Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PLOD1	5351	hgsc.bcm.edu	hg19	1	12023642	12023642	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PLOD1	NM_000302	exon11	c.A1151C	p.D384A	ATGCTGACGTGGC	.	49.0	12.0	61.0	0.0	.	75	.	.	Atlas-SNP
NCDN	23154	hgsc.bcm.edu	hg19	1	36024726	36024726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NCDN	NM_014284	exon2	c.A52T	p.M18L	AGCATCATGGCCT	.	138.0	68.0	166.0	0.0	.	79	.	.	Atlas-SNP
CAPZA1	829	hgsc.bcm.edu	hg19	1	113212621	113212621	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CAPZA1	NM_006135	exon10	c.T728G	p.I243S	CAGCAATTAGTGA	.	125.0	62.0	142.0	0.0	.	16	.	.	Atlas-SNP
XPR1	9213	hgsc.bcm.edu	hg19	1	180794056	180794056	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	XPR1	NM_004736	exon8	c.T931C	p.L311L	AGCAATTTGTCTC	.	111.0	16.0	53.0	0.0	.	76	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237670087	237670087	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RYR2	NM_001035	exon23	c.A2691G	p.K897K	GAATAAAATTGAG	.	86.0	25.0	40.0	0.0	.	1273	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11738866	11738866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	GREB1_ENST00000381486,NS,carcinoma,0,1	GREB1	NM_014668	exon15	c.A2213G	p.Y738C	AACAGTATGTTCT	.	67.0	17.0	70.0	0.0	.	308	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21229489	21229489	+	Silent	SNP	G	G	T	rs374560333	alternate_allele	TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	APOB	NM_000384	exon26	c.C10251A	p.T3417T	TTTCGTGGTTAAG	.	58.0	14.0	61.0	0.0	.	761	.	.	Atlas-SNP
CNGA3	1261	hgsc.bcm.edu	hg19	2	99012595	99012595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CNGA3	NM_001298	exon8	c.A962G	p.Y321C	GCATCTACTTTGC	.	82.0	50.0	105.0	0.0	.	118	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168108386	168108386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	XIRP2	NM_152381	exon9	c.G10484T	p.G3495V	GCCTGGGATATGC	.	52.0	15.0	76.0	0.0	.	914	.	.	Atlas-SNP
ABCB11	8647	hgsc.bcm.edu	hg19	2	169847362	169847362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ABCB11	NM_003742	exon9	c.C857T	p.S286L	ATTGATGAAATGA	.	47.0	22.0	64.0	0.0	.	136	.	.	Atlas-SNP
VIL1	7429	hgsc.bcm.edu	hg19	2	219305556	219305556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	VIL1	NM_007127	exon19	c.C2341T	p.P781S	GAGCTCCCCGAGG	.	86.0	39.0	86.0	0.0	.	65	.	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	hg19	2	228882606	228882606	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	SPHKAP_ENST00000392056,NS,carcinoma,0,2	SPHKAP	NM_030623	exon7	c.C2964T	p.S988S	GGTCCCGCTCCCC	.	48.0	14.0	77.0	0.0	.	750	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108117574	108117574	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MYH15	NM_014981	exon36	c.G5103A	p.R1701R	CAGGGACCTTAGA	.	43.0	14.0	61.0	0.0	.	223	.	.	Atlas-SNP
RUVBL1	8607	hgsc.bcm.edu	hg19	3	127831762	127831762	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RUVBL1	NM_003707	exon3	c.G330A	p.E110E	CAGCACCTCTGTC	.	59.0	11.0	120.0	0.0	.	38	.	.	Atlas-SNP
