Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MTOR 2475 hgsc.bcm.edu hg19 1 11317091 11317091 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . MTOR NM_004958 exon4 c.A403G p.M135V CTGCCATGGCAAG . 231.0 157.0 603.0 2.0 . 327 . . Atlas-SNP UBR4 23352 hgsc.bcm.edu hg19 1 19483269 19483269 + Missense_Mutation SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . UBR4 NM_020765 exon41 c.G5911A p.G1971R TTAGCCCACAAAC . 163.0 82.0 352.0 0.0 . 415 . . Atlas-SNP HS2ST1 9653 hgsc.bcm.edu hg19 1 87563544 87563544 + Missense_Mutation SNP A A C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . HS2ST1 NM_012262 exon5 c.A612C p.E204D AGCAGAAGGTGGC . 121.0 17.0 258.0 0.0 . 43 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94577092 94577092 + Silent SNP C C T rs201725352 TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ABCA4 NM_000350 exon3 c.G204A p.P68P GAGCCACGGCAGC . 89.0 44.0 170.0 0.0 . 275 . C|0.999;T|0.001 Atlas-SNP LRIG2 9860 hgsc.bcm.edu hg19 1 113635842 113635842 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . LRIG2 NM_014813 exon3 c.A320G p.N107S ATTACAATGAACT . 122.0 26.0 245.0 0.0 . 67 . . Atlas-SNP NOTCH2NL 388677 hgsc.bcm.edu hg19 1 145281400 145281400 + Silent SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . NOTCH2NL NM_203458 exon4 c.G330T p.L110L CTGCCTGTCTCAT . 1094.0 78.0 2309.0 0.0 . 100 . . Atlas-SNP MAEL 84944 hgsc.bcm.edu hg19 1 166990985 166990985 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . MAEL NM_032858 exon12 c.A1198G p.I400V GAGAGCATTTCCA . 153.0 44.0 395.0 0.0 . 95 . . Atlas-SNP LYST 1130 hgsc.bcm.edu hg19 1 235964399 235964399 + Splice_Site SNP T T A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . LYST NM_000081 exon10 c.3713-2A>T . TACCCCTGAAAAG . 19.0 7.0 48.0 0.0 . 370 . . Atlas-SNP CHRM3 1131 hgsc.bcm.edu hg19 1 240072344 240072344 + Missense_Mutation SNP G G C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . CHRM3 NM_000740 exon5 c.G1593C p.W531C CTACTGGCTGTGC . 96.0 32.0 367.0 0.0 . 118 . . Atlas-SNP CLIP4 79745 hgsc.bcm.edu hg19 2 29366660 29366660 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . CLIP4 NM_024692 exon7 c.A734G p.K245R CTGCTAAGGAAAT . 146.0 41.0 371.0 0.0 . 69 . . Atlas-SNP XDH 7498 hgsc.bcm.edu hg19 2 31609400 31609400 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . XDH NM_000379 exon9 c.A673G p.K225E GCTGCTTCCGAGG . 60.0 19.0 172.0 0.0 . 191 . . Atlas-SNP XDH 7498 hgsc.bcm.edu hg19 2 31609402 31609402 + Missense_Mutation SNP C C G rs112466737 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . XDH NM_000379 exon9 c.G671C p.R224P TGCTTCCGAGGAG . 59.0 20.0 170.0 0.0 . 191 . C|0.999;T|0.001 Atlas-SNP EMX1 2016 hgsc.bcm.edu hg19 2 73160942 73160942 + Silent SNP G G A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 EMX1,bladder,carcinoma,0,1 EMX1 NM_004097 exon3 c.G732A p.R244R CCGGAGGACAAAG . 56.0 17.0 161.0 0.0 . 12 . . Atlas-SNP NAT8 9027 hgsc.bcm.edu hg19 2 73868277 73868277 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 NAT8,NS,carcinoma,0,1 NAT8 NM_003960 exon2 c.C479A p.T160N AGGACAGTCCTGA . 107.0 44.0 296.0 1.0 . 26 . . Atlas-SNP CCDC138 165055 hgsc.bcm.edu hg19 2 109405347 109405347 + Nonsense_Mutation SNP C C A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . CCDC138 NM_144978 exon3 c.C191A p.S64X GTTCATCGTTAAA . 