Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TNFRSF4	7293	hgsc.bcm.edu	hg19	1	1148033	1148033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TNFRSF4	NM_003327	exon4	c.G422T	p.C141F	GGCTTGCAGGCCT	.	47.0	18.0	35.0	0.0	.	12	.	.	Atlas-SNP
KIAA1751	85452	hgsc.bcm.edu	hg19	1	1890603	1890603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KIAA1751	NM_001080484	exon16	c.G1807C	p.G603R	ACTCGCCCGTCTG	.	40.0	12.0	67.0	0.0	.	92	.	.	Atlas-SNP
PTCHD2	57540	hgsc.bcm.edu	hg19	1	11591710	11591710	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PTCHD2	NM_020780	exon17	c.C3318T	p.H1106H	GTCCCACGGGGCA	.	96.0	31.0	104.0	0.0	.	193	.	.	Atlas-SNP
EPHA8	2046	hgsc.bcm.edu	hg19	1	22902830	22902830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	EPHA8	NM_020526	exon3	c.G280A	p.A94T	GACGGCGCCCGGC	.	177.0	76.0	194.0	0.0	.	221	.	.	Atlas-SNP
CD164L2	388611	hgsc.bcm.edu	hg19	1	27709145	27709145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CD164L2	NM_207397	exon2	c.G101A	p.R34Q	AAGCCTCGAGCTC	.	60.0	26.0	76.0	0.0	.	13	.	.	Atlas-SNP
SESN2	83667	hgsc.bcm.edu	hg19	1	28595721	28595721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SESN2	NM_031459	exon2	c.G118A	p.G40S	CGGCGAGGCCCTC	.	30.0	9.0	50.0	0.0	.	51	.	.	Atlas-SNP
CC2D1B	200014	hgsc.bcm.edu	hg19	1	52830265	52830265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CC2D1B	NM_032449	exon2	c.G28T	p.G10C	GAGGGCCCTTCCG	.	22.0	8.0	44.0	0.0	.	73	.	.	Atlas-SNP
CHD1L	9557	hgsc.bcm.edu	hg19	1	146747921	146747921	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CHD1L	NM_004284	exon14	c.G1539A	p.Q513Q	CCTCCAGGTATGA	.	66.0	22.0	73.0	0.0	.	72	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152323836	152323836	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FLG2	NM_001014342	exon3	c.G6426T	p.G2142G	CTGTCTCCCGTGA	.	188.0	32.0	129.0	0.0	.	431	.	.	Atlas-SNP
KIAA0907	22889	hgsc.bcm.edu	hg19	1	155891367	155891367	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KIAA0907	NM_014949	exon10	c.T1065G	p.Y355X	GGATGGATAATAT	.	239.0	201.0	180.0	0.0	.	58	.	.	Atlas-SNP
FMO2	2327	hgsc.bcm.edu	hg19	1	171178027	171178027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FMO2	NM_001460	exon9	c.T1351A	p.S451T	TTCTGCTCTCTCT	.	119.0	25.0	85.0	0.0	.	66	.	.	Atlas-SNP
ZNF695	57116	hgsc.bcm.edu	hg19	1	247150556	247150556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF695	NM_020394	exon4	c.T1261C	p.S421P	GGTATGAAAACCA	.	59.0	15.0	34.0	0.0	.	55	.	.	Atlas-SNP
OR2L13	284521	hgsc.bcm.edu	hg19	1	248263223	248263223	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR2L13	NM_175911	exon3	c.C546T	p.A182A	CCCAGCCATGTTG	.	153.0	68.0	111.0	0.0	.	261	.	.	Atlas-SNP
OR2M3	127062	hgsc.bcm.edu	hg19	1	248366590	248366590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR2M3	NM_001004689	exon1	c.T221C	p.I74T	TGCTCATCTGCAC	.	260.0	46.0	192.0	0.0	.	116	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1459934	1459934	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TPO	NM_175719	exon7	c.G699A	p.W233X	GGCATGGGGACAA	.	71.0	22.0	101.0	0.0	.	224	.	.	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	hg19	2	29222109	29222109	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FAM179A	NM_199280	exon4	c.G202T	p.G68X	CTGCGTGGACTCG	.	58.0	15.0	78.0	0.0	.	106	.	.	Atlas-SNP
