Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PER3 8863 hgsc.bcm.edu hg19 1 7887481 7887481 + Missense_Mutation SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . PER3 NM_016831 exon17 c.G2468A p.G823D CGGAAGGCCTGCA . 100.0 38.0 101.0 0.0 . 95 . . Atlas-SNP EIF4G3 8672 hgsc.bcm.edu hg19 1 21276594 21276594 + Missense_Mutation SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . EIF4G3 NM_001198803 exon13 c.G590A p.S197N ACCTGGCTGGGCA . 57.0 14.0 27.0 0.0 . 300 . . Atlas-SNP MPL 4352 hgsc.bcm.edu hg19 1 43805039 43805039 + Silent SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . MPL NM_005373 exon4 c.T489C p.D163D CAGTGATTTCCTG . 145.0 41.0 105.0 0.0 . 651 . . Atlas-SNP NRD1 4898 hgsc.bcm.edu hg19 1 52269532 52269532 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . NRD1 NM_002525 exon22 c.A2471G p.E824G CCATGTTCTCCAG . 81.0 28.0 100.0 0.0 . 89 . . Atlas-SNP ZFYVE9 9372 hgsc.bcm.edu hg19 1 52732378 52732378 + Missense_Mutation SNP A A C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ZFYVE9 NM_004799 exon6 c.A2330C p.N777T ACCCTAACAATCC . 62.0 9.0 45.0 0.0 . 131 . . Atlas-SNP ARHGEF11 9826 hgsc.bcm.edu hg19 1 156917232 156917232 + Silent SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ARHGEF11 NM_198236 exon26 c.G2352A p.V784V TTCAGTCACAAAC . 47.0 22.0 36.0 0.0 . 168 . . Atlas-SNP PYHIN1 149628 hgsc.bcm.edu hg19 1 158913594 158913594 + Missense_Mutation SNP G G T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . PYHIN1 NM_152501 exon6 c.G1017T p.R339S AAATAGGAAGACG . 183.0 29.0 177.0 0.0 . 208 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237693789 237693789 + Missense_Mutation SNP A A G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . RYR2 NM_001035 exon25 c.A2885G p.K962R AGGTGAAAAAAAT . 68.0 15.0 59.0 0.0 . 1273 . . Atlas-SNP ZAP70 7535 hgsc.bcm.edu hg19 2 98340508 98340508 + Missense_Mutation SNP C C A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ZAP70 NM_001079 exon3 c.C9A p.D3E GCCAGACCCCGCG . 20.0 14.0 23.0 0.0 . 77 . . Atlas-SNP FN1 2335 hgsc.bcm.edu hg19 2 216261911 216261911 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . FN1 NM_212476 exon23 c.A3553G p.N1185D CAGGGTTTGCCTC . 49.0 8.0 61.0 0.0 . 521 . . Atlas-SNP STK25 10494 hgsc.bcm.edu hg19 2 242439594 242439594 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . STK25 NM_006374 exon5 c.A421G p.I141V CTTTGATGTCTCG . 64.0 20.0 85.0 0.0 . 32 . . Atlas-SNP UBA7 7318 hgsc.bcm.edu hg19 3 49848783 49848783 + Missense_Mutation SNP C C G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . UBA7 NM_003335 exon9 c.G1045C p.V349L GGGCGACTGTCCG . 81.0 38.0 80.0 0.0 . 64 . . Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121215700 121215700 + Missense_Mutation SNP G G T rs373455498 alternate_allele TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . POLQ NM_199420 exon14 c.C2233A p.R745S GCCCACGATTGCA . 59.0 24.0 63.0 0.0 . 