Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AMY2A	279	hgsc.bcm.edu	hg19	1	104160634	104160634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	AMY2A	NM_000699	exon2	c.G227T	p.R76I	GGGAAAGATACCA	.	307.0	107.0	414.0	0.0	.	36	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152499357	152499357	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	NEB	NM_004543	exon59	c.A8187G	p.K2729K	TTTATCTTTATCC	.	73.0	22.0	88.0	0.0	.	1697	.	.	Atlas-SNP
TBR1	10716	hgsc.bcm.edu	hg19	2	162273413	162273413	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	TBR1	NM_006593	exon1	c.C492T	p.S164S	CAACTCCTCGCCG	.	50.0	19.0	80.0	0.0	.	59	.	.	Atlas-SNP
HIBCH	26275	hgsc.bcm.edu	hg19	2	191110920	191110920	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	HIBCH	NM_014362	exon10	c.A769T	p.K257X	AAGACTTGTCTCG	.	95.0	40.0	97.0	0.0	.	28	.	.	Atlas-SNP
SETD5	55209	hgsc.bcm.edu	hg19	3	9517712	9517712	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	SETD5	NM_001080517	exon23	c.G4266A	p.V1422V	GGGTGTGCACCAG	.	46.0	19.0	49.0	0.0	.	210	.	.	Atlas-SNP
GPD1L	23171	hgsc.bcm.edu	hg19	3	32181733	32181733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	GPD1L	NM_015141	exon4	c.G380A	p.G127D	ACGAGGGCCCCGA	.	57.0	16.0	76.0	0.0	.	25	.	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	hg19	3	64666990	64666990	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ADAMTS9	NM_182920	exon3	c.A566T	p.Q189L	ATAGACTGTAGTG	.	156.0	74.0	176.0	0.0	.	206	.	.	Atlas-SNP
ZBTB38	253461	hgsc.bcm.edu	hg19	3	141163098	141163098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ZBTB38	NM_001080412	exon8	c.A1868G	p.N623S	CTGTAAACACCCT	.	52.0	16.0	72.0	0.0	.	92	.	.	Atlas-SNP
HS3ST1	9957	hgsc.bcm.edu	hg19	4	11401189	11401189	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	HS3ST1	NM_005114	exon2	c.A441G	p.R147R	CGGGTCTCGCAGG	.	46.0	20.0	59.0	0.0	.	41	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13700904	13700904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	DNAH5	NM_001369	exon78	c.A13568G	p.D4523G	ATGTCGTCCTTCA	.	88.0	31.0	118.0	0.0	.	868	.	.	Atlas-SNP
RAI14	26064	hgsc.bcm.edu	hg19	5	34823713	34823713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	RAI14	NM_001145525	exon17	c.A1775G	p.N592S	TTGAGAATATGAA	.	73.0	26.0	96.0	0.0	.	100	.	.	Atlas-SNP
HAPLN1	1404	hgsc.bcm.edu	hg19	5	82940454	82940454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	HAPLN1,right_upper_lobe,carcinoma,0,1	HAPLN1	NM_001884	exon4	c.G503T	p.G168V	TAGCGCCCCAGTC	.	44.0	20.0	68.0	0.0	.	79	.	.	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	hg19	5	140216124	140216124	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PCDHA7	NM_031852	exon1	c.C2156G	p.T719R	TGTACACGGCGTT	.	38.0	14.0	50.0	0.0	.	367	.	.	Atlas-SNP