C2orf71	388939	hgsc.bcm.edu	hg19	2	29295459	29295459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	C2orf71	NM_001029883	exon1	c.G1669T	p.V557L	AGGGCACAGGGAC	.	48.0	16.0	70.0	0.0	.	146	.	.	Atlas-SNP
REV1	51455	hgsc.bcm.edu	hg19	2	100046405	100046405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	REV1	NM_016316	exon9	c.A1444G	p.I482V	CTGGTATATCTGC	.	169.0	62.0	246.0	0.0	.	100	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168102933	168102933	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	XIRP2	NM_152381	exon9	c.C5031T	p.I1677I	AGGCATCTTAATT	.	163.0	32.0	189.0	0.0	.	914	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196866480	196866480	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DNAH7	NM_018897	exon11	c.T1092A	p.A364A	TGCAGCAGCACAG	.	112.0	41.0	135.0	0.0	.	512	.	.	Atlas-SNP
TRAK2	66008	hgsc.bcm.edu	hg19	2	202254174	202254174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TRAK2	NM_015049	exon12	c.G1246A	p.G416S	AGCGGCCCCGTGT	.	60.0	14.0	47.0	0.0	.	62	.	.	Atlas-SNP
FAM124B	79843	hgsc.bcm.edu	hg19	2	225266002	225266002	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FAM124B	NM_024785	exon1	c.A484T	p.R162X	CTTCTCTCTGCAG	.	82.0	30.0	69.0	0.0	.	71	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	hg19	2	234442150	234442150	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	USP40	NM_018218	exon10	c.A1479G	p.K493K	CTGGGATTTCCGA	.	107.0	26.0	123.0	0.0	.	174	.	.	Atlas-SNP
SRGAP3	9901	hgsc.bcm.edu	hg19	3	9101941	9101941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SRGAP3	NM_014850	exon6	c.A775C	p.I259L	CATGGATGTAGTA	.	83.0	33.0	103.0	0.0	.	146	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	CTNNB1,colon,carcinoma,-1,11	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	68.0	27.0	61.0	0.0	.	4904	.	.	Atlas-SNP
DTX3L	151636	hgsc.bcm.edu	hg19	3	122288501	122288501	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DTX3L	NM_138287	exon3	c.A1565T	p.E522V	TGAAAGAGGGTCA	.	68.0	4.0	100.0	0.0	.	59	.	.	Atlas-SNP
PCYT1A	5130	hgsc.bcm.edu	hg19	3	195975135	195975135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PCYT1A	NM_005017	exon5	c.G277T	p.A93S	CTCGGGCGTGACC	.	63.0	26.0	80.0	0.0	.	34	.	.	Atlas-SNP
ZNF718	255403	hgsc.bcm.edu	hg19	4	59395	59395	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	ZNF595,NS,carcinoma,0,1	.	NM_001039127	exon2	c.C76T	p.Q26X	GCCCAGCAGAATT	.	226.0	13.0	268.0	0.0	.	.	.	.	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	91389492	91389492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001145065	exon5	c.G1711A	p.E571K	TTTCCTGAGCCTT	.	145.0	42.0	171.0	0.0	.	.	.	.	Atlas-SNP
FAM160A1	729830	hgsc.bcm.edu	hg19	4	152550986	152550986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	FAM160A1_ENST00000435205,NS,carcinoma,0,2	FAM160A1	NM_001109977	exon8	c.G1111A	p.D371N	ATCCTAGACACTC	.	50.0	13.0	74.0	0.0	.	60	.	.	Atlas-SNP
SFRP2	6423	hgsc.bcm.edu	hg19	4	154709533	154709533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SFRP2	NM_003013	exon1	c.G455T	p.C152F	GGGATGCAAAGGT	.	57.0	25.0	60.0	0.0	.	45	.	.	Atlas-SNP
