Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TPRG1L 127262 hgsc.bcm.edu hg19 1 3542442 3542442 + Silent SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TPRG1L NM_182752 exon3 c.A459G p.K153K CCCTAAATCGCTC . 25.0 6.0 15.0 0.0 . 24 . . Atlas-SNP LRRC47 57470 hgsc.bcm.edu hg19 1 3712543 3712543 + Missense_Mutation SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . LRRC47 NM_020710 exon1 c.C498G p.D166E AAAGGAGTCTAGG . 18.0 6.0 20.0 0.0 . 42 . . Atlas-SNP CEP104 9731 hgsc.bcm.edu hg19 1 3740103 3740103 + Silent SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CEP104 NM_014704 exon19 c.G2388C p.T796T GTGCTCCGTCAGA . 57.0 17.0 56.0 0.0 . 79 . . Atlas-SNP SLC2A5 6518 hgsc.bcm.edu hg19 1 9117613 9117613 + Nonsense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SLC2A5 NM_003039 exon3 c.G187T p.E63X AGTCTTCCATGAA . 75.0 26.0 70.0 0.0 . 77 . . Atlas-SNP SLC2A5 6518 hgsc.bcm.edu hg19 1 9117614 9117614 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SLC2A5 NM_003039 exon3 c.G186T p.M62I GTCTTCCATGAAT . 75.0 26.0 70.0 0.0 . 77 . . Atlas-SNP IPO13 9670 hgsc.bcm.edu hg19 1 44422488 44422488 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . IPO13 NM_014652 exon5 c.A1111T p.I371F GATGATATTCTAT . 38.0 19.0 31.0 0.0 . 86 . . Atlas-SNP EFCAB14 9813 hgsc.bcm.edu hg19 1 47144177 47144177 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . . NM_014774 exon11 c.G1444A p.G482R ATCTTCCATCTCC . 60.0 19.0 41.0 0.0 . . . . Atlas-SNP ZYG11A 440590 hgsc.bcm.edu hg19 1 53352689 53352689 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 ZYG11A,NS,carcinoma,0,1 ZYG11A NM_001004339 exon13 c.G2068A p.A690T CTCTGGGCACTAT . 87.0 12.0 59.0 0.0 . 46 . . Atlas-SNP CTH 1491 hgsc.bcm.edu hg19 1 70881649 70881649 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CTH NM_153742 exon2 c.A179G p.Y60C TTGAATATAGCCG . 60.0 23.0 55.0 0.0 . 48 . . Atlas-SNP FPGT 8790 hgsc.bcm.edu hg19 1 74671023 74671023 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FPGT NM_003838 exon4 c.G1292A p.G431E CAGTTGGGGAAAA . 137.0 28.0 129.0 0.0 . 77 . . Atlas-SNP ST6GALNAC5 81849 hgsc.bcm.edu hg19 1 77334301 77334301 + Silent SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ST6GALNAC5 NM_030965 exon2 c.A135G p.Q45Q GCAGCAACAGCAG . 109.0 5.0 56.0 0.0 . 59 . . Atlas-SNP RAB25 57111 hgsc.bcm.edu hg19 1 156039508 156039508 + Silent SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RAB25 NM_020387 exon4 c.C480G p.T160T CTCTACCAATGTT . 188.0 48.0 126.0 0.0 . 18 . . Atlas-SNP CCT3 7203 hgsc.bcm.edu hg19 1 156294772 156294772 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CCT3 NM_005998 exon6 c.A413G p.K138R ATTTTCTTTAGGG . 41.0 26.0 37.0 0.0 . 61 . . Atlas-SNP OR6P1 128366 hgsc.bcm.edu hg19 1 158532535 158532535 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . OR6P1 NM_001160325 exon1 c.C860A p.P287Q ATGGCTGGGTTGA . 131.0 30.0 77.0 0.0 . 47 . . Atlas-SNP KLHDC9 126823 hgsc.bcm.edu hg19 1 161068351 161068351 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . KLHDC9 NM_001007255 exon1 c.G26T p.R9L CGGGTCGGGCCGC . 124.0 29.0 62.0 0.0 . 16 . . Atlas-SNP SFT2D2 375035 hgsc.bcm.edu hg19 1 168204373 168204373 + Nonsense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SFT2D2 NM_199344 exon4 c.A271T p.K91X CAGCTGAAGCGAA . 213.0 119.0 136.0 0.0 . 10 . . Atlas-SNP ASTN1 460 hgsc.bcm.edu hg19 1 176905453 176905453 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ASTN1 NM_004319 exon15 c.G2431T p.V811F ACCGGACCTTCCA . 97.0 18.0 48.0 0.0 . 314 . . Atlas-SNP RASAL2 9462 hgsc.bcm.edu hg19 1 178427346 178427346 + Silent SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RASAL2 NM_170692 exon14 c.A2919G p.E973E CATGGAAGATTTC . 59.0 12.0 42.0 0.0 . 334 . . Atlas-SNP LAMC2 3918 hgsc.bcm.edu hg19 1 183209512 183209512 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . LAMC2 NM_005562 exon22 c.T3314A p.L1105H ACGGCCTCCTGCA . 130.0 11.0 94.0 0.0 . 113 . . Atlas-SNP PIK3C2B 5287 hgsc.bcm.edu hg19 1 204429747 204429747 + Silent SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PIK3C2B NM_002646 exon7 c.C1353G p.R451R AAACTTGCGGCAG . 144.0 9.0 60.0 0.0 . 142 . . Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245849630 245849630 + Silent SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . KIF26B NM_018012 exon12 c.T3345C p.S1115S GGCGTCTAGGGAG . 98.0 29.0 68.0 0.0 . 343 . . Atlas-SNP OR2T1 26696 hgsc.bcm.edu hg19 1 248569656 248569656 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . OR2T1 NM_030904 exon1 c.A361G p.M121V ATTGACATGATGT . 83.0 32.0 61.0 0.0 . 89 . . Atlas-SNP TPO 7173 hgsc.bcm.edu hg19 2 1481040 1481040 + Silent SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TPO NM_175719 exon8 c.G1002T p.P334P CTCCCCGGCCCTA . 74.0 7.0 29.0 0.0 . 224 . . Atlas-SNP CDKL4 344387 hgsc.bcm.edu hg19 2 39414810 39414810 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CDKL4 NM_001009565 exon6 c.C693A p.N231K AAACCCGTTACTT . 77.0 37.0 58.0 0.0 . 30 . . Atlas-SNP THADA 63892 hgsc.bcm.edu hg19 2 43819108 43819108 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . THADA NM_001083953 exon3 c.A154G p.I52V AATGGATTTGTGA . 128.0 62.0 99.0 0.0 . 131 . . Atlas-SNP CNRIP1 25927 hgsc.bcm.edu hg19 2 68546450 68546450 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CNRIP1 NM_001111101 exon1 c.A83G p.D28G TGCCCGTCCACCT . 57.0 25.0 26.0 0.0 . 45 . . Atlas-SNP PLEK 5341 hgsc.bcm.edu hg19 2 68613639 68613639 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PLEK NM_002664 exon5 c.T478A p.C160S GGTAACTGCGTCA . 77.0 16.0 50.0 0.0 . 64 . . Atlas-SNP MYO7B 4648 hgsc.bcm.edu hg19 2 128380906 128380906 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MYO7B NM_001080527 exon28 c.A3697T p.S1233C GGCCTCAGCGACC . 58.0 9.0 29.0 0.0 . 359 . . Atlas-SNP ARHGAP15 55843 hgsc.bcm.edu hg19 2 144194492 144194492 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ARHGAP15 NM_018460 exon8 c.C584T p.S195L AGGATTCAAGTTG . 133.0 50.0 90.0 0.0 . 99 . . Atlas-SNP RIF1 55183 hgsc.bcm.edu hg19 2 152322315 152322315 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RIF1 NM_018151 exon30 c.C6281T p.S2094F GTAAATCTGAAGA . 150.0 75.0 108.0 0.0 . 244 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168106334 168106334 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . XIRP2 NM_152381 exon9 c.A8432T p.D2811V GATCTGACAGAGG . 131.0 55.0 102.0 0.0 . 914 . . Atlas-SNP PDE11A 50940 hgsc.bcm.edu hg19 2 178634089 178634089 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PDE11A NM_016953 exon10 c.C1750T p.H584Y TTGCATGGTATGA . 55.0 27.0 38.0 0.0 . 283 . . Atlas-SNP ZC3H15 55854 hgsc.bcm.edu hg19 2 187351141 187351141 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZC3H15 NM_018471 exon1 c.G32A p.G11D CCGGGGGCAGCAA . 116.0 15.0 80.0 0.0 . 