Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PRDM2 7799 hgsc.bcm.edu hg19 1 14105806 14105806 + Missense_Mutation SNP C C T novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . PRDM2 NM_015866 exon8 c.C1516T p.H506Y AGAGTTCACGAAC . 39.0 13.0 82.0 0.0 . 147 . . Atlas-SNP COL24A1 255631 hgsc.bcm.edu hg19 1 86554879 86554879 + Missense_Mutation SNP G G A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . COL24A1 NM_152890 exon7 c.C1685T p.P562L CCAGGGGGGCCCA . 160.0 40.0 188.0 0.0 . 202 . . Atlas-SNP PGBD2 267002 hgsc.bcm.edu hg19 1 249211312 249211312 + Nonsense_Mutation SNP C C T novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . PGBD2 NM_170725 exon3 c.C529T p.Q177X ACGGCTCAGGAAT . 46.0 12.0 47.0 0.0 . 103 . . Atlas-SNP LHCGR 3973 hgsc.bcm.edu hg19 2 48950602 48950602 + Missense_Mutation SNP C C A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . LHCGR NM_000233 exon6 c.G529T p.V177L GTGTTACAGATTC . 55.0 11.0 82.0 0.0 . 154 . . Atlas-SNP FARSB 10056 hgsc.bcm.edu hg19 2 223494886 223494886 + Missense_Mutation SNP A A G novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . FARSB NM_005687 exon9 c.T794C p.I265T AGAACTATTTTTG . 111.0 36.0 143.0 0.0 . 49 . . Atlas-SNP TRPM8 79054 hgsc.bcm.edu hg19 2 234839334 234839334 + Missense_Mutation SNP G G A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . TRPM8 NM_024080 exon3 c.G139A p.A47T ATTCAAGCAAATT . 57.0 13.0 92.0 0.0 . 146 . . Atlas-SNP BOC 91653 hgsc.bcm.edu hg19 3 113005642 113005642 + Missense_Mutation SNP C C A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . BOC NM_033254 exon20 c.C3278A p.P1093H AGGAACCTGGAAT . 33.0 12.0 60.0 0.0 . 139 . . Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142275251 142275251 + Silent SNP A A C novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . ATR NM_001184 exon9 c.T2052G p.S684S GTTACAAGAATTC . 77.0 18.0 87.0 0.0 . 285 . . Atlas-SNP PCDHB5 26167 hgsc.bcm.edu hg19 5 140516880 140516880 + Missense_Mutation SNP G G C novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . PCDHB5 NM_015669 exon1 c.G1864C p.E622Q AATGGCGAGGTGC . 11.0 4.0 9.0 0.0 . 184 . . Atlas-SNP MFAP3 4238 hgsc.bcm.edu hg19 5 153429404 153429404 + Missense_Mutation SNP A A G novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . MFAP3 NM_005927 exon2 c.A122G p.N41S CTTACAATGCATC . 84.0 21.0 120.0 0.0 . 20 . . Atlas-SNP ESR1 2099 hgsc.bcm.edu hg19 6 152415519 152415519 + Splice_Site SNP G G A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . ESR1 NM_001122742 exon9 c.1370-1G>A . CATTCAGGAGTGT . 38.0 10.0 49.0 0.0 . 94 . . Atlas-SNP SAMD9 54809 hgsc.bcm.edu hg19 7 92733863 92733863 + Missense_Mutation SNP T T A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . SAMD9 NM_001193307 exon2 c.A1548T p.E516D AGCTCTTTCTCTT . 51.0 18.0 71.0 0.0 . 239 . . Atlas-SNP OR2F1 26211 hgsc.bcm.edu hg19 7 143657370 143657370 + Missense_Mutation SNP T T C novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . OR2F1 NM_012369 exon1 c.T307C p.F103L TTATTTTTCTCCC . 62.0 17.0 95.0 0.0 . 71 . . Atlas-SNP ADAMTSL1 92949 hgsc.bcm.edu hg19 9 18639393 18639393 + Missense_Mutation SNP C C T novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . ADAMTSL1 NM_052866 exon7 c.C818T p.A273V TCACAGCAGATTT . 44.0 16.0 56.0 0.0 . 306 . . Atlas-SNP IFNA14 3448 hgsc.bcm.edu hg19 9 21239523 21239523 + Missense_Mutation SNP C C A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . IFNA14 NM_002172 exon1 c.G412T p.D138Y TGGAGTCCTCATT . 47.0 18.0 103.0 0.0 . 29 . . Atlas-SNP KIF24 347240 hgsc.bcm.edu hg19 9 34310818 34310818 + Missense_Mutation SNP T T C novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . KIF24 NM_194313 exon2 c.A527G p.Y176C GAAAGGTAATTTG . 133.0 34.0 174.0 0.0 . 64 . . Atlas-SNP PTGR1 22949 hgsc.bcm.edu hg19 9 114348335 114348335 + Missense_Mutation SNP G G A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . PTGR1 NM_001146108 exon5 c.C320T p.T107I CACTCTGTCAGCA . 70.0 18.0 110.0 0.0 . 