Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
NPHP4	261734	hgsc.bcm.edu	hg19	1	5964775	5964775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	NPHP4,colon,carcinoma,0,1	NPHP4	NM_015102	exon16	c.G2045A	p.R682Q	TGCAGTCGTGGCG	.	297.0	33.0	210.0	2.0	.	119	.	.	Atlas-SNP
CELA3A	10136	hgsc.bcm.edu	hg19	1	22336295	22336295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CELA3A	NM_005747	exon7	c.T740C	p.I247T	ACTTCATCTGGAA	.	375.0	61.0	326.0	0.0	.	35	.	.	Atlas-SNP
C1QA	712	hgsc.bcm.edu	hg19	1	22965803	22965803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C1QA	NM_015991	exon3	c.A641T	p.Q214L	GTGACCAGGTCTG	.	123.0	23.0	95.0	0.0	.	31	.	.	Atlas-SNP
JUN	3725	hgsc.bcm.edu	hg19	1	59248012	59248012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	JUN	NM_002228	exon1	c.C731T	p.P244L	TCGATGGGGGACA	.	81.0	19.0	69.0	0.0	.	26	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94578571	94578571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ABCA4	NM_000350	exon2	c.A118G	p.I40V	ACCAGATCAAGAC	.	216.0	29.0	202.0	0.0	.	275	.	.	Atlas-SNP
EFNA3	1944	hgsc.bcm.edu	hg19	1	155057577	155057577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EFNA3	NM_004952	exon2	c.G139A	p.E47K	CGGCGAGAGGGCT	.	137.0	27.0	127.0	0.0	.	15	.	.	Atlas-SNP
CCT3	7203	hgsc.bcm.edu	hg19	1	156303388	156303388	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CCT3	NM_005998	exon5	c.G254C	p.R85P	TGGGTCCGGCTAA	.	55.0	5.0	52.0	0.0	.	61	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	176853524	176853524	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASTN1	NM_004319	exon19	c.C3177A	p.L1059L	TTGACGGAGGAGG	.	196.0	28.0	175.0	0.0	.	314	.	.	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	hg19	1	186909157	186909157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PLA2G4A	NM_024420	exon10	c.G964T	p.A322S	AATACTGCACAAT	.	70.0	14.0	73.0	0.0	.	125	.	.	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	hg19	1	201184848	201184848	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IGFN1	NM_001164586	exon15	c.G9177T	p.G3059G	CCTGGGGGATGGC	.	213.0	37.0	193.0	0.0	.	220	.	.	Atlas-SNP
RBBP5	5929	hgsc.bcm.edu	hg19	1	205065957	205065957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RBBP5	NM_005057	exon12	c.G1249A	p.G417S	GGGGGCCGTAAGG	.	124.0	22.0	111.0	0.0	.	45	.	.	Atlas-SNP
HHAT	55733	hgsc.bcm.edu	hg19	1	210847644	210847644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HHAT	NM_001170587	exon11	c.A1408T	p.T470S	TGGGTGACCCTCT	.	107.0	20.0	92.0	0.0	.	66	.	.	Atlas-SNP
CHRM3	1131	hgsc.bcm.edu	hg19	1	240071769	240071769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CHRM3	NM_000740	exon5	c.A1018G	p.N340D	AACAACAATGATG	.	185.0	26.0	167.0	0.0	.	118	.	.	Atlas-SNP
ZBTB18	10472	hgsc.bcm.edu	hg19	1	244217640	244217640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_205768	exon2	c.G564T	p.E188D	GGCCGAGCCTGGG	.	224.0	42.0	182.0	0.0	.	.	.	.	Atlas-SNP
NDUFAF7	55471	hgsc.bcm.edu	hg19	2	37474750	37474750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_144736	exon9	c.T1088C	p.M363T	AAAATATGGGTAT	.	110.0	17.0	98.0	0.0	.	.	.	.	Atlas-SNP
SOCS5	9655	hgsc.bcm.edu	hg19	2	46986955	46986955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	SOCS5,NS,carcinoma,0,3	SOCS5	NM_144949	exon2	c.G1286A	p.R429Q	ATGCCCGAATTGA	.	216.0	25.0	245.0	0.0	.	62	.	.	Atlas-SNP
