Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
VAMP3	9341	hgsc.bcm.edu	hg19	1	7837247	7837247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	VAMP3	NM_004781	exon3	c.G100A	p.D34N	AACGTGGACAAGG	.	41.0	9.0	112.0	0.0	.	14	.	.	Atlas-SNP
GMEB1	10691	hgsc.bcm.edu	hg19	1	29040743	29040743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GMEB1	NM_006582	exon10	c.T1180C	p.S394P	AGCCCTTCTCCTC	.	70.0	19.0	146.0	0.0	.	28	.	.	Atlas-SNP
EPHA10	284656	hgsc.bcm.edu	hg19	1	38185617	38185617	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	EPHA10	NM_001099439	exon14	c.T2526C	p.F842F	CTCCCCAAAGGCC	.	49.0	28.0	96.0	0.0	.	120	.	.	Atlas-SNP
MROH7	374977	hgsc.bcm.edu	hg19	1	55144944	55144944	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_001039464	exon12	c.A2058T	p.G686G	ATTTGGAGACTTC	.	71.0	19.0	209.0	0.0	.	.	.	.	Atlas-SNP
CRTC2	200186	hgsc.bcm.edu	hg19	1	153920974	153920974	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CRTC2	NM_181715	exon13	c.C1821T	p.H607H	GGAACAGTGGGTC	.	87.0	16.0	150.0	0.0	.	58	.	.	Atlas-SNP
LMNA	4000	hgsc.bcm.edu	hg19	1	156100406	156100406	+	Splice_Site	SNP	A	A	G	rs113610699	bycluster;alternate_allele	TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	LMNA	NM_170707	exon2	c.357-2A>G	.	TTCTTTAGCAATA	.	49.0	14.0	89.0	0.0	.	31	.	.	Atlas-SNP
BCAN	63827	hgsc.bcm.edu	hg19	1	156616630	156616630	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	BCAN	NM_198427	exon3	c.G129A	p.A43A	CGACGCGCCACTG	.	54.0	8.0	109.0	0.0	.	174	.	.	Atlas-SNP
HSPA6	3310	hgsc.bcm.edu	hg19	1	161494890	161494890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HSPA6	NM_002155	exon1	c.G442C	p.V148L	ATCACCGTGCCCG	.	64.0	13.0	108.0	0.0	.	53	.	.	Atlas-SNP
PPP1R15B	84919	hgsc.bcm.edu	hg19	1	204380351	204380351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PPP1R15B	NM_032833	exon1	c.G189T	p.W63C	TTTCGTCCAGTAA	.	79.0	10.0	87.0	0.0	.	67	.	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208219347	208219347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PLXNA2	NM_025179	exon18	c.A3371C	p.N1124T	ACATTGTTAAAGA	.	61.0	19.0	109.0	0.0	.	178	.	.	Atlas-SNP
RCOR3	55758	hgsc.bcm.edu	hg19	1	211451497	211451497	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RCOR3	NM_001136223	exon6	c.C555G	p.Y185X	ATATTACTATTCT	.	85.0	14.0	105.0	0.0	.	51	.	.	Atlas-SNP
HEATR1	55127	hgsc.bcm.edu	hg19	1	236751283	236751283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HEATR1	NM_018072	exon13	c.A1591G	p.I531V	CATCTATATTATC	.	122.0	20.0	239.0	0.0	.	197	.	.	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247014692	247014692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AHCTF1	NM_015446	exon33	c.A4643G	p.N1548S	GAAAGATTCCTAG	.	127.0	43.0	235.0	0.0	.	187	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15523423	15523423	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NBAS	NM_015909	exon29	c.G3276A	p.E1092E	ATGAGACTCACTG	.	142.0	25.0	218.0	0.0	.	246	.	.	Atlas-SNP
TTC27	55622	hgsc.bcm.edu	hg19	2	32891709	32891709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TTC27	NM_017735	exon7	c.G813T	p.L271F	TGCTTTGGGAAAA	.	37.0	8.0	91.0	0.0	.	71	.	.	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	hg19	2	43922295	43922295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PLEKHH2	NM_172069	exon6	c.A434G	p.N145S	TGGAGAATCAGAA	.	266.0	28.0	503.0	0.0	.	156	.	.	Atlas-SNP
MSH6	2956	hgsc.bcm.edu	hg19	2	48027047	48027047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MSH6	NM_000179	exon4	c.A1925G	p.Y642C	AAGAATATTTTAG	.	35.0	17.0	78.0	0.0	.	341	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84844030	84844030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DNAH6	NM_001370	exon23	c.A3496T	p.N1166Y	TTTCAAAACAATA	.	215.0	80.0	328.0	0.0	.	194	.	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125192135	125192135	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CNTNAP5	NM_130773	exon5	c.A604T	p.K202X	ACTCTCAAAGATG	.	65.0	28.0	161.0	0.0	.	405	.	.	Atlas-SNP
