNP KIAA1211 57482 hgsc.bcm.edu hg19 4 57179476 57179476 + Silent SNP C C A rs372203605 TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . KIAA1211 NM_020722 exon7 c.C468A p.A156A CAGTGCCGCCAAG . 71.0 15.0 84.0 0.0 . 178 . . Atlas-SNP AASDH 132949 hgsc.bcm.edu hg19 4 57219583 57219583 + Silent SNP T T C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . AASDH NM_181806 exon9 c.A1563G p.P521P TGTAAATGGTAGA . 66.0 16.0 104.0 0.0 . 101 . . Atlas-SNP RUFY3 22902 hgsc.bcm.edu hg19 4 71656987 71656987 + Silent SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . RUFY3 NM_014961 exon13 c.A1383T p.A461A TGCAGCAAATAAA . 501.0 108.0 580.0 1.0 . 61 . . Atlas-SNP CENPE 1062 hgsc.bcm.edu hg19 4 104084644 104084644 + Missense_Mutation SNP C C A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . CENPE NM_001813 exon17 c.G1714T p.D572Y CAAGATCTTGATT . 327.0 78.0 319.0 0.0 . 253 . . Atlas-SNP BBS12 166379 hgsc.bcm.edu hg19 4 123664496 123664496 + Silent SNP T T C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . BBS12 NM_001178007 exon3 c.T1449C p.D483D TGTAGATAGGAAC . 54.0 15.0 108.0 0.0 . 63 . . Atlas-SNP SLC6A19 340024 hgsc.bcm.edu hg19 5 1201802 1201802 + Missense_Mutation SNP G G T rs200291939 alternate_allele TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SLC6A19 NM_001003841 exon1 c.G37T p.A13S CTAGACGCCCGGA . 71.0 4.0 62.0 0.0 . 99 . G|0.999;A|0.001 Atlas-SNP RIOK2 55781 hgsc.bcm.edu hg19 5 96503531 96503531 + Missense_Mutation SNP T T C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . RIOK2 NM_001159749 exon8 c.A1037G p.E346G TAAACCTCTGCTT . 89.0 14.0 108.0 0.0 . 82 . . Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140562737 140562737 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . PCDHB16 NM_020957 exon1 c.T603A p.D201E GCTGGATCGGGAG . 80.0 25.0 78.0 0.0 . 159 . . Atlas-SNP SH3TC2 79628 hgsc.bcm.edu hg19 5 148388485 148388485 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SH3TC2 NM_024577 exon15 c.A3407T p.Q1136L CTAATCTGCAGCT . 153.0 61.0 131.0 0.0 . 178 . . Atlas-SNP C1QTNF2 114898 hgsc.bcm.edu hg19 5 159776435 159776435 + Missense_Mutation SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . C1QTNF2 NM_031908 exon3 c.G733A p.D245N TGATGTCGTAGGT . 77.0 19.0 67.0 0.0 . 33 . . Atlas-SNP FGF18 8817 hgsc.bcm.edu hg19 5 170876191 170876191 + Silent SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . FGF18 NM_003862 exon4 c.C291T p.V97V TCAAGTCCGGATC . 136.0 24.0 147.0 0.0 . 33 . . Atlas-SNP CAGE1 285782 hgsc.bcm.edu hg19 6 7334305 7334305 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . CAGE1 NM_001170692 exon12 c.A2388T p.K796N TAAATGTTTATTT . 76.0 32.0 49.0 0.0 . 165 . . Atlas-SNP BMP5 653 hgsc.bcm.edu hg19 6 55620351 55620351 + Missense_Mutation SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 BMP5,colon,carcinoma,+1,1 BMP5 NM_021073 exon7 c.C1345T p.R449C ATGAGCGTACTAC . 430.0 142.0 327.0 2.0 . 