WDR92	116143	hgsc.bcm.edu	hg19	2	68365900	68365900	+	Missense_Mutation	SNP	G	G	A	rs35021866		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WDR92	NM_001256476	exon5	c.C607T	p.R203W	CCCACCGTAATGC	.	117.0	9.0	119.0	0.0	.	21	.	G|0.983;A|0.017	Atlas-SNP
ITPRIPL1	150771	hgsc.bcm.edu	hg19	2	96992598	96992598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	ITPRIPL1,NS,lymphoid_neoplasm,0,2	ITPRIPL1	NM_178495	exon1	c.A253G	p.T85A	TTCTGGACAGGAG	.	138.0	18.0	130.0	0.0	.	58	.	.	Atlas-SNP
DDX18	8886	hgsc.bcm.edu	hg19	2	118575029	118575029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DDX18	NM_006773	exon2	c.A95G	p.N32S	CCTCAAATCTGAC	.	23.0	4.0	26.0	0.0	.	79	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179438598	179438598	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TTN	NM_001267550	exon326	c.G72261A	p.L24087L	GTTTACCAGATTA	.	127.0	14.0	123.0	0.0	.	18412	.	.	Atlas-SNP
PSMD1	5707	hgsc.bcm.edu	hg19	2	231927267	231927267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PSMD1	NM_002807	exon4	c.C182T	p.A61V	TTGCAGCCTTAGT	.	53.0	6.0	48.0	0.0	.	77	.	.	Atlas-SNP
HACL1	26061	hgsc.bcm.edu	hg19	3	15613198	15613198	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HACL1	NM_012260	exon12	c.A1072T	p.K358X	TGCTCTTCATTTT	.	47.0	7.0	62.0	0.0	.	33	.	.	Atlas-SNP
TBC1D5	9779	hgsc.bcm.edu	hg19	3	17349528	17349528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TBC1D5	NM_014744	exon14	c.T1094C	p.V365A	TAATCTACTAAAC	.	190.0	38.0	224.0	0.0	.	69	.	.	Atlas-SNP
ZNF445	353274	hgsc.bcm.edu	hg19	3	44492403	44492403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF445	NM_181489	exon5	c.G650A	p.G217E	TGGTCTCCCGGGC	.	125.0	9.0	110.0	0.0	.	91	.	.	Atlas-SNP
DPPA2	151871	hgsc.bcm.edu	hg19	3	109028174	109028174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DPPA2	NM_138815	exon4	c.A185G	p.H62R	AGTAGATGACCTA	.	111.0	18.0	73.0	0.0	.	52	.	.	Atlas-SNP
ILDR1	286676	hgsc.bcm.edu	hg19	3	121712594	121712594	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ILDR1	NM_001199799	exon7	c.A1002T	p.P334P	GATCAGTGGGGGC	.	201.0	21.0	185.0	0.0	.	120	.	.	Atlas-SNP
ACAD11	84129	hgsc.bcm.edu	hg19	3	132297694	132297694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ACAD11	NM_032169	exon15	c.A1720G	p.M574V	TGTTCATGGGAAC	.	67.0	10.0	80.0	0.0	.	78	.	.	Atlas-SNP
A4GNT	51146	hgsc.bcm.edu	hg19	3	137843669	137843669	+	Missense_Mutation	SNP	G	G	A	rs376190351	alternate_allele	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	A4GNT,colon,carcinoma,0,1	A4GNT	NM_016161	exon3	c.C460T	p.R154C	CCAGGCGGGATGC	.	137.0	21.0	138.0	0.0	.	42	.	.	Atlas-SNP
ATP1B3	483	hgsc.bcm.edu	hg19	3	141632520	141632520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ATP1B3	NM_001679	exon4	c.C373A	p.L125I	AAGAACCTCACAG	.	116.0	18.0	102.0	0.0	.	17	.	.	Atlas-SNP
PLSCR5	389158	hgsc.bcm.edu	hg19	3	146318107	146318107	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PLSCR5	NM_001085420	exon2	c.A157T	p.S53C	GGAGACTGACTGT	.	46.0	9.0	44.0	0.0	.	35	.	.	Atlas-SNP
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153840488	153840488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ARHGEF26	NM_001251962	exon2	c.G707T	p.S236I	TTTTGAGTACAAA	.	79.0	4.0	79.0	0.0	.	158	.	.	Atlas-SNP
