Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KLHL17 339451 hgsc.bcm.edu hg19 1 898282 898282 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KLHL17 NM_198317 exon6 c.G1027A p.V343M GGGCCTGTGCTTT . 27.0 12.0 30.0 0.0 . 31 . . Atlas-SNP CCDC27 148870 hgsc.bcm.edu hg19 1 3686347 3686347 + Missense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CCDC27 NM_152492 exon11 c.C1744A p.L582I TCACAGCTCGAGA . 74.0 26.0 74.0 0.0 . 79 . . Atlas-SNP MFAP2 4237 hgsc.bcm.edu hg19 1 17303663 17303663 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MFAP2 NM_017459 exon3 c.T68C p.L23P GGGTCCAGGTCAT . 76.0 4.0 91.0 0.0 . 8 . . Atlas-SNP ARID1A 8289 hgsc.bcm.edu hg19 1 27102066 27102066 + Splice_Site SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ARID1A NM_139135 exon19 c.4343-2A>T . TATTTCAGGAACC . 30.0 20.0 45.0 0.0 . 842 . . Atlas-SNP ZMYM4 9202 hgsc.bcm.edu hg19 1 35884069 35884069 + Silent SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 ZMYM4,NS,carcinoma,0,1 ZMYM4 NM_005095 exon29 c.A4335G p.K1445K GAGGAAACGAAAT . 84.0 28.0 111.0 0.0 . 143 . . Atlas-SNP LEPRE1 64175 hgsc.bcm.edu hg19 1 43218272 43218272 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . LEPRE1 NM_001146289 exon9 c.A1409T p.Q470L ACCCGCTGGGAAC . 108.0 25.0 94.0 0.0 . 130 . . Atlas-SNP RAP1A 5906 hgsc.bcm.edu hg19 1 112247100 112247100 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . RAP1A NM_001010935 exon7 c.G460A p.V154I ATCAATGTTAATG . 150.0 55.0 99.0 0.0 . 14 . . Atlas-SNP SV2A 9900 hgsc.bcm.edu hg19 1 149879627 149879627 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SV2A NM_014849 exon9 c.A1511T p.Q504L TGGATCTGATTCT . 194.0 51.0 163.0 0.0 . 123 . . Atlas-SNP CRNN 49860 hgsc.bcm.edu hg19 1 152382364 152382364 + Silent SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CRNN NM_016190 exon3 c.A1194T p.T398T CGGTACTGTCTCT . 74.0 16.0 78.0 0.0 . 78 . . Atlas-SNP LENEP 55891 hgsc.bcm.edu hg19 1 154966209 154966209 + Silent SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . LENEP NM_018655 exon1 c.C126A p.T42T GCGGACCCTGAAG . 61.0 18.0 60.0 0.0 . 6 . . Atlas-SNP DUSP27 92235 hgsc.bcm.edu hg19 1 167096126 167096126 + Silent SNP G G C rs144793075 alternate_allele TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . DUSP27 NM_001080426 exon5 c.G1758C p.L586L CAGCCTGACAGCC . 111.0 38.0 92.0 0.0 . 235 . G|1.000;T|0.000 Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181701627 181701627 + Missense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CACNA1E NM_001205293 exon20 c.C2405A p.A802E AGGAGGCGCCGAC . 188.0 57.0 170.0 0.0 . 778 . . Atlas-SNP HHAT 55733 hgsc.bcm.edu hg19 1 210591627 210591627 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . HHAT NM_001170587 exon6 c.A817T p.S273C ATCTACAGCAGCA . 186.0 47.0 173.0 0.0 . 66 . . Atlas-SNP SIPA1L2 57568 hgsc.bcm.edu hg19 1 232539296 232539296 + Missense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SIPA1L2 NM_020808 exon19 c.G4838T p.C1613F AGGGTGCAGAAGG . 97.0 37.0 63.0 0.0 . 218 . . Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240286488 240286488 + Missense_Mutation SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . FMN2 NM_020066 exon2 c.T1625C p.L542P GAACGCTGTTGGA . 132.0 35.0 99.0 0.0 . 451 . . Atlas-SNP PLD5 200150 hgsc.bcm.edu hg19 1 242264076 242264076 + Silent SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PLD5 NM_152666 exon10 c.T1248C p.F416F CAGATCAAAAAAT . 127.0 29.0 91.0 0.0 . 216 . . Atlas-SNP EFCAB2 84288 hgsc.bcm.edu hg19 1 245250660 245250660 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . EFCAB2 NM_032328 exon8 c.T487A p.X163K GAAAATTAAATGT . 339.0 79.0 221.0 0.0 . 19 . . Atlas-SNP ROCK2 9475 hgsc.bcm.edu hg19 2 11337476 11337476 + Splice_Site SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ROCK2 NM_004850 exon28 c.3280-2A>T . ATTTGCTATAAGA . 219.0 61.0 215.0 0.0 . 224 . . Atlas-SNP ATAD2B 54454 hgsc.bcm.edu hg19 2 23980759 23980759 + Missense_Mutation SNP T T C rs201429059 bycluster TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ATAD2B NM_017552 exon25 c.A3607G p.M1203V TGGTCATAGATAA . 162.0 49.0 111.0 0.0 . 110 . . Atlas-SNP KCNK3 3777 hgsc.bcm.edu hg19 2 26915803 26915803 + Silent SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KCNK3 NM_002246 exon1 c.G60T p.L20L CCTGCTGGTGGGC . 69.0 20.0 53.0 0.0 . 43 . . Atlas-SNP AAK1 22848 hgsc.bcm.edu hg19 2 69741794 69741794 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . AAK1 NM_014911 exon13 c.C1585A p.Q529K AATTCTGCATTAG . 73.0 5.0 65.0 0.0 . 121 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84832704 84832704 + Silent SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . DNAH6 NM_001370 exon20 c.A3162T p.T1054T CGGCACAGATGAC . 202.0 71.0 191.0 0.0 . 194 . . Atlas-SNP VWA3B 200403 hgsc.bcm.edu hg19 2 98779401 98779401 + Missense_Mutation SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . VWA3B NM_144992 exon8 c.C1076T p.A359V TGGTGGCCGAGCC . 65.0 21.0 49.0 0.0 . 138 . . Atlas-SNP TGFBRAP1 9392 hgsc.bcm.edu hg19 2 105890085 105890085 + Silent SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TGFBRAP1 NM_004257 exon9 c.A1728T p.P576P GTCGTCTGGATTA . 157.0 49.0 149.0 0.0 . 70 . . Atlas-SNP MERTK 10461 hgsc.bcm.edu hg19 2 112732991 112732991 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MERTK NM_006343 exon7 c.G1086T p.M362I CTGCATGAATGAA . 141.0 56.0 150.0 0.0 . 112 . . Atlas-SNP DPP10 57628 hgsc.bcm.edu hg19 2 116525912 116525912 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 DPP10_ENST00000410059,NS,carcinoma,-1,2 DPP10 NM_001178034 exon13 c.T1165A p.F389I AAATTCTTTATGA . 156.0 48.0 182.0 0.0 . 415 . . Atlas-SNP IWS1 55677 hgsc.bcm.edu hg19 2 128249666 128249666 + Splice_Site SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . IWS1 NM_017969 exon11 c.1930-2A>T . GGCAGCTGGGGAA . 