273 . . Atlas-SNP STAG1 10274 hgsc.bcm.edu hg19 3 136057110 136057110 + Missense_Mutation SNP T T G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . STAG1 NM_005862 exon34 c.A3763C p.M1255L TAGGCATTCCAAA . 144.0 29.0 128.0 0.0 . 135 . . Atlas-SNP ANKUB1 389161 hgsc.bcm.edu hg19 3 149485434 149485434 + Missense_Mutation SNP A A G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ANKUB1 NM_001144960 exon5 c.T1015C p.F339L CCCCAAAGACCCT . 122.0 20.0 102.0 0.0 . 27 . . Atlas-SNP IL12A 3592 hgsc.bcm.edu hg19 3 159711492 159711492 + Missense_Mutation SNP T T A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . IL12A NM_000882 exon6 c.T467A p.L156Q AGGCCCTGTGCCT . 125.0 5.0 118.0 0.0 . 23 . . Atlas-SNP PHC3 80012 hgsc.bcm.edu hg19 3 169867033 169867033 + Splice_Site SNP C C G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . PHC3 NM_024947 exon6 c.415-1G>C . GTTGATCTAAGGA . 25.0 9.0 39.0 0.0 . 113 . . Atlas-SNP LRRC15 131578 hgsc.bcm.edu hg19 3 194080170 194080170 + Missense_Mutation SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . LRRC15 NM_001135057 exon3 c.G1621A p.A541T TCTGGGCCTGGGT . 76.0 32.0 81.0 0.0 . 137 . . Atlas-SNP SHROOM3 57619 hgsc.bcm.edu hg19 4 77660340 77660340 + Silent SNP A A C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . SHROOM3 NM_020859 exon5 c.A1014C p.S338S AGCCTCAGCAAAT . 43.0 10.0 67.0 0.0 . 134 . . Atlas-SNP COPS4 51138 hgsc.bcm.edu hg19 4 83970469 83970469 + Missense_Mutation SNP A A T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . COPS4 NM_016129 exon3 c.A305T p.Q102L AGGAGCAGGTAAA . 49.0 12.0 59.0 0.0 . 31 . . Atlas-SNP PPP3CA 5530 hgsc.bcm.edu hg19 4 102117189 102117189 + Missense_Mutation SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . PPP3CA NM_000944 exon2 c.C143T p.A48V AGATGCGCCTTTA . 96.0 25.0 101.0 0.0 . 51 . . Atlas-SNP NDST3 9348 hgsc.bcm.edu hg19 4 119154228 119154228 + Missense_Mutation SNP C C G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . NDST3 NM_004784 exon9 c.C1881G p.S627R CCCCAGCCCAAAA . 80.0 27.0 119.0 0.0 . 107 . . Atlas-SNP ARHGAP10 79658 hgsc.bcm.edu hg19 4 148984418 148984418 + Missense_Mutation SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ARHGAP10 NM_024605 exon21 c.C2147T p.P716L TTTCTCCTCCTGC . 65.0 16.0 77.0 0.0 . 92 . . Atlas-SNP ADAMTS16 170690 hgsc.bcm.edu hg19 5 5200316 5200316 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ADAMTS16 NM_139056 exon9 c.T1385C p.L462S CTACATTGGCAGG . 92.0 24.0 71.0 0.0 . 543 . . Atlas-SNP SEMA6A 57556 hgsc.bcm.edu hg19 5 115782757 115782757 + Missense_Mutation SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . SEMA6A NM_020796 exon19 c.C2645T p.P882L CGCTGTGGAACTT . 110.0 36.0 129.0 0.0 . 93 . . Atlas-SNP ZNF454 285676 hgsc.bcm.edu hg19 5 178391941 178391941 + Missense_Mutation SNP A A G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ZNF454 NM_001178089 exon5 c.A536G p.E179G CCTTTGAGTGTAG . 87.0 10.0 78.0 0.0 . 99 . . Atlas-SNP LGSN 51557 hgsc.bcm.edu hg19 6 63990999 63990999 + Missense_Mutation SNP A A C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . LGSN NM_016571 exon4 c.T457G p.L153V TTGATAACTCTGG . 