STOX2	56977	hgsc.bcm.edu	hg19	4	184931082	184931082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	STOX2	NM_020225	exon3	c.G1091A	p.R364Q	CTCATCGGAAGTC	.	47.0	21.0	89.0	0.0	.	142	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82816091	82816091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	VCAN	NM_004385	exon7	c.T1966C	p.F656L	GAATTGTTTCCTT	.	60.0	19.0	89.0	0.0	.	498	.	.	Atlas-SNP
EPB41L4A	64097	hgsc.bcm.edu	hg19	5	111598279	111598279	+	Splice_Site	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	EPB41L4A	NM_022140	exon8	c.555-1G>A	.	TGACCCCTACACC	.	61.0	20.0	57.0	0.0	.	130	.	.	Atlas-SNP
SAR1B	51128	hgsc.bcm.edu	hg19	5	133945276	133945276	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SAR1B	NM_001033503	exon6	c.A333T	p.S111S	TTCTTTTGACTCT	.	78.0	29.0	94.0	0.0	.	19	.	.	Atlas-SNP
HSPA9	3313	hgsc.bcm.edu	hg19	5	137902698	137902698	+	Missense_Mutation	SNP	T	T	G	rs199831172	bycluster	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HSPA9	NM_004134	exon8	c.A871C	p.K291Q	CTCTCTTGAACTC	.	172.0	16.0	209.0	0.0	.	49	.	T|0.999;G|0.001	Atlas-SNP
HSPA9	3313	hgsc.bcm.edu	hg19	5	137902699	137902699	+	Missense_Mutation	SNP	G	G	T	rs202180095		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HSPA9	NM_004134	exon8	c.C870A	p.F290L	TCTCTTGAACTCC	.	174.0	16.0	211.0	0.0	.	49	.	G|0.999;T|0.001	Atlas-SNP
SOX30	11063	hgsc.bcm.edu	hg19	5	157053726	157053726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SOX30	NM_007017	exon4	c.A1391G	p.H464R	AGGGCATGTACTG	.	48.0	17.0	39.0	0.0	.	67	.	.	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	hg19	5	161113294	161113294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GABRA6	NM_000811	exon2	c.A97G	p.S33G	AACGTCAGTCGGA	.	59.0	23.0	89.0	0.0	.	139	.	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12120854	12120854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HIVEP1	NM_002114	exon4	c.G826T	p.A276S	CAAGGGGCAATGC	.	82.0	36.0	102.0	0.0	.	242	.	.	Atlas-SNP
SRSF12	135295	hgsc.bcm.edu	hg19	6	89827583	89827583	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SRSF12	NM_080743	exon1	c.C24T	p.P8P	GGTGTTGGGGGGC	.	98.0	43.0	76.0	0.0	.	17	.	.	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	hg19	6	155498070	155498070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TIAM2	NM_012454	exon9	c.C2482T	p.P828S	ATCAAGCCAGAGC	.	72.0	30.0	71.0	0.0	.	161	.	.	Atlas-SNP
LAMB1	3912	hgsc.bcm.edu	hg19	7	107580787	107580787	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	LAMB1,right_upper_lobe,carcinoma,0,1	LAMB1	NM_002291	exon25	c.C3408T	p.P1136P	GCCCCTGGGGTCA	.	42.0	18.0	34.0	0.0	.	185	.	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151945190	151945190	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	MLL3_ENST00000355193,NS,carcinoma,0,2	MLL3	NM_170606	exon14	c.A2329T	p.S777C	CCTTGCTTATGTC	.	265.0	11.0	284.0	0.0	.	1564	.	.	Atlas-SNP
STMN4	81551	hgsc.bcm.edu	hg19	8	27099966	27099966	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	STMN4	NM_030795	exon3	c.C57T	p.F19F	GGAGCAGAACAAG	.	47.0	29.0	56.0	0.0	.	28	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55533949	55533949	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RP1	NM_006269	exon2	c.C423T	p.P141P	CCACCCCGTAGCC	.	109.0	25.0	47.0	0.0	.	429	.	.	Atlas-SNP
HNF4G	3174	hgsc.bcm.edu	hg19	8	76471204	76471204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HNF4G	NM_004133	exon8	c.A1025T	p.Q342L	TTGAGCAAATACA	.	136.0	20.0	78.0	0.0	.	111	.	.	Atlas-SNP