28 . . Atlas-SNP FAM171B 165215 hgsc.bcm.edu hg19 2 187627500 187627500 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FAM171B NM_177454 exon8 c.A2431G p.T811A AGCAAGACTAACA . 241.0 102.0 186.0 0.0 . 146 . . Atlas-SNP LOC200726 0 hgsc.bcm.edu hg19 2 207509036 207509036 + Missense_Mutation SNP T T G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . . NM_001102659 exon2 c.T76G p.C26G GGAATGTGCTGTG . 63.0 5.0 46.0 0.0 . . . . Atlas-SNP FASTKD2 22868 hgsc.bcm.edu hg19 2 207634821 207634821 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FASTKD2 NM_001136193 exon3 c.A784G p.I262V GAACGTATCAATG . 100.0 45.0 70.0 0.0 . 49 . . Atlas-SNP CRYGD 1421 hgsc.bcm.edu hg19 2 208986520 208986520 + Nonsense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 CRYGD,NS,carcinoma,0,1 CRYGD NM_006891 exon3 c.C402A p.Y134X CAGCTCGTAGAGG . 98.0 48.0 80.0 0.0 . 18 . . Atlas-SNP SP140L 93349 hgsc.bcm.edu hg19 2 231256927 231256927 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SP140L NM_138402 exon12 c.C1090A p.L364I TGGCCCCTACGAC . 110.0 53.0 106.0 0.0 . 68 . . Atlas-SNP SAG 6295 hgsc.bcm.edu hg19 2 234217900 234217900 + Missense_Mutation SNP G G T rs371502229 alternate_allele TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 SAG_ENST00000409110,caecum,carcinoma,0,2 SAG NM_000541 exon2 c.G65T p.R22L TCTCCCGGGACAA . 87.0 39.0 69.0 0.0 . 77 . . Atlas-SNP C3orf20 84077 hgsc.bcm.edu hg19 3 14745959 14745959 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . C3orf20 NM_032137 exon7 c.A994G p.T332A TCTCAGACCCCGG . 205.0 30.0 119.0 0.0 . 109 . . Atlas-SNP TRAK1 22906 hgsc.bcm.edu hg19 3 42243975 42243975 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TRAK1 NM_001265608 exon13 c.C1475A p.S492Y CAGGCTCCCACGA . 207.0 25.0 126.0 0.0 . 188 . . Atlas-SNP TRAK1 22906 hgsc.bcm.edu hg19 3 42243976 42243976 + Silent SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TRAK1 NM_001265608 exon13 c.C1476A p.S492S AGGCTCCCACGAC . 204.0 24.0 128.0 0.0 . 188 . . Atlas-SNP HHATL 57467 hgsc.bcm.edu hg19 3 42735224 42735224 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . HHATL NM_020707 exon10 c.T1133A p.L378Q AGCCACAGTGTGG . 101.0 19.0 60.0 0.0 . 49 . . Atlas-SNP HHATL 57467 hgsc.bcm.edu hg19 3 42735225 42735225 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . HHATL NM_020707 exon10 c.C1132A p.L378M GCCACAGTGTGGT . 105.0 20.0 61.0 0.0 . 49 . . Atlas-SNP GTDC2 84892 hgsc.bcm.edu hg19 3 43121653 43121653 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 C3orf39,colon,carcinoma,0,1 . NM_032806 exon2 c.G1271A p.R424H AGGATACGGGCTT . 81.0 5.0 56.0 0.0 . . . . Atlas-SNP CCR3 1232 hgsc.bcm.edu hg19 3 46307579 46307579 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CCR3 NM_178328 exon3 c.G993T p.K331N CCGGAAGTACCTG . 63.0 23.0 29.0 0.0 . 52 . . Atlas-SNP CCR2 729230 hgsc.bcm.edu hg19 3 46400024 46400024 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CCR2 NM_001123396 exon2 c.T1006C p.Y336H GTTTTCTACAGGG . 79.0 22.0 41.0 0.0 . 103 . . Atlas-SNP LTF 4057 hgsc.bcm.edu hg19 3 46480950 46480950 + Missense_Mutation SNP G G T rs149901533 bycluster;by1000genomes;alternate_allele TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . LTF NM_002343 exon15 c.C1745A p.A582D TCCTTAGCCCATG . 130.0 37.0 66.0 0.0 . 98 . G|1.000;A|0.000 Atlas-SNP ALS2CL 259173 hgsc.bcm.edu hg19 3 46730917 46730917 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ALS2CL NM_001190707 exon2 c.A14T p.E5V GCCTCCTCAGGGT . 119.0 15.0 66.0 0.0 . 78 . . Atlas-SNP CELSR3 1951 hgsc.bcm.edu hg19 3 48686612 48686612 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CELSR3 NM_001407 exon17 c.G6509T p.W2170L TCCAGCCAACCCT . 66.0 13.0 50.0 0.0 . 237 . . Atlas-SNP TCTA 6988 hgsc.bcm.edu hg19 3 49449889 49449889 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TCTA NM_022171 exon1 c.G30T p.L10F GGCCTTGCAGGCT . 46.0 12.0 48.0 0.0 . 13 . . Atlas-SNP SLC38A3 10991 hgsc.bcm.edu hg19 3 50256338 50256338 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SLC38A3 NM_006841 exon14 c.G1264T p.V422F CTGCTGGTCATCT . 69.0 13.0 36.0 0.0 . 22 . . Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77607255 77607255 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ROBO2 NM_002942 exon9 c.A1392T p.R464S TCCAAGAGCAACA . 170.0 11.0 89.0 0.0 . 527 . . Atlas-SNP FILIP1L 11259 hgsc.bcm.edu hg19 3 99567271 99567271 + Silent SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FILIP1L NM_182909 exon5 c.T3249C p.P1083P TGCTGAAGGGCTG . 228.0 38.0 149.0 0.0 . 154 . . Atlas-SNP FILIP1L 11259 hgsc.bcm.edu hg19 3 99567272 99567272 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FILIP1L NM_182909 exon5 c.C3248A p.P1083H GCTGAAGGGCTGG . 227.0 38.0 150.0 0.0 . 154 . . Atlas-SNP TMPRSS7 344805 hgsc.bcm.edu hg19 3 111780660 111780660 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TMPRSS7 NM_001042575 exon9 c.A959T p.Q320L ATCATCAGACAAT . 122.0 35.0 71.0 0.0 . 126 . . Atlas-SNP GOLGB1 2804 hgsc.bcm.edu hg19 3 121413069 121413069 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . GOLGB1 NM_001256486 exon13 c.G6301T p.A2101S TGTCTGCTAGGAC . 67.0 9.0 42.0 0.0 . 319 . . Atlas-SNP NMNAT3 349565 hgsc.bcm.edu hg19 3 139297767 139297767 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . NMNAT3 NM_178177 exon3 c.G129A p.V43V AGGGTCCACCCGG . 99.0 18.0 87.0 0.0 . 29 . . Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142217617 142217617 + Splice_Site SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ATR NM_001184 exon33 c.5381-1G>T . TTCCATCTGAAAA . 142.0 42.0 110.0 0.0 . 285 . . Atlas-SNP VWA5B2 90113 hgsc.bcm.edu hg19 3 183959188 183959188 + Missense_Mutation SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . VWA5B2 NM_138345 exon18 c.C3176G p.P1059R ACCTGCCCTTGGT . 262.0 77.0 188.0 0.0 . 47 . . Atlas-SNP BOD1L1 259282 hgsc.bcm.edu hg19 4 13604910 13604910 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . . NM_148894 exon10 c.A3614G p.K1205R ATTTTCTTGGTCA . 111.0 41.0 69.0 0.0 . . . . Atlas-SNP TMEM33 55161 hgsc.bcm.edu hg19 4 41951403 41951403 + Splice_Site SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TMEM33 NM_018126 exon6 c.614+1G>T . TTGTCGGTAAGCT . 25.0 11.0 23.0 0.0 . 17 . . Atlas-SNP ATP8A1 10396 hgsc.bcm.edu hg19 4 42571193 42571193 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ATP8A1 NM_006095 exon15 c.G1325A p.C442Y GGAGAGCAGCCAT . 340.0 73.0 268.0 0.0 . 206 . . Atlas-SNP ALB 213 hgsc.bcm.edu hg19 4 74285252 74285252 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ALB NM_000477 exon13 c.C1681T p.P561S CACAAGCCCAAGG . 30.0 15.0 30.0 0.0 . 132 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88535128 88535128 + Missense_Mutation SNP C C A rs372553789 alternate_allele TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DSPP NM_014208 exon5 c.C1314A p.H438Q TGGACACAGCAAT . 191.0 28.0 145.0 0.0 . 