135.0 19.0 124.0 0.0 . 82 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75861697 75861697 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . COL12A1 NM_004370 exon20 c.A3886G p.M1296V GTCTCATGCCAGC . 112.0 37.0 116.0 0.0 . 385 . . Atlas-SNP SNAP91 9892 hgsc.bcm.edu hg19 6 84270639 84270639 + Missense_Mutation SNP C C G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . SNAP91 NM_001242792 exon26 c.G2470C p.V824L GAGGAACTGAACT . 124.0 40.0 120.0 0.0 . 199 . . Atlas-SNP SOBP 55084 hgsc.bcm.edu hg19 6 107956286 107956286 + Silent SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . SOBP NM_018013 exon6 c.G2238A p.P746P GCCGCCGCCGCCG . 38.0 12.0 39.0 0.0 . 53 . . Atlas-SNP FAM184A 79632 hgsc.bcm.edu hg19 6 119338099 119338099 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . FAM184A NM_024581 exon5 c.A1343G p.E448G TTTGCTTCATTTA . 292.0 103.0 310.0 0.0 . 109 . . Atlas-SNP OPRM1 4988 hgsc.bcm.edu hg19 6 154414480 154414480 + Missense_Mutation SNP G G C rs200463796 alternate_allele TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 OPRM1,NS,carcinoma,0,1 OPRM1 NM_001008505 exon4 c.G1240C p.G414R CTGCAAGGACCTC . 84.0 31.0 109.0 0.0 . 241 . . Atlas-SNP RNF216 54476 hgsc.bcm.edu hg19 7 5754691 5754691 + Missense_Mutation SNP G G C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . RNF216 NM_207111 exon11 c.C1826G p.S609C TTTCCAGATCCAA . 62.0 20.0 54.0 0.0 . 71 . . Atlas-SNP VWDE 221806 hgsc.bcm.edu hg19 7 12414692 12414692 + Missense_Mutation SNP G G T rs375551327 TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . VWDE NM_001135924 exon8 c.C1186A p.Q396K TTGGTTGCACTAC . 131.0 32.0 106.0 0.0 . 123 . . Atlas-SNP ZPBP 11055 hgsc.bcm.edu hg19 7 49977181 49977181 + Silent SNP T T A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ZPBP NM_007009 exon8 c.A999T p.G333G ATGAATTCCATCA . 69.0 14.0 64.0 0.0 . 65 . . Atlas-SNP CCDC146 57639 hgsc.bcm.edu hg19 7 76908085 76908085 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . CCDC146 NM_020879 exon12 c.T1457C p.I486T CCAACATTGTTAA . 149.0 55.0 119.0 0.0 . 87 . . Atlas-SNP TMEM229A 730130 hgsc.bcm.edu hg19 7 123672011 123672011 + Missense_Mutation SNP G G C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . TMEM229A NM_001136002 exon1 c.C1047G p.I349M CAGGGTGATGAGG . 54.0 13.0 37.0 0.0 . 31 . . Atlas-SNP RP1L1 94137 hgsc.bcm.edu hg19 8 10466938 10466938 + Missense_Mutation SNP G G T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . RP1L1 NM_178857 exon4 c.C4670A p.A1557E TCGGCCGCCATCT . 57.0 4.0 49.0 0.0 . 453 . . Atlas-SNP SGCZ 137868 hgsc.bcm.edu hg19 8 14181674 14181674 + Nonsense_Mutation SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 SGCZ,colon,carcinoma,0,1 SGCZ NM_139167 exon3 c.C274T p.R92X CAAGTCGGATTCC . 48.0 9.0 61.0 0.0 . 96 . . Atlas-SNP IDO2 169355 hgsc.bcm.edu hg19 8 39836668 39836668 + Missense_Mutation SNP G G C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 IDO2_ENST00000502986,NS,carcinoma,0,2 IDO2 NM_194294 exon4 c.G317C p.G106A CCATGGGTTATGT . 