VEPH1	79674	hgsc.bcm.edu	hg19	3	157188168	157188168	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	VEPH1	NM_001167911	exon3	c.T289A	p.F97I	TCCCAAAGGGTCT	.	151.0	24.0	141.0	0.0	.	129	.	.	Atlas-SNP
VEPH1	79674	hgsc.bcm.edu	hg19	3	157188169	157188169	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	VEPH1	NM_001167911	exon3	c.C288A	p.P96P	CCCAAAGGGTCTC	.	151.0	23.0	143.0	0.0	.	129	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3179109	3179109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HTT	NM_002111	exon34	c.G4458T	p.Q1486H	GGGCCAGTTCAGG	.	55.0	10.0	58.0	0.0	.	221	.	.	Atlas-SNP
RBPJ	3516	hgsc.bcm.edu	hg19	4	26426076	26426076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RBPJ	NM_005349	exon7	c.G648T	p.Q216H	ACAGCAGTGGGGA	.	83.0	7.0	65.0	0.0	.	78	.	.	Atlas-SNP
AASDH	132949	hgsc.bcm.edu	hg19	4	57216008	57216008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	AASDH	NM_181806	exon11	c.A1909G	p.T637A	TGAATGTCACATC	.	137.0	19.0	153.0	0.0	.	101	.	.	Atlas-SNP
MUC7	4589	hgsc.bcm.edu	hg19	4	71346647	71346647	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	MUC7,colon,carcinoma,0,1	MUC7	NM_001145007	exon4	c.C186T	p.S62S	AAAGTCCTATAAA	.	161.0	30.0	161.0	0.0	.	91	.	.	Atlas-SNP
GUCY1B3	2983	hgsc.bcm.edu	hg19	4	156696144	156696144	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GUCY1B3	NM_000857	exon3	c.A102T	p.E34D	TGAAGAAGGACAG	.	30.0	4.0	41.0	0.0	.	65	.	.	Atlas-SNP
GUCY1B3	2983	hgsc.bcm.edu	hg19	4	156726268	156726268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GUCY1B3	NM_000857	exon13	c.C1723A	p.P575T	ATGTCTCCAGAAA	.	186.0	32.0	169.0	0.0	.	65	.	.	Atlas-SNP
SPOCK3	50859	hgsc.bcm.edu	hg19	4	168155168	168155168	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SPOCK3	NM_016950	exon2	c.A157T	p.K53X	CTTCCTTGTCATA	.	141.0	27.0	141.0	0.0	.	90	.	.	Atlas-SNP
SLC9A3	6550	hgsc.bcm.edu	hg19	5	481703	481703	+	Silent	SNP	G	G	A	rs200474984	bycluster	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC9A3	NM_004174	exon9	c.C1494T	p.I498I	GTGCCCGATCTGT	.	141.0	13.0	129.0	0.0	.	89	.	G|0.999;A|0.001	Atlas-SNP
RAI14	26064	hgsc.bcm.edu	hg19	5	34823722	34823722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RAI14	NM_001145525	exon17	c.A1784C	p.K595T	TGAATAAGGAGAA	.	151.0	30.0	121.0	0.0	.	100	.	.	Atlas-SNP
HTR1A	3350	hgsc.bcm.edu	hg19	5	63256701	63256701	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HTR1A	NM_000524	exon1	c.G846A	p.R282R	ACCTTGCCTCACC	.	132.0	19.0	105.0	0.0	.	128	.	.	Atlas-SNP
PAPD4	167153	hgsc.bcm.edu	hg19	5	78940987	78940987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PAPD4	NM_173797	exon9	c.C793T	p.P265S	AAAGTGCCAATTG	.	184.0	24.0	183.0	0.0	.	51	.	.	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	hg19	5	140175547	140175547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCDHA2	NM_031495	exon1	c.A998T	p.H333L	CAGGACATTGTAA	.	207.0	31.0	182.0	0.0	.	404	.	.	Atlas-SNP
FAM196B	100131897	hgsc.bcm.edu	hg19	5	169309899	169309899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FAM196B	NM_001129891	exon2	c.A1004G	p.N335S	TGGTGATTGTTAC	.	165.0	23.0	146.0	0.0	.	28	.	.	Atlas-SNP
TLX3	30012	hgsc.bcm.edu	hg19	5	170738472	170738472	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TLX3	NM_021025	exon3	c.C745T	p.Q249X	GCCTTCCAAAAGA	.	322.0	38.0	242.0	0.0	.	23	.	.	Atlas-SNP