174 . . Atlas-SNP EGF 1950 hgsc.bcm.edu hg19 4 110915962 110915962 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . EGF NM_001963 exon20 c.C2931T p.P977P ATGTCCCCTGTCC . 62.0 19.0 42.0 0.0 . 113 . . Atlas-SNP EDNRA 1909 hgsc.bcm.edu hg19 4 148441067 148441067 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . EDNRA NM_001957 exon3 c.C485A p.P162H TGTTCCCCTTTTT . 112.0 53.0 75.0 0.0 . 48 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7707833 7707833 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ADCY2 NM_020546 exon9 c.C1283A p.S428Y ACATTTCTTCTGT . 94.0 28.0 56.0 0.0 . 337 . . Atlas-SNP C5orf22 55322 hgsc.bcm.edu hg19 5 31538578 31538578 + Missense_Mutation SNP T T G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . C5orf22 NM_018356 exon4 c.T589G p.S197A TGTGACTCTTCTT . 176.0 56.0 133.0 0.0 . 48 . . Atlas-SNP KIAA0825 285600 hgsc.bcm.edu hg19 5 93775731 93775731 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . KIAA0825 NM_001145678 exon14 c.T2453A p.L818Q TGATGCAGTAGGG . 326.0 104.0 231.0 0.0 . 172 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127685696 127685696 + Silent SNP A A G rs183336575 bycluster;by1000genomes;alternate_allele TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 FBN2_ENST00000508053,NS,carcinoma,0,2 FBN2 NM_001999 exon22 c.T2814C p.D938D AGCTGTATCTGTA . 71.0 7.0 54.0 0.0 . 858 . A|1.000;C|0.000 Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127704957 127704957 + Silent SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FBN2 NM_001999 exon16 c.A2166G p.A722A GGTCACTGCACCG . 92.0 16.0 60.0 0.0 . 858 . . Atlas-SNP CHSY3 337876 hgsc.bcm.edu hg19 5 129520910 129520910 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CHSY3 NM_175856 exon3 c.A2075T p.K692M CAATGAAGGGAGA . 135.0 12.0 93.0 0.0 . 92 . . Atlas-SNP SLC4A9 83697 hgsc.bcm.edu hg19 5 139740530 139740530 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SLC4A9 NM_001258428 exon2 c.C436T p.P146S GACTGCCCAGCTC . 74.0 13.0 57.0 0.0 . 125 . . Atlas-SNP PCDH1 5097 hgsc.bcm.edu hg19 5 141248170 141248170 + Silent SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PCDH1 NM_032420 exon2 c.A867G p.L289L CTCAGATAGTTCG . 87.0 11.0 52.0 0.0 . 119 . . Atlas-SNP KCTD16 57528 hgsc.bcm.edu hg19 5 143586687 143586687 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . KCTD16 NM_020768 exon3 c.G410A p.S137N GCCACAGTGACTT . 60.0 10.0 40.0 0.0 . 70 . . Atlas-SNP FBXO38 81545 hgsc.bcm.edu hg19 5 147788727 147788727 + Missense_Mutation SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FBXO38 NM_001271723 exon8 c.C909G p.C303W AGCTTGCAAAAAT . 205.0 57.0 150.0 0.0 . 115 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150925186 150925186 + Silent SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FAT2 NM_001447 exon9 c.C5502A p.P1834P GAAAGAGGGCATG . 129.0 26.0 73.0 0.0 . 465 . . Atlas-SNP ADAM19 8728 hgsc.bcm.edu hg19 5 156934075 156934075 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ADAM19 NM_033274 exon10 c.G979A p.G327R TGACTCCTCCAGA . 139.0 32.0 100.0 0.0 . 216 . . Atlas-SNP GPRIN1 114787 hgsc.bcm.edu hg19 5 176025588 176025588 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . GPRIN1 NM_052899 exon2 c.G1248A p.V416V TGGATCCACCTTG . 81.0 27.0 63.0 0.0 . 77 . . Atlas-SNP HIST1H1C 3006 hgsc.bcm.edu hg19 6 26056379 26056379 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . HIST1H1C NM_005319 exon1 c.T278C p.L93P TGCACCAGAGTGC . 129.0 60.0 65.0 0.0 . 80 . . Atlas-SNP ZKSCAN8 7745 hgsc.bcm.edu hg19 6 28121655 28121655 + Missense_Mutation SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . . NM_006298 exon6 c.C1597G p.L533V ACTGGTCTCATTC . 76.0 31.0 49.0 0.0 . . . . Atlas-SNP DEF6 50619 hgsc.bcm.edu hg19 6 35287441 35287441 + Missense_Mutation SNP A A C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DEF6 NM_022047 exon8 c.A1356C p.E452D AGATGAAGAATCT . 164.0 65.0 91.0 0.0 . 36 . . Atlas-SNP BYSL 705 hgsc.bcm.edu hg19 6 41889314 41889314 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . BYSL NM_004053 exon1 c.A14T p.K5M AATTCAAGGCGGC . 119.0 35.0 75.0 0.0 . 17 . . Atlas-SNP MEP1A 4224 hgsc.bcm.edu hg19 6 46787312 46787312 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MEP1A NM_005588 exon7 c.A427G p.I143V ATTTCCATTGGCC . 95.0 54.0 59.0 0.0 . 93 . . Atlas-SNP C6orf165 154313 hgsc.bcm.edu hg19 6 88138481 88138481 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . C6orf165 NM_001031743 exon9 c.G1098T p.M366I AGTGATGCAATGT . 197.0 32.0 143.0 0.0 . 116 . . Atlas-SNP EPHA7 2045 hgsc.bcm.edu hg19 6 93969103 93969103 + Silent SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . EPHA7 NM_004440 exon10 c.C1893T p.S631S AATACAGGAGGCA . 92.0 62.0 90.0 0.0 . 251 . . Atlas-SNP CDC40 51362 hgsc.bcm.edu hg19 6 110540596 110540596 + Nonsense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CDC40 NM_015891 exon11 c.A1120T p.K374X AACCGAAAAGTAC . 115.0 18.0 99.0 0.0 . 39 . . Atlas-SNP LAMA2 3908 hgsc.bcm.edu hg19 6 129588356 129588356 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 LAMA2,NS,carcinoma,0,1 LAMA2 NM_000426 exon16 c.G2314A p.E772K ACTGGAGAATGCC . 69.0 9.0 67.0 0.0 . 481 . . Atlas-SNP REPS1 85021 hgsc.bcm.edu hg19 6 139265148 139265148 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . REPS1 NM_001128617 exon6 c.A758G p.Q253R GTTGTCTGGTCCT . 106.0 65.0 92.0 0.0 . 58 . . Atlas-SNP ADGB 79747 hgsc.bcm.edu hg19 6 147049794 147049794 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ADGB NM_024694 exon20 c.C2437A p.L813I GGTAAACTCTCTG . 60.0 16.0 61.0 0.0 . 93 . . Atlas-SNP ADGB 79747 hgsc.bcm.edu hg19 6 147103205 147103205 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ADGB NM_024694 exon30 c.C3912T p.S1304S AGACTCCCACACT . 71.0 9.0 60.0 0.0 . 93 . . Atlas-SNP RMND1 55005 hgsc.bcm.edu hg19 6 151751308 151751308 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RMND1 NM_017909 exon5 c.G694A p.G232R CAGCTCCTTCCCT . 389.0 56.0 322.0 0.0 . 32 . . Atlas-SNP WBSCR27 155368 hgsc.bcm.edu hg19 7 73256365 73256365 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . WBSCR27 NM_152559 exon2 c.G106T p.A36S CCGGAGCCCAGCG . 125.0 15.0 34.0 0.0 . 21 . . Atlas-SNP HGF 3082 hgsc.bcm.edu hg19 7 81374398 81374398 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . HGF NM_000601 exon6 c.C664A p.L222I CCATGAGACCTCG . 59.0 11.0 35.0 0.0 . 171 . . Atlas-SNP ARPC1B 10095 hgsc.bcm.edu hg19 7 98987539 98987539 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ARPC1B NM_005720 exon5 c.A404G p.K135R TTTGCAAGCACAT . 151.0 30.0 52.0 0.0 . 41 . . Atlas-SNP ZSCAN25 221785 hgsc.bcm.edu hg19 7 99226838 99226838 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . . NM_145115 exon8 c.C830T p.A277V AGGAGGCAAAACC . 