29.0 5.0 42.0 0.0 . 78 . . Atlas-SNP RP1 6101 hgsc.bcm.edu hg19 8 55539235 55539235 + Silent SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . RP1 NM_006269 exon4 c.T2793C p.P931P AAAGCCTATAAAA . 109.0 15.0 107.0 0.0 . 429 . . Atlas-SNP TRPA1 8989 hgsc.bcm.edu hg19 8 72958753 72958753 + Missense_Mutation SNP G G T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . TRPA1 NM_007332 exon17 c.C2056A p.L686I CGTTGAGGGCTGT . 121.0 15.0 63.0 0.0 . 256 . . Atlas-SNP HHLA1 10086 hgsc.bcm.edu hg19 8 133078139 133078139 + Missense_Mutation SNP A A T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . HHLA1 NM_001145095 exon15 c.T1546A p.S516T TGTGCGAGTGGGA . 120.0 15.0 89.0 0.0 . 35 . . Atlas-SNP TMEM2 23670 hgsc.bcm.edu hg19 9 74355007 74355007 + Silent SNP A A G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . TMEM2 NM_001135820 exon5 c.T1176C p.S392S TGTCACAGAGAAC . 53.0 9.0 51.0 0.0 . 112 . . Atlas-SNP PRRC2B 84726 hgsc.bcm.edu hg19 9 134357801 134357801 + Missense_Mutation SNP G G T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . PRRC2B NM_013318 exon20 c.G5027T p.S1676I ACTTGAGTGCCGA . 134.0 37.0 124.0 0.0 . 266 . . Atlas-SNP SARDH 1757 hgsc.bcm.edu hg19 9 136597702 136597702 + Missense_Mutation SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . SARDH NM_007101 exon3 c.C353T p.P118L TCACTGGGCCGCA . 46.0 23.0 34.0 0.0 . 112 . . Atlas-SNP GSTO1 9446 hgsc.bcm.edu hg19 10 106025865 106025865 + Silent SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . GSTO1 NM_004832 exon5 c.C489T p.T163T GACGACCTTCTTT . 99.0 28.0 131.0 0.0 . 14 . . Atlas-SNP ARHGEF17 9828 hgsc.bcm.edu hg19 11 73020542 73020542 + Missense_Mutation SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ARHGEF17 NM_014786 exon1 c.C859T p.H287Y GGCGGCCACCGCT . 26.0 15.0 31.0 0.0 . 117 . . Atlas-SNP GRAMD1B 57476 hgsc.bcm.edu hg19 11 123448102 123448102 + Silent SNP G G T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 GRAMD1B_ENST00000529750,NS,carcinoma,0,2 GRAMD1B NM_020716 exon2 c.G51T p.T17T CAGCACGCCGGCC . 47.0 2.0 85.0 0.0 . 122 . . Atlas-SNP KRT85 3891 hgsc.bcm.edu hg19 12 52754698 52754698 + Missense_Mutation SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . KRT85 NM_002283 exon9 c.C1463T p.P488L TGGCAGGGGGCAC . 42.0 18.0 40.0 0.0 . 78 . . Atlas-SNP OR9K2 441639 hgsc.bcm.edu hg19 12 55524501 55524501 + Missense_Mutation SNP A A G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . OR9K2 NM_001005243 exon1 c.A949G p.N317D CTGAGGAACAAAG . 135.0 54.0 131.0 0.0 . 63 . . Atlas-SNP GRIP1 23426 hgsc.bcm.edu hg19 12 66856725 66856725 + Missense_Mutation SNP C C G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . GRIP1 NM_001178074 exon9 c.G1021C p.A341P TTAGGGCCAGCCG . 105.0 40.0 97.0 0.0 . 106 . . Atlas-SNP SOX21 11166 hgsc.bcm.edu hg19 13 95363707 95363707 + Silent SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . SOX21 NM_007084 exon1 c.C597T p.T199T GCCCGCGGTCGGG . 18.0 9.0 26.0 0.0 . 