127.0 38.0 113.0 0.0 . 61 . . Atlas-SNP LCT 3938 hgsc.bcm.edu hg19 2 136567010 136567010 + Silent SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . LCT NM_002299 exon8 c.G2907A p.L969L CACCTTCAAAGCT . 81.0 18.0 108.0 0.0 . 309 . . Atlas-SNP PDE11A 50940 hgsc.bcm.edu hg19 2 178494226 178494226 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PDE11A NM_016953 exon20 c.A2711T p.K904M TCCCACTTACTTC . 243.0 76.0 220.0 0.0 . 283 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179641996 179641996 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TTN NM_001267550 exon27 c.T4694C p.V1565A ATATTGACATTTT . 99.0 22.0 76.0 0.0 . 18412 . . Atlas-SNP NCKAP1 10787 hgsc.bcm.edu hg19 2 183866687 183866687 + Silent SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . NCKAP1 NM_205842 exon7 c.T615C p.H205H CTTGCTATGGGGT . 283.0 77.0 252.0 0.0 . 105 . . Atlas-SNP ZDBF2 57683 hgsc.bcm.edu hg19 2 207176232 207176232 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZDBF2 NM_020923 exon5 c.A6980T p.D2327V CATATGATCTGAG . 289.0 74.0 309.0 0.0 . 531 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210818961 210818961 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . UNC80 NM_032504 exon47 c.A7226G p.Q2409R CCCTACAGGCCCT . 119.0 31.0 108.0 0.0 . 280 . . Atlas-SNP ANKMY1 51281 hgsc.bcm.edu hg19 2 241463387 241463387 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ANKMY1 NM_016552 exon7 c.A1480T p.S494C GCAAGCTGTGGGA . 63.0 18.0 63.0 0.0 . 112 . . Atlas-SNP AGXT 189 hgsc.bcm.edu hg19 2 241813413 241813413 + Missense_Mutation SNP C C T rs180177248 bycluster TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . AGXT NM_000030 exon6 c.C614T p.S205L TGTACTCGGGCTC . 45.0 22.0 41.0 0.0 . 50 . . Atlas-SNP EAF1 85403 hgsc.bcm.edu hg19 3 15475936 15475936 + Silent SNP T T G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . EAF1 NM_033083 exon4 c.T417G p.P139P ACCACCTCCACCA . 75.0 29.0 97.0 0.0 . 16 . . Atlas-SNP KAT2B 8850 hgsc.bcm.edu hg19 3 20156480 20156480 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KAT2B NM_003884 exon7 c.G1150T p.V384F CAAACAGGTAAGT . 86.0 30.0 147.0 0.0 . 73 . . Atlas-SNP KAT2B 8850 hgsc.bcm.edu hg19 3 20156481 20156481 + Splice_Site SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KAT2B NM_003884 exon7 c.1150+1G>T . AAACAGGTAAGTT . 84.0 30.0 142.0 0.0 . 73 . . Atlas-SNP KAT2B 8850 hgsc.bcm.edu hg19 3 20156482 20156482 + Splice_Site SNP T T G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KAT2B NM_003884 exon7 c.1150+2T>G . AACAGGTAAGTTT . 83.0 30.0 143.0 0.0 . 73 . . Atlas-SNP DLEC1 9940 hgsc.bcm.edu hg19 3 38158025 38158025 + Missense_Mutation SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . DLEC1 NM_007337 exon28 c.C3938T p.P1313L GGCCACCTTTCCC . 81.0 31.0 96.0 0.0 . 278 . . Atlas-SNP SCAP 22937 hgsc.bcm.edu hg19 3 47461017 47461017 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SCAP NM_012235 exon13 c.C1741A p.P581T CAGGTGGGAAGAT . 97.0 35.0 128.0 0.0 . 88 . . Atlas-SNP PDZRN3 23024 hgsc.bcm.edu hg19 3 73432795 73432795 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PDZRN3 NM_015009 exon10 c.C2922A p.S974R CTCCTTGCTCCAG . 44.0 16.0 70.0 0.0 . 196 . . Atlas-SNP PDZRN3 23024 hgsc.bcm.edu hg19 3 73673351 73673351 + Missense_Mutation SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PDZRN3 NM_015009 exon1 c.T626G p.L209R ATCTGCAGCTCAA . 15.0 7.0 24.0 0.0 . 196 . . Atlas-SNP OR5H1 26341 hgsc.bcm.edu hg19 3 97851772 97851772 + Silent SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . OR5H1 NM_001005338 exon1 c.G231T p.V77V CACAGTGACCCCA . 701.0 251.0 963.0 1.0 . 71 . . Atlas-SNP GPR156 165829 hgsc.bcm.edu hg19 3 119886209 119886209 + Silent SNP G G C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . GPR156 NM_153002 exon9 c.C2115G p.A705A ACTTGGGGCCCGG . 47.0 16.0 65.0 0.0 . 85 . . Atlas-SNP FBXO40 51725 hgsc.bcm.edu hg19 3 121341447 121341447 + Missense_Mutation SNP C C G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . FBXO40 NM_016298 exon3 c.C1171G p.P391A GACCTGCCCAAAT . 115.0 51.0 159.0 0.0 . 108 . . Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130285713 130285713 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . COL6A6 NM_001102608 exon4 c.T1450A p.W484R GACAGCTGGGACT . 90.0 36.0 129.0 0.0 . 497 . . Atlas-SNP ACAP2 23527 hgsc.bcm.edu hg19 3 195013010 195013010 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ACAP2 NM_012287 exon19 c.T1937A p.I646N GCCTGAATAAGTG . 108.0 39.0 218.0 0.0 . 72 . . Atlas-SNP GAK 2580 hgsc.bcm.edu hg19 4 887684 887684 + Nonsense_Mutation SNP G G T rs140104121 byfrequency;alternate_allele TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . GAK NM_005255 exon8 c.C855A p.Y285X GACCGTGTACTGC . 123.0 33.0 106.0 0.0 . 104 . G|0.999;A|0.001 Atlas-SNP RNF212 285498 hgsc.bcm.edu hg19 4 1084625 1084625 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . RNF212 NM_194439 exon4 c.T248A p.I83N TCTAAAATCTGAA . 91.0 24.0 84.0 0.0 . 69 . . Atlas-SNP ABLIM2 84448 hgsc.bcm.edu hg19 4 8031435 8031435 + Silent SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ABLIM2 NM_001130087 exon12 c.C1149T p.S383S CCCGAGGCTAACC . 91.0 23.0 101.0 0.0 . 59 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30723268 30723268 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PCDH7 NM_032457 exon1 c.T224A p.L75Q AGTACCTGAAGAT . 61.0 15.0 59.0 0.0 . 215 . . Atlas-SNP HERC6 55008 hgsc.bcm.edu hg19 4 89329771 89329771 + Splice_Site SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . HERC6 NM_017912 exon11 c.1368+2T>C . CCATGGTAATAGC . 158.0 107.0 402.0 0.0 . 104 . . Atlas-SNP CFI 3426 hgsc.bcm.edu hg19 4 110685711 110685711 + Missense_Mutation SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CFI NM_000204 exon3 c.T464G p.L155R AGGTCAAGGCAGG . 