POTEE	445582	hgsc.bcm.edu	hg19	2	132020969	132020969	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	ENSG00000188219,NS,carcinoma,0,1	.	NM_001083538	exon15	c.A1941C	p.E647D	GCATGAAAATAGT	.	229.0	106.0	491.0	0.0	.	.	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160808016	160808016	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PLA2R1	NM_001195641	exon24	c.T3375A	p.T1125T	TTTGTAAGTTCTG	.	175.0	73.0	301.0	0.0	.	153	.	.	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	hg19	2	167319005	167319005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SCN7A	NM_002976	exon9	c.G977C	p.G326A	TTTATGCCAGCTT	.	49.0	26.0	108.0	0.0	.	410	.	.	Atlas-SNP
HOXD1	3231	hgsc.bcm.edu	hg19	2	177054752	177054752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HOXD1	NM_024501	exon2	c.A869G	p.E290G	AACGAGAAGGGCT	.	109.0	8.0	137.0	0.0	.	33	.	.	Atlas-SNP
FKBP7	51661	hgsc.bcm.edu	hg19	2	179343059	179343059	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	FKBP7	NM_181342	exon1	c.A168G	p.L56L	GGCATTTAGTAGG	.	123.0	9.0	147.0	0.0	.	16	.	.	Atlas-SNP
MSTN	2660	hgsc.bcm.edu	hg19	2	190924808	190924808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	MSTN,colon,carcinoma,0,1	MSTN	NM_005259	exon2	c.G727A	p.G243R	CTGGTCCTGGGAA	.	139.0	81.0	134.0	0.0	.	46	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220333678	220333678	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SPEG	NM_005876	exon12	c.C3399T	p.L1133L	GGGGCTCTATGCG	.	30.0	14.0	68.0	0.0	.	272	.	.	Atlas-SNP
PSMD1	5707	hgsc.bcm.edu	hg19	2	231936937	231936937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PSMD1	NM_002807	exon7	c.G689T	p.S230I	CTGTGAGTGATAT	.	80.0	11.0	189.0	0.0	.	77	.	.	Atlas-SNP
PSMD1	5707	hgsc.bcm.edu	hg19	2	231936939	231936939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PSMD1	NM_002807	exon7	c.G691T	p.D231Y	GTGAGTGATATCT	.	80.0	12.0	190.0	0.0	.	77	.	.	Atlas-SNP
JAGN1	84522	hgsc.bcm.edu	hg19	3	9934999	9934999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	JAGN1	NM_032492	exon2	c.T490C	p.Y164H	CAGTTGTACTACA	.	154.0	54.0	241.0	0.0	.	18	.	.	Atlas-SNP
TIMP4	7079	hgsc.bcm.edu	hg19	3	12195209	12195209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TIMP4	NM_003256	exon5	c.A481G	p.T161A	AGGTGGTGATCTA	.	44.0	12.0	56.0	0.0	.	21	.	.	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	hg19	3	39230338	39230338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	XIRP1	NM_001198621	exon2	c.T599C	p.L200P	CGGTCCAGCGGCC	.	26.0	11.0	54.0	0.0	.	173	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47098371	47098371	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SETD2	NM_014159	exon15	c.A6903G	p.T2301T	TGGACATGTCTGT	.	111.0	31.0	223.0	0.0	.	721	.	.	Atlas-SNP
DZIP3	9666	hgsc.bcm.edu	hg19	3	108347953	108347953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DZIP3	NM_014648	exon8	c.T626C	p.I209T	AAGAAATTGGAGA	.	81.0	15.0	141.0	0.0	.	111	.	.	Atlas-SNP
SLC15A2	6565	hgsc.bcm.edu	hg19	3	121641941	121641941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SLC15A2	NM_021082	exon10	c.C922A	p.P308T	TATATCCCATTGC	.	95.0	19.0	192.0	0.0	.	92	.	.	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	hg19	3	124732258	124732258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HEG1	NM_020733	exon6	c.C2165A	p.S722Y	GTTAAGGATACTG	.	57.0	19.0	112.0	0.0	.	109	.	.	Atlas-SNP