21 . . Atlas-SNP RNASE1 6035 hgsc.bcm.edu hg19 14 21269973 21269973 + Silent SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . RNASE1 NM_198235 exon3 c.C255T p.V85V GAAACAGACATTC . 135.0 65.0 130.0 0.0 . 14 . . Atlas-SNP C15orf60 283677 hgsc.bcm.edu hg19 15 73766189 73766189 + Missense_Mutation SNP A A C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . C15orf60 NM_001042367 exon2 c.A176C p.E59A CCAATGAAGAATC . 86.0 16.0 68.0 0.0 . 26 . . Atlas-SNP IFT140 9742 hgsc.bcm.edu hg19 16 1630796 1630796 + Silent SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . IFT140 NM_014714 exon13 c.G1488A p.T496T CTCCACCGTGTAA . 63.0 26.0 83.0 0.0 . 128 . . Atlas-SNP TRIM72 493829 hgsc.bcm.edu hg19 16 31235616 31235616 + Missense_Mutation SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 TRIM72,NS,lymphoid_neoplasm,0,2 TRIM72 NM_001008274 exon7 c.C974T p.P325L AGGACCCGCGCCA . 39.0 18.0 44.0 0.0 . 32 . . Atlas-SNP ITGAD 3681 hgsc.bcm.edu hg19 16 31419205 31419205 + Missense_Mutation SNP A A G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ITGAD NM_005353 exon9 c.A977G p.K326R TCCAGAAGCAGCT . 67.0 12.0 55.0 0.0 . 154 . . Atlas-SNP HSDL1 83693 hgsc.bcm.edu hg19 16 84163813 84163813 + Silent SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . HSDL1 NM_031463 exon4 c.G444A p.L148L ATTTACCAAGATG . 93.0 20.0 97.0 0.0 . 23 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88499415 88499415 + Missense_Mutation SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ZNF469 NM_001127464 exon2 c.C5453T p.T1818M ACCCCACGGCAGG . 94.0 23.0 74.0 0.0 . 121 . . Atlas-SNP PIEZO1 9780 hgsc.bcm.edu hg19 16 88801357 88801357 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . PIEZO1 NM_001142864 exon14 c.A1774G p.S592G CGAAGCTGACCAC . 34.0 6.0 36.0 0.0 . 79 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11784551 11784551 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . DNAH9 NM_001372 exon55 c.T10627C p.C3543R AAAGAATGTGAAT . 69.0 42.0 82.0 0.0 . 695 . . Atlas-SNP ZNF624 57547 hgsc.bcm.edu hg19 17 16527675 16527675 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ZNF624 NM_020787 exon6 c.A525G p.I175M TCTCAATATCCTA . 90.0 54.0 160.0 0.0 . 91 . . Atlas-SNP CHMP6 79643 hgsc.bcm.edu hg19 17 78972941 78972941 + Silent SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . CHMP6 NM_024591 exon8 c.G594A p.V198V GCTGGTGGCAGCT . 37.0 13.0 50.0 0.0 . 16 . . Atlas-SNP NETO1 81832 hgsc.bcm.edu hg19 18 70423359 70423359 + Missense_Mutation SNP A A C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 NETO1,NS,carcinoma,0,2 NETO1 NM_001201465 exon8 c.T892G p.F298V GGCAGAAGAATGT . 158.0 26.0 152.0 0.0 . 178 . . Atlas-SNP FBN3 84467 hgsc.bcm.edu hg19 19 8161856 8161856 + Silent SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . FBN3 NM_032447 exon42 c.C5322T p.C1774C CTGCTGGCAGGGA . 30.0 11.0 37.0 0.0 . 300 . . Atlas-SNP OR7D2 162998 hgsc.bcm.edu hg19 19 9297230 9297230 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . OR7D2 NM_175883 exon1 c.T773C p.V258A TTGGGGTCCACTT . 