94 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 65707540 65707540 + Nonsense_Mutation SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . EYS NM_001142800 exon14 c.C2194T p.Q732X TGTCCTGTTCACA . 557.0 54.0 244.0 0.0 . 527 . . Atlas-SNP CASP8AP2 9994 hgsc.bcm.edu hg19 6 90573432 90573432 + Missense_Mutation SNP G G T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . CASP8AP2 NM_001137667 exon7 c.G2004T p.M668I TACTATGCATTGT . 89.0 30.0 93.0 0.0 . 108 . . Atlas-SNP NCOA7 135112 hgsc.bcm.edu hg19 6 126196071 126196071 + Missense_Mutation SNP A A C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . NCOA7 NM_001199619 exon5 c.A308C p.K103T AAGAGAAGAAGAT . 118.0 29.0 128.0 0.0 . 92 . . Atlas-SNP THEMIS 387357 hgsc.bcm.edu hg19 6 128134892 128134892 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . THEMIS NM_001010923 exon4 c.A894T p.Q298H AATGCTTTGGGGC . 103.0 24.0 120.0 0.0 . 168 . . Atlas-SNP SRCRB4D 136853 hgsc.bcm.edu hg19 7 76023205 76023205 + Silent SNP G G C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SRCRB4D NM_080744 exon8 c.C963G p.P321P AGGCTGGGGGCCA . 205.0 37.0 117.0 0.0 . 47 . . Atlas-SNP TCEA1 6917 hgsc.bcm.edu hg19 8 54882968 54882968 + Missense_Mutation SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . TCEA1 NM_006756 exon9 c.G881A p.C294Y TTTCCACATTCAT . 397.0 56.0 236.0 0.0 . 30 . . Atlas-SNP SLC26A7 115111 hgsc.bcm.edu hg19 8 92330525 92330525 + Missense_Mutation SNP G G T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SLC26A7 NM_134266 exon5 c.G559T p.A187S GGGGCTGCCACCC . 176.0 22.0 74.0 0.0 . 207 . . Atlas-SNP RMI1 80010 hgsc.bcm.edu hg19 9 86616085 86616085 + Missense_Mutation SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . RMI1 NM_024945 exon3 c.A184T p.R62W GATCTGAGGGATT . 123.0 37.0 146.0 0.0 . 50 . . Atlas-SNP PTGS1 5742 hgsc.bcm.edu hg19 9 125141054 125141054 + Missense_Mutation SNP T T G novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . PTGS1 NM_000962 exon5 c.T353G p.V118G CTGCAGTGCGCTC . 107.0 15.0 116.0 0.0 . 84 . . Atlas-SNP GLE1 2733 hgsc.bcm.edu hg19 9 131296078 131296078 + Silent SNP A A T rs369775688 alternate_allele TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . GLE1 NM_001499 exon11 c.A1494T p.A498A TGAAGCAGCATTC . 120.0 49.0 131.0 0.0 . 42 . . Atlas-SNP TPRN 286262 hgsc.bcm.edu hg19 9 140086995 140086995 + Missense_Mutation SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . TPRN NM_001128228 exon2 c.C1874T p.S625L TCCTCTGAGCCGG . 59.0 6.0 65.0 0.0 . 28 . . Atlas-SNP FBXO18 84893 hgsc.bcm.edu hg19 10 5945116 5945116 + Silent SNP G G C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . FBXO18 NM_032807 exon3 c.G288C p.P96P TAAACCGAGAACA . 114.0 37.0 76.0 0.0 . 108 . . Atlas-SNP COL13A1 1305 hgsc.bcm.edu hg19 10 71692351 71692351 + Silent SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . COL13A1 NM_001130103 exon30 c.A1686T p.P562P CAATCCAGGAGCA . 91.0 20.0 86.0 0.0 . 133 . . Atlas-SNP PNLIPRP3 119548 hgsc.bcm.edu hg19 10 118202641 118202641 + Silent SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . PNLIPRP3 NM_001011709 exon3 c.A279T p.I93I CAACATAGCTGGA . 