CYP11B2	1585	hgsc.bcm.edu	hg19	8	143994269	143994269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CYP11B2	NM_000498	exon7	c.T1154C	p.V385A	CTCACCACTCGCT	.	131.0	20.0	68.0	0.0	.	107	.	.	Atlas-SNP
TONSL	4796	hgsc.bcm.edu	hg19	8	145660436	145660436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TONSL	NM_013432	exon19	c.G2970C	p.Q990H	GAGGTCCTGTGGG	.	106.0	26.0	59.0	0.0	.	128	.	.	Atlas-SNP
TOPORS	10210	hgsc.bcm.edu	hg19	9	32543636	32543636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TOPORS	NM_005802	exon3	c.T887C	p.L296S	GGGACTAATCTGT	.	35.0	9.0	31.0	0.0	.	127	.	.	Atlas-SNP
RECK	8434	hgsc.bcm.edu	hg19	9	36116999	36116999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RECK	NM_021111	exon17	c.A2078T	p.Q693L	AACCACAGGTCTG	.	78.0	4.0	93.0	0.0	.	73	.	.	Atlas-SNP
ANXA1	301	hgsc.bcm.edu	hg19	9	75782426	75782426	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ANXA1	NM_000700	exon11	c.A816T	p.T272T	CGCCACAAGCAAA	.	123.0	9.0	150.0	0.0	.	27	.	.	Atlas-SNP
OR13C9	286362	hgsc.bcm.edu	hg19	9	107379836	107379836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR13C9	NM_001001956	exon1	c.C650A	p.S217Y	GAGTAAGAGATAA	.	52.0	21.0	71.0	0.0	.	42	.	.	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	hg19	9	139371483	139371483	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SEC16A	NM_014866	exon3	c.G585T	p.V195V	GGTGACCACACCG	.	52.0	24.0	54.0	0.0	.	249	.	.	Atlas-SNP
RBP3	5949	hgsc.bcm.edu	hg19	10	48390301	48390301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RBP3	NM_002900	exon1	c.A577G	p.I193V	GCAGGATGGTGTT	.	121.0	6.0	159.0	0.0	.	152	.	.	Atlas-SNP
PARG	8505	hgsc.bcm.edu	hg19	10	51040916	51040916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PARG	NM_003631	exon16	c.G2580T	p.E860D	AAGATTCTCTGAA	.	150.0	44.0	199.0	0.0	.	46	.	.	Atlas-SNP
COL13A1	1305	hgsc.bcm.edu	hg19	10	71688713	71688713	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	COL13A1	NM_001130103	exon27	c.G1410T	p.G470G	TCCTGGGCAAATT	.	62.0	11.0	122.0	0.0	.	133	.	.	Atlas-SNP
PI4K2A	55361	hgsc.bcm.edu	hg19	10	99400560	99400560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PI4K2A	NM_018425	exon1	c.C61T	p.P21S	ACCTTCCCGTCGG	.	44.0	18.0	35.0	0.0	.	57	.	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	hg19	10	127753560	127753560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ADAM12	NM_021641	exon14	c.C1433T	p.A478V	GTTCCTGCAGGCT	.	31.0	16.0	33.0	0.0	.	388	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	608998	608998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PHRF1	NM_020901	exon14	c.G3539T	p.R1180L	GGTCCCGTGAGAA	.	25.0	11.0	35.0	0.0	.	188	.	.	Atlas-SNP
AMPD3	272	hgsc.bcm.edu	hg19	11	10527413	10527413	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	AMPD3	NM_000480	exon15	c.C2313T	p.I771I	AGAGATCACCGCC	.	36.0	15.0	45.0	0.0	.	68	.	.	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	hg19	11	46921486	46921486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	LRP4	NM_002334	exon4	c.G358A	p.G120S	AGTAGCCATTCTG	.	46.0	13.0	52.0	0.0	.	160	.	.	Atlas-SNP
OR5D18	219438	hgsc.bcm.edu	hg19	11	55587642	55587642	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR5D18	NM_001001952	exon1	c.C537T	p.F179F	CTTCTTCTGTGAG	.	93.0	28.0	115.0	0.0	.	121	.	.	Atlas-SNP