54.0 14.0 140.0 0.0 . 49 . . Atlas-SNP DPP10 57628 hgsc.bcm.edu hg19 2 116497381 116497381 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . DPP10 NM_001178034 exon9 c.T776C p.M259T TCCTGATGATAAA . 197.0 52.0 414.0 0.0 . 415 . . Atlas-SNP PIKFYVE 200576 hgsc.bcm.edu hg19 2 209190271 209190271 + Silent SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PIKFYVE NM_015040 exon20 c.C2736T p.P912P CATCCCCTGGGAT . 67.0 17.0 163.0 0.0 . 223 . . Atlas-SNP USP40 55230 hgsc.bcm.edu hg19 2 234438104 234438104 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . USP40 NM_018218 exon11 c.C1559A p.A520E TTAGCTGCATCCA . 24.0 8.0 61.0 0.0 . 174 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41268760 41268760 + Missense_Mutation SNP A A T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . CTNNB1 NM_001098209 exon7 c.A998T p.Y333F ATACTTACGAAAA . 39.0 14.0 107.0 0.0 . 4904 . . Atlas-SNP ZPLD1 131368 hgsc.bcm.edu hg19 3 102175049 102175049 + Missense_Mutation SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ZPLD1 NM_175056 exon4 c.C388T p.P130S ACAATTCCTGGAG . 54.0 23.0 140.0 0.0 . 82 . . Atlas-SNP EPHB1 2047 hgsc.bcm.edu hg19 3 134920510 134920510 + Missense_Mutation SNP T T G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . EPHB1 NM_004441 exon12 c.T2325G p.D775E CTCAGATCCCACC . 175.0 60.0 393.0 1.0 . 519 . . Atlas-SNP PAQR9 344838 hgsc.bcm.edu hg19 3 142682019 142682019 + Missense_Mutation SNP A A C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PAQR9 NM_198504 exon1 c.T160G p.F54V CCACGAAGTCGTC . 67.0 19.0 105.0 0.0 . 57 . . Atlas-SNP KLHL6 89857 hgsc.bcm.edu hg19 3 183209884 183209884 + Missense_Mutation SNP C C A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . KLHL6 NM_130446 exon7 c.G1697T p.R566L TCGTCCCGCCCGC . 92.0 5.0 122.0 0.0 . 100 . . Atlas-SNP ECE2 9718 hgsc.bcm.edu hg19 3 183995039 183995039 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ECE2 NM_014693 exon4 c.A617G p.D206G CCACAGACCCATC . 70.0 20.0 269.0 0.0 . 303 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30726026 30726026 + Missense_Mutation SNP G G T rs370196952 TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PCDH7 NM_032457 exon1 c.G2982T p.R994S GGCAAGGCATTAC . 100.0 36.0 222.0 0.0 . 215 . . Atlas-SNP PDS5A 23244 hgsc.bcm.edu hg19 4 39902096 39902096 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PDS5A NM_001100399 exon14 c.A1531G p.M511V GAAGCATGTTCTG . 34.0 16.0 93.0 0.0 . 114 . . Atlas-SNP ANKRD17 26057 hgsc.bcm.edu hg19 4 74008384 74008384 + Missense_Mutation SNP A A C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ANKRD17 NM_198889 exon12 c.T2058G p.H686Q TGCCCCATGAGCC . 57.0 20.0 93.0 0.0 . 214 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87655497 87655497 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PTPN13 NM_006264 exon13 c.A1900G p.K634E TTAACCAAAGTGG . 38.0 10.0 105.0 0.0 . 203 . . Atlas-SNP GPRIN3 285513 hgsc.bcm.edu hg19 4 90171127 90171127 + Silent SNP A A G rs372513468 TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . GPRIN3 NM_198281 exon2 c.T135C p.N45N AAAGCCATTGGCA . 62.0 23.0 141.0 0.0 . 90 . . Atlas-SNP HHIP 64399 hgsc.bcm.edu hg19 4 145568034 145568034 + Silent SNP C C T rs200359445 TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . HHIP NM_022475 exon1 c.C207T p.C69C GCTGTGCGGTGGC . 