117.0 27.0 58.0 0.0 . . . . Atlas-SNP MCM7 4176 hgsc.bcm.edu hg19 7 99695002 99695002 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MCM7 NM_005916 exon10 c.A1123G p.I375V TGTTGATGTTGCC . 96.0 21.0 37.0 0.0 . 136 . . Atlas-SNP NYAP1 222950 hgsc.bcm.edu hg19 7 100085812 100085812 + Silent SNP C C T rs372170892 TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 C7orf51,NS,carcinoma,0,1 . NM_173564 exon4 c.C468T p.S156S GTCCAGCCGGAAG . 202.0 44.0 93.0 0.0 . . . . Atlas-SNP FBXO24 26261 hgsc.bcm.edu hg19 7 100190612 100190612 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FBXO24 NM_012172 exon5 c.G879T p.E293D TCAGGAGACCCAG . 173.0 8.0 70.0 0.0 . 125 . . Atlas-SNP MOGAT3 346606 hgsc.bcm.edu hg19 7 100839352 100839352 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MOGAT3 NM_178176 exon7 c.C901T p.L301F GGTGGAGGCGCTG . 67.0 21.0 39.0 0.0 . 72 . . Atlas-SNP HBP1 26959 hgsc.bcm.edu hg19 7 106820464 106820464 + Silent SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 HBP1,NS,carcinoma,0,1 HBP1 NM_001244262 exon2 c.A156G p.P52P TTTGCCATCTTCA . 120.0 31.0 85.0 0.0 . 31 . . Atlas-SNP TMEM229A 730130 hgsc.bcm.edu hg19 7 123672284 123672284 + Silent SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TMEM229A NM_001136002 exon1 c.C774T p.F258F GAAGGTGAAGAAG . 145.0 24.0 58.0 0.0 . 31 . . Atlas-SNP PARP12 64761 hgsc.bcm.edu hg19 7 139726111 139726111 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PARP12 NM_022750 exon11 c.G1666T p.A556S CCACGGCCTTCCC . 95.0 16.0 41.0 0.0 . 59 . . Atlas-SNP GIMAP6 474344 hgsc.bcm.edu hg19 7 150327197 150327197 + Nonsense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . GIMAP6 NM_001244072 exon2 c.G34T p.E12X GATTCTCCTGGGG . 106.0 11.0 45.0 0.0 . 60 . . Atlas-SNP PRKAG2 51422 hgsc.bcm.edu hg19 7 151254299 151254299 + Silent SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PRKAG2 NM_016203 exon16 c.A1698G p.T566T CGTTTCTGTCTCC . 177.0 36.0 75.0 0.0 . 86 . . Atlas-SNP UBE3C 9690 hgsc.bcm.edu hg19 7 156974809 156974809 + Missense_Mutation SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . UBE3C NM_014671 exon8 c.G778C p.V260L CAACAAGTTTTTA . 148.0 24.0 76.0 0.0 . 124 . . Atlas-SNP RP1L1 94137 hgsc.bcm.edu hg19 8 10470654 10470654 + Silent SNP G G A rs200317816 bycluster TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RP1L1 NM_178857 exon4 c.C954T p.D318D GCTGCCGTCCTCA . 95.0 44.0 57.0 0.0 . 453 . G|0.999;A|0.001 Atlas-SNP CTSB 1508 hgsc.bcm.edu hg19 8 11705647 11705647 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CTSB NM_147780 exon8 c.A461G p.Y154C GCAGGATAGCCAC . 78.0 38.0 54.0 0.0 . 24 . . Atlas-SNP TUSC3 7991 hgsc.bcm.edu hg19 8 15480657 15480657 + Missense_Mutation SNP T T G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TUSC3 NM_178234 exon2 c.T207G p.N69K AATGAATGGTGAT . 93.0 34.0 66.0 0.0 . 98 . . Atlas-SNP TUSC3 7991 hgsc.bcm.edu hg19 8 15480659 15480659 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TUSC3 NM_178234 exon2 c.G209T p.G70V TGAATGGTGATAA . 91.0 33.0 67.0 0.0 . 98 . . Atlas-SNP MTMR7 9108 hgsc.bcm.edu hg19 8 17228586 17228586 + Nonsense_Mutation SNP G G T rs368887856 TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 MTMR7,NS,carcinoma,0,1 MTMR7 NM_004686 exon3 c.C270A p.C90X GTCGTGGCAATCT . 106.0 35.0 79.0 0.0 . 75 . . Atlas-SNP CA8 767 hgsc.bcm.edu hg19 8 61135274 61135274 + Silent SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CA8 NM_004056 exon7 c.C672A p.I224I AGGTGGGATGGTG . 69.0 28.0 62.0 0.0 . 31 . . Atlas-SNP EYA1 2138 hgsc.bcm.edu hg19 8 72211880 72211880 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . EYA1 NM_000503 exon8 c.C632T p.S211L TGCTGTGAACTAT . 90.0 14.0 58.0 0.0 . 108 . . Atlas-SNP CTHRC1 115908 hgsc.bcm.edu hg19 8 104384015 104384015 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CTHRC1 NM_138455 exon1 c.A131G p.Q44R TCCGGCAGAGGGA . 158.0 40.0 96.0 0.0 . 29 . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110535606 110535606 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PKHD1L1 NM_177531 exon76 c.C12475T p.L4159F ACTCCCCTTAGAA . 123.0 7.0 91.0 0.0 . 522 . . Atlas-SNP POU5F1B 5462 hgsc.bcm.edu hg19 8 128428491 128428491 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . POU5F1B NM_001159542 exon1 c.A380G p.E127G AGAAGGAGAAGCT . 73.0 34.0 32.0 0.0 . 32 . . Atlas-SNP IFNA8 3445 hgsc.bcm.edu hg19 9 21409382 21409382 + Silent SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . IFNA8 NM_002170 exon1 c.A207G p.K69K TGATAAACAGTTC . 73.0 38.0 70.0 0.0 . 19 . . Atlas-SNP FAM189A2 9413 hgsc.bcm.edu hg19 9 72000833 72000833 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FAM189A2 NM_004816 exon9 c.G826T p.D276Y AAGAGTGACCCTG . 58.0 24.0 65.0 0.0 . 55 . . Atlas-SNP PCSK5 5125 hgsc.bcm.edu hg19 9 78965753 78965753 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PCSK5 NM_001190482 exon35 c.C4895A p.A1632E AAGGAGCGTTGAA . 65.0 28.0 54.0 0.0 . 329 . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79973288 79973288 + Missense_Mutation SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . VPS13A NM_001018038 exon57 c.C7969G p.H2657D CAGATACATGGTG . 111.0 40.0 64.0 0.0 . 735 . . Atlas-SNP GNAQ 2776 hgsc.bcm.edu hg19 9 80537112 80537112 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 GNAQ,NS,carcinoma,0,2 GNAQ NM_002072 exon2 c.A286T p.T96S TGAGTGTGTCCAT . 74.0 4.0 39.0 1.0 . 384 . . Atlas-SNP ZBTB43 23099 hgsc.bcm.edu hg19 9 129595192 129595192 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZBTB43 NM_001135776 exon2 c.A404G p.N135S AGCTAAATCATGG . 64.0 22.0 66.0 0.0 . 25 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17157488 17157488 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CUBN NM_001081 exon7 c.G702A p.M234I CTCTCGCATTAAA . 68.0 31.0 58.0 0.0 . 515 . . Atlas-SNP GPR158 57512 hgsc.bcm.edu hg19 10 25464991 25464991 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . GPR158 NM_020752 exon1 c.C642T p.A214A CCTGGCCAACGCC . 46.0 23.0 34.0 0.0 . 255 . . Atlas-SNP PALD1 27143 hgsc.bcm.edu hg19 10 72289050 72289050 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . . NM_014431 exon3 c.G251T p.R84L TGGGCCGGCTCTC . 38.0 14.0 14.0 0.0 . . . . Atlas-SNP PLCE1 51196 hgsc.bcm.edu hg19 10 96006140 96006140 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PLCE1 NM_016341 exon8 c.T2858C p.I953T TTGATATACACAC . 112.0 51.0 92.0 0.0 . 543 . . Atlas-SNP BTBD16 118663 hgsc.bcm.edu hg19 10 124090748 124090748 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . BTBD16 NM_144587 exon12 c.A1061T p.Q354L TCGACCAGGTTAC . 81.0 18.0 62.0 0.0 . 44 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1017897 1017897 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MUC6 NM_005961 exon31 c.C4904A p.T1635N GCATGGGTAGGGG . 282.0 30.0 285.0 0.0 . 408 . . Atlas-SNP MUC5B 727897 hgsc.bcm.edu hg19 11 1248993 1248993 + Silent SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MUC5B NM_002458 exon7 c.C756A p.A252A GCCGGCCGGCAAC . 