60.0 21.0 69.0 0.0 . 55 . . Atlas-SNP IL27RA 9466 hgsc.bcm.edu hg19 19 14150478 14150478 + Splice_Site SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . IL27RA NM_004843 exon3 c.376+1G>A . CCCAAAGTAACGT . 65.0 22.0 53.0 0.0 . 56 . . Atlas-SNP ZNF429 353088 hgsc.bcm.edu hg19 19 21720356 21720356 + Missense_Mutation SNP A A G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ZNF429 NM_001001415 exon4 c.A1501G p.K501E CATAAAAAAATTC . 29.0 10.0 33.0 0.0 . 338 . . Atlas-SNP AP2A1 160 hgsc.bcm.edu hg19 19 50306439 50306439 + Silent SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . AP2A1 NM_014203 exon18 c.G2313A p.Q771Q CCGACAGAACCTG . 35.0 14.0 34.0 0.0 . 108 . . Atlas-SNP ZNF470 388566 hgsc.bcm.edu hg19 19 57088623 57088623 + Missense_Mutation SNP A A G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ZNF470 NM_001001668 exon6 c.A826G p.R276G CATCAGAGAATAC . 132.0 26.0 93.0 0.0 . 103 . . Atlas-SNP ZNF17 7565 hgsc.bcm.edu hg19 19 57931549 57931549 + Missense_Mutation SNP A A G novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ZNF17 NM_006959 exon3 c.A689G p.N230S GGTACAACTCCGA . 84.0 34.0 59.0 0.0 . 49 . . Atlas-SNP CHD6 84181 hgsc.bcm.edu hg19 20 40085989 40085989 + Missense_Mutation SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . CHD6 NM_032221 exon18 c.G2744A p.R915H ATCTCGCGCTCGT . 67.0 34.0 70.0 0.0 . 312 . . Atlas-SNP MED14 9282 hgsc.bcm.edu hg19 X 40562816 40562816 + Missense_Mutation SNP T T C novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . MED14 NM_004229 exon11 c.A1291G p.I431V TCTCTATGGAAGC . 153.0 88.0 214.0 0.0 . 108 . . Atlas-SNP KLHL13 90293 hgsc.bcm.edu hg19 X 117053617 117053617 + Missense_Mutation SNP C C T novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . KLHL13 NM_001168299 exon5 c.G446A p.R149K ATTTTCCTTAGAC . 113.0 66.0 168.0 0.0 . 87 . . Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 5970 5970 + Missense_Mutation SNP G G A novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . . ENST00000361624 exon1 c.G67A p.G23S TTATTCGGCGCAT . 16.0 10.0 47.0 0.0 . . . . Atlas-SNP RIPK2 8767 hgsc.bcm.edu hg19 8 90796369 90796370 + Splice_Site INS - - AAAA rs374266923 TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . RIPK2 NM_003821 exon8 c.1029+2->AAAA . . . 136.0 13.0 75.0 0.0 . 37 . . Atlas-INDEL PDGFC 56034 hgsc.bcm.edu hg19 4 157892010 157892019 + Frame_Shift_Del DEL GGCCGGCCAG GGCCGGCCAG - novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 GGCCGGCCAG GGCCGGCCAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . PDGFC NM_016205 exon1 c.38_47del p.13_16del . . 43.0 11.0 71.0 0.0 . 46 . . Atlas-Indel,Pindel ARAP1 116985 hgsc.bcm.edu hg19 11 72406835 72406836 + Frame_Shift_Ins INS - - TGGGA novel TCGA-RC-A6M3-01A-11D-A32G-10 TCGA-RC-A6M3-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 00fb960e-81b6-45ea-bf27-b39c7dcdce6a 58134b29-9c26-4b08-8b60-e053d9564b76 . ARAP1 NM_001040118 exon24 c.3348_3349insTCCCA p.Q1116fs . . 43.0 20.0 62.0 0.0 . 168 . . Atlas-Indel,Pindel