KBTBD12	166348	hgsc.bcm.edu	hg19	3	127702969	127702969	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KBTBD12	NM_207335	exon5	c.T1720C	p.L574L	GAAATATTGGAAC	.	94.0	18.0	177.0	0.0	.	41	.	.	Atlas-SNP
DNAJC19	131118	hgsc.bcm.edu	hg19	3	180704791	180704791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DNAJC19	NM_145261	exon4	c.A149G	p.Y50C	CCTCTATAATAGC	.	127.0	27.0	207.0	0.0	.	4	.	.	Atlas-SNP
KIAA0232	9778	hgsc.bcm.edu	hg19	4	6862633	6862633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KIAA0232	NM_014743	exon7	c.A524G	p.Y175C	GGTACTATGAAGC	.	85.0	11.0	176.0	0.0	.	102	.	.	Atlas-SNP
KLB	152831	hgsc.bcm.edu	hg19	4	39448206	39448206	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KLB	NM_175737	exon4	c.G1860T	p.L620L	GGCCCTGAGGTAC	.	22.0	16.0	35.0	0.0	.	95	.	.	Atlas-SNP
SOWAHB	345079	hgsc.bcm.edu	hg19	4	77817982	77817982	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_001029870	exon1	c.G1021C	p.E341Q	CGGGTTCCAAGGG	.	21.0	8.0	95.0	0.0	.	.	.	.	Atlas-SNP
NAA11	84779	hgsc.bcm.edu	hg19	4	80246710	80246710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NAA11	NM_032693	exon1	c.T322C	p.S108P	GCAGAGACACGTA	.	23.0	7.0	65.0	0.0	.	43	.	.	Atlas-SNP
UBE2D3	7323	hgsc.bcm.edu	hg19	4	103747665	103747665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	UBE2D3	NM_181886	exon2	c.A1G	p.M1V	GCGCCATAGTGTG	.	27.0	9.0	93.0	0.0	.	25	.	.	Atlas-SNP
CCRN4L	25819	hgsc.bcm.edu	hg19	4	139965791	139965791	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CCRN4L	NM_012118	exon3	c.461-2A>T	.	CTTTTCAGCTCTT	.	10.0	5.0	45.0	0.0	.	22	.	.	Atlas-SNP
NAA15	80155	hgsc.bcm.edu	hg19	4	140299908	140299908	+	Splice_Site	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NAA15	NM_057175	exon17	c.2057-2A>G	.	TTTTATAGAAAAG	.	67.0	22.0	206.0	0.0	.	88	.	.	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	hg19	4	177071048	177071048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	WDR17	NM_170710	exon15	c.C2060A	p.T687N	TAGTCACTCCTGT	.	126.0	45.0	379.0	0.0	.	198	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5462475	5462475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KIAA0947	NM_015325	exon13	c.G3028T	p.V1010L	GTGACTGTGTCAG	.	33.0	13.0	71.0	0.0	.	301	.	.	Atlas-SNP
ERAP1	51752	hgsc.bcm.edu	hg19	5	96116195	96116195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ERAP1	NM_001198541	exon18	c.T2602C	p.S868P	AAGATGAGCCAAG	.	21.0	9.0	63.0	0.0	.	59	.	.	Atlas-SNP
SEC24A	10802	hgsc.bcm.edu	hg19	5	133997259	133997259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SEC24A	NM_001252231	exon2	c.A548G	p.N183S	TTCAAAATAGCTT	.	52.0	13.0	71.0	0.0	.	77	.	.	Atlas-SNP
PCDHA6	56142	hgsc.bcm.edu	hg19	5	140209555	140209555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PCDHA6	NM_018909	exon1	c.T1879C	p.Y627H	GGGCTGTACACGG	.	29.0	9.0	62.0	0.0	.	442	.	.	Atlas-SNP
PCDHA8	56140	hgsc.bcm.edu	hg19	5	140222076	140222076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PCDHA8	NM_031856	exon1	c.G1170A	p.M390I	CCTGATGCCCCAT	.	85.0	39.0	218.0	0.0	.	366	.	.	Atlas-SNP
RNF145	153830	hgsc.bcm.edu	hg19	5	158588365	158588365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	RNF145,caecum,carcinoma,-1,1	RNF145	NM_001199380	exon10	c.G1625A	p.R542H	TCCCTGCGGAGAA	.	70.0	28.0	165.0	0.0	.	110	.	.	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	159992727	159992727	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ATP10B	NM_025153	exon26	c.A4119G	p.T1373T	CTGTCCTGTGATA	.	49.0	20.0	83.0	0.0	.	201	.	.	Atlas-SNP
RGS14	10636	hgsc.bcm.edu	hg19	5	176793252	176793252	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RGS14	NM_006480	exon3	c.A142T	p.S48C	CTCCCCAGTGGTC	.	41.0	10.0	67.0	0.0	.	34	.	.	Atlas-SNP
FLT4	2324	hgsc.bcm.edu	hg19	5	180048202	180048202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	FLT4	NM_182925	exon14	c.G2071A	p.V691M	CGCTCACGTTCAC	.	56.0	25.0	131.0	0.0	.	356	.	.	Atlas-SNP
