Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CHD5 26038 hgsc.bcm.edu hg19 1 6214807 6214807 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . CHD5 NM_015557 exon5 c.G658A p.V220I TGGTGACCGTCTC . 118.0 34.0 134.0 0.0 . 267 . . Atlas-SNP KDM1A 23028 hgsc.bcm.edu hg19 1 23370953 23370953 + Missense_Mutation SNP G G C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . KDM1A NM_001009999 exon3 c.G551C p.G184A GTTCTGGAGGGTA . 114.0 19.0 109.0 0.0 . 49 . . Atlas-SNP COL8A2 1296 hgsc.bcm.edu hg19 1 36565003 36565003 + Silent SNP G G C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . COL8A2 NM_005202 exon2 c.C279G p.P93P GCCAGGGGGGCCA . 46.0 15.0 46.0 0.0 . 41 . . Atlas-SNP HIVEP3 59269 hgsc.bcm.edu hg19 1 42041241 42041241 + Silent SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . HIVEP3 NM_024503 exon5 c.G5181A p.P1727P CCTCGCCGGCTCC . 87.0 31.0 61.0 0.0 . 235 . . Atlas-SNP CYP4A22 284541 hgsc.bcm.edu hg19 1 47610597 47610597 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . CYP4A22 NM_001010969 exon9 c.C1177T p.L393F AGAGAGCTCAGCA . 174.0 55.0 169.0 0.0 . 60 . . Atlas-SNP L1TD1 54596 hgsc.bcm.edu hg19 1 62672399 62672399 + Silent SNP T T A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . L1TD1 NM_001164835 exon4 c.T99A p.T33T AGAAACTGATAAG . 371.0 27.0 324.0 0.0 . 114 . . Atlas-SNP FOXD3 27022 hgsc.bcm.edu hg19 1 63788897 63788897 + Silent SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . FOXD3 NM_012183 exon1 c.C168T p.D56D CCTGGACGAGGCG . 111.0 38.0 147.0 0.0 . 15 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 145075831 145075831 + Missense_Mutation SNP C C A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . PDE4DIP NM_022359 exon1 c.G32T p.R11L CGGCGGCGGCAGC . 220.0 25.0 182.0 0.0 . 817 . . Atlas-SNP CD5L 922 hgsc.bcm.edu hg19 1 157803090 157803090 + Missense_Mutation SNP C C A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e CD5L,right_upper_lobe,carcinoma,0,1 CD5L NM_005894 exon5 c.G931T p.D311Y CATTATCCAGCCA . 125.0 28.0 125.0 0.0 . 112 . . Atlas-SNP PRG4 10216 hgsc.bcm.edu hg19 1 186277296 186277296 + Silent SNP T T C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e PRG4,NS,carcinoma,0,1 PRG4 NM_005807 exon7 c.T2445C p.S815S CACCTCTGACAAG . 163.0 67.0 130.0 1.0 . 259 . . Atlas-SNP CNTN2 6900 hgsc.bcm.edu hg19 1 205027106 205027106 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . CNTN2 NM_005076 exon3 c.C128T p.P43L ACCAGCCCCTCAG . 181.0 54.0 213.0 0.0 . 116 . . Atlas-SNP NUP133 55746 hgsc.bcm.edu hg19 1 229631653 229631653 + Missense_Mutation SNP T T C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . NUP133 NM_018230 exon7 c.A961G p.T321A CATCGGTAATGTT . 28.0 9.0 33.0 0.0 . 111 . . Atlas-SNP LGALS8 3964 hgsc.bcm.edu hg19 1 236703931 236703931 + Missense_Mutation SNP T T C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . LGALS8 NM_006499 exon6 c.T413C p.L138P ACACTCTGGGCAT . 57.0 17.0 51.0 0.0 . 42 . . Atlas-SNP FOXN2 3344 hgsc.bcm.edu hg19 2 48602270 48602270 + Missense_Mutation SNP G G C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . FOXN2 NM_002158 exon7 c.G984C p.E328D GGATGAGGTATAT . 