65.0 32.0 60.0 0.0 . 59 . . Atlas-SNP EGF 1950 hgsc.bcm.edu hg19 4 110897334 110897334 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . EGF NM_001963 exon13 c.A1996T p.I666F TCTGTGATTGAAA . 180.0 108.0 203.0 0.0 . 113 . . Atlas-SNP USP53 54532 hgsc.bcm.edu hg19 4 120189490 120189490 + Silent SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . USP53 NM_019050 exon13 c.G1203A p.K401K GGCAAAGCAGAGA . 664.0 193.0 682.0 0.0 . 69 . . Atlas-SNP TLL1 7092 hgsc.bcm.edu hg19 4 166996136 166996136 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TLL1 NM_012464 exon17 c.T2295A p.N765K TGACAATAAACAT . 185.0 17.0 171.0 0.0 . 194 . . Atlas-SNP HMGB2 3148 hgsc.bcm.edu hg19 4 174253236 174253236 + Missense_Mutation SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . HMGB2 NM_001130689 exon4 c.G625A p.E209K TTTATTCTTCATC . 138.0 28.0 130.0 0.0 . 24 . . Atlas-SNP ZFP42 132625 hgsc.bcm.edu hg19 4 188924650 188924650 + Nonsense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 ZFP42,NS,carcinoma,0,2 ZFP42 NM_174900 exon4 c.C689A p.S230X AGAGCTCAAAACT . 68.0 39.0 50.0 0.0 . 87 . . Atlas-SNP MYO10 4651 hgsc.bcm.edu hg19 5 16682120 16682120 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MYO10 NM_012334 exon31 c.C4049T p.P1350L GAGTTGGGTCTGA . 37.0 8.0 27.0 0.0 . 198 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89925133 89925133 + Missense_Mutation SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . GPR98 NM_032119 exon9 c.T1616C p.L539S TATCCTTGAGTTT . 304.0 141.0 190.0 0.0 . 605 . . Atlas-SNP SEMA6A 57556 hgsc.bcm.edu hg19 5 115783094 115783094 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SEMA6A NM_020796 exon19 c.C2308T p.P770S GGCTGGGCTTCCG . 82.0 44.0 73.0 0.0 . 93 . . Atlas-SNP PCDHGB2 56103 hgsc.bcm.edu hg19 5 140740665 140740665 + Silent SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PCDHGB2 NM_018923 exon1 c.A963C p.A321A CGAAGCAAAAGAT . 183.0 39.0 131.0 0.0 . 196 . . Atlas-SNP PCDHGA8 9708 hgsc.bcm.edu hg19 5 140773878 140773878 + Missense_Mutation SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PCDHGA8 NM_014004 exon1 c.C1498T p.P500S GGGGCGCCCCTGT . 184.0 88.0 128.0 0.0 . 146 . . Atlas-SNP FAM71B 153745 hgsc.bcm.edu hg19 5 156590005 156590005 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . FAM71B NM_130899 exon2 c.T1271A p.V424D TTCCAGACTTCAG . 95.0 22.0 82.0 0.0 . 145 . . Atlas-SNP KIAA1191 57179 hgsc.bcm.edu hg19 5 175774922 175774922 + Splice_Site SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KIAA1191 NM_001079685 exon8 c.709+2T>G . TGCCTTACCAGAA . 161.0 44.0 109.0 0.0 . 12 . . Atlas-SNP TRIM52 84851 hgsc.bcm.edu hg19 5 180684462 180684462 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TRIM52 NM_032765 exon2 c.C847A p.L283I TCTGAAGTATTCC . 223.0 42.0 143.0 0.0 . 20 . . Atlas-SNP PPP1R3G 648791 hgsc.bcm.edu hg19 6 5086148 5086148 + Silent SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PPP1R3G NM_001145115 exon1 c.C429A p.A143A CCTGGCCAGCGTG . 21.0 9.0 23.0 0.0 . 11 . . Atlas-SNP SLC17A3 10786 hgsc.bcm.edu hg19 6 25850686 25850686 + Splice_Site SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SLC17A3 NM_006632 exon8 c.759+1G>A . TACTCACGTCTCT . 157.0 41.0 160.0 0.0 . 95 . . Atlas-SNP HIST1H2BE 8344 hgsc.bcm.edu hg19 6 26184113 26184113 + Silent SNP C C G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . HIST1H2BE NM_003523 exon1 c.C90G p.R30R GAAGCGCAAGCGC . 160.0 42.0 148.0 0.0 . 10 . . Atlas-SNP FANCE 2178 hgsc.bcm.edu hg19 6 35428340 35428340 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . FANCE NM_021922 exon8 c.A1328G p.E443G TCTTGGAGCTGCC . 109.0 32.0 76.0 0.0 . 45 . . Atlas-SNP MDGA1 266727 hgsc.bcm.edu hg19 6 37611713 37611713 + Missense_Mutation SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MDGA1 NM_153487 exon14 c.A2408G p.Y803C AACATGTAGTAGC . 76.0 20.0 63.0 0.0 . 104 . . Atlas-SNP KIF6 221458 hgsc.bcm.edu hg19 6 39311593 39311593 + Splice_Site SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KIF6 NM_145027 exon23 c.2322-2A>T . GGATGCTGGAGGC . 76.0 28.0 90.0 0.0 . 233 . . Atlas-SNP TRERF1 55809 hgsc.bcm.edu hg19 6 42200563 42200563 + Missense_Mutation SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TRERF1 NM_033502 exon17 c.A3134G p.K1045R CGGGCCTTGGTCA . 56.0 12.0 36.0 0.0 . 124 . . Atlas-SNP PTCHD4 442213 hgsc.bcm.edu hg19 6 47846685 47846685 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . . NM_001013732 exon3 c.T1895A p.L632Q AGGGATAGGGGCC . 53.0 13.0 50.0 0.0 . . . . Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51923279 51923279 + Missense_Mutation SNP A A T rs201989004 by1000genomes;alternate_allele TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PKHD1 NM_170724 exon16 c.T1354A p.Y452N GGTAGTACATGGC . 107.0 37.0 52.0 0.0 . 927 . A|1.000;G|0.000 Atlas-SNP COL9A1 1297 hgsc.bcm.edu hg19 6 70981793 70981793 + Splice_Site SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . COL9A1 NM_001851 exon14 c.1066-2A>T . CGGCCCTAAAAGA . 388.0 113.0 393.0 0.0 . 228 . . Atlas-SNP PHIP 55023 hgsc.bcm.edu hg19 6 79688417 79688417 + Silent SNP C C G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PHIP NM_017934 exon24 c.G2781C p.V927V TTCTCCCACAGCC . 97.0 47.0 159.0 0.0 . 177 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90388402 90388402 + Missense_Mutation SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MDN1 NM_014611 exon75 c.G12328A p.E4110K GCTTCTCCTTCTC . 107.0 35.0 121.0 0.0 . 478 . . Atlas-SNP KLHL32 114792 hgsc.bcm.edu hg19 6 97512550 97512550 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KLHL32 NM_052904 exon5 c.G359T p.S120I CGGGCAGTCACCT . 92.0 33.0 94.0 0.0 . 85 . . Atlas-SNP FBXL4 26235 hgsc.bcm.edu hg19 6 99374696 99374696 + Nonsense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . FBXL4 NM_012160 exon3 c.G169T p.E57X CTACTTCTTTGGC . 