DCDC2	51473	hgsc.bcm.edu	hg19	6	24205315	24205315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	DCDC2	NM_001195610	exon9	c.A938C	p.K313T	CCAGCTTTGAAAA	.	131.0	16.0	207.0	0.0	.	53	.	.	Atlas-SNP
ZKSCAN4	387032	hgsc.bcm.edu	hg19	6	28217606	28217606	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZKSCAN4	NM_019110	exon2	c.G430C	p.V144L	CACCAACGGGAAC	.	44.0	9.0	81.0	0.0	.	42	.	.	Atlas-SNP
OR5V1	81696	hgsc.bcm.edu	hg19	6	29323799	29323799	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	OR5V1	NM_030876	exon1	c.T174A	p.P58P	ATACATAGGTGTA	.	58.0	18.0	116.0	0.0	.	63	.	.	Atlas-SNP
OR2H1	26716	hgsc.bcm.edu	hg19	6	29430101	29430101	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	OR2H1	NM_030883	exon3	c.C555A	p.L185L	TCGACTCTCCTGT	.	80.0	15.0	152.0	0.0	.	38	.	.	Atlas-SNP
NRM	11270	hgsc.bcm.edu	hg19	6	30657906	30657906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NRM	NM_001270709	exon2	c.A248C	p.E83A	ACTCTTTCAGCTG	.	61.0	15.0	120.0	0.0	.	7	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32012931	32012931	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	TNXB_ENST00000375247,right_upper_lobe,carcinoma,0,3	TNXB	NM_019105	exon32	c.G10773T	p.T3591T	CCCGTTCGTGTCC	.	255.0	13.0	402.0	0.0	.	553	.	.	Atlas-SNP
OSTM1	28962	hgsc.bcm.edu	hg19	6	108372287	108372287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	OSTM1	NM_014028	exon4	c.T731C	p.L244P	TTCTCAAGTTCAT	.	103.0	14.0	264.0	0.0	.	22	.	.	Atlas-SNP
KIF25	3834	hgsc.bcm.edu	hg19	6	168445527	168445527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KIF25	NM_030615	exon9	c.G1006T	p.V336L	TTACTGGTGATTC	.	27.0	13.0	69.0	0.0	.	75	.	.	Atlas-SNP
AHR	196	hgsc.bcm.edu	hg19	7	17382597	17382597	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AHR	NM_001621	exon11	c.A2456C	p.N819T	ACATAAATAACAC	.	91.0	25.0	168.0	0.0	.	89	.	.	Atlas-SNP
AHR	196	hgsc.bcm.edu	hg19	7	17382606	17382606	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AHR	NM_001621	exon11	c.A2465C	p.Q822P	ACACTCAGACTAC	.	96.0	26.0	179.0	0.0	.	89	.	.	Atlas-SNP
AHR	196	hgsc.bcm.edu	hg19	7	17382611	17382611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AHR	NM_001621	exon11	c.A2470G	p.T824A	CAGACTACCACAC	.	100.0	26.0	184.0	0.0	.	89	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20691108	20691108	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	ABCB5,NS,carcinoma,0,1	ABCB5	NM_001163941	exon13	c.G1398T	p.V466V	TGGAGTGGTTAGT	.	58.0	24.0	118.0	0.0	.	357	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20691109	20691109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ABCB5	NM_001163941	exon13	c.G1399T	p.V467F	GGAGTGGTTAGTC	.	59.0	24.0	117.0	0.0	.	357	.	.	Atlas-SNP
NPSR1	387129	hgsc.bcm.edu	hg19	7	34867130	34867130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NPSR1	NM_207172	exon5	c.C596T	p.A199V	GCTGGGCCCTGTG	.	42.0	13.0	151.0	0.0	.	134	.	.	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	hg19	7	44578553	44578553	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NPC1L1	NM_001101648	exon2	c.T1443C	p.S481S	GTAGAGACTGGTA	.	45.0	20.0	144.0	0.0	.	141	.	.	Atlas-SNP
GRM3	2913	hgsc.bcm.edu	hg19	7	86493597	86493597	+	Splice_Site	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GRM3	NM_000840	exon6	c.2567-1G>T	.	TTTCCAGCCTCTG	.	75.0	15.0	119.0	0.0	.	237	.	.	Atlas-SNP
PEX1	5189	hgsc.bcm.edu	hg19	7	92122372	92122372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PEX1	NM_000466	exon20	c.T3102G	p.H1034Q	TGCTACATGCTGA	.	78.0	13.0	166.0	0.0	.	102	.	.	Atlas-SNP