72.0 4.0 195.0 0.0 . 100 . . Atlas-SNP IQGAP2 10788 hgsc.bcm.edu hg19 5 75888748 75888748 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . IQGAP2 NM_006633 exon9 c.A905G p.N302S AAGTCAACAGTAA . 165.0 49.0 336.0 0.0 . 186 . . Atlas-SNP SRA1 10011 hgsc.bcm.edu hg19 5 139930368 139930368 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SRA1 NM_001035235 exon5 c.T628C p.S210P CCTCTGAAAACAG . 95.0 4.0 225.0 0.0 . 24 . . Atlas-SNP GPRIN1 114787 hgsc.bcm.edu hg19 5 176024063 176024063 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . GPRIN1 NM_052899 exon2 c.T2773C p.Y925H CGCCGTATACCTC . 18.0 8.0 21.0 0.0 . 77 . . Atlas-SNP NSD1 64324 hgsc.bcm.edu hg19 5 176562395 176562395 + Missense_Mutation SNP T T G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . NSD1 NM_022455 exon2 c.T291G p.F97L ATCCTTTCAAGAC . 51.0 16.0 142.0 0.0 . 416 . . Atlas-SNP DDAH2 23564 hgsc.bcm.edu hg19 6 31695402 31695402 + Missense_Mutation SNP C C G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . DDAH2 NM_013974 exon6 c.G659C p.C220S AAGAGACAGTCAG . 88.0 21.0 253.0 0.0 . 15 . . Atlas-SNP ZNF451 26036 hgsc.bcm.edu hg19 6 57011983 57011983 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ZNF451 NM_001031623 exon10 c.G1100T p.C367F CAGATTGCAATCA . 84.0 19.0 172.0 0.0 . 181 . . Atlas-SNP PGM3 5238 hgsc.bcm.edu hg19 6 83881724 83881724 + Missense_Mutation SNP T T G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PGM3 NM_001199917 exon12 c.A1381C p.K461Q AGCCCTTCAGAGC . 37.0 9.0 137.0 0.0 . 39 . . Atlas-SNP PRDM1 639 hgsc.bcm.edu hg19 6 106554333 106554333 + Missense_Mutation SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PRDM1 NM_001198 exon6 c.C1861T p.H621Y CAGAAACACTACC . 85.0 36.0 220.0 0.0 . 195 . . Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136599396 136599396 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . BCLAF1 NM_014739 exon4 c.C623A p.T208K CCGGATGTGGCTG . 72.0 10.0 165.0 0.0 . 203 . . Atlas-SNP ACAT2 39 hgsc.bcm.edu hg19 6 160189612 160189612 + Missense_Mutation SNP T T A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ACAT2 NM_005891 exon4 c.T442A p.C148S ATACTCTGTGATG . 69.0 22.0 206.0 0.0 . 32 . . Atlas-SNP GARS 2617 hgsc.bcm.edu hg19 7 30673470 30673470 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . GARS NM_002047 exon17 c.G2214T p.E738D AATCGAGGAATGA . 35.0 17.0 90.0 0.0 . 52 . . Atlas-SNP CCDC129 223075 hgsc.bcm.edu hg19 7 31682701 31682701 + Missense_Mutation SNP G G A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . CCDC129 NM_001257968 exon11 c.G1795A p.V599I ACCCACGTCACAG . 82.0 30.0 184.0 0.0 . 127 . . Atlas-SNP ELMO1 9844 hgsc.bcm.edu hg19 7 36895340 36895340 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ELMO1 NM_014800 exon22 c.A2000G p.D667G AGTCCATCCGTCC . 135.0 38.0 312.0 0.0 . 141 . . Atlas-SNP SUMF2 25870 hgsc.bcm.edu hg19 7 56140741 56140741 + Missense_Mutation SNP G G C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SUMF2 NM_015411 exon3 c.G333C p.W111C TGGATGGAGCTTT . 84.0 20.0 178.0 0.0 . 56 . . Atlas-SNP AKAP9 10142 hgsc.bcm.edu hg19 7 91694746 91694746 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 AKAP9_ENST00000356239,NS,other,0,2 AKAP9 NM_005751 exon25 c.A6179G p.K2060R TGGAAAAGCAGTT . 