86.0 41.0 125.0 0.0 . 54 . . Atlas-SNP PRDM1 639 hgsc.bcm.edu hg19 6 106553643 106553643 + Silent SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PRDM1 NM_001198 exon5 c.A1608T p.A536A CTCAGCAGCGATG . 122.0 48.0 161.0 0.0 . 195 . . Atlas-SNP REV3L 5980 hgsc.bcm.edu hg19 6 111688372 111688372 + Nonsense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . REV3L NM_002912 exon14 c.A6619T p.R2207X GTTTTCTCTGTAT . 82.0 37.0 136.0 0.0 . 386 . . Atlas-SNP REV3L 5980 hgsc.bcm.edu hg19 6 111693804 111693804 + Silent SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . REV3L NM_002912 exon13 c.G5754A p.K1918K CCTGGGCTTTTCT . 72.0 34.0 95.0 0.0 . 386 . . Atlas-SNP ROS1 6098 hgsc.bcm.edu hg19 6 117686251 117686251 + Silent SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ROS1 NM_002944 exon20 c.A3090T p.T1030T CAGAGATGTTTTG . 97.0 42.0 144.0 0.0 . 728 . . Atlas-SNP MED23 9439 hgsc.bcm.edu hg19 6 131910712 131910712 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MED23 NM_015979 exon29 c.C3850A p.L1284M TCAGCAGCATGTC . 142.0 51.0 221.0 0.0 . 112 . . Atlas-SNP AHI1 54806 hgsc.bcm.edu hg19 6 135715921 135715921 + Silent SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . AHI1 NM_001134832 exon22 c.T3102G p.T1034T GGTCTGAGTGAAA . 107.0 36.0 134.0 0.0 . 81 . . Atlas-SNP SCAF8 22828 hgsc.bcm.edu hg19 6 155145419 155145419 + Missense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SCAF8 NM_014892 exon17 c.C1978A p.P660T GCATTTCCTGTGT . 80.0 10.0 85.0 0.0 . 122 . . Atlas-SNP RPS6KA2 6196 hgsc.bcm.edu hg19 6 166862319 166862319 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 RPS6KA2_ENST00000503859,NS,carcinoma,0,2 RPS6KA2 NM_001006932 exon15 c.A1249T p.I417F AGTGGATGTTGTT . 49.0 25.0 78.0 0.0 . 212 . . Atlas-SNP THBS2 7058 hgsc.bcm.edu hg19 6 169639734 169639734 + Silent SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . THBS2 NM_003247 exon8 c.A1089G p.P363P AAAGGATGGACTG . 41.0 17.0 58.0 0.0 . 230 . . Atlas-SNP MAD1L1 8379 hgsc.bcm.edu hg19 7 2252879 2252879 + Silent SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MAD1L1 NM_003550 exon10 c.G954A p.E318E CAGTCTCTCCCAG . 49.0 19.0 46.0 0.0 . 81 . . Atlas-SNP CARD11 84433 hgsc.bcm.edu hg19 7 2951897 2951897 + Missense_Mutation SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CARD11 NM_032415 exon23 c.A3053G p.Q1018R GTCTTCTGCCTTC . 108.0 43.0 84.0 0.0 . 339 . . Atlas-SNP SLC29A4 222962 hgsc.bcm.edu hg19 7 5336621 5336621 + Missense_Mutation SNP C C G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SLC29A4 NM_153247 exon7 c.C674G p.P225R TGCTGCCCGACGA . 46.0 10.0 34.0 0.0 . 52 . . Atlas-SNP NPSR1 387129 hgsc.bcm.edu hg19 7 34917718 34917718 + Silent SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . NPSR1 NM_207173 exon9 c.T1056A p.A352A GGAGGCTGCGCTA . 251.0 70.0 232.0 0.0 . 134 . . Atlas-SNP GPR141 353345 hgsc.bcm.edu hg19 7 37780305 37780305 + Missense_Mutation SNP C C G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . GPR141 NM_181791 exon1 c.C310G p.L104V ACGTTCCTATTCT . 123.0 36.0 107.0 0.0 . 79 . . Atlas-SNP NACAD 23148 hgsc.bcm.edu hg19 7 45120738 45120738 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . NACAD NM_001146334 exon5 c.A4382T p.Y1461F ACCACATAAGTGT . 107.0 30.0 100.0 0.0 . 44 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47886593 47886593 + Silent SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PKD1L1 NM_138295 exon32 c.A5037T p.A1679A GTTCACTGCCTTA . 327.0 114.0 313.0 0.0 . 328 . . Atlas-SNP FZD9 8326 hgsc.bcm.edu hg19 7 72849306 72849306 + Silent SNP C C T rs144961735 TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . FZD9 NM_003508 exon1 c.C969T p.F323F CTACTTCGGCATG . 59.0 18.0 54.0 0.0 . 51 . C|1.000;T|0.000 Atlas-SNP HIP1 3092 hgsc.bcm.edu hg19 7 75176292 75176292 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . HIP1 NM_005338 exon25 c.A2504T p.Q835L AGCACCTGAATAG . 85.0 20.0 81.0 0.0 . 91 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83675692 83675692 + Silent SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SEMA3A NM_006080 exon6 c.T615G p.L205L GTGCCCAAGAGTT . 219.0 66.0 157.0 0.0 . 121 . . Atlas-SNP ARPC1A 10552 hgsc.bcm.edu hg19 7 98955969 98955969 + Silent SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 ARPC1A,NS,carcinoma,0,2 ARPC1A NM_006409 exon7 c.G720T p.S240S GGTCTCGACTCTG . 79.0 4.0 92.0 0.0 . 38 . . Atlas-SNP TRIM4 89122 hgsc.bcm.edu hg19 7 99506413 99506413 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TRIM4 NM_033017 exon4 c.T590C p.M197T ATTCTCATTCGCT . 99.0 30.0 88.0 0.0 . 33 . . Atlas-SNP DNAJC2 27000 hgsc.bcm.edu hg19 7 102953436 102953436 + Silent SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . DNAJC2 NM_014377 exon16 c.G1749A p.A583A AGGCACCGCTTCT . 154.0 57.0 181.0 0.0 . 46 . . Atlas-SNP DOCK4 9732 hgsc.bcm.edu hg19 7 111575684 111575684 + Splice_Site SNP C C G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 DOCK4,NS,carcinoma,0,1 DOCK4 NM_014705 exon13 c.978-1G>C . TTACACCTATGAA . 207.0 55.0 207.0 0.0 . 365 . . Atlas-SNP ASB15 142685 hgsc.bcm.edu hg19 7 123269106 123269106 + Missense_Mutation SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 ASB15_ENST00000451558,NS,haematopoietic_neoplasm,0,1 ASB15 NM_080928 exon8 c.C1058T p.A353V AGACTGCGCTGTA . 235.0 70.0 214.0 2.0 . 94 . . Atlas-SNP CLCN1 1180 hgsc.bcm.edu hg19 7 143043750 143043750 + Missense_Mutation SNP A A T rs199610988 bycluster;by1000genomes;alternate_allele TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CLCN1 NM_000083 exon19 c.A2363T p.Q788L CAACCCAGGTGAG . 40.0 10.0 31.0 0.0 . 141 . A|0.999;C|0.001 Atlas-SNP NOBOX 135935 hgsc.bcm.edu hg19 7 144096937 144096937 + Missense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . NOBOX NM_001080413 exon6 c.G1067T p.R356L TTGGCCCGGCGAT . 