PCDHGC3	5098	hgsc.bcm.edu	hg19	5	140856286	140856286	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PCDHGC3	NM_032402	exon1	c.C603A	p.A201A	GCGCGCCCTGGAC	.	26.0	11.0	34.0	0.0	.	173	.	.	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	hg19	6	154411035	154411035	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	OPRM1	NM_001145279	exon4	c.C644G	p.T215S	CCAGTACCCTGCC	.	63.0	30.0	64.0	0.0	.	241	.	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157150470	157150470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ARID1B	NM_017519	exon2	c.G1652A	p.G551D	CCTATGGCCCTCC	.	85.0	35.0	91.0	0.0	.	320	.	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	hg19	6	159655130	159655130	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	FNDC1	NM_032532	exon11	c.C3586T	p.L1196L	GACCTTCTGTCTT	.	38.0	19.0	64.0	0.0	.	250	.	.	Atlas-SNP
PTPN12	5782	hgsc.bcm.edu	hg19	7	77240326	77240326	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PTPN12	NM_002835	exon11	c.A902T	p.Y301F	AACTATATGAAAT	.	203.0	94.0	283.0	0.0	.	83	.	.	Atlas-SNP
RBM12B	389677	hgsc.bcm.edu	hg19	8	94748274	94748274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	RBM12B	NM_203390	exon3	c.A365G	p.Y122C	GAGCCATATCCAG	.	97.0	31.0	111.0	0.0	.	78	.	.	Atlas-SNP
ACAD8	27034	hgsc.bcm.edu	hg19	11	134131730	134131730	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ACAD8	NM_014384	exon9	c.T1038C	p.D346D	GAAGGATGCAGTG	.	25.0	13.0	61.0	0.0	.	33	.	.	Atlas-SNP
TAPBPL	55080	hgsc.bcm.edu	hg19	12	6570035	6570035	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	TAPBPL	NM_018009	exon6	c.T1222G	p.L408V	ACAGCCTTGGGAG	.	38.0	16.0	49.0	0.0	.	21	.	.	Atlas-SNP
R3HDM2	22864	hgsc.bcm.edu	hg19	12	57663679	57663679	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	R3HDM2	NM_014925	exon13	c.T1401C	p.L467L	GGAGATAAGTGGG	.	63.0	18.0	69.0	0.0	.	125	.	.	Atlas-SNP
PAH	5053	hgsc.bcm.edu	hg19	12	103237549	103237549	+	Silent	SNP	T	T	C	rs376480977	alternate_allele	TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PAH	NM_000277	exon11	c.A1074G	p.L358L	CTCTGATAAGCAG	.	51.0	17.0	51.0	0.0	.	77	.	.	Atlas-SNP
RPLP0	6175	hgsc.bcm.edu	hg19	12	120636498	120636498	+	Silent	SNP	G	G	A	rs138718343		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	RPLP0	NM_053275	exon6	c.C510T	p.S170S	GGCTTCGCTGGCT	.	52.0	16.0	68.0	0.0	.	27	.	G|1.000;A|0.000	Atlas-SNP
ALG5	29880	hgsc.bcm.edu	hg19	13	37524129	37524129	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	ALG5,NS,carcinoma,0,3	ALG5	NM_013338	exon10	c.C925T	p.R309X	AATATCGAAGTCG	.	31.0	16.0	52.0	0.0	.	28	.	.	Atlas-SNP
PCDH17	27253	hgsc.bcm.edu	hg19	13	58299074	58299074	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PCDH17	NM_001040429	exon4	c.G3126C	p.A1042A	CAAGGCGTGCATC	.	37.0	17.0	68.0	0.0	.	304	.	.	Atlas-SNP
TBC1D4	9882	hgsc.bcm.edu	hg19	13	75884197	75884197	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	TBC1D4	NM_014832	exon14	c.A2474T	p.D825V	GGGTCATCCTCCC	.	60.0	30.0	94.0	0.0	.	142	.	.	Atlas-SNP
MAGEL2	54551	hgsc.bcm.edu	hg19	15	23889381	23889381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MAGEL2	NM_019066	exon1	c.G3509T	p.R1170M	ATTCGCCTGTACT	.	27.0	12.0	50.0	0.0	.	108	.	.	Atlas-SNP