88.0 15.0 90.0 0.0 . 101 . . Atlas-SNP ART5 116969 hgsc.bcm.edu hg19 11 3661593 3661593 + Silent SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . ART5 NM_053017 exon2 c.T66A p.A22A GGGAACAGCCTGG . 52.0 27.0 33.0 0.0 . 38 . . Atlas-SNP VWCE 220001 hgsc.bcm.edu hg19 11 61026465 61026465 + Silent SNP G G C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . VWCE NM_152718 exon20 c.C2550G p.T850T TGGAGGGGTCGAA . 50.0 18.0 49.0 0.0 . 84 . . Atlas-SNP RPS3 6188 hgsc.bcm.edu hg19 11 75115172 75115172 + Silent SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . RPS3 NM_001260506 exon5 c.G507A p.V169V GTTTGTGGATGGC . 177.0 19.0 98.0 0.0 . 20 . . Atlas-SNP MFAP5 8076 hgsc.bcm.edu hg19 12 8807070 8807070 + Silent SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . MFAP5 NM_003480 exon6 c.T180A p.A60A CAAAACAGCCAAA . 197.0 63.0 168.0 0.0 . 34 . . Atlas-SNP PDE3A 5139 hgsc.bcm.edu hg19 12 20792858 20792858 + Missense_Mutation SNP C C A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . PDE3A NM_000921 exon10 c.C2218A p.H740N TATTTTCATGCTT . 91.0 17.0 64.0 0.0 . 184 . . Atlas-SNP SLC38A1 81539 hgsc.bcm.edu hg19 12 46633498 46633498 + Missense_Mutation SNP T T C rs375543520 TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SLC38A1 NM_030674 exon3 c.A86G p.N29S AAATCATTGGAGT . 108.0 20.0 96.0 0.0 . 58 . . Atlas-SNP MAP3K12 7786 hgsc.bcm.edu hg19 12 53879187 53879187 + Missense_Mutation SNP G G T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . MAP3K12 NM_001193511 exon5 c.C894A p.S298R CTTGGTGCTCTTG . 97.0 39.0 74.0 0.0 . 160 . . Atlas-SNP G2E3 55632 hgsc.bcm.edu hg19 14 31077159 31077159 + Missense_Mutation SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . G2E3 NM_017769 exon12 c.C1384T p.P462S GGTGGTCCTTCAC . 178.0 19.0 89.0 0.0 . 82 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94088446 94088446 + Missense_Mutation SNP A A G rs375712940 TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . UNC79 NM_020818 exon30 c.A4336G p.I1446V CACTCTATACTCT . 103.0 24.0 85.0 0.0 . 366 . . Atlas-SNP DICER1 23405 hgsc.bcm.edu hg19 14 95557445 95557445 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . DICER1 NM_030621 exon27 c.A5529T p.E1843D AAACTTTTCTGCA . 124.0 27.0 103.0 0.0 . 181 . . Atlas-SNP BCL11B 64919 hgsc.bcm.edu hg19 14 99641808 99641808 + Nonsense_Mutation SNP G G C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . BCL11B NM_138576 exon4 c.C1365G p.Y455X GCACTTGTAGGGC . 44.0 5.0 47.0 0.0 . 108 . . Atlas-SNP AQR 9716 hgsc.bcm.edu hg19 15 35149307 35149307 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . AQR NM_014691 exon35 c.A4144T p.T1382S ATAAAGTCTAATT . 44.0 15.0 47.0 0.0 . 139 . . Atlas-SNP SKOR1 390598 hgsc.bcm.edu hg19 15 68126112 68126112 + Missense_Mutation SNP A A C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SKOR1 NM_001258024 exon15 c.A2545C p.K849Q TCCTGCAAGATGC . 69.0 17.0 57.0 0.0 . 