50.0 23.0 100.0 1.0 . 788 . . Atlas-SNP GCC1 79571 hgsc.bcm.edu hg19 7 127222282 127222282 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . GCC1 NM_024523 exon2 c.A2114G p.H705R TCGATGTGGCTCT . 225.0 62.0 620.0 1.0 . 83 . . Atlas-SNP SLC13A4 26266 hgsc.bcm.edu hg19 7 135412217 135412217 + Missense_Mutation SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SLC13A4 NM_012450 exon1 c.G28A p.V10I TCCGGACTCGGAG . 26.0 11.0 8.0 0.0 . 56 . . Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141763307 141763307 + Silent SNP T T C rs369807337 TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . MGAM NM_004668 exon36 c.T4266C p.N1422N TATGAATGAACCA . 70.0 21.0 157.0 0.0 . 767 . . Atlas-SNP ATAD2 29028 hgsc.bcm.edu hg19 8 124408568 124408568 + Silent SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ATAD2 NM_014109 exon1 c.G30A p.L10L GTTGTGCAGCTCC . 88.0 5.0 72.0 0.0 . 160 . . Atlas-SNP NDRG1 10397 hgsc.bcm.edu hg19 8 134270653 134270653 + Missense_Mutation SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . NDRG1 NM_006096 exon7 c.G406A p.G136S CCATGCCAATAAT . 212.0 65.0 270.0 0.0 . 40 . . Atlas-SNP PTK2 5747 hgsc.bcm.edu hg19 8 141874456 141874456 + Missense_Mutation SNP G G C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PTK2 NM_005607 exon5 c.C471G p.N157K AAACTGGTTTAGA . 90.0 32.0 169.0 0.0 . 311 . . Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8504350 8504350 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PTPRD NM_130392 exon12 c.A1733G p.N578S AAGCTGTTTGGTT . 135.0 41.0 348.0 0.0 . 1348 . . Atlas-SNP SLC24A2 25769 hgsc.bcm.edu hg19 9 19516230 19516230 + Missense_Mutation SNP A A T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SLC24A2 NM_020344 exon10 c.T1907A p.M636K CCAAACATGATGA . 131.0 34.0 267.0 0.0 . 93 . . Atlas-SNP DAB2IP 153090 hgsc.bcm.edu hg19 9 124535286 124535286 + Missense_Mutation SNP T T G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . DAB2IP NM_032552 exon12 c.T2395G p.S799A CCGCTCTCCTTCC . 32.0 11.0 41.0 0.0 . 150 . . Atlas-SNP ITGA8 8516 hgsc.bcm.edu hg19 10 15559199 15559199 + Silent SNP G G T rs199977895 TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ITGA8 NM_003638 exon30 c.C3150A p.T1050T CCTGTCGGTCATG . 42.0 18.0 65.0 0.0 . 230 . G|0.999;T|0.001 Atlas-SNP ZNF488 118738 hgsc.bcm.edu hg19 10 48370889 48370889 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ZNF488 NM_153034 exon2 c.G357T p.E119D CCAGGAGAGGGAG . 75.0 34.0 232.0 0.0 . 38 . . Atlas-SNP SUPV3L1 6832 hgsc.bcm.edu hg19 10 70955011 70955011 + Missense_Mutation SNP A A T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SUPV3L1 NM_003171 exon7 c.A921T p.R307S GACCAGAGCACTT . 39.0 20.0 150.0 0.0 . 61 . . Atlas-SNP DLG5 9231 hgsc.bcm.edu hg19 10 79577541 79577541 + Missense_Mutation SNP G G C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . DLG5 NM_004747 exon18 c.C3778G p.R1260G CCAGGCGGGCGCT . 52.0 29.0 161.0 0.0 . 154 . . Atlas-SNP BLNK 29760 hgsc.bcm.edu hg19 10 97956734 97956734 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . BLNK NM_013314 exon16 c.A1181G p.Y394C ATATTATATACTC . 14.0 7.0 68.0 0.0 . 46 . . Atlas-SNP PHRF1 57661 hgsc.bcm.edu hg19 11 587380 587380 + Silent SNP C C A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PHRF1 NM_020901 exon4 c.C336A p.L112L CTGTCTCAACGCA . 