82.0 25.0 90.0 0.0 . 130 . . Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151873528 151873528 + Missense_Mutation SNP G G C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MLL3 NM_170606 exon38 c.C9010G p.L3004V TCCCCAGACTGTG . 154.0 44.0 110.0 0.0 . 1564 . . Atlas-SNP ANK1 286 hgsc.bcm.edu hg19 8 41547821 41547821 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ANK1 NM_001142446 exon34 c.T4151A p.L1384Q TTGCGCAGAAACG . 79.0 37.0 107.0 0.0 . 497 . . Atlas-SNP ST18 9705 hgsc.bcm.edu hg19 8 53050033 53050033 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ST18 NM_014682 exon18 c.C2179A p.P727T ATCCTGGTGTTGG . 114.0 39.0 127.0 0.0 . 212 . . Atlas-SNP RP1 6101 hgsc.bcm.edu hg19 8 55533794 55533794 + Missense_Mutation SNP C C G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . RP1 NM_006269 exon2 c.C268G p.H90D GGCAGGCACAGCA . 58.0 32.0 104.0 0.0 . 429 . . Atlas-SNP CHD7 55636 hgsc.bcm.edu hg19 8 61769252 61769252 + Silent SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CHD7 NM_017780 exon34 c.A7413G p.S2471S TGTCTCAACACCA . 140.0 70.0 153.0 0.0 . 534 . . Atlas-SNP PEX2 5828 hgsc.bcm.edu hg19 8 77895734 77895734 + Silent SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PEX2 NM_000318 exon4 c.T681A p.L227L ACCAGTAAGAGGA . 65.0 23.0 78.0 0.0 . 44 . . Atlas-SNP PEX2 5828 hgsc.bcm.edu hg19 8 77895736 77895736 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PEX2 NM_000318 exon4 c.C679T p.L227F CAGTAAGAGGAAT . 64.0 22.0 75.0 0.0 . 44 . . Atlas-SNP PEX2 5828 hgsc.bcm.edu hg19 8 77895737 77895737 + Silent SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PEX2 NM_000318 exon4 c.T678A p.P226P AGTAAGAGGAATA . 65.0 23.0 75.0 0.0 . 44 . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110471959 110471959 + Missense_Mutation SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PKHD1L1 NM_177531 exon47 c.A7140C p.E2380D GTTTGAAGCAAGA . 208.0 83.0 278.0 0.0 . 522 . . Atlas-SNP TSTA3 7264 hgsc.bcm.edu hg19 8 144698802 144698802 + Silent SNP T T G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TSTA3 NM_003313 exon2 c.A81C p.V27V ATCTGCTACCACC . 95.0 43.0 83.0 0.0 . 23 . . Atlas-SNP CNTLN 54875 hgsc.bcm.edu hg19 9 17309125 17309125 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CNTLN NM_017738 exon8 c.A1216T p.T406S AGTGTTACTAATC . 368.0 153.0 509.0 0.0 . 128 . . Atlas-SNP UBQLN1 29979 hgsc.bcm.edu hg19 9 86284174 86284174 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . UBQLN1 NM_053067 exon7 c.C1174A p.Q392K TGTTTTGCATCAG . 87.0 32.0 117.0 0.0 . 49 . . Atlas-SNP GARNL3 84253 hgsc.bcm.edu hg19 9 130106562 130106562 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . GARNL3 NM_032293 exon15 c.A1300G p.K434E TCACCCAAGTCAG . 178.0 79.0 230.0 0.0 . 83 . . Atlas-SNP NUP188 23511 hgsc.bcm.edu hg19 9 131763862 131763862 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . NUP188 NM_015354 exon35 c.G3898A p.G1300S GAGGATGGTGACT . 30.0 14.0 34.0 0.0 . 140 . . Atlas-SNP NELFB 25920 hgsc.bcm.edu hg19 9 140160781 140160781 + Splice_Site SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . . NM_015456 exon8 c.1000-2A>G . CCCTACAGGACAG . 94.0 36.0 128.0 0.0 . . . . Atlas-SNP ARMC3 219681 hgsc.bcm.edu hg19 10 23244758 23244758 + Silent SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ARMC3 NM_173081 exon4 c.C189T p.L63L AACCCTCCTTGAA . 171.0 88.0 213.0 0.0 . 102 . . Atlas-SNP SFTPA2 729238 hgsc.bcm.edu hg19 10 81317058 81317058 + Silent SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SFTPA2 NM_001098668 exon6 c.T654G p.G218G TCCCCGACCTGCA . 322.0 261.0 455.0 1.0 . 19 . . Atlas-SNP HPSE2 60495 hgsc.bcm.edu hg19 10 100992230 100992230 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . HPSE2 NM_001166246 exon2 c.T323A p.L108H GGCGAAAGTCCCC . 227.0 195.0 308.0 0.0 . 203 . . Atlas-SNP DEAF1 10522 hgsc.bcm.edu hg19 11 679715 679715 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . DEAF1 NM_021008 exon8 c.C1099A p.Q367K CGCCCTGGGCCGG . 29.0 5.0 27.0 0.0 . 47 . . Atlas-SNP CDKN1C 1028 hgsc.bcm.edu hg19 11 2906437 2906437 + Missense_Mutation SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CDKN1C NM_000076 exon1 c.G283A p.V95M CCTGCACCGTCTC . 54.0 17.0 52.0 0.0 . 4 . . Atlas-SNP NUP98 4928 hgsc.bcm.edu hg19 11 3721964 3721964 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . NUP98 NM_016320 exon24 c.A3618T p.L1206F GTGTTTTAATTTG . 139.0 34.0 120.0 0.0 . 149 . . Atlas-SNP OR51D1 390038 hgsc.bcm.edu hg19 11 4661505 4661505 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 OR51D1,NS,carcinoma,0,1 OR51D1 NM_001004751 exon1 c.T485A p.L162Q CTGCCCTGACCAG . 69.0 24.0 66.0 0.0 . 49 . . Atlas-SNP OR51F1 256892 hgsc.bcm.edu hg19 11 4790465 4790465 + Missense_Mutation SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . OR51F1 NM_001004752 exon1 c.T683G p.L228R ATTCTGAGGACAG . 185.0 56.0 167.0 0.0 . 60 . . Atlas-SNP CNGA4 1262 hgsc.bcm.edu hg19 11 6261357 6261357 + Silent SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CNGA4 NM_001037329 exon4 c.C333T p.R111R CGTTCGCACCTGG . 75.0 23.0 75.0 0.0 . 96 . . Atlas-SNP CCKBR 887 hgsc.bcm.edu hg19 11 6292577 6292577 + Missense_Mutation SNP C C T rs201876764 TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 CCKBR_ENST00000525462,neck,malignant_melanoma,0,2 CCKBR NM_176875 exon5 c.C1148T p.A383V CCTCGGCCTGTGT . 97.0 30.0 94.0 0.0 . 232 . . Atlas-SNP OR5B12 390191 hgsc.bcm.edu hg19 11 58207528 58207528 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . OR5B12 NM_001004733 exon1 c.T97A p.Y33N TGAGGTAGATGAA . 155.0 40.0 160.0 0.0 . 80 . . Atlas-SNP ZFP91 80829 hgsc.bcm.edu hg19 11 58347078 58347078 + Silent SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZFP91 NM_001197051 exon1 c.G324A p.K108K GGGCAAGAAGAGT . 