CDYL	9425	hgsc.bcm.edu	hg19	6	4892439	4892439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CDYL	NM_004824	exon2	c.C517A	p.Q173K	CAGGGTCAGGAGG	.	126.0	24.0	113.0	0.0	.	74	.	.	Atlas-SNP
TMEM14C	51522	hgsc.bcm.edu	hg19	6	10728899	10728899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TMEM14C	NM_001165258	exon5	c.A226G	p.M76V	GGCATTATGGGAA	.	79.0	12.0	73.0	0.0	.	8	.	.	Atlas-SNP
MSH5	4439	hgsc.bcm.edu	hg19	6	31726633	31726633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MSH5	NM_025259	exon15	c.G1358A	p.S453N	CATGCAGTGTCAT	.	217.0	29.0	161.0	0.0	.	108	.	.	Atlas-SNP
HLA-DQA2	3118	hgsc.bcm.edu	hg19	6	32714164	32714164	+	Missense_Mutation	SNP	T	T	C	rs115121776	bycluster	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HLA-DQA2	NM_020056	exon4	c.T761C	p.L254P	AAGGGCTCTTATG	.	177.0	9.0	147.0	0.0	.	27	.	.	Atlas-SNP
KIF6	221458	hgsc.bcm.edu	hg19	6	39607439	39607439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIF6	NM_145027	exon4	c.G346A	p.D116N	CTCTGTCACTGTA	.	147.0	18.0	131.0	0.0	.	233	.	.	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	hg19	6	40360391	40360391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LRFN2	NM_020737	exon3	c.T1661C	p.M554T	CGCACCATGAGGA	.	95.0	11.0	85.0	0.0	.	133	.	.	Atlas-SNP
TNFRSF21	27242	hgsc.bcm.edu	hg19	6	47251729	47251729	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TNFRSF21	NM_014452	exon3	c.A1188T	p.K396N	CATGGATTTCTTC	.	124.0	14.0	114.0	0.0	.	61	.	.	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	hg19	7	92731170	92731170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	SAMD9,right_upper_lobe,carcinoma,0,1	SAMD9	NM_001193307	exon2	c.A4241G	p.Q1414R	CGAAGCTGATCTT	.	120.0	17.0	146.0	0.0	.	239	.	.	Atlas-SNP
FBXO24	26261	hgsc.bcm.edu	hg19	7	100192090	100192090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FBXO24	NM_012172	exon6	c.A992G	p.K331R	TGAGGAAGGTGTC	.	127.0	15.0	110.0	0.0	.	125	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131195912	131195912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PODXL	NM_001018111	exon2	c.A381C	p.K127N	TGCACTTTTTGTG	.	288.0	45.0	213.0	0.0	.	53	.	.	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	hg19	7	138564336	138564336	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIAA1549	NM_020910	exon12	c.T4293C	p.D1431D	CGTCTTATCTCCT	.	27.0	5.0	26.0	0.0	.	314	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52339318	52339318	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PXDNL	NM_144651	exon13	c.C1526G	p.A509G	GCAAGAGCTGTGG	.	53.0	9.0	33.0	0.0	.	414	.	.	Atlas-SNP
EYA1	2138	hgsc.bcm.edu	hg19	8	72234031	72234031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	EYA1,NS,lymphoid_neoplasm,0,2	EYA1	NM_172059	exon5	c.A356G	p.Q119R	GCTTGTTGCATTC	.	335.0	38.0	288.0	0.0	.	108	.	.	Atlas-SNP
ESRP1	54845	hgsc.bcm.edu	hg19	8	95676928	95676928	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ESRP1	NM_001122827	exon7	c.C648T	p.S216S	CAGCAGCAAGATG	.	190.0	18.0	137.0	0.0	.	148	.	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144892681	144892681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SCRIB	NM_015356	exon13	c.C1498G	p.P500A	AGTCTGGCTGGCA	.	151.0	20.0	109.0	0.0	.	192	.	.	Atlas-SNP