107.0 16.0 100.0 0.0 . 39 . . Atlas-SNP VPS54 51542 hgsc.bcm.edu hg19 2 64208898 64208898 + Missense_Mutation SNP G G T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . VPS54 NM_016516 exon3 c.C260A p.S87Y AAGTCAGATTCTC . 101.0 41.0 142.0 0.0 . 57 . . Atlas-SNP MOGS 7841 hgsc.bcm.edu hg19 2 74689306 74689306 + Missense_Mutation SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . MOGS NM_006302 exon4 c.C1610T p.A537V GGCAAGGCCTTTC . 119.0 32.0 137.0 0.0 . 58 . . Atlas-SNP BIN1 274 hgsc.bcm.edu hg19 2 127808484 127808484 + Missense_Mutation SNP G G T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . BIN1 NM_139343 exon17 c.C1466A p.S489Y GGAAGAGAGCTCT . 215.0 31.0 323.0 0.0 . 85 . . Atlas-SNP TMEFF2 23671 hgsc.bcm.edu hg19 2 192820997 192820997 + Nonsense_Mutation SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . TMEFF2 NM_016192 exon8 c.C853T p.Q285X GCTCCTGCATATT . 84.0 11.0 72.0 0.0 . 54 . . Atlas-SNP MTMR14 64419 hgsc.bcm.edu hg19 3 9739394 9739394 + Splice_Site SNP G G T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e MTMR14,NS,carcinoma,0,1 MTMR14 NM_001077525 exon18 c.1614-1G>T . GCCCCAGATCAGT . 57.0 29.0 50.0 0.0 . 43 . . Atlas-SNP CLCN2 1181 hgsc.bcm.edu hg19 3 184071474 184071474 + Missense_Mutation SNP T T A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . CLCN2 NM_004366 exon16 c.A1831T p.M611L CCAGCATTCGGCC . 82.0 22.0 68.0 0.0 . 74 . . Atlas-SNP C3orf43 255798 hgsc.bcm.edu hg19 3 196242031 196242031 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . C3orf43 NM_001077657 exon1 c.G50A p.R17K AGCAACCTTTTCA . 65.0 24.0 62.0 0.0 . 25 . . Atlas-SNP PIGZ 80235 hgsc.bcm.edu hg19 3 196674641 196674641 + Missense_Mutation SNP A A C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . PIGZ NM_025163 exon3 c.T1127G p.M376R AGAGGCATGAAGT . 246.0 77.0 269.0 0.0 . 34 . . Atlas-SNP NFXL1 152518 hgsc.bcm.edu hg19 4 47887522 47887522 + Missense_Mutation SNP G G T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . NFXL1 NM_152995 exon14 c.C1817A p.T606N CTGCCAGTCTGCT . 115.0 46.0 131.0 0.0 . 79 . . Atlas-SNP PAICS 10606 hgsc.bcm.edu hg19 4 57312864 57312864 + Missense_Mutation SNP T T G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . PAICS NM_001079525 exon4 c.T239G p.I80S TAGGTATTAAAAC . 234.0 61.0 208.0 0.0 . 21 . . Atlas-SNP SLC39A8 64116 hgsc.bcm.edu hg19 4 103265762 103265762 + Nonsense_Mutation SNP C C A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . SLC39A8 NM_022154 exon1 c.G58T p.G20X CCACTCCTCCGAG . 128.0 40.0 115.0 0.0 . 24 . . Atlas-SNP ANKRD50 57182 hgsc.bcm.edu hg19 4 125592001 125592001 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . ANKRD50 NM_020337 exon4 c.G2431A p.D811N CACTATCAATACT . 95.0 35.0 89.0 0.0 . 136 . . Atlas-SNP INTU 27152 hgsc.bcm.edu hg19 4 128625405 128625405 + Missense_Mutation SNP G G C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . INTU NM_015693 exon10 c.G1526C p.R509T ACATGAGGCGGCT . 80.0 18.0 74.0 0.0 . 92 . . Atlas-SNP ARHGAP10 79658 hgsc.bcm.edu hg19 4 148787952 148787952 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . ARHGAP10 NM_024605 exon7 c.G687A p.Q229Q ACTACAGATCAAC . 