144 . . Atlas-SNP FAM169B 283777 hgsc.bcm.edu hg19 15 99023922 99023922 + Missense_Mutation SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . FAM169B NM_182562 exon4 c.G91A p.D31N ACATGTCATCATC . 137.0 24.0 116.0 0.0 . 23 . . Atlas-SNP SRRM2 23524 hgsc.bcm.edu hg19 16 2812757 2812757 + Missense_Mutation SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SRRM2 NM_016333 exon11 c.C2228T p.S743F GCAGGTCCAATTC . 103.0 25.0 92.0 0.0 . 263 . . Atlas-SNP PMFBP1 83449 hgsc.bcm.edu hg19 16 72198720 72198720 + Missense_Mutation SNP C C A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . PMFBP1 NM_031293 exon3 c.G108T p.Q36H CTTCCTCTGTCTC . 62.0 8.0 50.0 0.0 . 101 . . Atlas-SNP CSHL1 1444 hgsc.bcm.edu hg19 17 61987890 61987890 + Missense_Mutation SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . CSHL1 NM_022579 exon3 c.T196A p.Y66N TGATATAGGCTTC . 97.0 44.0 94.0 0.0 . 42 . . Atlas-SNP SLC25A19 60386 hgsc.bcm.edu hg19 17 73273550 73273550 + Missense_Mutation SNP G G C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SLC25A19 NM_001126122 exon6 c.C658G p.L220V AAAGCAGGTTTTG . 59.0 20.0 66.0 0.0 . 25 . . Atlas-SNP SEC14L1 6397 hgsc.bcm.edu hg19 17 75186883 75186883 + Splice_Site SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SEC14L1 NM_001204408 exon6 c.64-2A>T . ATTTATAGGCCTA . 39.0 12.0 41.0 0.0 . 81 . . Atlas-SNP PCYT2 5833 hgsc.bcm.edu hg19 17 79865686 79865686 + Missense_Mutation SNP C C A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . PCYT2 NM_002861 exon5 c.G455T p.R152L AGCATGCGGCCCA . 54.0 8.0 55.0 0.0 . 23 . . Atlas-SNP SERPINB3 6317 hgsc.bcm.edu hg19 18 61323009 61323009 + Missense_Mutation SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SERPINB3 NM_006919 exon8 c.T1055A p.F352Y GATCCGAATCCTA . 128.0 58.0 137.0 0.0 . 90 . . Atlas-SNP SERPINB3 6317 hgsc.bcm.edu hg19 18 61323101 61323101 + Silent SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SERPINB3 NM_006919 exon8 c.C963T p.R321R GAGACCGCGGCTC . 133.0 32.0 109.0 0.0 . 90 . . Atlas-SNP SERPINB10 5273 hgsc.bcm.edu hg19 18 61584734 61584734 + Missense_Mutation SNP A A C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SERPINB10 NM_005024 exon2 c.A213C p.E71D CCCTGAAAGTGAA . 304.0 107.0 238.0 0.0 . 53 . . Atlas-SNP ARID3A 1820 hgsc.bcm.edu hg19 19 968403 968403 + Splice_Site SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 ARID3A,NS,carcinoma,0,1 ARID3A NM_005224 exon8 c.1496-2A>T . TCCCACAGCCTCC . 151.0 55.0 153.0 0.0 . 35 . . Atlas-SNP LMNB2 84823 hgsc.bcm.edu hg19 19 2435009 2435009 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . LMNB2 NM_032737 exon5 c.A845T p.Y282F GCCTGGTAGGTCT . 15.0 5.0 17.0 0.0 . 40 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9085994 9085994 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . MUC16 NM_024690 exon1 c.A5821T p.I1941F CTGGAATGGATGA . 69.0 35.0 60.0 0.0 . 4315 . . Atlas-SNP ZNF14 7561 hgsc.bcm.edu hg19 19 19823308 19823308 + Missense_Mutation SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . ZNF14 NM_021030 exon4 c.G782A p.S261N GGACAACTGAAAG . 