KAT5	10524	hgsc.bcm.edu	hg19	11	65484247	65484247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KAT5	NM_182710	exon9	c.A1139G	p.K380R	ACTGTAAGGGCTT	.	95.0	4.0	96.0	0.0	.	36	.	.	Atlas-SNP
FADD	8772	hgsc.bcm.edu	hg19	11	70049616	70049616	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FADD	NM_003824	exon1	c.C51T	p.S17S	GTCGAGCAGCGAG	.	101.0	34.0	122.0	0.0	.	14	.	.	Atlas-SNP
TSKU	25987	hgsc.bcm.edu	hg19	11	76506706	76506706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TSKU	NM_015516	exon2	c.A46G	p.T16A	GCCCAGACAACCC	.	29.0	10.0	36.0	0.0	.	26	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117352790	117352790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DSCAML1	NM_020693	exon12	c.G2627A	p.R876Q	ATGGGCCGCTCAC	.	81.0	28.0	107.0	0.0	.	286	.	.	Atlas-SNP
BCL9L	283149	hgsc.bcm.edu	hg19	11	118769207	118769207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	BCL9L	NM_182557	exon8	c.C4417A	p.P1473T	GAAGGGGGTGGGA	.	62.0	28.0	83.0	0.0	.	254	.	.	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19436367	19436367	+	Silent	SNP	A	A	G	rs376638119		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PLEKHA5	NM_001256470	exon12	c.A1467G	p.T489T	CAAGACATTAGGA	.	66.0	36.0	57.0	0.0	.	198	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	hg19	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	KRAS_ENST00000256078,NS,adenocarcinoma,0,66	KRAS	NM_004985	exon2	c.G35A	p.G12D	ACGCCACCAGCTC	.	162.0	75.0	176.0	0.0	.	30930	.	.	Atlas-SNP
COPZ1	22818	hgsc.bcm.edu	hg19	12	54736037	54736037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	COPZ1	NM_001271736	exon3	c.G159T	p.E53D	CTTTGAGAAGAAC	.	89.0	31.0	113.0	0.0	.	10	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70953301	70953301	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PTPRB	NM_001109754	exon18	c.G4536A	p.E1512E	CTGCAGCTCAAAG	.	173.0	47.0	155.0	0.0	.	676	.	.	Atlas-SNP
ALX1	8092	hgsc.bcm.edu	hg19	12	85677457	85677457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ALX1	NM_006982	exon2	c.G334A	p.E112K	ATGCAAGAGAAGG	.	120.0	41.0	120.0	0.0	.	61	.	.	Atlas-SNP
EEA1	8411	hgsc.bcm.edu	hg19	12	93205145	93205145	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	EEA1	NM_003566	exon17	c.T2109C	p.H703H	ACTGCAATGTTCT	.	62.0	38.0	54.0	0.0	.	104	.	.	Atlas-SNP
N4BP2L2	10443	hgsc.bcm.edu	hg19	13	33110720	33110720	+	Missense_Mutation	SNP	T	T	C	rs375163250		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	N4BP2L2	NM_014887	exon2	c.A445G	p.I149V	CATTTATACCATT	.	139.0	50.0	182.0	0.0	.	90	.	.	Atlas-SNP
CARS2	79587	hgsc.bcm.edu	hg19	13	111335421	111335421	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CARS2	NM_024537	exon6	c.T632G	p.V211G	CCAGGGACCACGC	.	40.0	19.0	44.0	0.0	.	37	.	.	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	hg19	14	24808429	24808429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RIPK3	NM_006871	exon3	c.C263T	p.P88L	GGCTTGGGATCTT	.	57.0	26.0	50.0	0.0	.	43	.	.	Atlas-SNP
TBPL2	387332	hgsc.bcm.edu	hg19	14	55881125	55881125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TBPL2	NM_199047	exon7	c.C1100A	p.P367H	AGAATAGGATAGA	.	39.0	16.0	97.0	0.0	.	27	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68274609	68274609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZFYVE26	NM_015346	exon5	c.C392T	p.A131V	CCTACTGCACCCT	.	62.0	27.0	89.0	0.0	.	223	.	.	Atlas-SNP