47.0 12.0 41.0 0.0 . 66 . . Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76858873 76858873 + Silent SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MYO7A NM_001127179 exon4 c.G162A p.T54T CGCAACGCACATC . 82.0 48.0 91.0 0.0 . 164 . . Atlas-SNP NOX4 50507 hgsc.bcm.edu hg19 11 89182674 89182674 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . NOX4 NM_001143836 exon4 c.A283T p.R95W ATCTCCTGGTTCT . 318.0 107.0 242.0 0.0 . 101 . . Atlas-SNP SESN3 143686 hgsc.bcm.edu hg19 11 94906456 94906456 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SESN3 NM_144665 exon10 c.T1442C p.L481P GCATAAAGAAGTT . 151.0 37.0 132.0 0.0 . 51 . . Atlas-SNP PGR 5241 hgsc.bcm.edu hg19 11 100999049 100999049 + Silent SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PGR NM_000926 exon1 c.A753G p.G251G GGCTCCTCCTCCA . 31.0 7.0 41.0 0.0 . 115 . . Atlas-SNP PVRL1 5818 hgsc.bcm.edu hg19 11 119508959 119508959 + Splice_Site SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PVRL1 NM_203285 exon9 c.1228-2A>T . ACAACCTGGAAGA . 50.0 9.0 35.0 0.0 . 133 . . Atlas-SNP OR6M1 390261 hgsc.bcm.edu hg19 11 123676307 123676307 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . OR6M1 NM_001005325 exon1 c.A751T p.S251C TGTTGCTCCCGTG . 103.0 34.0 84.0 0.0 . 60 . . Atlas-SNP ACAD8 27034 hgsc.bcm.edu hg19 11 134131002 134131002 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ACAD8 NM_014384 exon7 c.A770G p.N257S TGGCCAACAGAAT . 119.0 29.0 112.0 0.0 . 33 . . Atlas-SNP ERC1 23085 hgsc.bcm.edu hg19 12 1192437 1192437 + Silent SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ERC1 NM_178039 exon3 c.A777C p.V259V TTGTGTAGCAGAG . 70.0 15.0 98.0 0.0 . 95 . . Atlas-SNP CACNA2D4 93589 hgsc.bcm.edu hg19 12 1994036 1994036 + Silent SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CACNA2D4 NM_172364 exon11 c.C1170A p.A390A TTGCTTGGCCTCT . 73.0 4.0 96.0 0.0 . 220 . . Atlas-SNP FKBP4 2288 hgsc.bcm.edu hg19 12 2904411 2904411 + Splice_Site SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . FKBP4 NM_002014 exon1 c.105+1G>A . CTGAAGGTGAGGG . 135.0 53.0 185.0 0.0 . 29 . . Atlas-SNP OR8S1 341568 hgsc.bcm.edu hg19 12 48919696 48919696 + Silent SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . OR8S1 NM_001005203 exon1 c.A282G p.V94V TTCAGTAGAGGGC . 69.0 29.0 98.0 0.0 . 47 . . Atlas-SNP KRT80 144501 hgsc.bcm.edu hg19 12 52579367 52579367 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KRT80 NM_182507 exon2 c.A305T p.Q102L AGGGCTTGCACCT . 14.0 6.0 16.0 0.0 . 68 . . Atlas-SNP KRT7 3855 hgsc.bcm.edu hg19 12 52635357 52635357 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KRT7 NM_005556 exon5 c.G795T p.K265N GGTCAAGGCGCAG . 57.0 22.0 85.0 0.0 . 48 . . Atlas-SNP KIF5A 3798 hgsc.bcm.edu hg19 12 57963063 57963063 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . KIF5A NM_004984 exon10 c.A844T p.S282C CGTGACAGCAAAA . 82.0 35.0 104.0 0.0 . 143 . . Atlas-SNP ATP2B1 490 hgsc.bcm.edu hg19 12 89998055 89998055 + Silent SNP G G A rs112647159 TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ATP2B1 NM_001001323 exon15 c.C2511T p.S837S AACAATGCTTGTA . 135.0 56.0 187.0 0.0 . 191 . G|0.500;A|0.500 Atlas-SNP CRADD 8738 hgsc.bcm.edu hg19 12 94243784 94243784 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CRADD NM_003805 exon3 c.A337T p.S113C CTCAACAGCTCCC . 74.0 31.0 92.0 0.0 . 21 . . Atlas-SNP TMCC3 57458 hgsc.bcm.edu hg19 12 94972248 94972248 + Silent SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TMCC3 NM_020698 exon3 c.A1053T p.T351T GTTGGCTGTCTCA . 52.0 31.0 88.0 0.0 . 63 . . Atlas-SNP C12orf52 84934 hgsc.bcm.edu hg19 12 113629261 113629261 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . C12orf52 NM_032848 exon4 c.G449T p.G150V CCAGGGGTAGCCA . 46.0 16.0 59.0 0.0 . 19 . . Atlas-SNP NOS1 4842 hgsc.bcm.edu hg19 12 117655927 117655927 + Nonsense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . NOS1 NM_001204218 exon29 c.C4315T p.R1439X ACGTTCGCAGGGT . 144.0 43.0 179.0 0.0 . 240 . . Atlas-SNP RNF6 6049 hgsc.bcm.edu hg19 13 26789149 26789149 + Silent SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . RNF6 NM_183043 exon5 c.A870T p.T290T CCTCACTGTAACA . 105.0 38.0 127.0 0.0 . 68 . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 29008090 29008090 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . FLT1 NM_002019 exon6 c.A679T p.N227Y TTGTATTGGCTGC . 143.0 69.0 213.0 0.0 . 393 . . Atlas-SNP TPP2 7174 hgsc.bcm.edu hg19 13 103288606 103288606 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TPP2 NM_003291 exon13 c.T1542A p.N514K TCAGAATACATCA . 167.0 61.0 204.0 0.0 . 124 . . Atlas-SNP SLC7A8 23428 hgsc.bcm.edu hg19 14 23635745 23635745 + Missense_Mutation SNP G G C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SLC7A8 NM_012244 exon2 c.C156G p.N52K GATGATGTTCCCT . 26.0 11.0 45.0 0.0 . 54 . . Atlas-SNP HEATR4 399671 hgsc.bcm.edu hg19 14 73989702 73989702 + Missense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . HEATR4 NM_203309 exon2 c.G155T p.S52I TGTGAGCTGAAGA . 86.0 36.0 125.0 0.0 . 126 . . Atlas-SNP ELMSAN1 91748 hgsc.bcm.edu hg19 14 74191982 74191982 + Missense_Mutation SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . . NM_194278 exon9 c.A2567G p.Q856R AGCTTCTGCACCA . 51.0 20.0 63.0 0.0 . . . . Atlas-SNP CPSF2 53981 hgsc.bcm.edu hg19 14 92609350 92609350 + Silent SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CPSF2 NM_017437 exon9 c.A852G p.V284V TTAGGTAGAATGG . 165.0 65.0 207.0 0.0 . 63 . . Atlas-SNP PPP1R13B 23368 hgsc.bcm.edu hg19 14 104206739 104206739 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PPP1R13B NM_015316 exon12 c.C2014T p.P672S TGGTGGGGCTGAG . 32.0 16.0 42.0 0.0 . 