56.0 15.0 57.0 0.0 . 473 . . Atlas-SNP BRSK2 9024 hgsc.bcm.edu hg19 11 1464728 1464728 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . BRSK2 NM_001256630 exon8 c.C781T p.P261S GCTCTGCCCTTCG . 46.0 20.0 33.0 0.0 . 97 . . Atlas-SNP TRAF6 7189 hgsc.bcm.edu hg19 11 36511424 36511424 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TRAF6 NM_004620 exon7 c.G1533A p.E511E AAAACCCTCCCTC . 95.0 29.0 105.0 0.0 . 56 . . Atlas-SNP OR4C15 81309 hgsc.bcm.edu hg19 11 55322576 55322576 + Missense_Mutation SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 OR4C15,NS,carcinoma,0,1 OR4C15 NM_001001920 exon1 c.C794G p.S265C ACTTCTCCTTGTT . 90.0 12.0 91.0 0.0 . 145 . . Atlas-SNP CNTN5 53942 hgsc.bcm.edu hg19 11 99715953 99715953 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CNTN5 NM_001243270 exon5 c.T536A p.V179E ACACTGTGGGGAG . 56.0 15.0 43.0 0.0 . 324 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 102984322 102984322 + Silent SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DYNC2H1 NM_001377 exon2 c.A252G p.E84E ACCTGAAGTAATT . 224.0 9.0 135.0 0.0 . 246 . . Atlas-SNP DDI1 414301 hgsc.bcm.edu hg19 11 103908253 103908253 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DDI1 NM_001001711 exon1 c.C703A p.P235T GAGGCCCCCGAGA . 102.0 58.0 76.0 0.0 . 222 . . Atlas-SNP IL18 3606 hgsc.bcm.edu hg19 11 112014513 112014513 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . IL18 NM_001562 exon6 c.G388A p.D130N TTGTATCCTTGAT . 81.0 44.0 60.0 0.0 . 10 . . Atlas-SNP C11orf71 54494 hgsc.bcm.edu hg19 11 114271008 114271008 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . C11orf71 NM_001271562 exon1 c.A46T p.R16W CCACCCTGCTCCT . 158.0 60.0 87.0 0.0 . 8 . . Atlas-SNP HYOU1 10525 hgsc.bcm.edu hg19 11 118922612 118922612 + Silent SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . HYOU1 NM_006389 exon12 c.A1257T p.A419A GTACACTGCCCCC . 104.0 33.0 64.0 0.0 . 88 . . Atlas-SNP MRPL51 51258 hgsc.bcm.edu hg19 12 6602118 6602118 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MRPL51 NM_016497 exon2 c.A100G p.I34V GCCTTATACCGAT . 78.0 33.0 66.0 0.0 . 17 . . Atlas-SNP ANP32D 23519 hgsc.bcm.edu hg19 12 48866816 48866816 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ANP32D NM_012404 exon1 c.C369T p.C123C CACTTGCGAGGTA . 81.0 28.0 77.0 0.0 . 15 . . Atlas-SNP SLC4A8 9498 hgsc.bcm.edu hg19 12 51864175 51864175 + Splice_Site SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SLC4A8 NM_001258401 exon13 c.1366-1G>T . CTCTCAGAGTGCA . 90.0 34.0 84.0 0.0 . 292 . . Atlas-SNP KRT83 3889 hgsc.bcm.edu hg19 12 52715018 52715018 + Silent SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . KRT83 NM_002282 exon1 c.C102G p.A34A GGGGGCGGCGGTG . 103.0 26.0 44.0 0.0 . 64 . . Atlas-SNP KRT83 3889 hgsc.bcm.edu hg19 12 52715019 52715019 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . KRT83 NM_002282 exon1 c.C101A p.A34D GGGGCGGCGGTGA . 102.0 26.0 41.0 0.0 . 64 . . Atlas-SNP PDE1B 5153 hgsc.bcm.edu hg19 12 54963367 54963367 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PDE1B NM_000924 exon5 c.T448C p.Y150H CCCACTTACTCTA . 111.0 47.0 90.0 0.0 . 76 . . Atlas-SNP DCD 117159 hgsc.bcm.edu hg19 12 55040905 55040905 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DCD NM_053283 exon2 c.C97A p.P33T ACTCACGGTTCCC . 33.0 5.0 29.0 0.0 . 20 . . Atlas-SNP ERBB3 2065 hgsc.bcm.edu hg19 12 56486836 56486836 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ERBB3 NM_001982 exon11 c.C1250T p.T417I TGACAACCATTGG . 80.0 12.0 62.0 0.0 . 350 . . Atlas-SNP ERBB3 2065 hgsc.bcm.edu hg19 12 56486845 56486845 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ERBB3 NM_001982 exon11 c.G1259T p.G420V TTGGAGGCAGAAG . 77.0 12.0 56.0 0.0 . 350 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57552232 57552232 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . LRP1 NM_002332 exon11 c.A1609G p.I537V CCAGGCATCATCC . 58.0 17.0 61.0 0.0 . 428 . . Atlas-SNP MARS 4141 hgsc.bcm.edu hg19 12 57884114 57884114 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MARS NM_004990 exon6 c.G615T p.Q205H AAAGCAGCCCCAG . 42.0 8.0 36.0 0.0 . 84 . . Atlas-SNP OTOGL 283310 hgsc.bcm.edu hg19 12 80762078 80762078 + Missense_Mutation SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . OTOGL NM_173591 exon54 c.G6577C p.V2193L ACATCAGTTGTAT . 60.0 17.0 55.0 0.0 . 235 . . Atlas-SNP UTP20 27340 hgsc.bcm.edu hg19 12 101750830 101750830 + Missense_Mutation SNP A A C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . UTP20 NM_014503 exon43 c.A5661C p.E1887D AAAAGAATTACAG . 77.0 11.0 64.0 0.0 . 222 . . Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104136187 104136187 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . STAB2 NM_017564 exon56 c.C5886T p.C1962C AGCCTGCCCTGGA . 67.0 27.0 53.0 0.0 . 370 . . Atlas-SNP PTPN11 5781 hgsc.bcm.edu hg19 12 112910827 112910827 + Missense_Mutation SNP A A G rs121918456 TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 PTPN11,NS,carcinoma,0,1 PTPN11 NM_080601 exon7 c.A836G p.Y279C ATAGATATAAAAA . 286.0 126.0 235.0 0.0 . 623 . . Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120594723 120594723 + Missense_Mutation SNP C C T rs201424442 bycluster TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 GCN1L1,NS,carcinoma,0,1 GCN1L1 NM_006836 exon27 c.G3161A p.R1054H TGTAAGCGAGGCG . 32.0 10.0 34.0 0.0 . 207 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23905055 23905055 + Silent SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SACS NM_014363 exon10 c.T12960C p.L4320L TTCTGGAAGCTTC . 60.0 27.0 85.0 0.0 . 871 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23905368 23905368 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SACS NM_014363 exon10 c.A12647G p.D4216G GAATTGTCAGCAT . 34.0 14.0 52.0 0.0 . 871 . . Atlas-SNP PROSER1 80209 hgsc.bcm.edu hg19 13 39588511 39588511 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . . NM_025138 exon11 c.A878G p.N293S GGATGATTAATTG . 59.0 25.0 45.0 0.0 . . . . Atlas-SNP NEK3 4752 hgsc.bcm.edu hg19 13 52718081 52718081 + Silent SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . NEK3 NM_002498 exon10 c.A846G p.K282K CGAATTTTTTATT . 82.0 23.0 74.0 0.0 . 41 . . Atlas-SNP PCDH9 5101 hgsc.bcm.edu hg19 13 67800963 67800963 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PCDH9 NM_203487 exon2 c.G1610A p.R537Q ATGAATCGTTCTT . 77.0 30.0 85.0 0.0 . 252 . . Atlas-SNP TMCO3 55002 hgsc.bcm.edu hg19 13 114201644 114201644 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TMCO3 NM_017905 exon11 c.T1720A p.Y574N GTGGCGTACGAGC . 71.0 13.0 47.0 0.0 . 77 . . Atlas-SNP OR4K17 390436 hgsc.bcm.edu hg19 14 20585602 20585602 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . OR4K17 NM_001004715 exon1 c.A37T p.S13C GGTATGAGTGATC . 