23 . . Atlas-SNP ARHGAP12 94134 hgsc.bcm.edu hg19 10 32150410 32150410 + Silent SNP C C G novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . ARHGAP12 NM_001270696 exon4 c.G861C p.G287G CTGTGTCCCTCTG . 121.0 29.0 122.0 0.0 . 79 . . Atlas-SNP MICU1 10367 hgsc.bcm.edu hg19 10 74326487 74326487 + Missense_Mutation SNP C C A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . . NM_001195518 exon2 c.G65T p.G22V GATCCTCCATGGT . 45.0 17.0 77.0 0.0 . . . . Atlas-SNP CYP2C8 1558 hgsc.bcm.edu hg19 10 96796969 96796969 + Silent SNP A A G novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . CYP2C8 NM_000770 exon9 c.T1389C p.D463D CTTTAAATCATCA . 64.0 16.0 92.0 0.0 . 73 . . Atlas-SNP ABLIM1 3983 hgsc.bcm.edu hg19 10 116417809 116417809 + Missense_Mutation SNP C C A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 ABLIM1_ENST00000336585,colon,carcinoma,0,1 ABLIM1 NM_002313 exon1 c.G151T p.A51S TATGAGCGGTGAA . 55.0 17.0 64.0 0.0 . 131 . . Atlas-SNP RARG 5916 hgsc.bcm.edu hg19 12 53609161 53609161 + Missense_Mutation SNP T T C novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . RARG NM_000966 exon5 c.A391G p.N131D TACAGTTTTTGTC . 25.0 6.0 39.0 0.0 . 53 . . Atlas-SNP CCDC169-SOHLH2 100526761 hgsc.bcm.edu hg19 13 36747869 36747869 + Silent SNP G G A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . . NM_001198910 exon14 c.C1191T p.S397S AGGAGTGGAGCAC . 38.0 9.0 50.0 0.0 . . . . Atlas-SNP NDRG2 57447 hgsc.bcm.edu hg19 14 21486186 21486186 + Silent SNP C C T novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . NDRG2 NM_201537 exon15 c.G909A p.L303L CTCGGTCAGCTTG . 27.0 15.0 29.0 0.0 . 37 . . Atlas-SNP ACAN 176 hgsc.bcm.edu hg19 15 89385015 89385015 + Missense_Mutation SNP A A G novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . ACAN NM_001135 exon5 c.A674G p.D225G ACAAGGATGAGTT . 34.0 17.0 44.0 0.0 . 220 . . Atlas-SNP CHD2 1106 hgsc.bcm.edu hg19 15 93510735 93510735 + Missense_Mutation SNP G G C novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . CHD2 NM_001271 exon17 c.G2181C p.Q727H GAAACAGTATTAC . 59.0 13.0 63.0 0.0 . 280 . . Atlas-SNP CREBBP 1387 hgsc.bcm.edu hg19 16 3830772 3830772 + Missense_Mutation SNP T T C novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . CREBBP NM_004380 exon8 c.A1784G p.H595R GTGACATGTTCGT . 43.0 10.0 73.0 0.0 . 546 . . Atlas-SNP N4BP1 9683 hgsc.bcm.edu hg19 16 48595832 48595832 + Missense_Mutation SNP C C A rs374516858 alternate_allele TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 N4BP1_ENST00000262384,NS,carcinoma,0,2 N4BP1 NM_153029 exon2 c.G722T p.G241V GGAGTCCCAGCTT . 81.0 24.0 129.0 0.0 . 121 . . Atlas-SNP BRCA1 672 hgsc.bcm.edu hg19 17 41245778 41245778 + Silent SNP A A G novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . BRCA1 NM_007300 exon10 c.T1770C p.S590S GCTTATACTGCTG . 136.0 13.0 173.0 0.0 . 304 . . Atlas-SNP ZNF616 90317 hgsc.bcm.edu hg19 19 52618825 52618825 + Missense_Mutation SNP C C A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . ZNF616 NM_178523 exon4 c.G1592T p.S531I CGGTCACTGAAGA . 58.0 10.0 61.0 0.0 . 109 . . Atlas-SNP GNAS 2778 hgsc.bcm.edu hg19 20 57484420 57484420 + Missense_Mutation SNP C C T rs11554273 bycluster TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 GNAS_ENST00000371100,NS,adenocarcinoma,0,338 GNAS NM_080425 exon8 c.C2530T p.R844C CGCTGCCGTGTCC . 46.0 18.0 74.0 0.0 . 867 . C|1.000 Atlas-SNP DGCR6L 85359 hgsc.bcm.edu hg19 22 20307214 20307214 + Silent SNP G G A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . DGCR6L NM_033257 exon2 c.C219T p.L73L TTCGGTGAGGTGC . 54.0 9.0 73.0 0.0 . 9 . . Atlas-SNP TMEM187 8269 hgsc.bcm.edu hg19 X 153247691 153247691 + Missense_Mutation SNP G G A novel TCGA-G3-A7M7-01A-12D-A34Z-10 TCGA-G3-A7M7-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e2d5d14-93c7-44fb-bee9-d6bf7c286368 3a264183-655d-4ab5-ade1-24ffbfd0cdb0 . TMEM187 NM_003492 exon2 c.G178A p.V60M TCACTCGTGAACA . 36.0 23.0 38.0 0.0 . 21 . . Atlas-SNP