PLCB2	5330	hgsc.bcm.edu	hg19	15	40584571	40584571	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PLCB2	NM_004573	exon22	c.G2400A	p.E800E	CTTCATCTCCAGG	.	32.0	12.0	43.0	0.0	.	177	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577509	7577509	+	Missense_Mutation	SNP	C	C	T	rs121912652		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	TP53_ENST00000455263,brain,glioma,0,1	TP53	NM_000546	exon7	c.G772A	p.E258K	AGTCTTCCAGTGT	.	24.0	18.0	67.0	1.0	.	33396	.	.	Atlas-SNP
MRPL45	84311	hgsc.bcm.edu	hg19	17	36478418	36478418	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MRPL45	NM_032351	exon8	c.G861C	p.L287L	TCAGCTGAAACCA	.	41.0	20.0	51.0	0.0	.	27	.	.	Atlas-SNP
CISD3	284106	hgsc.bcm.edu	hg19	17	36887631	36887631	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	CISD3	NM_001136498	exon3	c.A143C	p.K48T	CCATCAAGGTGGA	.	22.0	11.0	38.0	0.0	.	12	.	.	Atlas-SNP
FAM104A	84923	hgsc.bcm.edu	hg19	17	71208818	71208818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	FAM104A	NM_001098832	exon3	c.C383T	p.A128V	CCCACCGCGCAGA	.	88.0	29.0	105.0	0.0	.	15	.	.	Atlas-SNP
EXOC7	23265	hgsc.bcm.edu	hg19	17	74085293	74085293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	EXOC7	NM_001145297	exon9	c.A1163T	p.E388V	TGGTGCTCGGGGA	.	35.0	16.0	40.0	0.0	.	47	.	.	Atlas-SNP
MIB1	57534	hgsc.bcm.edu	hg19	18	19359600	19359600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MIB1	NM_020774	exon6	c.A862T	p.I288F	TGTGGCATTGATG	.	149.0	54.0	180.0	0.0	.	87	.	.	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	hg19	18	63526260	63526260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	CDH7	NM_004361	exon9	c.G1472T	p.C491F	CCGTCTGTGAAAA	.	127.0	49.0	164.0	0.0	.	362	.	.	Atlas-SNP
SIRT2	22933	hgsc.bcm.edu	hg19	19	39374291	39374291	+	Missense_Mutation	SNP	C	C	T	rs200953200		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	SIRT2	NM_012237	exon9	c.G607A	p.E203K	GGTATTCGTGCCG	.	36.0	15.0	64.0	0.0	.	29	.	.	Atlas-SNP
PLD3	23646	hgsc.bcm.edu	hg19	19	40872766	40872766	+	Silent	SNP	C	C	T	rs375652785		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PLD3	NM_012268	exon5	c.C189T	p.G63G	ATACGGCGACTTG	.	33.0	16.0	49.0	0.0	.	71	.	.	Atlas-SNP
CEACAM8	1088	hgsc.bcm.edu	hg19	19	43098033	43098033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	CEACAM8	NM_001816	exon2	c.G84T	p.W28C	CGGGTTCCAGAAG	.	44.0	19.0	42.0	0.0	.	44	.	.	Atlas-SNP
PSG9	5678	hgsc.bcm.edu	hg19	19	43762554	43762554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	PSG9	NM_002784	exon5	c.A1043G	p.E348G	AGGTTTTCTCCTG	.	20.0	13.0	32.0	0.0	.	77	.	.	Atlas-SNP
ZNF677	342926	hgsc.bcm.edu	hg19	19	53740390	53740390	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	ZNF677	NM_182609	exon5	c.C1590G	p.L530L	TCTAGTGAGGTTT	.	157.0	68.0	229.0	0.0	.	94	.	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	hg19	19	54307234	54307234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	NLRP12	NM_144687	exon6	c.T2557A	p.C853S	CTGGGTGCCTCAG	.	30.0	10.0	50.0	0.0	.	236	.	.	Atlas-SNP