ESRRB	2103	hgsc.bcm.edu	hg19	14	76905705	76905705	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ESRRB	NM_004452	exon4	c.G9A	p.S3S	GTCCTCGGACGAC	.	67.0	29.0	96.0	0.0	.	114	.	.	Atlas-SNP
CCDC88C	440193	hgsc.bcm.edu	hg19	14	91779756	91779756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CCDC88C	NM_001080414	exon15	c.G2404C	p.D802H	CCAGGTCCCGCCG	.	26.0	10.0	23.0	0.0	.	192	.	.	Atlas-SNP
DICER1	23405	hgsc.bcm.edu	hg19	14	95574719	95574719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DICER1	NM_030621	exon16	c.A2378G	p.Y793C	GGAGGATAGAGCT	.	69.0	21.0	78.0	0.0	.	181	.	.	Atlas-SNP
BDKRB2	624	hgsc.bcm.edu	hg19	14	96707560	96707560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	BDKRB2	NM_000623	exon3	c.G895A	p.G299S	CGCCTCGGCATCC	.	52.0	20.0	43.0	0.0	.	56	.	.	Atlas-SNP
SNRPN	6638	hgsc.bcm.edu	hg19	15	25222974	25222974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SNRPN	NM_022807	exon11	c.C470A	p.A157E	TTGCTGCGACTGC	.	39.0	14.0	47.0	0.0	.	58	.	.	Atlas-SNP
GLCE	26035	hgsc.bcm.edu	hg19	15	69560737	69560737	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GLCE	NM_015554	exon5	c.T1008C	p.D336D	AAGAGATATATAC	.	85.0	32.0	94.0	0.0	.	48	.	.	Atlas-SNP
CHRNA3	1136	hgsc.bcm.edu	hg19	15	78894345	78894345	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CHRNA3	NM_000743	exon5	c.A639T	p.P213P	GTAGCCTGGGGCT	.	94.0	4.0	111.0	0.0	.	56	.	.	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90335706	90335706	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ANPEP	NM_001150	exon17	c.G2337A	p.W779X	CTCCATCCACTGC	.	95.0	33.0	126.0	0.0	.	124	.	.	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90335708	90335708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ANPEP	NM_001150	exon17	c.T2335G	p.W779G	CCATCCACTGCTT	.	94.0	34.0	128.0	0.0	.	124	.	.	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	hg19	16	2158624	2158624	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PKD1	NM_000296	exon15	c.C6544G	p.Q2182E	CAGTCTGGTAGGT	.	46.0	16.0	53.0	0.0	.	184	.	.	Atlas-SNP
PKMYT1	9088	hgsc.bcm.edu	hg19	16	3024301	3024301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PKMYT1	NM_182687	exon6	c.G1097A	p.G366D	AGCACACCCCAGG	.	105.0	35.0	117.0	0.0	.	23	.	.	Atlas-SNP
ZC3H7A	29066	hgsc.bcm.edu	hg19	16	11859416	11859416	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZC3H7A	NM_014153	exon14	c.A1648T	p.N550Y	TTCCATTGCCGCC	.	38.0	13.0	59.0	0.0	.	72	.	.	Atlas-SNP
TEKT1	83659	hgsc.bcm.edu	hg19	17	6718550	6718550	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	TEKT1,NS,carcinoma,0,2	TEKT1	NM_053285	exon5	c.C561A	p.I187I	GAAGCAGATATCA	.	122.0	6.0	158.0	0.0	.	49	.	.	Atlas-SNP
PIGL	9487	hgsc.bcm.edu	hg19	17	16216896	16216896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PIGL	NM_004278	exon4	c.C462A	p.H154Q	TGGCCACAGCAAT	.	74.0	29.0	99.0	0.0	.	16	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38976377	38976377	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KRT10	NM_000421	exon5	c.G1079C	p.S360T	TTATAGCTGGATA	.	61.0	24.0	70.0	0.0	.	56	.	.	Atlas-SNP
MRC2	9902	hgsc.bcm.edu	hg19	17	60742016	60742016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MRC2	NM_006039	exon2	c.C226A	p.R76S	GCCCAGCGCTGGA	.	51.0	14.0	45.0	0.0	.	126	.	.	Atlas-SNP