231.0 41.0 218.0 0.0 . 92 . . Atlas-SNP TRIML1 339976 hgsc.bcm.edu hg19 4 189061021 189061021 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . TRIML1 NM_178556 exon1 c.G309A p.K103K TGCCAAGGCGCTC . 138.0 46.0 135.0 0.0 . 126 . . Atlas-SNP PCDHA11 56138 hgsc.bcm.edu hg19 5 140250310 140250310 + Missense_Mutation SNP T T G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . PCDHA11 NM_018902 exon1 c.T1622G p.V541G CGGGCGTGCCGCC . 88.0 28.0 75.0 0.0 . 209 . . Atlas-SNP RBM27 54439 hgsc.bcm.edu hg19 5 145664265 145664265 + Silent SNP T T A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . RBM27 NM_018989 exon20 c.T3069A p.T1023T ATCCACTGAGACT . 393.0 169.0 277.0 0.0 . 119 . . Atlas-SNP KIF13A 63971 hgsc.bcm.edu hg19 6 17837188 17837188 + Missense_Mutation SNP T T A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . KIF13A NM_001105567 exon11 c.A1076T p.N359I TCCTCATTCACAA . 117.0 50.0 108.0 0.0 . 276 . . Atlas-SNP HLA-DQA1 3117 hgsc.bcm.edu hg19 6 32610000 32610000 + Missense_Mutation SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . HLA-DQA1 NM_002122 exon3 c.G583A p.G195S CACTGGGGCCTGG . 245.0 111.0 261.0 0.0 . 52 . . Atlas-SNP FRS3 10817 hgsc.bcm.edu hg19 6 41740590 41740590 + Missense_Mutation SNP G G T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e FRS3,colon,carcinoma,0,4 FRS3 NM_006653 exon5 c.C361A p.R121S TATTGCGGGTGAT . 76.0 4.0 76.0 0.0 . 53 . . Atlas-SNP USP49 25862 hgsc.bcm.edu hg19 6 41774615 41774615 + Nonsense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . USP49 NM_018561 exon4 c.G107A p.W36X CAGGCCCACACGG . 97.0 34.0 113.0 0.0 . 58 . . Atlas-SNP TTBK1 84630 hgsc.bcm.edu hg19 6 43222834 43222834 + Silent SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . TTBK1 NM_032538 exon7 c.C624T p.V208V CTCAGTCAATGCC . 107.0 14.0 86.0 0.0 . 124 . . Atlas-SNP AARS2 57505 hgsc.bcm.edu hg19 6 44272421 44272421 + Silent SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . AARS2 NM_020745 exon12 c.G1713A p.Q571Q TGAAGCCTGGCCC . 185.0 67.0 149.0 0.0 . 77 . . Atlas-SNP FAM46A 55603 hgsc.bcm.edu hg19 6 82461742 82461742 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . FAM46A NM_017633 exon2 c.C117T p.G39G GTCGCCGCCGCCG . 70.0 9.0 53.0 0.0 . 37 . . Atlas-SNP ZBTB2 57621 hgsc.bcm.edu hg19 6 151687782 151687782 + Missense_Mutation SNP T T C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . ZBTB2 NM_020861 exon3 c.A419G p.H140R AACTGATGATCTG . 132.0 41.0 131.0 0.0 . 30 . . Atlas-SNP THSD7A 221981 hgsc.bcm.edu hg19 7 11416199 11416199 + Silent SNP A A T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . THSD7A NM_015204 exon26 c.T4887A p.A1629A TCACCAAGCTAGA . 71.0 24.0 35.0 0.0 . 219 . . Atlas-SNP CCT6A 908 hgsc.bcm.edu hg19 7 56127966 56127966 + Missense_Mutation SNP A A G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . CCT6A NM_001762 exon10 c.A1070G p.E357G AGGGAGAAGAGAA . 139.0 58.0 149.0 0.0 . 44 . . Atlas-SNP WBSCR22 114049 hgsc.bcm.edu hg19 7 73097969 73097969 + Missense_Mutation SNP G G C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . WBSCR22 NM_001202560 exon1 c.G14C p.G5A CCCGCGGCCGGCG . 