99.0 50.0 69.0 0.0 . 58 . . Atlas-SNP RPGRIP1 57096 hgsc.bcm.edu hg19 14 21770659 21770659 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RPGRIP1 NM_020366 exon4 c.G503A p.R168K GGGACAGGCTGAG . 42.0 13.0 33.0 0.0 . 213 . . Atlas-SNP SALL2 6297 hgsc.bcm.edu hg19 14 21991101 21991101 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SALL2 NM_005407 exon2 c.C2761A p.P921T GGGAGGGAAAGGC . 111.0 37.0 75.0 0.0 . 95 . . Atlas-SNP PCK2 5106 hgsc.bcm.edu hg19 14 24572377 24572377 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PCK2 NM_004563 exon9 c.C1381T p.L461L GTACCCCTGGTAT . 89.0 10.0 54.0 0.0 . 66 . . Atlas-SNP NOVA1 4857 hgsc.bcm.edu hg19 14 26949267 26949267 + Silent SNP T T G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . NOVA1 NM_006489 exon3 c.A363C p.R121R CATTTCTCGAATT . 85.0 30.0 83.0 0.0 . 146 . . Atlas-SNP IRF2BPL 64207 hgsc.bcm.edu hg19 14 77493782 77493782 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . IRF2BPL NM_024496 exon1 c.G354A p.Q118Q CTGCTGCTGCTGC . 18.0 7.0 4.0 0.0 . 40 . . Atlas-SNP ATG2B 55102 hgsc.bcm.edu hg19 14 96781503 96781503 + Silent SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ATG2B NM_018036 exon23 c.C3630T p.S1210S ATGCCAGCTAAGC . 146.0 19.0 116.0 0.0 . 169 . . Atlas-SNP PPP1R13B 23368 hgsc.bcm.edu hg19 14 104205095 104205095 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PPP1R13B NM_015316 exon14 c.G2785A p.V929I CGCAGACGGCGTT . 112.0 23.0 103.0 0.0 . 72 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105417167 105417167 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . AHNAK2 NM_138420 exon7 c.C4621A p.L1541M TGCTCAGGTCAGT . 151.0 13.0 145.0 0.0 . 719 . . Atlas-SNP MAGEL2 54551 hgsc.bcm.edu hg19 15 23890418 23890418 + Silent SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MAGEL2 NM_019066 exon1 c.C2472T p.P824P GGCAAAGGGATCC . 86.0 23.0 74.0 0.0 . 108 . . Atlas-SNP GABRG3 2567 hgsc.bcm.edu hg19 15 27271951 27271951 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . GABRG3 NM_001270873 exon3 c.G253T p.V85L GGTCCTGTGTCAT . 150.0 50.0 143.0 0.0 . 115 . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28422626 28422626 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . HERC2 NM_004667 exon60 c.G9193T p.D3065Y TTCCATCGACAGT . 109.0 30.0 60.0 0.0 . 501 . . Atlas-SNP RAD51 5888 hgsc.bcm.edu hg19 15 40998470 40998470 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RAD51 NM_001164270 exon4 c.A321T p.K107N CTCCAAAGAGCTT . 337.0 108.0 234.0 0.0 . 19 . . Atlas-SNP CCPG1 9236 hgsc.bcm.edu hg19 15 55651833 55651833 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CCPG1 NM_020739 exon8 c.A2138T p.E713V TCATATTCCTTCA . 111.0 11.0 63.0 0.0 . 74 . . Atlas-SNP SLC24A1 9187 hgsc.bcm.edu hg19 15 65917213 65917213 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SLC24A1 NM_004727 exon2 c.A795T p.E265D GGTAGAAGCAAAC . 178.0 53.0 92.0 0.0 . 58 . . Atlas-SNP DENND4A 10260 hgsc.bcm.edu hg19 15 66031083 66031083 + Silent SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DENND4A NM_001144823 exon6 c.A762G p.V254V AGAAAATACAGGC . 192.0 54.0 120.0 0.0 . 217 . . Atlas-SNP DIS3L 115752 hgsc.bcm.edu hg19 15 66621720 66621720 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DIS3L NM_001143688 exon14 c.A2518G p.I840V AGACATATCAACA . 160.0 18.0 98.0 0.0 . 175 . . Atlas-SNP MAN2A2 4122 hgsc.bcm.edu hg19 15 91450650 91450650 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MAN2A2 NM_006122 exon7 c.G1121T p.R374L TCAAACGCCTGCC . 95.0 38.0 74.0 0.0 . 99 . . Atlas-SNP NR2F2 7026 hgsc.bcm.edu hg19 15 96875737 96875737 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . NR2F2 NM_021005 exon1 c.C403A p.R135S TACTGCCGCCTCA . 157.0 40.0 97.0 0.0 . 35 . . Atlas-SNP CREBBP 1387 hgsc.bcm.edu hg19 16 3860606 3860606 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CREBBP NM_001079846 exon3 c.A973T p.M325L TTACCATATTTGG . 92.0 38.0 74.0 0.0 . 546 . . Atlas-SNP C16orf96 342346 hgsc.bcm.edu hg19 16 4606659 4606659 + Nonsense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . C16orf96 NM_001145011 exon1 c.C169T p.Q57X ACCTCGCAGGTGG . 81.0 22.0 51.0 0.0 . 28 . . Atlas-SNP CHD9 80205 hgsc.bcm.edu hg19 16 53296958 53296958 + Nonsense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CHD9 NM_025134 exon20 c.G4269A p.W1423X CTTCTGGCAAAAA . 63.0 17.0 55.0 0.0 . 203 . . Atlas-SNP ADAMTS18 170692 hgsc.bcm.edu hg19 16 77323232 77323232 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ADAMTS18 NM_199355 exon22 c.G3479A p.C1160Y AGCAGACAACTTG . 56.0 19.0 38.0 0.0 . 270 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578271 7578271 + Missense_Mutation SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 TP53_ENST00000545858,NS,carcinoma,0,1 TP53 NM_000546 exon6 c.A578G p.H193R ATAAGATGCTGAG . 102.0 83.0 110.0 0.0 . 33396 . . Atlas-SNP LGALS9 3965 hgsc.bcm.edu hg19 17 25972916 25972916 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . LGALS9 NM_009587 exon7 c.C606T p.S202S GCAGAGCGCCCCT . 300.0 148.0 184.0 0.0 . 29 . . Atlas-SNP CCL8 6355 hgsc.bcm.edu hg19 17 32647344 32647344 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CCL8 NM_005623 exon2 c.A133G p.I45V ATTCCTATCCAGA . 38.0 29.0 54.0 0.0 . 12 . . Atlas-SNP KRTAP29-1 100533177 hgsc.bcm.edu hg19 17 39458187 39458187 + Missense_Mutation SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . KRTAP29-1 NM_001257309 exon1 c.C917G p.A306G CAGCAAGCTGATT . 62.0 28.0 86.0 0.0 . 2 . . Atlas-SNP DCAKD 79877 hgsc.bcm.edu hg19 17 43101864 43101864 + Silent SNP T T C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DCAKD NM_001128631 exon5 c.A633G p.T211T GAGCCCTGTGAGG . 35.0 29.0 56.0 0.0 . 25 . . Atlas-SNP ABCC3 8714 hgsc.bcm.edu hg19 17 48734481 48734481 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ABCC3 NM_003786 exon4 c.G423T p.W141C CTTCTGGTTCCTG . 107.0 13.0 56.0 0.0 . 138 . . Atlas-SNP HELZ 9931 hgsc.bcm.edu hg19 17 65144766 65144766 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . HELZ NM_014877 exon20 c.G2540A p.R847Q TAGAGTCGGTCAA . 84.0 55.0 35.0 0.0 . 160 . . Atlas-SNP ITGB4 3691 hgsc.bcm.edu hg19 17 73738729 73738729 + Missense_Mutation SNP T T A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ITGB4 NM_001005731 exon25 c.T2849A p.I950N TCTTTATCCGGCC . 144.0 24.0 85.0 0.0 . 165 . . Atlas-SNP ITGB4 3691 hgsc.bcm.edu hg19 17 73738730 73738730 + Missense_Mutation SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ITGB4 NM_001005731 exon25 c.C2850G p.I950M CTTTATCCGGCCT . 143.0 24.0 86.0 0.0 . 165 . . Atlas-SNP TNRC6C 57690 hgsc.bcm.edu hg19 17 76046694 76046694 + Silent SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TNRC6C NM_018996 exon4 c.G1551A p.V517V CGCTGTGCCAGCA . 52.0 28.0 32.0 0.0 . 173 . . Atlas-SNP COLEC12 81035 hgsc.bcm.edu hg19 18 334785 334785 + Silent SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . COLEC12 NM_130386 exon6 c.C1773T p.P591P GGCCAGGGGCACC . 