SH3GL2	6456	hgsc.bcm.edu	hg19	9	17789515	17789515	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SH3GL2	NM_003026	exon6	c.T591A	p.A197A	AATTGCTGAGTCA	.	91.0	19.0	66.0	0.0	.	60	.	.	Atlas-SNP
TJP2	9414	hgsc.bcm.edu	hg19	9	71836182	71836182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TJP2	NM_001170416	exon5	c.G815A	p.R272H	GCAGCCGCGGCCG	.	72.0	6.0	58.0	0.0	.	120	.	.	Atlas-SNP
GAPVD1	26130	hgsc.bcm.edu	hg19	9	128118132	128118132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GAPVD1	NM_015635	exon24	c.G4048A	p.D1350N	CTTCGCGACCAGT	.	221.0	35.0	214.0	0.0	.	124	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55581783	55581783	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	PCDH15_ENST00000417177,NS,carcinoma,-2,2	PCDH15	NM_001142763	exon35	c.T5724C	p.S1908S	TATTTGACTGTAC	.	71.0	8.0	98.0	0.0	.	1715	.	.	Atlas-SNP
LDB3	11155	hgsc.bcm.edu	hg19	10	88452294	88452294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LDB3	NM_001171610	exon8	c.C1066A	p.Q356K	ACAGTGCAAGACC	.	133.0	6.0	122.0	0.0	.	164	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6643111	6643111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DCHS1	NM_003737	exon21	c.C9796T	p.P3266S	CAACGGGTGAGCG	.	126.0	14.0	102.0	0.0	.	277	.	.	Atlas-SNP
ASCL3	56676	hgsc.bcm.edu	hg19	11	8959174	8959174	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASCL3	NM_020646	exon2	c.A535T	p.R179X	CAATTCTGAACAT	.	85.0	4.0	78.0	0.0	.	19	.	.	Atlas-SNP
EXT2	2132	hgsc.bcm.edu	hg19	11	44255728	44255728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EXT2	NM_000401	exon12	c.A1969G	p.M657V	GCTCATATGAACT	.	195.0	31.0	160.0	0.0	.	129	.	.	Atlas-SNP
ALX4	60529	hgsc.bcm.edu	hg19	11	44289129	44289129	+	Missense_Mutation	SNP	C	C	T	rs368050443		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	ALX4,right_upper_lobe,carcinoma,-1,1	ALX4	NM_021926	exon3	c.G821A	p.R274H	CCAAAACGCTCCC	.	206.0	33.0	107.0	0.0	.	58	.	.	Atlas-SNP
NR1H3	10062	hgsc.bcm.edu	hg19	11	47282864	47282864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NR1H3	NM_001251934	exon5	c.C590T	p.S197F	CCACATCCTTGCC	.	210.0	32.0	165.0	0.0	.	52	.	.	Atlas-SNP
GLYATL2	219970	hgsc.bcm.edu	hg19	11	58602018	58602018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GLYATL2	NM_145016	exon6	c.T769G	p.Y257D	GGAAATAAAATGG	.	75.0	15.0	74.0	0.0	.	40	.	.	Atlas-SNP
PLA2G16	11145	hgsc.bcm.edu	hg19	11	63365558	63365558	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PLA2G16	NM_001128203	exon3	c.A93G	p.G31G	CACATATCCATCG	.	271.0	42.0	268.0	0.0	.	12	.	.	Atlas-SNP
WNT1	7471	hgsc.bcm.edu	hg19	12	49374980	49374980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WNT1	NM_005430	exon4	c.T670C	p.S224P	GGGATGTCCGGCT	.	242.0	28.0	189.0	0.0	.	13	.	.	Atlas-SNP
OR6C68	403284	hgsc.bcm.edu	hg19	12	55886941	55886941	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OR6C68	NM_001005519	exon1	c.A780G	p.P260P	CAAGCCATCTGCA	.	76.0	15.0	109.0	0.0	.	36	.	.	Atlas-SNP
OR6C4	341418	hgsc.bcm.edu	hg19	12	55945800	55945800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OR6C4	NM_001005494	exon1	c.G790T	p.E264X	GCAAAAGAAGGAG	.	85.0	6.0	104.0	0.0	.	34	.	.	Atlas-SNP
DCTN2	10540	hgsc.bcm.edu	hg19	12	57929270	57929270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DCTN2	NM_001261412	exon4	c.G267T	p.E89D	AACCATCTCATAT	.	87.0	11.0	82.0	0.0	.	51	.	.	Atlas-SNP