109.0 26.0 66.0 0.0 . 89 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 31039817 31039817 + Silent SNP C C T rs202189721 TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . ZNF536 NM_014717 exon4 c.C3291T p.T1097T ATGGACCGGCCAC . 108.0 18.0 77.0 0.0 . 424 . C|0.999;T|0.001 Atlas-SNP CEP89 84902 hgsc.bcm.edu hg19 19 33378692 33378692 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . CEP89 NM_032816 exon17 c.A1931T p.N644I CGAATGTTGCTTT . 86.0 31.0 76.0 0.0 . 82 . . Atlas-SNP ZNF383 163087 hgsc.bcm.edu hg19 19 37734528 37734528 + Missense_Mutation SNP G G C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . ZNF383 NM_152604 exon5 c.G1390C p.D464H GGCTCGGATCTCA . 127.0 18.0 104.0 0.0 . 42 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38945876 38945876 + Missense_Mutation SNP G G C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . RYR1 NM_001042723 exon14 c.G1442C p.G481A CCTAGGGGATGCT . 67.0 25.0 91.0 0.0 . 708 . . Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 41021261 41021261 + Missense_Mutation SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 SPTBN4,NS,carcinoma,0,2 SPTBN4 NM_020971 exon15 c.G2809A p.V937I GGCCGCGTTCTGG . 105.0 20.0 64.0 0.0 . 213 . . Atlas-SNP ZNF576 79177 hgsc.bcm.edu hg19 19 44103150 44103150 + Missense_Mutation SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . ZNF576 NM_001145347 exon3 c.G253A p.A85T TCCAAAGCCCTAA . 128.0 36.0 73.0 0.0 . 11 . . Atlas-SNP MYH14 79784 hgsc.bcm.edu hg19 19 50789947 50789947 + Missense_Mutation SNP A A T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . MYH14 NM_001145809 exon34 c.A4748T p.K1583M TCGGCAAGAGCGT . 95.0 29.0 94.0 0.0 . 261 . . Atlas-SNP TMC4 147798 hgsc.bcm.edu hg19 19 54672012 54672012 + Silent SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . TMC4 NM_001145303 exon5 c.C700T p.L234L ATTCCAGGTAACC . 130.0 38.0 136.0 0.0 . 89 . . Atlas-SNP C20orf26 26074 hgsc.bcm.edu hg19 20 20257971 20257971 + Missense_Mutation SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . C20orf26 NM_015585 exon22 c.G2665A p.A889T GCGGACGCGCTAG . 105.0 21.0 101.0 0.0 . 188 . . Atlas-SNP NAPB 63908 hgsc.bcm.edu hg19 20 23360527 23360527 + Missense_Mutation SNP A A C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . NAPB NM_022080 exon9 c.T712G p.S238A CTCTTGAATCAGT . 447.0 108.0 350.0 0.0 . 22 . . Atlas-SNP CST5 1473 hgsc.bcm.edu hg19 20 23856826 23856826 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . CST5 NM_001900 exon3 c.A428T p.X143L GACCCCTAGACTT . 142.0 56.0 97.0 0.0 . 24 . . Atlas-SNP TTI1 9675 hgsc.bcm.edu hg19 20 36642105 36642105 + Missense_Mutation SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . TTI1 NM_014657 exon3 c.A114T p.Q38H CACAGCTTGTAGT . 188.0 55.0 109.0 0.0 . 104 . . Atlas-SNP RALGAPB 57148 hgsc.bcm.edu hg19 20 37117219 37117219 + Silent SNP T T G novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . RALGAPB NM_020336 exon2 c.T144G p.P48P TACCCCTTCAGTG . 179.0 41.0 92.0 0.0 . 