116.0 6.0 134.0 0.0 . 27 . . Atlas-SNP TMEM130 222865 hgsc.bcm.edu hg19 7 98445808 98445808 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . TMEM130 NM_001134450 exon8 c.C1179T p.V393V GCACCTGACCCCA . 269.0 100.0 302.0 0.0 . 54 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100679095 100679095 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . MUC17 NM_001040105 exon3 c.G4398A p.P1466P CACGCCGGTGGCC . 82.0 27.0 78.0 0.0 . 804 . . Atlas-SNP ST18 9705 hgsc.bcm.edu hg19 8 53074116 53074116 + Silent SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . ST18 NM_014682 exon14 c.G1413A p.V471V TTGCTTCACCAAA . 196.0 69.0 190.0 0.0 . 212 . . Atlas-SNP KCNB2 9312 hgsc.bcm.edu hg19 8 73848416 73848416 + Missense_Mutation SNP C C A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . KCNB2 NM_004770 exon3 c.C826A p.P276T ATCTTGCCGTACT . 171.0 69.0 140.0 0.0 . 228 . . Atlas-SNP TRPS1 7227 hgsc.bcm.edu hg19 8 116616728 116616728 + Missense_Mutation SNP T T C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . TRPS1 NM_014112 exon4 c.A1468G p.R490G AGCCCCTGGAAAG . 85.0 25.0 92.0 0.0 . 516 . . Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8500869 8500869 + Missense_Mutation SNP T T G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . PTPRD NM_002839 exon24 c.A2013C p.K671N AAGGTATTTGGTA . 127.0 63.0 195.0 0.0 . 1348 . . Atlas-SNP BNC2 54796 hgsc.bcm.edu hg19 9 16436852 16436852 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . BNC2 NM_017637 exon6 c.G1340A p.G447E GTCTTCCCACATG . 69.0 38.0 80.0 0.0 . 166 . . Atlas-SNP MTAP 4507 hgsc.bcm.edu hg19 9 21837985 21837985 + Missense_Mutation SNP G G C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e MTAP,NS,carcinoma,0,1 MTAP NM_002451 exon5 c.G426C p.E142D GGCTGAGCCGTTT . 67.0 33.0 110.0 0.0 . 23 . . Atlas-SNP SLC28A3 64078 hgsc.bcm.edu hg19 9 86894924 86894924 + Silent SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . SLC28A3 NM_001199633 exon16 c.G1794A p.G598G CACGGTCCCCGCA . 40.0 18.0 39.0 0.0 . 72 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 16979768 16979768 + Missense_Mutation SNP T T C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . CUBN NM_001081 exon39 c.A5749G p.S1917G GAATGCTAGGCCC . 63.0 11.0 68.0 0.0 . 515 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26432443 26432443 + Missense_Mutation SNP G G C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e MYO3A,NS,carcinoma,0,1 MYO3A NM_017433 exon21 c.G2329C p.D777H CTCTTAGATATGT . 137.0 13.0 133.0 0.0 . 371 . . Atlas-SNP TSPAN15 23555 hgsc.bcm.edu hg19 10 71244958 71244958 + Missense_Mutation SNP C C A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . TSPAN15 NM_012339 exon3 c.C344A p.T115N CCTTGACCTTCCG . 189.0 8.0 142.0 0.0 . 22 . . Atlas-SNP ENO4 387712 hgsc.bcm.edu hg19 10 118609206 118609206 + Silent SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . ENO4 NM_001242699 exon1 c.C129T p.T43T CTCCACCTTCTAC . 197.0 68.0 203.0 0.0 . 1 . . Atlas-SNP EBF3 253738 hgsc.bcm.edu hg19 10 131761727 131761727 + Silent SNP G G T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . EBF3 NM_001005463 exon2 c.C195A p.S65S GAAATTGGATTTC . 