PEX1	5189	hgsc.bcm.edu	hg19	7	92122387	92122387	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PEX1	NM_000466	exon20	c.T3087C	p.D1029D	GTCAACATCATCT	.	81.0	12.0	165.0	0.0	.	102	.	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	hg19	8	93023275	93023275	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RUNX1T1	NM_001198679	exon5	c.A690T	p.E230D	AGTAGCTTCTTGC	.	126.0	6.0	150.0	0.0	.	516	.	.	Atlas-SNP
NUDCD1	84955	hgsc.bcm.edu	hg19	8	110283345	110283345	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NUDCD1	NM_032869	exon8	c.T1188A	p.D396E	TTCTTTATCTGGA	.	243.0	24.0	158.0	0.0	.	58	.	.	Atlas-SNP
TNFRSF11B	4982	hgsc.bcm.edu	hg19	8	119936661	119936661	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TNFRSF11B	NM_002546	exon5	c.A1158C	p.L386F	CATTTCTAAAAAT	.	230.0	18.0	148.0	0.0	.	87	.	.	Atlas-SNP
TNFRSF11B	4982	hgsc.bcm.edu	hg19	8	119936888	119936888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	TNFRSF11B_ENST00000297350,NS,carcinoma,0,2	TNFRSF11B	NM_002546	exon5	c.G931C	p.D311H	CAATGTCTTCTGC	.	391.0	25.0	250.0	0.0	.	87	.	.	Atlas-SNP
MELK	9833	hgsc.bcm.edu	hg19	9	36677293	36677293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MELK	NM_014791	exon18	c.A1915C	p.K639Q	GTTTACAAAAGAT	.	22.0	17.0	70.0	0.0	.	74	.	.	Atlas-SNP
TNC	3371	hgsc.bcm.edu	hg19	9	117808755	117808755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TNC	NM_002160	exon17	c.G5059A	p.E1687K	CAATTTCGTATTC	.	97.0	76.0	334.0	0.0	.	282	.	.	Atlas-SNP
TTF1	7270	hgsc.bcm.edu	hg19	9	135277159	135277159	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TTF1	NM_007344	exon2	c.T1050A	p.P350P	GCTCTCAGGCATG	.	63.0	44.0	170.0	0.0	.	82	.	.	Atlas-SNP
C10orf113	387638	hgsc.bcm.edu	hg19	10	21435299	21435299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	C10orf113	NM_001177483	exon1	c.G139C	p.A47P	TTTCAGCCACACA	.	45.0	27.0	94.0	0.0	.	32	.	.	Atlas-SNP
WAC	51322	hgsc.bcm.edu	hg19	10	28884889	28884889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	WAC	NM_016628	exon7	c.T838C	p.F280L	AAATCATTTGATG	.	42.0	9.0	70.0	0.0	.	77	.	.	Atlas-SNP
PARG	8505	hgsc.bcm.edu	hg19	10	51027418	51027418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PARG	NM_003631	exon18	c.G2899T	p.A967S	GGTCAGCGGTCTC	.	86.0	30.0	152.0	0.0	.	46	.	.	Atlas-SNP
ZNF365	22891	hgsc.bcm.edu	hg19	10	64148261	64148261	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZNF365	NM_014951	exon3	c.C850G	p.L284V	GTAGAACTGGCGG	.	31.0	9.0	58.0	0.0	.	174	.	.	Atlas-SNP
AGAP11	119385	hgsc.bcm.edu	hg19	10	88768173	88768173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_133447	exon12	c.C164T	p.S55F	ATTCCTCCTCCAT	.	50.0	7.0	132.0	0.0	.	.	.	.	Atlas-SNP
PPAPDC1A	196051	hgsc.bcm.edu	hg19	10	122334705	122334705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	PPAPDC1A,colon,carcinoma,0,1	PPAPDC1A	NM_001030059	exon6	c.G508A	p.E170K	TTCACCGAGAGTG	.	57.0	6.0	159.0	0.0	.	48	.	.	Atlas-SNP
ZNF195	7748	hgsc.bcm.edu	hg19	11	3381365	3381365	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZNF195	NM_001130520	exon6	c.G873A	p.E291E	AATGTTCTCAGGT	.	81.0	16.0	142.0	0.0	.	77	.	.	Atlas-SNP
MRVI1	10335	hgsc.bcm.edu	hg19	11	10613101	10613101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MRVI1	NM_130385	exon18	c.T2234C	p.L745S	TTTTCCAAAAGTG	.	35.0	12.0	87.0	0.0	.	113	.	.	Atlas-SNP
CEP57	9702	hgsc.bcm.edu	hg19	11	95560987	95560987	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CEP57	NM_014679	exon9	c.A923C	p.Q308P	ATGTTCAGCTTGT	.	63.0	11.0	105.0	0.0	.	40	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105804564	105804564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GRIA4	NM_001077243	exon14	c.A2163T	p.K721N	GGGCAAATTTGCC	.	74.0	12.0	154.0	0.0	.	380	.	.	Atlas-SNP