TSPAN31	6302	hgsc.bcm.edu	hg19	12	58141073	58141073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TSPAN31	NM_005981	exon6	c.A633G	p.X211W	TCTATGAGACTTT	.	68.0	7.0	59.0	0.0	.	20	.	.	Atlas-SNP
C12orf74	338809	hgsc.bcm.edu	hg19	12	93100546	93100546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C12orf74	NM_001037671	exon2	c.A139T	p.T47S	ATCTCCACCTCGC	.	113.0	15.0	109.0	0.0	.	17	.	.	Atlas-SNP
DAO	1610	hgsc.bcm.edu	hg19	12	109283310	109283310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	DAO,right_lower_lobe,carcinoma,0,1	DAO	NM_001917	exon4	c.C375A	p.F125L	TATGTTCCCAGAT	.	125.0	11.0	97.0	0.0	.	58	.	.	Atlas-SNP
WDR66	144406	hgsc.bcm.edu	hg19	12	122396358	122396358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WDR66	NM_001178003	exon12	c.C1911A	p.N637K	TGAAAACAAACAA	.	139.0	17.0	111.0	0.0	.	143	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124402197	124402197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAH10	NM_207437	exon63	c.A10715G	p.E3572G	AGCTGGAGGAGCA	.	166.0	28.0	110.0	0.0	.	888	.	.	Atlas-SNP
FBRSL1	57666	hgsc.bcm.edu	hg19	12	133102386	133102386	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FBRSL1	NM_001142641	exon3	c.A556T	p.S186C	GCCACCAGCTCCC	.	185.0	27.0	147.0	0.0	.	47	.	.	Atlas-SNP
SLITRK5	26050	hgsc.bcm.edu	hg19	13	88328465	88328465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLITRK5	NM_015567	exon2	c.C822A	p.D274E	AAGGGACTTGGAC	.	121.0	17.0	93.0	0.0	.	192	.	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	hg19	14	42356745	42356745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	LRFN5,NS,carcinoma,0,1	LRFN5	NM_152447	exon3	c.T917C	p.L306P	CAACACTGAGGTG	.	122.0	15.0	130.0	0.0	.	269	.	.	Atlas-SNP
DNAAF2	55172	hgsc.bcm.edu	hg19	14	50100800	50100800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAAF2	NM_018139	exon1	c.G1068T	p.E356D	AGCGGGCTCCCGG	.	10.0	6.0	5.0	0.0	.	47	.	.	Atlas-SNP
YLPM1	56252	hgsc.bcm.edu	hg19	14	75245225	75245225	+	Missense_Mutation	SNP	A	A	G	rs376895690		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	YLPM1	NM_019589	exon2	c.A949G	p.K317E	GGACACAAAAAGG	.	235.0	43.0	242.0	0.0	.	298	.	.	Atlas-SNP
NEK9	91754	hgsc.bcm.edu	hg19	14	75567697	75567697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NEK9	NM_033116	exon16	c.A2000C	p.D667A	TCACCATCAGTGG	.	60.0	5.0	80.0	0.0	.	64	.	.	Atlas-SNP
PSMC1	5700	hgsc.bcm.edu	hg19	14	90730490	90730490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PSMC1	NM_002802	exon6	c.G571A	p.D191N	GGGTTGGACAACC	.	86.0	12.0	91.0	0.0	.	27	.	.	Atlas-SNP
FSIP1	161835	hgsc.bcm.edu	hg19	15	40031879	40031879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FSIP1	NM_152597	exon7	c.A767G	p.K256R	TTTCTCTTAATAA	.	25.0	6.0	30.0	0.0	.	53	.	.	Atlas-SNP
TCF12	6938	hgsc.bcm.edu	hg19	15	57212181	57212181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TCF12	NM_207036	exon2	c.A70G	p.S24G	GACTTCAGTGCGG	.	143.0	20.0	149.0	0.0	.	242	.	.	Atlas-SNP