97.0 19.0 87.0 0.0 . 121 . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 7888209 7888209 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PTPRM NM_001105244 exon3 c.A302T p.Y101F TTCACTATTTTGT . 86.0 20.0 97.0 0.0 . 185 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9071326 9071326 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MUC16 NM_024690 exon3 c.G16120T p.V5374L TTGTCACCAGAAC . 105.0 21.0 66.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9071328 9071328 + Missense_Mutation SNP A A C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MUC16 NM_024690 exon3 c.T16118G p.L5373R GTCACCAGAACAG . 107.0 21.0 69.0 0.0 . 4315 . . Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11137010 11137010 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 SMARCA4_ENST00000358026,NS,carcinoma,0,2 SMARCA4 NM_003072 exon23 c.G3203T p.G1068V CTGGCGGCATTGT . 102.0 11.0 87.0 0.0 . 502 . . Atlas-SNP SAMD1 90378 hgsc.bcm.edu hg19 19 14199510 14199510 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SAMD1 NM_138352 exon4 c.G1113A p.P371P CTGCTCCGGGAAT . 93.0 21.0 68.0 0.0 . 27 . . Atlas-SNP PDE4C 5143 hgsc.bcm.edu hg19 19 18321780 18321780 + Missense_Mutation SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PDE4C NM_000923 exon16 c.C2098G p.P700A GGTCTGGGCCGGC . 89.0 34.0 77.0 0.0 . 80 . . Atlas-SNP GATAD2A 54815 hgsc.bcm.edu hg19 19 19612809 19612809 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . GATAD2A NM_017660 exon10 c.G1532T p.R511L CGTTCCGCTCAGG . 36.0 5.0 27.0 0.0 . 81 . . Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40364247 40364247 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FCGBP NM_003890 exon31 c.C14395T p.R4799C AGTAGCGGCCATC . 89.0 21.0 38.0 0.0 . 416 . . Atlas-SNP PSG3 5671 hgsc.bcm.edu hg19 19 43237165 43237165 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PSG3 NM_021016 exon3 c.G480T p.E160D CATGTCCTCCCTG . 62.0 22.0 47.0 0.0 . 82 . . Atlas-SNP FUT1 2523 hgsc.bcm.edu hg19 19 49253497 49253497 + Nonsense_Mutation SNP C C A rs56131151 alternate_allele TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FUT1 NM_000148 exon4 c.G1042T p.E348X CCCACTCGGGCAG . 47.0 18.0 21.0 0.0 . 44 . . Atlas-SNP TRPM4 54795 hgsc.bcm.edu hg19 19 49686109 49686109 + Missense_Mutation SNP A A T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TRPM4 NM_001195227 exon11 c.A1538T p.K513M TGGGGAAGATGTG . 69.0 15.0 55.0 0.0 . 119 . . Atlas-SNP SIGLECL1 284369 hgsc.bcm.edu hg19 19 51770635 51770635 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . . NM_173635 exon5 c.A419G p.H140R TGAAACATATCAG . 13.0 7.0 9.0 0.0 . . . . Atlas-SNP ZNF468 90333 hgsc.bcm.edu hg19 19 53344538 53344538 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 ZNF468,NS,carcinoma,0,1 ZNF468 NM_001008801 exon4 c.G1009A p.A337T TATATGCGAAAGC . 61.0 23.0 42.0 0.0 . 46 . . Atlas-SNP ZNF845 91664 hgsc.bcm.edu hg19 19 53848860 53848860 + Silent SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZNF845 NM_138374 exon3 c.G117A p.E39E GCTGGAGAATTAT . 59.0 29.0 31.0 0.0 . 101 . . Atlas-SNP NLRP9 338321 hgsc.bcm.edu hg19 19 56223244 56223244 + Missense_Mutation SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . NLRP9 NM_176820 exon8 c.G2765C p.W922S GCAATCCAGTCGA . 154.0 53.0 88.0 0.0 . 163 . . Atlas-SNP ZNF586 54807 hgsc.bcm.edu hg19 19 58290644 58290644 + Nonsense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZNF586 NM_001077426 exon2 c.G562T p.E188X ACACTGGAGAGAG . 52.0 12.0 37.0 0.0 . 31 . . Atlas-SNP PLCB4 5332 hgsc.bcm.edu hg19 20 9319611 9319611 + Missense_Mutation SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 PLCB4,NS,carcinoma,0,1 PLCB4 NM_182797 exon5 c.G296C p.C99S TAGTTTGTGTCTG . 88.0 27.0 57.0 0.0 . 204 . . Atlas-SNP ZNF337 26152 hgsc.bcm.edu hg19 20 25656381 25656381 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZNF337 NM_015655 exon5 c.C1543A p.R515S AAAAACGTTTCTC . 97.0 30.0 72.0 0.0 . 65 . . Atlas-SNP ZNF337 26152 hgsc.bcm.edu hg19 20 25656385 25656385 + Missense_Mutation SNP C C G rs190880125 bycluster;by1000genomes;alternate_allele TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZNF337 NM_015655 exon5 c.G1539C p.E513D ACGTTTCTCACCC . 95.0 30.0 71.0 0.0 . 65 . C|0.999;T|0.001 Atlas-SNP RALGAPB 57148 hgsc.bcm.edu hg19 20 37191272 37191272 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RALGAPB NM_020336 exon24 c.G3629A p.G1210D ACCCTGGTTGGAC . 217.0 29.0 124.0 0.0 . 134 . . Atlas-SNP MMP9 4318 hgsc.bcm.edu hg19 20 44642129 44642129 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MMP9 NM_004994 exon9 c.C1566A p.D522E CTTCGACGCCATC . 119.0 8.0 61.0 0.0 . 84 . . Atlas-SNP FAM65C 140876 hgsc.bcm.edu hg19 20 49221275 49221275 + Missense_Mutation SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . FAM65C NM_080829 exon12 c.C981G p.S327R CGTGGGGCTGGGT . 86.0 12.0 34.0 0.0 . 87 . . Atlas-SNP GNAS 2778 hgsc.bcm.edu hg19 20 57428390 57428390 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . GNAS NM_080425 exon1 c.G70A p.E24K ATCGGGGAACAGC . 126.0 11.0 68.0 0.0 . 867 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57766370 57766370 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZNF831 NM_178457 exon1 c.G296T p.G99V CTGAAGGGCCTGG . 55.0 11.0 26.0 0.0 . 287 . . Atlas-SNP OSBPL2 9885 hgsc.bcm.edu hg19 20 60835074 60835074 + Silent SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . OSBPL2 NM_144498 exon3 c.G75A p.E25E TTCAGAGGCAAAT . 103.0 9.0 42.0 0.0 . 51 . . Atlas-SNP C21orf59 56683 hgsc.bcm.edu hg19 21 33975557 33975557 + Missense_Mutation SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . C21orf59 NM_021254 exon5 c.G580T p.A194S TGGCTGCCCACCA . 101.0 26.0 74.0 0.0 . 11 . . Atlas-SNP PRDM15 63977 hgsc.bcm.edu hg19 21 43248679 43248679 + Silent SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PRDM15 NM_022115 exon19 c.G2475T p.T825T TTGGAACGTCTTG . 58.0 9.0 38.0 0.0 . 110 . . Atlas-SNP ADARB1 104 hgsc.bcm.edu hg19 21 46604970 46604970 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ADARB1 NM_015834 exon9 c.G1649A p.R550Q GGGAGCGGCTGCT . 60.0 20.0 42.0 0.0 . 81 . . Atlas-SNP COL6A1 1291 hgsc.bcm.edu hg19 21 47423312 47423312 + Missense_Mutation SNP C C G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 COL6A1,NS,neuroblastoma,0,1 COL6A1 NM_001848 exon35 c.C2472G p.F824L CACGTTCTCCTCC . 19.0 6.0 8.0 0.0 . 101 . . Atlas-SNP DGCR14 8220 hgsc.bcm.edu hg19 22 19132075 19132075 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DGCR14 NM_022719 exon1 c.G79A p.E27K CAGCCTCTCCCGC . 74.0 35.0 57.0 0.0 . 43 . . Atlas-SNP SCUBE1 80274 hgsc.bcm.edu hg19 22 43608519 43608519 + Silent SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . SCUBE1 NM_173050 exon17 c.G2133A p.E711E CCCGGGCTCAGGC . 