GALK1	2584	hgsc.bcm.edu	hg19	17	73761055	73761055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GALK1	NM_000154	exon1	c.A163G	p.M55V	TCACCATAGGCAG	.	102.0	34.0	140.0	0.0	.	17	.	.	Atlas-SNP
HGS	9146	hgsc.bcm.edu	hg19	17	79661868	79661868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HGS	NM_004712	exon12	c.G960T	p.E320D	GGCTGAGGACATC	.	65.0	27.0	109.0	0.0	.	54	.	.	Atlas-SNP
HGS	9146	hgsc.bcm.edu	hg19	17	79661869	79661869	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HGS	NM_004712	exon12	c.G961C	p.D321H	GCTGAGGACATCG	.	64.0	27.0	110.0	0.0	.	54	.	.	Atlas-SNP
ROCK1	6093	hgsc.bcm.edu	hg19	18	18586398	18586398	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ROCK1	NM_005406	exon16	c.A1799C	p.D600A	TCTTTGTCTGTTT	.	46.0	19.0	75.0	0.0	.	162	.	.	Atlas-SNP
FHOD3	80206	hgsc.bcm.edu	hg19	18	34174853	34174853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FHOD3	NM_025135	exon7	c.C710A	p.T237K	TTGACACGAAAAG	.	100.0	39.0	101.0	0.0	.	210	.	.	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	hg19	18	65179142	65179142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DSEL	NM_032160	exon2	c.G2734T	p.D912Y	AAGCATCTACAAA	.	73.0	23.0	94.0	0.0	.	196	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9084547	9084547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MUC16	NM_024690	exon1	c.A7268C	p.N2423T	GCTGTATTTGTCT	.	93.0	6.0	183.0	0.0	.	4315	.	.	Atlas-SNP
RASAL3	64926	hgsc.bcm.edu	hg19	19	15569403	15569403	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RASAL3	NM_022904	exon7	c.C726A	p.A242A	CCGCTCGGCACCC	.	26.0	16.0	40.0	0.0	.	49	.	.	Atlas-SNP
CD22	933	hgsc.bcm.edu	hg19	19	35832797	35832797	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CD22	NM_001185100	exon9	c.G1964C	p.G655A	ACTCGGGTGCCTA	.	66.0	25.0	84.0	0.0	.	129	.	.	Atlas-SNP
ZNF415	55786	hgsc.bcm.edu	hg19	19	53612297	53612297	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF415	NM_018355	exon4	c.G1001C	p.G334A	GCTTTGCCACACT	.	39.0	12.0	45.0	0.0	.	68	.	.	Atlas-SNP
ATRN	8455	hgsc.bcm.edu	hg19	20	3541522	3541522	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ATRN	NM_139321	exon8	c.T1417G	p.Y473D	TATGGATATATAA	.	132.0	51.0	189.0	0.0	.	118	.	.	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	hg19	20	52198188	52198188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF217	NM_006526	exon1	c.A1178G	p.H393R	CTGGAGTGCAAGA	.	63.0	26.0	79.0	0.0	.	227	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57766654	57766654	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF831	NM_178457	exon1	c.C580T	p.Q194X	CGGACGCAGACGC	.	26.0	9.0	49.0	0.0	.	287	.	.	Atlas-SNP
ARFRP1	10139	hgsc.bcm.edu	hg19	20	62338416	62338416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ARFRP1	NM_001134758	exon2	c.A28G	p.K10E	TGTACTTGTACAA	.	49.0	20.0	60.0	0.0	.	17	.	.	Atlas-SNP
CPT1B	1375	hgsc.bcm.edu	hg19	22	51014481	51014481	+	Missense_Mutation	SNP	T	T	C	rs148070553		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CPT1B	NM_001145135	exon7	c.A760G	p.S254G	AGTTGCTGTTCAC	.	44.0	18.0	56.0	0.0	.	61	.	T|1.000;C|0.000	Atlas-SNP