78.0 28.0 74.0 0.0 . 193 . . Atlas-SNP TOLLIP 54472 hgsc.bcm.edu hg19 11 1309926 1309926 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . TOLLIP NM_019009 exon4 c.C447T p.D149D CCACTTGTCCTCC . 72.0 26.0 89.0 0.0 . 25 . . Atlas-SNP OR52E4 390081 hgsc.bcm.edu hg19 11 5905748 5905748 + Missense_Mutation SNP T T C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . OR52E4 NM_001005165 exon1 c.T226C p.S76P GGTCTGTCCACAT . 63.0 13.0 73.0 0.0 . 65 . . Atlas-SNP DKK3 27122 hgsc.bcm.edu hg19 11 11990020 11990020 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . DKK3 NM_001018057 exon4 c.C450T p.D150D GTCCTCGTCGATG . 66.0 19.0 71.0 0.0 . 35 . . Atlas-SNP IGSF22 283284 hgsc.bcm.edu hg19 11 18733863 18733863 + Missense_Mutation SNP A A G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . IGSF22 NM_173588 exon15 c.T2164C p.W722R CCTTCCACTTCAT . 180.0 54.0 188.0 0.0 . 211 . . Atlas-SNP BTBD18 643376 hgsc.bcm.edu hg19 11 57513122 57513122 + Missense_Mutation SNP T T G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . BTBD18 NM_001145101 exon3 c.A623C p.K208T TTCCTCTTGAGCA . 128.0 47.0 99.0 0.0 . 26 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92087690 92087690 + Silent SNP T T C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . FAT3 NM_001008781 exon1 c.T2412C p.Y804Y CATCTATGACTTA . 92.0 34.0 84.0 0.0 . 1822 . . Atlas-SNP BCO2 83875 hgsc.bcm.edu hg19 11 112064319 112064319 + Missense_Mutation SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e BCO2,NS,carcinoma,+1,2 BCO2 NM_001256398 exon3 c.G416A p.R139Q AAAACCGAATTGT . 152.0 49.0 158.0 0.0 . 44 . . Atlas-SNP NXPE4 54827 hgsc.bcm.edu hg19 11 114453434 114453434 + Missense_Mutation SNP C C G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . . NM_001077639 exon3 c.G406C p.D136H GGAAATCCCCGCC . 131.0 31.0 135.0 0.0 . . . . Atlas-SNP OR8A1 390275 hgsc.bcm.edu hg19 11 124440405 124440405 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . OR8A1 NM_001005194 exon1 c.G441A p.L147L CCCTTTGCTTTAC . 65.0 20.0 57.0 0.0 . 61 . . Atlas-SNP ZCRB1 85437 hgsc.bcm.edu hg19 12 42717863 42717863 + Silent SNP T T A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . ZCRB1 NM_033114 exon2 c.A42T p.V14V GTTGGATACATAC . 114.0 32.0 127.0 0.0 . 20 . . Atlas-SNP LMBR1L 55716 hgsc.bcm.edu hg19 12 49491852 49491852 + Missense_Mutation SNP C C A rs367631047 alternate_allele TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . LMBR1L NM_018113 exon16 c.G1277T p.R426L TTGAAGCGTCCAA . 60.0 15.0 66.0 0.0 . 61 . . Atlas-SNP DHX37 57647 hgsc.bcm.edu hg19 12 125470692 125470692 + Nonsense_Mutation SNP C C A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . DHX37 NM_032656 exon2 c.G226T p.E76X TCTTCTCCTTCTT . 74.0 21.0 57.0 0.0 . 114 . . Atlas-SNP LTB4R 1241 hgsc.bcm.edu hg19 14 24785802 24785802 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . LTB4R NM_181657 exon2 c.G945A p.T315T CAGCACGCGCCGC . 31.0 10.0 25.0 0.0 . 18 . . Atlas-SNP NKX2-1 7080 hgsc.bcm.edu hg19 14 36986874 36986874 + Missense_Mutation SNP G G C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . NKX2-1 NM_001079668 exon3 c.C815G p.T272S CACCCGGTGCCCC . 