GRK7	131890	hgsc.bcm.edu	hg19	3	141497429	141497429	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GRK7	NM_139209	exon1	c.C303A	p.T101T	ACCCACCAAAGAC	.	68.0	20.0	94.0	0.0	.	65	.	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	hg19	3	154055628	154055628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GPR149	NM_001038705	exon4	c.A2056G	p.N686D	AGATATTAATATC	.	113.0	60.0	91.0	0.0	.	134	.	.	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	hg19	4	39905761	39905761	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PDS5A	NM_001100399	exon12	c.A1284G	p.K428K	ACAGTATTTCTTA	.	56.0	32.0	48.0	0.0	.	114	.	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	hg19	4	46066470	46066470	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GABRG1	NM_173536	exon5	c.G613C	p.E205Q	AAAATTCCAGTGG	.	319.0	90.0	344.0	0.0	.	172	.	.	Atlas-SNP
KDR	3791	hgsc.bcm.edu	hg19	4	55946235	55946235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	KDR	NM_002253	exon30	c.A3944G	p.D1315G	GTGGTGTCTGTGT	.	91.0	44.0	129.0	0.0	.	307	.	.	Atlas-SNP
NFKB1	4790	hgsc.bcm.edu	hg19	4	103518690	103518690	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NFKB1	NM_003998	exon15	c.A1509G	p.L503L	CTTTCTAGAGAAG	.	23.0	8.0	33.0	0.0	.	78	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19747162	19747162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CDH18	NM_001167667	exon4	c.C412A	p.P138T	CAAGAGGTTTGTT	.	106.0	54.0	105.0	0.0	.	561	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127744387	127744387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FBN2	NM_001999	exon8	c.C1058T	p.T353I	CCATCTGTTGAGG	.	271.0	107.0	221.0	0.0	.	858	.	.	Atlas-SNP
RREB1	6239	hgsc.bcm.edu	hg19	6	7231437	7231437	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RREB1	NM_001003700	exon10	c.C3105A	p.L1035L	AGCCCTCCTGAGT	.	47.0	12.0	41.0	0.0	.	242	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32163286	32163286	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NOTCH4	NM_004557	exon30	c.A5940G	p.S1980S	TTGAGGTGATCCC	.	61.0	7.0	84.0	0.0	.	201	.	.	Atlas-SNP
FIG4	9896	hgsc.bcm.edu	hg19	6	110098138	110098138	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FIG4	NM_014845	exon16	c.A1764G	p.Q588Q	TAGACAAGATTCC	.	98.0	4.0	98.0	0.0	.	77	.	.	Atlas-SNP
ECT2L	345930	hgsc.bcm.edu	hg19	6	139134461	139134461	+	Missense_Mutation	SNP	A	A	T	rs369742195	alternate_allele	TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ECT2L	NM_001195037	exon2	c.A50T	p.K17M	GCAACAAGTCATT	.	91.0	16.0	65.0	0.0	.	75	.	.	Atlas-SNP
C6orf120	387263	hgsc.bcm.edu	hg19	6	170102922	170102922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	C6orf120	NM_001029863	exon1	c.T367A	p.S123T	CACCCCTCCCACC	.	35.0	14.0	44.0	0.0	.	5	.	.	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	hg19	7	44555486	44555486	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NPC1L1	NM_013389	exon19	c.T3793A	p.F1265I	AGAAGAAGATCTG	.	75.0	55.0	90.0	0.0	.	141	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82451998	82451998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PCLO	NM_014510	exon20	c.G14604T	p.Q4868H	GGGAACCTGCATG	.	32.0	20.0	24.0	0.0	.	1506	.	.	Atlas-SNP
MDFIC	29969	hgsc.bcm.edu	hg19	7	114619638	114619638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MDFIC	NM_199072	exon4	c.G622C	p.G208R	AAGAACGGCCACA	.	156.0	19.0	150.0	0.0	.	30	.	.	Atlas-SNP
ADAM28	10863	hgsc.bcm.edu	hg19	8	24157559	24157559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ADAM28	NM_014265	exon2	c.A119G	p.H40R	CACTGCATAAAAG	.	23.0	17.0	28.0	0.0	.	100	.	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61654307	61654307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CHD7	NM_017780	exon2	c.C316T	p.H106Y	CAGTATCACACCC	.	119.0	29.0	82.0	0.0	.	534	.	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100883103	100883103	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	VPS13B	NM_017890	exon60	c.T11558G	p.V3853G	GCCATGTCAAATA	.	345.0	73.0	176.0	0.0	.	811	.	.	Atlas-SNP