ZNF592	9640	hgsc.bcm.edu	hg19	15	85327447	85327447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF592	NM_014630	exon4	c.G1541C	p.S514T	CCCACAGTGTTGC	.	196.0	34.0	154.0	0.0	.	95	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1254427	1254427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CACNA1H	NM_021098	exon10	c.C2420T	p.T807M	TCAACACGCTGAG	.	307.0	59.0	192.0	0.0	.	317	.	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	hg19	16	3298983	3298983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MEFV	NM_000243	exon4	c.G1282A	p.E428K	GATGCTCCAGCTG	.	72.0	17.0	55.0	0.0	.	170	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	20981196	20981196	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAH3	NM_017539	exon52	c.A8376G	p.P2792P	AGGGCCTGGTGGG	.	143.0	26.0	109.0	0.0	.	1142	.	.	Atlas-SNP
PHKG2	5261	hgsc.bcm.edu	hg19	16	30760208	30760208	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PHKG2	NM_001172432	exon2	c.A67T	p.K23X	TACCAGAAGTACG	.	214.0	33.0	186.0	0.0	.	29	.	.	Atlas-SNP
CTCF	10664	hgsc.bcm.edu	hg19	16	67655390	67655390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	CTCF,brainstem,primitive_neuroectodermal_tumour-medulloblastoma,0,1	CTCF	NM_006565	exon7	c.A1253G	p.Q418R	TTACCCAAAGTGG	.	122.0	18.0	118.0	0.0	.	193	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7576928	7576928	+	Splice_Site	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	TP53_ENST00000455263,NS,carcinoma,0,37	TP53	NM_000546	exon10	c.920-2A>G	.	CAGTGCTAGGAAA	.	193.0	38.0	173.0	1.0	.	33396	.	.	Atlas-SNP
MYH3	4621	hgsc.bcm.edu	hg19	17	10543955	10543955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MYH3	NM_002470	exon20	c.C2214A	p.D738E	CTTGCTGTCAATG	.	124.0	5.0	119.0	0.0	.	227	.	.	Atlas-SNP
PIP4K2B	8396	hgsc.bcm.edu	hg19	17	36955561	36955561	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIP4K2B	NM_003559	exon1	c.C117T	p.S39S	CGGCTCGCTGGCC	.	74.0	17.0	58.0	0.0	.	35	.	.	Atlas-SNP
HOXB7	3217	hgsc.bcm.edu	hg19	17	46685442	46685442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HOXB7	NM_004502	exon2	c.G416A	p.R139Q	CGGCCTCGTTTGC	.	85.0	10.0	74.0	0.0	.	15	.	.	Atlas-SNP
STARD6	147323	hgsc.bcm.edu	hg19	18	51851176	51851176	+	Silent	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	STARD6	NM_139171	exon6	c.A549C	p.I183I	TTCAATTATTGAT	.	118.0	10.0	111.0	0.0	.	19	.	.	Atlas-SNP
CD209	30835	hgsc.bcm.edu	hg19	19	7807945	7807945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CD209	NM_021155	exon7	c.C1195A	p.P399T	GGTTTGGGGTGGC	.	61.0	11.0	66.0	0.0	.	166	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9073366	9073366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MUC16	NM_024690	exon3	c.C14080T	p.L4694F	AGGCAAGTGGAAT	.	188.0	37.0	187.0	0.0	.	4315	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10602442	10602442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KEAP1	NM_012289	exon3	c.G1136T	p.G379V	TTCCTGCCGCCCA	.	112.0	14.0	75.0	0.0	.	182	.	.	Atlas-SNP
PIK3R2	5296	hgsc.bcm.edu	hg19	19	18279669	18279669	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIK3R2	NM_005027	exon15	c.G1942T	p.E648X	ATCCGCGAGAGCA	.	217.0	30.0	165.0	0.0	.	48	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	31040266	31040266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF536	NM_014717	exon4	c.G3740T	p.G1247V	TGGCGGGCCTGCC	.	85.0	17.0	81.0	0.0	.	424	.	.	Atlas-SNP
ATP4A	495	hgsc.bcm.edu	hg19	19	36048727	36048727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ATP4A	NM_000704	exon11	c.A1523T	p.D508V	CGCGGGTCCTCCA	.	120.0	15.0	87.0	0.0	.	123	.	.	Atlas-SNP