TCF15	6939	hgsc.bcm.edu	hg19	20	585251	585251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	TCF15	NM_004609	exon2	c.G584T	p.R195L	GGCCCTCGAAGGG	.	80.0	36.0	82.0	0.0	.	6	.	.	Atlas-SNP
SLC4A11	83959	hgsc.bcm.edu	hg19	20	3209657	3209657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	SLC4A11	NM_001174090	exon17	c.G2148T	p.R716S	CACCAGCCTGCAG	.	21.0	10.0	18.0	0.0	.	188	.	.	Atlas-SNP
AAR2	25980	hgsc.bcm.edu	hg19	20	34828481	34828481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	.	NM_001271874	exon2	c.G691A	p.D231N	AGCATGGACCTGA	.	40.0	13.0	55.0	0.0	.	.	.	.	Atlas-SNP
NLGN3	54413	hgsc.bcm.edu	hg19	X	70389592	70389592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	NLGN3	NM_181303	exon8	c.A2192G	p.Y731C	TCTACTACCGTAA	.	23.0	20.0	36.0	0.0	.	159	.	.	Atlas-SNP
MAGEC3	139081	hgsc.bcm.edu	hg19	X	140953292	140953292	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MAGEC3	NM_138702	exon2	c.C159T	p.A53A	TTCTGCCTTTCAT	.	30.0	23.0	59.0	0.0	.	228	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12419	12419	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	.	ENST00000361567	exon1	c.A83T	p.K28M	CTAACAAAAAAAA	.	119.0	107.0	201.0	1.0	.	.	.	.	Atlas-SNP
MTSS1	9788	hgsc.bcm.edu	hg19	8	125565827	125565828	+	In_Frame_Ins	INS	-	-	TAT	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MTSS1	NM_014751	exon14	c.1674_1675insATA	p.Y558delinsX	.	.	96.0	33.0	121.0	0.0	.	79	.	.	Atlas-Indel,Pindel
CAPN3	825	hgsc.bcm.edu	hg19	15	42698136	42698151	+	Frame_Shift_Del	DEL	ACCAAGGTAGGTGTGT	ACCAAGGTAGGTGTGT	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	ACCAAGGTAGGTGTGT	ACCAAGGTAGGTGTGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	CAPN3	NM_000070	exon15	c.1794_1800del	p.598_600del	.	.	57.0	17.0	148.0	0.0	.	172	.	.	Atlas-Indel,Pindel
MLL2	8085	hgsc.bcm.edu	hg19	12	49425062	49425062	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	MLL2	NM_003482	exon39	c.13427delC	p.T4476fs	.	.	40.0	20.0	53.0	0.0	.	1173	.	.	Atlas-Indel,Pindel
CCDC73	493860	hgsc.bcm.edu	hg19	11	32657339	32657339	+	In_Frame_Del	DEL	T	T	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	CCDC73	NM_001008391	exon14	c.1089delA	p.X363X	.	.	67.0	38.0	118.0	0.0	.	136	.	.	Atlas-Indel,Pindel
BBX	56987	hgsc.bcm.edu	hg19	3	107491784	107491817	+	Frame_Shift_Del	DEL	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	TTTCCTGATTTTTCTTATTCTGCCAGTAGCAAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	BBX	NM_001142568	exon11	c.1215_1248del	p.405_416del	.	.	69.0	19.0	129.0	0.0	.	156	.	.	Pindel
FMR1	2332	hgsc.bcm.edu	hg19	X	147014260	147014260	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A7SB-01A-21D-A34Z-10	TCGA-RC-A7SB-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	906caed8-06ec-4a56-b592-ea4c8715c043	071958a4-a5e0-4313-ada8-998353863ae3	.	FMR1	NM_002024	exon9	c.857delT	p.I286fs	.	.	137.0	63.0	171.0	0.0	.	93	.	.	Pindel