217.0 28.0 228.0 0.0 . 21 . . Atlas-SNP CDKL1 8814 hgsc.bcm.edu hg19 14 50862544 50862544 + Missense_Mutation SNP A A G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . CDKL1 NM_004196 exon1 c.T46C p.Y16H CTCCATAGGATCC . 129.0 38.0 138.0 0.0 . 50 . . Atlas-SNP KIAA0317 9870 hgsc.bcm.edu hg19 14 75130767 75130767 + Nonsense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . KIAA0317 NM_001039479 exon19 c.G2204A p.W735X CAAAACCACCTCA . 91.0 26.0 91.0 0.0 . 68 . . Atlas-SNP C14orf80 283643 hgsc.bcm.edu hg19 14 105958483 105958483 + Missense_Mutation SNP A A T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . C14orf80 NM_001134876 exon3 c.A266T p.Q89L GCTCCCAGGGCTA . 58.0 20.0 44.0 0.0 . 19 . . Atlas-SNP AP4E1 23431 hgsc.bcm.edu hg19 15 51289823 51289823 + Missense_Mutation SNP A A G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . AP4E1 NM_007347 exon18 c.A2647G p.M883V AACAACATGGAAA . 89.0 18.0 69.0 0.0 . 78 . . Atlas-SNP EFTUD1 79631 hgsc.bcm.edu hg19 15 82444220 82444220 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . EFTUD1 NM_024580 exon18 c.G2575A p.A859T TACTGGCTTCTTT . 109.0 35.0 113.0 0.0 . 74 . . Atlas-SNP NLRC3 197358 hgsc.bcm.edu hg19 16 3613191 3613191 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . NLRC3 NM_178844 exon5 c.G1747A p.V583M CCTCCACGCTGCG . 118.0 43.0 103.0 0.0 . 103 . . Atlas-SNP SPN 6693 hgsc.bcm.edu hg19 16 29675716 29675716 + Missense_Mutation SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . SPN NM_001030288 exon2 c.G667A p.V223I CCCCAGGTCTCTA . 85.0 18.0 99.0 0.0 . 44 . . Atlas-SNP SETD1A 9739 hgsc.bcm.edu hg19 16 30982811 30982811 + Silent SNP C C A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . SETD1A NM_014712 exon13 c.C3129A p.S1043S CTCATCCTCCTCC . 96.0 4.0 89.0 0.0 . 143 . . Atlas-SNP KATNB1 10300 hgsc.bcm.edu hg19 16 57788908 57788908 + Missense_Mutation SNP A A C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . KATNB1 NM_005886 exon14 c.A1295C p.N432T TGCCAAATGTATG . 75.0 23.0 86.0 0.0 . 35 . . Atlas-SNP FHOD1 29109 hgsc.bcm.edu hg19 16 67263800 67263800 + Missense_Mutation SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . FHOD1 NM_013241 exon21 c.C3308T p.T1103I TCTGATGTATCAC . 94.0 27.0 86.0 0.0 . 86 . . Atlas-SNP CYBA 1535 hgsc.bcm.edu hg19 16 88713210 88713210 + Missense_Mutation SNP G G T rs373948664 alternate_allele TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . CYBA NM_000101 exon4 c.C240A p.F80L GGGCCCGAACAGC . 71.0 23.0 66.0 0.0 . 12 . . Atlas-SNP MYBBP1A 10514 hgsc.bcm.edu hg19 17 4451500 4451500 + Silent SNP A A G novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . MYBBP1A NM_014520 exon12 c.T1662C p.N554N GCTGTGATTCAAC . 59.0 14.0 67.0 0.0 . 69 . . Atlas-SNP SBNO2 22904 hgsc.bcm.edu hg19 19 1119995 1119995 + Missense_Mutation SNP T T C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . SBNO2 NM_014963 exon12 c.A1177G p.K393E CATTCTTGGCTTT . 68.0 11.0 74.0 0.0 . 112 . . Atlas-SNP DPP9 91039 hgsc.bcm.edu hg19 19 4683489 4683489 + Missense_Mutation SNP C C A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . DPP9 NM_139159 exon19 c.G2331T p.K777N ACCCACCTTGAAC . 