TMEM71	137835	hgsc.bcm.edu	hg19	8	133734323	133734323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TMEM71	NM_144649	exon7	c.C658G	p.L220V	CAAGCAGGATTGC	.	710.0	308.0	415.0	1.0	.	55	.	.	Atlas-SNP
PSCA	8000	hgsc.bcm.edu	hg19	8	143763524	143763524	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PSCA	NM_005672	exon3	c.C319T	p.L107L	GGCCTGCTGCTCT	.	40.0	8.0	12.0	0.0	.	9	.	.	Atlas-SNP
GSN	2934	hgsc.bcm.edu	hg19	9	124065340	124065340	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GSN	NM_000177	exon3	c.C501G	p.Y167X	GAAGTACAAGGTG	.	38.0	10.0	27.0	0.0	.	81	.	.	Atlas-SNP
SLC39A12	221074	hgsc.bcm.edu	hg19	10	18289660	18289660	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	SLC39A12	NM_001145195	exon11	c.T1665C	p.D555D	TGCAGATGGCCTA	.	62.0	32.0	78.0	0.0	.	181	.	.	Atlas-SNP
FRMPD2	143162	hgsc.bcm.edu	hg19	10	49447719	49447719	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FRMPD2	NM_001018071	exon7	c.G717T	p.T239T	GGTCTCCGTGCTT	.	45.0	21.0	49.0	0.0	.	157	.	.	Atlas-SNP
NOX4	50507	hgsc.bcm.edu	hg19	11	89069106	89069106	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NOX4	NM_016931	exon17	c.T1523G	p.I508S	TCTCCAATTATCT	.	219.0	116.0	196.0	0.0	.	101	.	.	Atlas-SNP
GNPNAT1	64841	hgsc.bcm.edu	hg19	14	53245074	53245074	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GNPNAT1	NM_198066	exon6	c.T510C	p.Y170Y	TACAGTATATCCA	.	179.0	10.0	167.0	0.0	.	14	.	.	Atlas-SNP
CATSPER2	117155	hgsc.bcm.edu	hg19	15	43924421	43924421	+	Missense_Mutation	SNP	G	G	T	rs148790135	alternate_allele	TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CATSPER2	NM_172095	exon12	c.C1537A	p.R513S	TCTTACGTTCCTC	.	59.0	35.0	80.0	0.0	.	49	.	G|1.000;A|0.000	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	hg19	16	16139804	16139804	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ABCC1	NM_004996	exon9	c.C1152T	p.Y384Y	CCAGTACTTCCAC	.	101.0	12.0	86.0	0.0	.	156	.	.	Atlas-SNP
MLKL	197259	hgsc.bcm.edu	hg19	16	74708937	74708937	+	Silent	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MLKL	NM_152649	exon10	c.T1302G	p.G434G	GTCTTCACCCAGT	.	128.0	53.0	92.0	0.0	.	51	.	.	Atlas-SNP
MNT	4335	hgsc.bcm.edu	hg19	17	2290484	2290484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MNT	NM_020310	exon6	c.C1460A	p.P487H	CCAATGGGGGGTG	.	32.0	11.0	37.0	0.0	.	35	.	.	Atlas-SNP
KRTAP9-2	83899	hgsc.bcm.edu	hg19	17	39383271	39383271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	KRTAP9-2	NM_031961	exon1	c.A365G	p.Y122C	GCTACTACCCCAC	.	131.0	70.0	140.0	0.0	.	24	.	.	Atlas-SNP
LOC100653515	0	hgsc.bcm.edu	hg19	17	76887017	76887017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_001243540	exon3	c.G1569T	p.M523I	GTGTTCCATTTGT	.	40.0	22.0	49.0	0.0	.	.	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	8143692	8143692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PTPRM	NM_001105244	exon14	c.C2215T	p.H739Y	ACAGACCATACAG	.	81.0	22.0	68.0	0.0	.	185	.	.	Atlas-SNP
DENND1C	79958	hgsc.bcm.edu	hg19	19	6472968	6472968	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	DENND1C	NM_024898	exon15	c.G1090C	p.A364P	TCTGGGCCAAGAA	.	35.0	6.0	29.0	0.0	.	93	.	.	Atlas-SNP