TRAPPC4	51399	hgsc.bcm.edu	hg19	11	118889521	118889521	+	Missense_Mutation	SNP	G	G	A	rs372565482		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TRAPPC4	NM_016146	exon1	c.G16A	p.V6M	TTTAGTGTGTATG	.	61.0	12.0	91.0	0.0	.	8	.	.	Atlas-SNP
KLRC2	3822	hgsc.bcm.edu	hg19	12	10584707	10584707	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KLRC2	NM_002260	exon5	c.T582C	p.H194H	TTACTTATGTTTG	.	157.0	24.0	377.0	0.0	.	29	.	.	Atlas-SNP
C2CD5	9847	hgsc.bcm.edu	hg19	12	22610088	22610088	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_014802	exon23	c.A2541T	p.T847T	TTCAACTGTCATG	.	90.0	16.0	183.0	0.0	.	.	.	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26647155	26647155	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ITPR2	NM_002223	exon39	c.T5301C	p.N1767N	TCTGTCATTTTTG	.	22.0	10.0	91.0	0.0	.	270	.	.	Atlas-SNP
KRT18	3875	hgsc.bcm.edu	hg19	12	53345925	53345925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KRT18	NM_000224	exon6	c.T971A	p.L324Q	ACAGCCTGAGGGA	.	15.0	6.0	39.0	0.0	.	31	.	.	Atlas-SNP
MARS	4141	hgsc.bcm.edu	hg19	12	57910051	57910051	+	Silent	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MARS	NM_004990	exon20	c.A2487C	p.A829A	GCCAGCAGTTGTA	.	67.0	35.0	161.0	0.0	.	84	.	.	Atlas-SNP
PHLDA1	22822	hgsc.bcm.edu	hg19	12	76425490	76425490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PHLDA1	NM_007350	exon1	c.T32G	p.L11W	AGCTCCAAGAGGC	.	36.0	18.0	70.0	0.0	.	39	.	.	Atlas-SNP
ATP2B1	490	hgsc.bcm.edu	hg19	12	89992431	89992431	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ATP2B1	NM_001001323	exon20	c.A3441G	p.V1147V	ATTTGTTACATCA	.	50.0	5.0	106.0	0.0	.	191	.	.	Atlas-SNP
NR2C1	7181	hgsc.bcm.edu	hg19	12	95451647	95451647	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	NR2C1	NM_001032287	exon6	c.A552G	p.Q184Q	TTCACATTGGACA	.	75.0	20.0	135.0	0.0	.	56	.	.	Atlas-SNP
ANKS1B	56899	hgsc.bcm.edu	hg19	12	99638191	99638191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ANKS1B	NM_152788	exon14	c.T2348C	p.I783T	TTGTCAATCTGTA	.	61.0	9.0	104.0	0.0	.	180	.	.	Atlas-SNP
ANKS1B	56899	hgsc.bcm.edu	hg19	12	99793570	99793570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ANKS1B	NM_152788	exon12	c.T1595C	p.I532T	GACACAATGGATG	.	75.0	14.0	125.0	0.0	.	180	.	.	Atlas-SNP
ATP6V0A2	23545	hgsc.bcm.edu	hg19	12	124229432	124229432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ATP6V0A2	NM_012463	exon13	c.C1518A	p.D506E	CAGTGACAGCGTC	.	40.0	17.0	106.0	0.0	.	68	.	.	Atlas-SNP
RALGAPA1	253959	hgsc.bcm.edu	hg19	14	36041819	36041819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RALGAPA1	NM_194301	exon37	c.A5797G	p.I1933V	GATATATTACAAT	.	31.0	11.0	82.0	0.0	.	289	.	.	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	hg19	14	56078888	56078888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KTN1	NM_004986	exon2	c.A122G	p.Q41R	CAAAACAGAAAAG	.	98.0	33.0	212.0	0.0	.	147	.	.	Atlas-SNP
SNW1	22938	hgsc.bcm.edu	hg19	14	78198864	78198864	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SNW1	NM_012245	exon9	c.C855T	p.A285A	CAATTTGGCGAAA	.	35.0	17.0	106.0	0.0	.	44	.	.	Atlas-SNP
ZC3H14	79882	hgsc.bcm.edu	hg19	14	89034417	89034417	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZC3H14	NM_001160104	exon3	c.G114T	p.V38V	GATGGTGGCCAAC	.	51.0	11.0	158.0	0.0	.	71	.	.	Atlas-SNP
ZC3H14	79882	hgsc.bcm.edu	hg19	14	89034418	89034418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZC3H14	NM_001160104	exon3	c.G115T	p.A39S	ATGGTGGCCAACA	.	51.0	11.0	157.0	0.0	.	71	.	.	Atlas-SNP
EIF2AK4	440275	hgsc.bcm.edu	hg19	15	40321621	40321621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	EIF2AK4	NM_001013703	exon34	c.A4517G	p.N1506S	CCGATAATCTTGC	.	65.0	19.0	135.0	0.0	.	107	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48808530	48808530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	FBN1	NM_000138	exon11	c.A1177G	p.M393V	TTACCATAGGAAC	.	14.0	4.0	27.0	0.0	.	310	.	.	Atlas-SNP