64.0 8.0 59.0 0.0 . 105 . . Atlas-SNP NCAPH2 29781 hgsc.bcm.edu hg19 22 50961497 50961497 + Silent SNP C C A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . NCAPH2 NM_001185011 exon19 c.C1582A p.R528R GTCTCACGGTTCC . 45.0 13.0 29.0 0.0 . 69 . . Atlas-SNP CRLF2 64109 hgsc.bcm.edu hg19 X 1327776 1327776 + Missense_Mutation SNP G G C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CRLF2 NM_022148 exon2 c.C105G p.I35M GAAGTAGATGATC . 460.0 65.0 385.0 0.0 . 24 . . Atlas-SNP RGN 9104 hgsc.bcm.edu hg19 X 46949222 46949222 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RGN NM_004683 exon4 c.G394T p.G132W CACCAGGGGGCCC . 55.0 7.0 43.0 0.0 . 18 . . Atlas-SNP HNRNPH2 3188 hgsc.bcm.edu hg19 X 100668006 100668006 + Missense_Mutation SNP G G T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . HNRNPH2 NM_001032393 exon2 c.G1030T p.A344S GTGGCAGCTATGG . 111.0 45.0 75.0 0.0 . 50 . . Atlas-SNP MAGEA11 4110 hgsc.bcm.edu hg19 X 148798282 148798282 + Missense_Mutation SNP C C T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MAGEA11 NM_005366 exon5 c.C1136T p.P379L CTGATCCTGCATG . 123.0 68.0 47.0 0.0 . 86 . . Atlas-SNP MTM1 4534 hgsc.bcm.edu hg19 X 149818234 149818234 + Missense_Mutation SNP G G A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MTM1 NM_000252 exon10 c.G913A p.E305K AACGCCGAACTTT . 149.0 10.0 62.0 0.0 . 89 . . Atlas-SNP PCDH11Y 83259 hgsc.bcm.edu hg19 Y 4967403 4967403 + Missense_Mutation SNP A A G novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . PCDH11Y NM_032972 exon2 c.A1784G p.Q595R TTGATCAGAATGA . 112.0 18.0 89.0 0.0 . 163 . . Atlas-SNP DNAJB14 79982 hgsc.bcm.edu hg19 4 100822217 100822218 + Frame_Shift_Ins INS - - T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . DNAJB14 NM_001031723 exon8 c.1108_1109insA p.E370fs . . 239.0 99.0 192.0 0.0 . 25 . . Atlas-Indel,Pindel TPM2 7169 hgsc.bcm.edu hg19 9 35685682 35685688 + Frame_Shift_Del DEL CTTCTGC CTTCTGC - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 CTTCTGC CTTCTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TPM2 NM_213674 exon3 c.331_337del p.111_113del . . 45.0 17.0 52.0 0.0 . 64 . . Atlas-Indel,Pindel CCDC168 643677 hgsc.bcm.edu hg19 13 103392902 103392903 + Frame_Shift_Ins INS - - T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . . NM_001146197 exon4 c.10145_10146insA p.R3382fs . . 33.0 15.0 21.0 0.0 . . . . Atlas-INDEL RBBP6 5930 hgsc.bcm.edu hg19 16 24583179 24583180 + Frame_Shift_Ins INS - - T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RBBP6 NM_006910 exon18 c.4792_4793insT p.V1598fs . . 147.0 30.0 123.0 0.0 . 158 . . Atlas-Indel,Pindel ZNF280C 55609 hgsc.bcm.edu hg19 X 129350034 129350035 + Frame_Shift_Ins INS - - A novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZNF280C NM_017666 exon14 c.1569_1570insT p.L523fs . . 61.0 28.0 37.0 0.0 . 63 . . Atlas-Indel,Pindel MUC2 4583 hgsc.bcm.edu hg19 11 1097846 1097847 + Frame_Shift_Ins INS - - C novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MUC2 NM_002457 exon37 c.6927_6928insC p.V2309fs . . 37.0 18.0 34.0 0.0 . 614 . . Atlas-Indel,Pindel MAG 4099 hgsc.bcm.edu hg19 19 35800910 35800919 + Frame_Shift_Del DEL GAGCGAGCGG GAGCGAGCGG - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 GAGCGAGCGG GAGCGAGCGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . MAG NM_080600 exon8 c.1364_1373del p.455_458del . . 54.0 23.0 52.0 0.0 . 172 . . Atlas-Indel,Pindel CNOT1 23019 hgsc.bcm.edu hg19 16 58585618 58585629 + In_Frame_Del DEL CCTGGGCCTGAG CCTGGGCCTGAG - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 CCTGGGCCTGAG CCTGGGCCTGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . CNOT1 NM_016284 exon23 c.3066_3077del p.1022_1026del . . 57.0 19.0 50.0 0.0 . 359 . . Atlas-Indel,Pindel KRTDAP 388533 hgsc.bcm.edu hg19 19 35978347 35978347 + Frame_Shift_Del DEL T T - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . KRTDAP NM_207392 exon6 c.284delC p.T95fs . . 83.0 19.0 50.0 0.0 . 9 . . Atlas-Indel,Pindel RNF148 378925 hgsc.bcm.edu hg19 7 122342607 122342620 + Frame_Shift_Del DEL AGAATGATTCCCGA AGAATGATTCCCGA - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 AGAATGATTCCCGA AGAATGATTCCCGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . RNF148 NM_198085 exon1 c.186_199del p.62_67del . . 115.0 23.0 59.0 0.0 . 71 . . Atlas-Indel,Pindel ATF5 22809 hgsc.bcm.edu hg19 19 50436140 50436141 + Frame_Shift_Del DEL AA AA - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ATF5 NM_012068 exon4 c.639_640del p.213_214del . . 109.0 66.0 75.0 0.0 . 27 . . Atlas-Indel,Pindel TMCO3 55002 hgsc.bcm.edu hg19 13 114201642 114201642 + Frame_Shift_Del DEL C C - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TMCO3 NM_017905 exon11 c.1717delG p.A573fs . . 70.0 12.0 45.0 0.0 . 77 . . Atlas-INDEL ZNF257 113835 hgsc.bcm.edu hg19 19 22271140 22271141 + Frame_Shift_Del DEL TA TA - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 TA TA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZNF257 NM_033468 exon4 c.587_588del p.196_196del . . 40.0 14.0 23.0 0.0 . 156 . . Atlas-Indel,Pindel ENAH 55740 hgsc.bcm.edu hg19 1 225707015 225707018 + Frame_Shift_Del DEL TCTT TCTT - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 TCTT TCTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ENAH NM_001008493 exon5 c.685_688del p.229_230del . . 93.0 22.0 54.0 0.0 . 46 . . Atlas-Indel,Pindel THAP10 56906 hgsc.bcm.edu hg19 15 71175115 71175115 + Frame_Shift_Del DEL G G - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 THAP10,NS,carcinoma,0,1 THAP10 NM_020147 exon2 c.563delG p.R188fs . . 239.0 74.0 174.0 0.0 . 19 . . Atlas-Indel,Pindel TRAK1 22906 hgsc.bcm.edu hg19 3 42243973 42243973 + Frame_Shift_Del DEL C C - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TRAK1 NM_001042646 exon13 c.1472delG p.G491fs . . 208.0 26.0 123.0 0.0 . 188 . . Atlas-INDEL ZXDC 79364 hgsc.bcm.edu hg19 3 126194031 126194032 + Frame_Shift_Ins INS - - T novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . ZXDC NM_025112 exon1 c.678_679insA p.K226fs . . 217.0 34.0 120.0 0.0 . 87 . . Atlas-Indel,Pindel BRWD3 254065 hgsc.bcm.edu hg19 X 79937564 79937576 + Frame_Shift_Del DEL AACTTCATTTGTT AACTTCATTTGTT - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 AACTTCATTTGTT AACTTCATTTGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . BRWD3 NM_153252 exon39 c.4416_4428del p.1472_1476del . . 80.0 13.0 40.0 0.0 . 251 . . Atlas-Indel,Pindel TRAK1 22906 hgsc.bcm.edu hg19 3 42243973 42243976 + Frame_Shift_Del DEL CTCC CTCC - novel TCGA-MI-A75G-01A-11D-A32G-10 TCGA-MI-A75G-10A-01D-A32G-10 CTCC CTCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 451ee39d-272a-47c5-9b55-cc1613bb6d2e 5d7b05ce-69de-4444-9baf-bb330ccce549 . TRAK1 NM_001042646 exon13 c.1472_1475del p.491_492del . . 207.0 20.0 126.0 0.0 . 188 . . Pindel