ZNF792	126375	hgsc.bcm.edu	hg19	19	35449077	35449077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ZNF792	NM_175872	exon4	c.C1682T	p.P561L	TCGTAAGGCCTGT	.	173.0	75.0	148.0	0.0	.	46	.	.	Atlas-SNP
PRPF6	24148	hgsc.bcm.edu	hg19	20	62659867	62659867	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PRPF6	NM_012469	exon18	c.G2376A	p.L792L	GGGGCTGAAGAAC	.	40.0	14.0	44.0	0.0	.	88	.	.	Atlas-SNP
MORC3	23515	hgsc.bcm.edu	hg19	21	37736428	37736428	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MORC3	NM_015358	exon14	c.C1490A	p.S497X	CTCTTTCAACTCC	.	84.0	32.0	82.0	0.0	.	78	.	.	Atlas-SNP
TYMP	1890	hgsc.bcm.edu	hg19	22	50968105	50968105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TYMP	NM_001257989	exon2	c.C34T	p.P12S	CGGGTGGGGCCCC	.	57.0	27.0	110.0	0.0	.	25	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32486815	32486815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	DMD	NM_004006	exon23	c.T2962C	p.S988P	GCAGAGAACTTTG	.	140.0	115.0	124.0	0.0	.	2127	.	.	Atlas-SNP
CSTF2	1478	hgsc.bcm.edu	hg19	X	100086583	100086583	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CSTF2	NM_001325	exon9	c.A969G	p.G323G	GTTAGGAGATGCT	.	72.0	35.0	68.0	0.0	.	47	.	.	Atlas-SNP
FAM127A	8933	hgsc.bcm.edu	hg19	X	134166686	134166686	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FAM127A	NM_001078171	exon1	c.C273A	p.L91L	CCTCCTCAATGAT	.	129.0	50.0	136.0	0.0	.	21	.	.	Atlas-SNP
SSR4	6748	hgsc.bcm.edu	hg19	X	153060132	153060132	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	SSR4	NM_001204526	exon2	c.G23C	p.R8T	TAGGCAGAGAAGA	.	118.0	100.0	109.0	0.0	.	15	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93432956	93432959	+	Frame_Shift_Del	DEL	AAAC	AAAC	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	AAAC	AAAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	KIAA1731	NM_033395	exon15	c.4877_4880del	p.1626_1627del	.	.	50.0	12.0	76.0	0.0	.	173	.	.	Atlas-Indel,Pindel
TAF1B	9014	hgsc.bcm.edu	hg19	2	9994549	9994563	+	In_Frame_Del	DEL	CGGTAAGTCACAAGT	CGGTAAGTCACAAGT	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CGGTAAGTCACAAGT	CGGTAAGTCACAAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TAF1B	NM_005680	exon5	c.397_399del	p.133_133del	.	.	79.0	11.0	94.0	0.0	.	62	.	.	Atlas-Indel,Pindel
GBP5	115362	hgsc.bcm.edu	hg19	1	89726418	89726419	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GBP5	NM_052942	exon12	c.1730_1731del	p.577_577del	.	.	50.0	15.0	51.0	0.0	.	65	.	.	Atlas-Indel,Pindel
PODXL	5420	hgsc.bcm.edu	hg19	7	131193753	131193756	+	Frame_Shift_Del	DEL	CTCT	CTCT	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CTCT	CTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PODXL	NM_001018111	exon5	c.1056_1059del	p.352_353del	.	.	145.0	18.0	164.0	0.0	.	53	.	.	Atlas-INDEL
MSMO1	6307	hgsc.bcm.edu	hg19	4	166259057	166259058	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_006745	exon3	c.372_373insA	p.N124fs	.	.	68.0	31.0	63.0	0.0	.	.	.	.	Atlas-Indel,Pindel
PODXL	5420	hgsc.bcm.edu	hg19	7	131193749	131193751	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PODXL	NM_001018111	exon5	c.1061_1063del	p.354_355del	.	.	147.0	19.0	165.0	0.0	.	53	.	.	Atlas-INDEL
PODXL	5420	hgsc.bcm.edu	hg19	7	131193749	131193756	+	Frame_Shift_Del	DEL	CTCACTCT	CTCACTCT	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CTCACTCT	CTCACTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PODXL	NM_001018111	exon5	c.1056_1063del	p.352_355del	.	.	151.0	19.0	165.0	0.0	.	53	.	.	Pindel