PGPEP1L	145814	hgsc.bcm.edu	hg19	15	99512764	99512764	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PGPEP1L	NM_001102612	exon4	c.G261T	p.V87V	TAGGCACACGCCG	.	45.0	17.0	58.0	0.0	.	26	.	.	Atlas-SNP
MYH11	4629	hgsc.bcm.edu	hg19	16	15931900	15931900	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MYH11	NM_001040114	exon2	c.G210T	p.T70T	CCCAACCGTGACC	.	53.0	12.0	103.0	0.0	.	520	.	.	Atlas-SNP
FHOD1	29109	hgsc.bcm.edu	hg19	16	67267989	67267989	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	FHOD1	NM_013241	exon13	c.C1617A	p.L539L	AATAGAGAGCCTG	.	30.0	10.0	65.0	0.0	.	86	.	.	Atlas-SNP
AP1G1	164	hgsc.bcm.edu	hg19	16	71772938	71772938	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	AP1G1	NM_001030007	exon22	c.T2184G	p.N728K	GTTGGTATTTGAC	.	159.0	61.0	325.0	0.0	.	83	.	.	Atlas-SNP
OSGIN1	29948	hgsc.bcm.edu	hg19	16	83994227	83994227	+	Silent	SNP	C	C	T	rs201580564	alternate_allele	TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	OSGIN1	NM_182981	exon4	c.C258T	p.A86A	CGTGGCCCTGCTC	.	20.0	10.0	44.0	0.0	.	33	.	C|0.999;G|0.001	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84230532	84230532	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ADAD2	NM_139174	exon11	c.C1950T	p.G650G	GCAGGGCCTGGGG	.	58.0	16.0	97.0	0.0	.	46	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578410	7578410	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	TP53_ENST00000545858,NS,carcinoma,+1,1	TP53	NM_000546	exon5	c.A520T	p.R174W	AGCGCCTCACAAC	.	28.0	19.0	86.0	0.0	.	33396	.	.	Atlas-SNP
KRT12	3859	hgsc.bcm.edu	hg19	17	39017949	39017949	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	KRT12	NM_000223	exon8	c.C1449G	p.V483V	AGATGAGACCACC	.	91.0	21.0	204.0	0.0	.	53	.	.	Atlas-SNP
GPATCH8	23131	hgsc.bcm.edu	hg19	17	42476641	42476641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GPATCH8	NM_001002909	exon8	c.A2804G	p.Y935C	AGGCTATAGTCAT	.	101.0	17.0	181.0	0.0	.	114	.	.	Atlas-SNP
EFCAB13	124989	hgsc.bcm.edu	hg19	17	45518054	45518054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	.	NM_152347	exon25	c.A2896G	p.K966E	ATTGCTAAGCTTA	.	159.0	61.0	263.0	0.0	.	.	.	.	Atlas-SNP
SMARCD2	6603	hgsc.bcm.edu	hg19	17	61914891	61914891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	SMARCD2,NS,carcinoma,0,2	SMARCD2	NM_001098426	exon2	c.G311A	p.R104Q	CCAGGTCGAAGCG	.	39.0	17.0	70.0	0.0	.	29	.	.	Atlas-SNP
HGS	9146	hgsc.bcm.edu	hg19	17	79663472	79663472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HGS	NM_004712	exon16	c.G1479T	p.E493D	CCGGGAGAAGCTT	.	20.0	11.0	34.0	0.0	.	54	.	.	Atlas-SNP
HGS	9146	hgsc.bcm.edu	hg19	17	79663473	79663473	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	HGS	NM_004712	exon16	c.A1480T	p.K494X	CGGGAGAAGCTTC	.	20.0	10.0	33.0	0.0	.	54	.	.	Atlas-SNP
THEG	51298	hgsc.bcm.edu	hg19	19	367179	367179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	THEG	NM_016585	exon7	c.C799T	p.R267W	GGATCCGCGAGCT	.	40.0	11.0	127.0	0.0	.	58	.	.	Atlas-SNP
RAD23A	5886	hgsc.bcm.edu	hg19	19	13056794	13056794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RAD23A	NM_005053	exon1	c.A32C	p.Q11P	CGCTGCAGCAGCA	.	27.0	12.0	75.0	0.0	.	29	.	.	Atlas-SNP
RAD23A	5886	hgsc.bcm.edu	hg19	19	13056800	13056800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	RAD23A	NM_005053	exon1	c.A38C	p.Q13P	AGCAGCAGACCTT	.	24.0	11.0	72.0	0.0	.	29	.	.	Atlas-SNP
GDF15	9518	hgsc.bcm.edu	hg19	19	18499150	18499150	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	GDF15	NM_004864	exon2	c.C332G	p.P111R	CCCTTCCCGAGGG	.	57.0	11.0	118.0	0.0	.	31	.	.	Atlas-SNP