NFKBID	84807	hgsc.bcm.edu	hg19	19	36387302	36387302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NFKBID	NM_139239	exon7	c.G397A	p.V133I	AGAGAACTCCTGG	.	106.0	9.0	82.0	0.0	.	30	.	.	Atlas-SNP
ZNF790	388536	hgsc.bcm.edu	hg19	19	37310227	37310227	+	Missense_Mutation	SNP	C	C	G	rs375770964		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF790	NM_206894	exon5	c.G1019C	p.C340S	TCCTTACATTCAT	.	77.0	14.0	79.0	0.0	.	89	.	.	Atlas-SNP
ZNF546	339327	hgsc.bcm.edu	hg19	19	40520371	40520371	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF546	NM_178544	exon7	c.A1194T	p.S398S	TGGCTCATACCTT	.	80.0	13.0	101.0	0.0	.	93	.	.	Atlas-SNP
KPTN	11133	hgsc.bcm.edu	hg19	19	47983128	47983128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KPTN	NM_007059	exon8	c.C779A	p.A260D	TTGGCGGCCGAGA	.	88.0	4.0	50.0	0.0	.	34	.	.	Atlas-SNP
OSCAR	126014	hgsc.bcm.edu	hg19	19	54600387	54600387	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OSCAR	NM_130771	exon4	c.T147A	p.P49P	GACCCCAGGGGTC	.	93.0	16.0	95.0	0.0	.	22	.	.	Atlas-SNP
JAG1	182	hgsc.bcm.edu	hg19	20	10644621	10644621	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	JAG1	NM_000214	exon3	c.T429C	p.N143N	GGTGTCATTACTG	.	193.0	17.0	164.0	0.0	.	213	.	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	40980734	40980734	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	PTPRT,NS,carcinoma,0,1	PTPRT	NM_007050	exon10	c.C1752A	p.T584T	AATTTTGGTGGCA	.	139.0	10.0	102.0	0.0	.	372	.	.	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	hg19	20	56139664	56139664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCK1	NM_002591	exon8	c.C1313T	p.P438L	GTAGACCTGCTGG	.	40.0	7.0	30.0	0.0	.	95	.	.	Atlas-SNP
RANGAP1	5905	hgsc.bcm.edu	hg19	22	41652812	41652812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RANGAP1	NM_002883	exon8	c.G791A	p.R264Q	ACCTGCCGCAAGG	.	74.0	10.0	64.0	0.0	.	47	.	.	Atlas-SNP
IL1RAPL1	11141	hgsc.bcm.edu	hg19	X	29973747	29973747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL1RAPL1	NM_014271	exon11	c.C1901T	p.P634L	TACCTCCTACCGG	.	118.0	32.0	77.0	0.0	.	311	.	.	Atlas-SNP
AMER1	139285	hgsc.bcm.edu	hg19	X	63412208	63412208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_152424	exon2	c.A959T	p.K320I	AAGCTTTTCAGGG	.	58.0	6.0	45.0	0.0	.	.	.	.	Atlas-SNP
IL1RAPL2	26280	hgsc.bcm.edu	hg19	X	104999216	104999216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL1RAPL2	NM_017416	exon10	c.A1238G	p.Q413R	TGGACCAAGATAC	.	169.0	40.0	144.0	0.0	.	105	.	.	Atlas-SNP
ADH5	128	hgsc.bcm.edu	hg19	4	100003145	100003146	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ADH5	NM_000671	exon3	c.237_238insG	p.G79fs	.	.	191.0	29.0	192.0	0.0	.	23	.	.	Atlas-Indel,Pindel
MUC20	200958	hgsc.bcm.edu	hg19	3	195452975	195452978	+	Frame_Shift_Del	DEL	CCCA	CCCA	-	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	CCCA	CCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MUC20	NM_152673	exon3	c.987_990del	p.329_330del	.	.	453.0	44.0	411.0	0.0	.	84	.	.	Atlas-Indel,Pindel
PRB3	5544	hgsc.bcm.edu	hg19	12	11420457	11420583	+	Frame_Shift_Del	DEL	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	-	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	PRB3_ENST00000538488,caecum,carcinoma,0,2	PRB3	NM_006249	exon4	c.725_725del	p.242_242del	.	.	100.0	13.0	85.0	0.0	.	84	.	.	Pindel