ACR	49	hgsc.bcm.edu	hg19	22	51183204	51183204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ACR	NM_001097	exon5	c.T835C	p.W279R	GCCACCTGGCCCT	.	171.0	64.0	176.0	0.0	.	28	.	.	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	hg19	X	41002598	41002598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	USP9X	NM_001039591	exon10	c.C1216G	p.Q406E	CTTCATCAGCCAC	.	179.0	129.0	165.0	0.0	.	385	.	.	Atlas-SNP
GPR174	84636	hgsc.bcm.edu	hg19	X	78427073	78427073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GPR174	NM_032553	exon1	c.A569G	p.E190G	TTGGCGAGTTGAT	.	72.0	6.0	84.0	0.0	.	79	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46123902	46123902	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ARID2	NM_152641	exon2	c.167delC	p.T56fs	.	.	110.0	46.0	114.0	0.0	.	311	.	.	Atlas-Indel,Pindel
POU5F1B	5462	hgsc.bcm.edu	hg19	8	128428177	128428199	+	Frame_Shift_Del	DEL	ATGGGGGGCGGAGCCGGGCTGGG	ATGGGGGGCGGAGCCGGGCTGGG	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	ATGGGGGGCGGAGCCGGGCTGGG	ATGGGGGGCGGAGCCGGGCTGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	POU5F1B	NM_001159542	exon1	c.65_87del	p.22_29del	.	.	76.0	10.0	56.0	0.0	.	32	.	.	Atlas-INDEL
ARID2	196528	hgsc.bcm.edu	hg19	12	46246499	46246499	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ARID2	NM_152641	exon15	c.4592delC	p.P1531fs	.	.	88.0	26.0	75.0	0.0	.	311	.	.	Atlas-Indel,Pindel
CHD4	1108	hgsc.bcm.edu	hg19	12	6703766	6703778	+	Frame_Shift_Del	DEL	TCCACCTGTAGCA	TCCACCTGTAGCA	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	TCCACCTGTAGCA	TCCACCTGTAGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CHD4	NM_001273	exon15	c.2161_2173del	p.721_725del	.	.	105.0	33.0	96.0	0.0	.	539	.	.	Atlas-Indel,Pindel
PRKACB	5567	hgsc.bcm.edu	hg19	1	84662426	84662427	+	Splice_Site	INS	-	-	TA	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PRKACB	NM_002731	exon6	c.546+1->TA	.	.	.	125.0	51.0	155.0	0.0	.	174	.	.	Atlas-Indel,Pindel
SHOX	6473	hgsc.bcm.edu	hg19	X	595367	595368	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SHOX	NM_000451	exon3	c.291_292del	p.97_98del	.	.	74.0	22.0	122.0	0.0	.	31	.	.	Atlas-Indel,Pindel
CBFA2T2	9139	hgsc.bcm.edu	hg19	20	32199083	32199084	+	In_Frame_Ins	INS	-	-	CAATGACAT	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CBFA2T2	NM_005093	exon4	c.389_390insCAATGACAT	p.G130delinsGNDI	.	.	76.0	10.0	105.0	0.0	.	93	.	.	Atlas-Indel,Pindel
MDC1	9656	hgsc.bcm.edu	hg19	6	30681730	30681731	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MDC1	NM_014641	exon3	c.367_368del	p.123_123del	.	.	72.0	25.0	97.0	0.0	.	218	.	.	Atlas-Indel,Pindel
ROS1	6098	hgsc.bcm.edu	hg19	6	117658467	117658619	+	Frame_Shift_Del	DEL	ATGAAGTTTTAACATGGTAAAACTCATTGTATTTCCACTAGAAAAAGAAGTCTCGATTAATATTTTTGTTTCTCTAAGAAAATATTCTTAAAACACAAAAATGTATAGGCTTATAGCAAGTGGTTAAAATTTAAGCATTCTTTTCTATTAAAG	ATGAAGTTTTAACATGGTAAAACTCATTGTATTTCCACTAGAAAAAGAAGTCTCGATTAATATTTTTGTTTCTCTAAGAAAATATTCTTAAAACACAAAAATGTATAGGCTTATAGCAAGTGGTTAAAATTTAAGCATTCTTTTCTATTAAAG	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	ATGAAGTTTTAACATGGTAAAACTCATTGTATTTCCACTAGAAAAAGAAGTCTCGATTAATATTTTTGTTTCTCTAAGAAAATATTCTTAAAACACAAAAATGTATAGGCTTATAGCAAGTGGTTAAAATTTAAGCATTCTTTTCTATTAAAG	ATGAAGTTTTAACATGGTAAAACTCATTGTATTTCCACTAGAAAAAGAAGTCTCGATTAATATTTTTGTTTCTCTAAGAAAATATTCTTAAAACACAAAAATGTATAGGCTTATAGCAAGTGGTTAAAATTTAAGCATTCTTTTCTATTAAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ROS1	NM_002944	exon31	c.5080_5117del	p.1694_1706del	.	.	28.0	10.0	40.0	0.0	.	728	.	.	Pindel