VN1R2	317701	hgsc.bcm.edu	hg19	19	53762414	53762414	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	VN1R2	NM_173856	exon1	c.T786A	p.Y262X	AGTATATGCAGCA	.	71.0	24.0	124.0	0.0	.	71	.	.	Atlas-SNP
VSTM1	284415	hgsc.bcm.edu	hg19	19	54554674	54554674	+	Silent	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	VSTM1	NM_198481	exon4	c.A384T	p.S128S	TTTCATTGAGGGA	.	61.0	26.0	150.0	0.0	.	30	.	.	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	hg19	19	55143685	55143685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	LILRB1	NM_001081637	exon5	c.C658A	p.L220I	CTGGTCCTAGGTG	.	24.0	9.0	105.0	0.0	.	140	.	.	Atlas-SNP
ZNF211	10520	hgsc.bcm.edu	hg19	19	58152694	58152694	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ZNF211	NM_001265597	exon5	c.T1035C	p.S345S	CCACAGTGAAGAA	.	17.0	6.0	59.0	0.0	.	78	.	.	Atlas-SNP
CSRP2BP	57325	hgsc.bcm.edu	hg19	20	18165423	18165423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CSRP2BP	NM_020536	exon9	c.A2162G	p.Y721C	TGATCTATCATCT	.	59.0	8.0	87.0	0.0	.	80	.	.	Atlas-SNP
ITSN1	6453	hgsc.bcm.edu	hg19	21	35134244	35134244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	ITSN1	NM_001001132	exon9	c.A742G	p.I248V	AGAACTATTCTTA	.	98.0	6.0	216.0	0.0	.	166	.	.	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	hg19	22	28378235	28378235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TTC28	NM_001145418	exon23	c.A7420G	p.R2474G	AAAATCTTCCTGG	.	60.0	6.0	125.0	0.0	.	84	.	.	Atlas-SNP
TTC38	55020	hgsc.bcm.edu	hg19	22	46671305	46671305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TTC38	NM_017931	exon5	c.A526G	p.I176V	CCTGACATCCCCC	.	28.0	11.0	90.0	0.0	.	40	.	.	Atlas-SNP
CCNB3	85417	hgsc.bcm.edu	hg19	X	50037976	50037976	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CCNB3	NM_033031	exon4	c.T318A	p.N106K	AAAGAATAAGCGG	.	31.0	16.0	107.0	0.0	.	367	.	.	Atlas-SNP
PCDH11Y	83259	hgsc.bcm.edu	hg19	Y	4968005	4968005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	PCDH11Y	NM_032972	exon2	c.A2386G	p.S796G	CTCTTCAGTGTTG	.	65.0	39.0	201.0	0.0	.	163	.	.	Atlas-SNP
LMBRD1	55788	hgsc.bcm.edu	hg19	6	70408942	70408944	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	LMBRD1	NM_018368	exon13	c.1330_1332del	p.444_444del	.	.	45.0	14.0	46.0	0.0	.	61	.	.	Atlas-Indel,Pindel
TNR	7143	hgsc.bcm.edu	hg19	1	175306706	175306707	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TNR	NM_003285	exon19	c.3492_3493insT	p.L1164fs	.	.	46.0	15.0	100.0	0.0	.	399	.	.	Atlas-Indel,Pindel
SEC24A	10802	hgsc.bcm.edu	hg19	5	134039534	134039535	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	SEC24A	NM_021982	exon16	c.2352_2353insT	p.G784fs	.	.	146.0	59.0	259.0	0.0	.	77	.	.	Atlas-Indel,Pindel
MELK	9833	hgsc.bcm.edu	hg19	9	36677291	36677291	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MELK	NM_014791	exon18	c.1912delT	p.Y638fs	.	.	22.0	16.0	70.0	0.0	.	74	.	.	Atlas-INDEL
CAND1	55832	hgsc.bcm.edu	hg19	12	67699601	67699602	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	CAND1	NM_018448	exon10	c.2153_2154insT	p.T718fs	.	.	54.0	32.0	108.0	0.0	.	100	.	.	Atlas-Indel,Pindel
TAAR5	9038	hgsc.bcm.edu	hg19	6	132910065	132910065	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TAAR5	NM_003967	exon1	c.762delG	p.L254fs	.	.	34.0	12.0	60.0	0.0	.	53	.	.	Atlas-INDEL
TAAR5	9038	hgsc.bcm.edu	hg19	6	132910065	132910066	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	TAAR5	NM_003967	exon1	c.761_762del	p.254_254del	.	.	35.0	10.0	62.0	0.0	.	53	.	.	Pindel
MELK	9833	hgsc.bcm.edu	hg19	9	36677295	36677295	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A7SK-01A-11D-A34Z-10	TCGA-RC-A7SK-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fd7293a-c256-40e8-a1b8-8f8b507f3441	2f8837d8-34ee-463b-bc83-36ab5067c3bd	.	MELK	NM_014791	exon18	c.1916delA	p.K639fs	.	.	23.0	15.0	68.0	0.0	.	74	.	.	Pindel