134 . . Atlas-SNP ZNF334 55713 hgsc.bcm.edu hg19 20 45129982 45129982 + Missense_Mutation SNP G G A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 ZNF334,colon,carcinoma,0,2 ZNF334 NM_018102 exon5 c.C1996T p.R666C TGTGGCGAAATGT . 221.0 20.0 116.0 0.0 . 101 . . Atlas-SNP OGFR 11054 hgsc.bcm.edu hg19 20 61443964 61443964 + Missense_Mutation SNP G G C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . OGFR NM_007346 exon7 c.G997C p.E333Q GGGCCAGAGCATA . 113.0 45.0 70.0 0.0 . 63 . . Atlas-SNP SIK1 150094 hgsc.bcm.edu hg19 21 44837443 44837443 + Missense_Mutation SNP C C A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SIK1 NM_173354 exon13 c.G1956T p.E652D CACCTCCTCCAGC . 80.0 20.0 65.0 0.0 . 65 . . Atlas-SNP SMTN 6525 hgsc.bcm.edu hg19 22 31484509 31484509 + Missense_Mutation SNP C C T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . SMTN NM_001207018 exon3 c.C379T p.R127W CAGCAGCGGGAAG . 103.0 19.0 73.0 0.0 . 219 . . Atlas-SNP FBXO7 25793 hgsc.bcm.edu hg19 22 32881139 32881139 + Missense_Mutation SNP G G C novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 FBXO7_ENST00000382058,NS,carcinoma,0,3 FBXO7 NM_012179 exon4 c.G730C p.E244Q CTCTGCGAGGGCA . 151.0 25.0 112.0 0.0 . 131 . . Atlas-SNP USP9X 8239 hgsc.bcm.edu hg19 X 41069765 41069765 + Silent SNP T T A novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . USP9X NM_001039591 exon33 c.T5019A p.L1673L TAGGCTTTGGGGT . 178.0 55.0 108.0 0.0 . 385 . . Atlas-SNP PABPC5 140886 hgsc.bcm.edu hg19 X 90691012 90691012 + Missense_Mutation SNP G G T novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . PABPC5 NM_080832 exon2 c.G436T p.G146C TCTAAGGGTTATG . 110.0 75.0 76.0 0.0 . 92 . . Atlas-SNP USP48 84196 hgsc.bcm.edu hg19 1 22021689 22021689 + Frame_Shift_Del DEL T T - novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . USP48 NM_032236 exon23 c.2754delG p.K918fs . . 55.0 16.0 50.0 0.0 . 91 . . Atlas-Indel,Pindel FASN 2194 hgsc.bcm.edu hg19 17 80039126 80039126 + Frame_Shift_Del DEL A A - novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . FASN NM_004104 exon38 c.6510delC p.L2170fs . . 48.0 15.0 46.0 0.0 . 154 . . Atlas-Indel,Pindel KRTAP10-12 386685 hgsc.bcm.edu hg19 21 46117560 46117561 + Frame_Shift_Ins INS - - TT novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . KRTAP10-12 NM_198699 exon1 c.444_445insTT p.Q148fs . . 28.0 13.0 27.0 0.0 . 21 . . Atlas-INDEL MATN4 8785 hgsc.bcm.edu hg19 20 43929960 43929960 + Splice_Site DEL C C - novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . MATN4 NM_003833 exon5 c.766+2G>- . . . 112.0 26.0 48.0 0.0 . 57 . . Atlas-Indel,Pindel ARHGEF15 22899 hgsc.bcm.edu hg19 17 8216406 8216417 + In_Frame_Del DEL CGGTCACCCTGC CGGTCACCCTGC - novel TCGA-UB-A7ME-01A-11D-A33K-10 TCGA-UB-A7ME-10A-01D-A33K-10 CGGTCACCCTGC CGGTCACCCTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 346d5148-fd4f-46cc-b15c-c87013dce4fb a6a194d9-7740-4c01-b154-677cb12daba0 . ARHGEF15 NM_025014 exon3 c.767_778del p.256_260del . . 33.0 11.0 57.0 0.0 . 97 . . Atlas-Indel,Pindel