72 . . Atlas-SNP CEP170B 283638 hgsc.bcm.edu hg19 14 105349414 105349414 + Missense_Mutation SNP G G C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . . NM_001112726 exon8 c.G620C p.G207A TCCACGGCTTCCG . 25.0 13.0 56.0 0.0 . . . . Atlas-SNP JMJD7-PLA2G4B 8681 hgsc.bcm.edu hg19 15 42139617 42139617 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . JMJD7-PLA2G4B NM_005090 exon24 c.A2723G p.Q908R AGCTCCAGCCTCG . 42.0 16.0 60.0 0.0 . 90 . . Atlas-SNP SPTBN5 51332 hgsc.bcm.edu hg19 15 42185565 42185565 + Missense_Mutation SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SPTBN5 NM_016642 exon2 c.A26G p.H9R CGAATGTGGCCCG . 48.0 24.0 60.0 0.0 . 171 . . Atlas-SNP PLA2G4E 123745 hgsc.bcm.edu hg19 15 42342807 42342807 + Missense_Mutation SNP C C G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PLA2G4E NM_001206670 exon1 c.G95C p.G32A CTTCTTCCTGACC . 91.0 44.0 113.0 0.0 . 60 . . Atlas-SNP FSD2 123722 hgsc.bcm.edu hg19 15 83437679 83437679 + Silent SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . FSD2 NM_001007122 exon9 c.T1506C p.T502T CTCCACAGTGTAC . 75.0 34.0 65.0 0.0 . 45 . . Atlas-SNP MRPL46 26589 hgsc.bcm.edu hg19 15 89008827 89008827 + Missense_Mutation SNP G G C rs146169028 alternate_allele TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MRPL46 NM_022163 exon2 c.C406G p.R136G TTATGCGAGCTCC . 57.0 22.0 64.0 0.0 . 13 . G|1.000;A|0.000 Atlas-SNP ZNF174 7727 hgsc.bcm.edu hg19 16 3458764 3458764 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZNF174 NM_003450 exon3 c.G1069A p.G357R ACGTGCGGAGAGT . 77.0 33.0 134.0 0.0 . 32 . . Atlas-SNP SCNN1G 6340 hgsc.bcm.edu hg19 16 23197855 23197855 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SCNN1G NM_001039 exon2 c.A263T p.H88L AAGTCCACTTCCG . 28.0 14.0 49.0 0.0 . 82 . . Atlas-SNP SIAH1 6477 hgsc.bcm.edu hg19 16 48395984 48395984 + Missense_Mutation SNP T T G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SIAH1 NM_001006610 exon2 c.A449C p.E150A CAGAGCTCTTCAT . 88.0 37.0 136.0 0.0 . 33 . . Atlas-SNP CDH11 1009 hgsc.bcm.edu hg19 16 65016064 65016064 + Silent SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 CDH11,colon,carcinoma,-1,1 CDH11 NM_001797 exon8 c.C1140T p.P380P CATAGGGGGCTCA . 58.0 43.0 125.0 0.0 . 260 . . Atlas-SNP AARS 16 hgsc.bcm.edu hg19 16 70299543 70299543 + Silent SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . AARS NM_001605 exon10 c.T1245C p.Y415Y GGTGTCATAGAGG . 43.0 32.0 127.0 0.0 . 62 . . Atlas-SNP ACAP1 9744 hgsc.bcm.edu hg19 17 7240643 7240643 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ACAP1 NM_014716 exon2 c.G66T p.E22D TATTGAGCTGGTG . 88.0 6.0 150.0 0.0 . 66 . . Atlas-SNP MYH3 4621 hgsc.bcm.edu hg19 17 10558329 10558329 + Missense_Mutation SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 .,1 MYH3 NM_002470 exon3 c.G53A p.R18Q GACTTCCGGAGGA . 47.0 2.0 111.0 0.0 . 227 . . Atlas-SNP TOP3A 7156 hgsc.bcm.edu hg19 17 18193874 18193874 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TOP3A NM_004618 exon13 c.A1594T p.I532F GACCAATGCCATG . 28.0 11.0 51.0 0.0 . 85 . . Atlas-SNP TBC1D28 254272 hgsc.bcm.edu hg19 17 18541690 18541690 + Missense_Mutation SNP C C T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TBC1D28 NM_001039397 exon8 c.G323A p.G108D GCCCGGCCCCGCA . 133.0 54.0 164.0 0.0 . 14 . . Atlas-SNP MAPK7 5598 hgsc.bcm.edu hg19 17 19284705 19284705 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MAPK7 NM_002749 exon4 c.A1183T p.I395F GAGGGCATCCGCC . 44.0 17.0 95.0 0.0 . 72 . . Atlas-SNP MLLT6 4302 hgsc.bcm.edu hg19 17 36868254 36868254 + Missense_Mutation SNP G G C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MLLT6 NM_005937 exon7 c.G707C p.R236T ACGAGAGGGGCCA . 121.0 55.0 181.0 0.0 . 80 . . Atlas-SNP STAC2 342667 hgsc.bcm.edu hg19 17 37371219 37371219 + Missense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . STAC2 NM_198993 exon6 c.G757T p.G253W CAGGCCCCTCCTC . 63.0 20.0 79.0 0.0 . 47 . . Atlas-SNP PLEKHM1 9842 hgsc.bcm.edu hg19 17 43545720 43545720 + Missense_Mutation SNP T T C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PLEKHM1 NM_014798 exon5 c.A1163G p.Q388R ACAGGCTGCTGTA . 118.0 39.0 174.0 0.0 . 69 . . Atlas-SNP C17orf47 284083 hgsc.bcm.edu hg19 17 56620661 56620661 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . C17orf47 NM_001038704 exon1 c.T887A p.L296H TTATGAAGAGACT . 189.0 55.0 169.0 0.0 . 59 . . Atlas-SNP BCAS3 54828 hgsc.bcm.edu hg19 17 59445783 59445783 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . BCAS3 NM_001099432 exon24 c.G2566A p.E856K ACGGAGGAGGGCC . 81.0 18.0 78.0 0.0 . 90 . . Atlas-SNP NPTX1 4884 hgsc.bcm.edu hg19 17 78450179 78450179 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . NPTX1 NM_002522 exon1 c.A68T p.Q23L AAATCCTGGGCCC . 40.0 13.0 32.0 0.0 . 28 . . Atlas-SNP MC4R 4160 hgsc.bcm.edu hg19 18 58039130 58039130 + Silent SNP G G A rs142925940 TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MC4R NM_005912 exon1 c.C453T p.I151I ATAGAAGATAGTA . 63.0 20.0 99.0 0.0 . 49 . G|1.000;A|0.000 Atlas-SNP CDH7 1005 hgsc.bcm.edu hg19 18 63530135 63530135 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CDH7 NM_004361 exon11 c.T1846A p.C616S CTCGCCTGTGTCT . 64.0 28.0 99.0 0.0 . 362 . . Atlas-SNP ABCA7 10347 hgsc.bcm.edu hg19 19 1052055 1052055 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ABCA7 NM_019112 exon22 c.G3077A p.R1026H TCCTGCGCCGTCA . 49.0 21.0 61.0 0.0 . 174 . . Atlas-SNP ZFR2 23217 hgsc.bcm.edu hg19 19 3820200 3820200 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZFR2 NM_015174 exon11 c.C1720A p.P574T TGGCGGGTGACTC . 52.0 20.0 84.0 0.0 . 63 . . Atlas-SNP ZNF101 94039 hgsc.bcm.edu hg19 19 19790802 19790802 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZNF101 NM_033204 exon4 c.A1004G p.E335G CTGGAGAAAGACC . 79.0 33.0 96.0 0.0 . 