110.0 31.0 121.0 0.0 . 59 . . Atlas-SNP MCOLN1 57192 hgsc.bcm.edu hg19 19 7593583 7593583 + Silent SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . MCOLN1 NM_020533 exon8 c.G978A p.L326L CCTGCTGCAGAAC . 102.0 37.0 82.0 0.0 . 54 . . Atlas-SNP ZNF442 79973 hgsc.bcm.edu hg19 19 12461659 12461659 + Missense_Mutation SNP G G C novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e ZNF442,NS,carcinoma,0,2 ZNF442 NM_030824 exon6 c.C740G p.P247R TAAATAGGGAAGG . 103.0 20.0 106.0 0.0 . 102 . . Atlas-SNP SLC25A42 284439 hgsc.bcm.edu hg19 19 19217109 19217109 + Missense_Mutation SNP G G A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . SLC25A42 NM_178526 exon6 c.G412A p.G138S TTCGCCGGCGCAC . 58.0 6.0 44.0 0.0 . 18 . . Atlas-SNP ZNF565 147929 hgsc.bcm.edu hg19 19 36686037 36686037 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . ZNF565 NM_001042474 exon3 c.G31A p.V11M TGGCCACGTCCCT . 178.0 64.0 187.0 0.0 . 46 . . Atlas-SNP CEACAM8 1088 hgsc.bcm.edu hg19 19 43093887 43093887 + Missense_Mutation SNP G G T rs142428970 bycluster;byfrequency;alternate_allele TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e CEACAM8,NS,carcinoma,0,1 CEACAM8 NM_001816 exon3 c.C425A p.P142Q GTCTCCGCTGTGC . 51.0 13.0 54.0 0.0 . 44 . G|1.000;A|0.000 Atlas-SNP MYPOP 339344 hgsc.bcm.edu hg19 19 46394252 46394252 + Missense_Mutation SNP C C T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . MYPOP NM_001012643 exon3 c.G829A p.A277T TGCCGGCCAGCTC . 101.0 44.0 88.0 0.0 . 23 . . Atlas-SNP KLK9 284366 hgsc.bcm.edu hg19 19 51507011 51507011 + Silent SNP C C T rs147491832 TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . KLK9 NM_012315 exon4 c.G552A p.S184S GCTGTCCGAGATG . 111.0 37.0 99.0 0.0 . 27 . C|1.000;T|0.000 Atlas-SNP VN1R2 317701 hgsc.bcm.edu hg19 19 53761895 53761895 + Silent SNP G G T novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . VN1R2 NM_173856 exon1 c.G267T p.G89G TGTGGGGCTGGAC . 150.0 49.0 133.0 0.0 . 71 . . Atlas-SNP OLIG2 10215 hgsc.bcm.edu hg19 21 34399755 34399755 + Silent SNP C C A novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . OLIG2 NM_005806 exon2 c.C585A p.S195S GCACTCCGCGCCC . 46.0 15.0 34.0 0.0 . 22 . . Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30748580 30748584 + Frame_Shift_Del DEL CAAGG CAAGG - novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 CAAGG CAAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . SRCAP NM_006662 exon34 c.7218_7222del p.2406_2408del . . 102.0 33.0 92.0 0.0 . 298 . . Atlas-INDEL RASGRF2 5924 hgsc.bcm.edu hg19 5 80388721 80388721 + Frame_Shift_Del DEL T T - novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . RASGRF2 NM_006909 exon10 c.1491delA p.L497fs . . 135.0 36.0 129.0 0.0 . 165 . . Atlas-INDEL TP73 7161 hgsc.bcm.edu hg19 1 3599744 3599744 + Frame_Shift_Del DEL G G - novel TCGA-GJ-A9DB-01A-11D-A36X-10 TCGA-GJ-A9DB-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84dd6525-b3f4-4225-854b-d8ea04ae087d 1feb671e-5b85-48f9-b96b-19e5a877a13e . TP73 NM_005427 exon3 c.185delT p.M62fs . . 84.0 25.0 110.0 0.0 . 54 . . Atlas-INDEL