43 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 31038966 31038966 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZNF536 NM_014717 exon4 c.G2440T p.G814W CTGTCTGGGCAAC . 133.0 62.0 169.0 0.0 . 424 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 31038967 31038967 + Missense_Mutation SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 ZNF536,caecum,carcinoma,0,2 ZNF536 NM_014717 exon4 c.G2441T p.G814V TGTCTGGGCAACC . 130.0 58.0 169.0 0.0 . 424 . . Atlas-SNP TSHZ3 57616 hgsc.bcm.edu hg19 19 31768760 31768760 + Missense_Mutation SNP T T G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TSHZ3 NM_020856 exon2 c.A1939C p.S647R CGCTGCTACATGG . 48.0 21.0 74.0 0.0 . 549 . . Atlas-SNP ARHGAP33 115703 hgsc.bcm.edu hg19 19 36269405 36269405 + Missense_Mutation SNP C C T rs374221923 TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ARHGAP33 NM_052948 exon5 c.C310T p.R104C GACTTTCGTTCCC . 38.0 14.0 57.0 0.0 . 102 . . Atlas-SNP ZNF793 390927 hgsc.bcm.edu hg19 19 38024278 38024278 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZNF793 NM_001013659 exon7 c.G211A p.A71T GGTGAGGCAGCAT . 128.0 60.0 135.0 0.0 . 50 . . Atlas-SNP SERTAD3 29946 hgsc.bcm.edu hg19 19 40947776 40947776 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . SERTAD3 NM_013368 exon2 c.T212A p.L71Q GGAGCCAGGCGAA . 38.0 13.0 52.0 0.0 . 21 . . Atlas-SNP ZNF180 7733 hgsc.bcm.edu hg19 19 44981527 44981527 + Missense_Mutation SNP T T G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZNF180 NM_013256 exon5 c.A1171C p.S391R TCCGGCTGAAGGA . 82.0 37.0 93.0 0.0 . 103 . . Atlas-SNP PTGIR 5739 hgsc.bcm.edu hg19 19 47124692 47124692 + Missense_Mutation SNP G G A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PTGIR NM_000960 exon3 c.C1006T p.P336S CAGAGGGGGCCCT . 104.0 49.0 146.0 0.0 . 31 . . Atlas-SNP CACNG8 59283 hgsc.bcm.edu hg19 19 54485674 54485674 + Silent SNP G G T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CACNG8 NM_031895 exon4 c.G849T p.P283P CGAGCCGTCGCCG . 26.0 9.0 22.0 0.0 . 29 . . Atlas-SNP ZNF773 374928 hgsc.bcm.edu hg19 19 58018610 58018610 + Missense_Mutation SNP G G C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZNF773 NM_198542 exon4 c.G1147C p.G383R CACACTGGAGAAA . 128.0 55.0 221.0 0.0 . 62 . . Atlas-SNP CST9L 128821 hgsc.bcm.edu hg19 20 23548859 23548859 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CST9L NM_080610 exon1 c.T229C p.W77R CCTTCCAGGAATT . 101.0 25.0 82.0 0.0 . 25 . . Atlas-SNP PTPRT 11122 hgsc.bcm.edu hg19 20 40944529 40944529 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PTPRT NM_007050 exon12 c.T1973A p.L658H GAATCGAGGCTGG . 180.0 63.0 172.0 0.0 . 372 . . Atlas-SNP TUBB1 81027 hgsc.bcm.edu hg19 20 57599165 57599165 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TUBB1 NM_030773 exon4 c.T683A p.L228Q ACCACCTAGTGTC . 101.0 27.0 85.0 0.0 . 42 . . Atlas-SNP C21orf58 54058 hgsc.bcm.edu hg19 21 47722400 47722400 + Missense_Mutation SNP T T A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . C21orf58 NM_058180 exon7 c.A812T p.Q271L CCTACCTGCAGGG . 81.0 57.0 163.0 0.0 . 25 . . Atlas-SNP TCN2 6948 hgsc.bcm.edu hg19 22 31006953 31006953 + Missense_Mutation SNP A A G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . TCN2 NM_001184726 exon2 c.A160G p.I54V CCCAGCATCTATG . 76.0 29.0 112.0 0.0 . 44 . . Atlas-SNP PRDX4 10549 hgsc.bcm.edu hg19 X 23693213 23693213 + Missense_Mutation SNP C C G novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PRDX4 NM_006406 exon3 c.C466G p.H156D TTTACCCATTTGG . 577.0 228.0 695.0 0.0 . 17 . . Atlas-SNP PFKFB1 5207 hgsc.bcm.edu hg19 X 54982655 54982655 + Missense_Mutation SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . PFKFB1 NM_002625 exon7 c.T569G p.L190R TCTTCCAGAACCT . 78.0 9.0 120.0 0.0 . 64 . . Atlas-SNP DIAPH2 1730 hgsc.bcm.edu hg19 X 95940062 95940062 + Missense_Mutation SNP A A C novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . DIAPH2 NM_007309 exon1 c.A5C p.E2A AGATGGAGCAGCC . 166.0 73.0 217.0 0.0 . 148 . . Atlas-SNP MAGEC2 51438 hgsc.bcm.edu hg19 X 141291161 141291161 + Missense_Mutation SNP A A T novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . MAGEC2 NM_016249 exon3 c.T613A p.F205I CACAGAAGTGGTC . 137.0 60.0 171.0 0.0 . 102 . . Atlas-SNP GPR50 9248 hgsc.bcm.edu hg19 X 150349506 150349506 + Missense_Mutation SNP C C A novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . GPR50 NM_004224 exon2 c.C1451A p.A484D TCTCTGCTGGCAG . 57.0 22.0 81.0 0.0 . 195 . . Atlas-SNP ZNF233 353355 hgsc.bcm.edu hg19 19 44778799 44778799 + Frame_Shift_Del DEL G G - novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . ZNF233 NM_001207005 exon5 c.1985delT p.L662fs . . 37.0 21.0 73.0 0.0 . 73 . . Atlas-INDEL CDHR2 54825 hgsc.bcm.edu hg19 5 176016107 176016107 + Frame_Shift_Del DEL G G - novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . CDHR2 NM_001171976 exon22 c.2931delC p.D977fs . . 111.0 23.0 93.0 0.0 . 152 . . Atlas-Indel,Pindel BPIFA1 51297 hgsc.bcm.edu hg19 20 31828158 31828158 + Frame_Shift_Del DEL C C - novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . . NM_130852 exon5 c.547delT p.S183fs . . 73.0 17.0 79.0 0.0 . . . . Atlas-Indel,Pindel LINC00176 284739 hgsc.bcm.edu hg19 20 62670294 62670307 + RNA DEL GAGGCCCGCCCTCC GAGGCCCGCCCTCC - novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 GAGGCCCGCCCTCC GAGGCCCGCCCTCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . . . . . . . . 56.0 34.0 62.0 0.0 . . . . Atlas-Indel,Pindel DMRTC2 63946 hgsc.bcm.edu hg19 19 42353305 42353305 + Frame_Shift_Del DEL C C - novel TCGA-LG-A6GG-01A-11D-A30V-10 TCGA-LG-A6GG-10A-01D-A30V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 85af03fa-9e34-4b29-8897-d39a1b1773e2 b9ec4d89-18c3-4d18-b0cc-43cb9a086ec5 . DMRTC2 NM_001040283 exon6 c.735delG p.G245fs . . 65.0 29.0 62.0 0.0 . 31 . . Atlas-Indel,Pindel