49.0 24.0 222.0 0.0 . 188 . . Atlas-SNP KCNA5 3741 hgsc.bcm.edu hg19 12 5153808 5153808 + Silent SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . KCNA5 NM_002234 exon1 c.C495T p.F165F CTTCTTCGACCGC . 60.0 30.0 109.0 0.0 . 138 . . Atlas-SNP SCNN1A 6337 hgsc.bcm.edu hg19 12 6483876 6483876 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SCNN1A NM_001159576 exon1 c.A251G p.K84R TCACGCTTGTTCC . 35.0 16.0 67.0 0.0 . 54 . . Atlas-SNP CD163 9332 hgsc.bcm.edu hg19 12 7640068 7640068 + Missense_Mutation SNP C C A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . CD163 NM_203416 exon8 c.G1937T p.W646L TGCCTCCAGATCT . 149.0 58.0 334.0 1.0 . 221 . . Atlas-SNP NAA16 79612 hgsc.bcm.edu hg19 13 41905450 41905450 + Silent SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . NAA16 NM_001110798 exon8 c.T852C p.S284S AATTAGTAAGCAG . 64.0 20.0 115.0 0.0 . 74 . . Atlas-SNP SLITRK5 26050 hgsc.bcm.edu hg19 13 88330185 88330185 + Missense_Mutation SNP G G A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SLITRK5 NM_015567 exon2 c.G2542A p.V848M TCGCCGGTGCAGG . 46.0 18.0 84.0 0.0 . 192 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103392315 103392315 + Missense_Mutation SNP A A T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . . NM_001146197 exon4 c.T10732A p.W3578R TCTTCCATTTCGA . 112.0 43.0 198.0 0.0 . . . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23902342 23902342 + Missense_Mutation SNP G G A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . MYH7 NM_000257 exon4 c.C296T p.P99L ACCGCGGGCTCAT . 182.0 66.0 413.0 0.0 . 349 . . Atlas-SNP SLC8A3 6547 hgsc.bcm.edu hg19 14 70634240 70634240 + Silent SNP G G A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 SLC8A3_ENST00000357887,right_upper_lobe,carcinoma,0,2 SLC8A3 NM_183002 exon2 c.C900T p.N300N CACCAGGTTCCCA . 23.0 7.0 95.0 0.0 . 234 . . Atlas-SNP TC2N 123036 hgsc.bcm.edu hg19 14 92265340 92265340 + Missense_Mutation SNP T T G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . TC2N NM_001128596 exon6 c.A630C p.R210S CAGGCTTCTGTTA . 13.0 7.0 24.0 0.0 . 49 . . Atlas-SNP TUBGCP5 114791 hgsc.bcm.edu hg19 15 22848249 22848249 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . TUBGCP5 NM_052903 exon9 c.G839T p.G280V TTTCAGGAGTGAA . 40.0 11.0 129.0 0.0 . 82 . . Atlas-SNP MYEF2 50804 hgsc.bcm.edu hg19 15 48458174 48458174 + Missense_Mutation SNP T T G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . MYEF2 NM_016132 exon5 c.A481C p.M161L TGTTCATAGTTTC . 51.0 17.0 87.0 0.0 . 67 . . Atlas-SNP UBL7 84993 hgsc.bcm.edu hg19 15 74742014 74742014 + Missense_Mutation SNP C C A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . UBL7 NM_201265 exon8 c.G667T p.G223C GGAAGCCACCTGG . 79.0 4.0 191.0 0.0 . 24 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578513 7578513 + Missense_Mutation SNP C C A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 TP53_ENST00000545858,bladder,carcinoma,0,5 TP53 NM_000546 exon5 c.G417T p.K139N GCAGGTCTTGGCC . 48.0 24.0 111.0 0.0 . 33396 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11573031 11573031 + Silent SNP C C G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . DNAH9 NM_001372 exon17 c.C3273G p.P1091P TCGACCCTTTAAG . 32.0 20.0 139.0 0.0 . 695 . . Atlas-SNP RPL23A 6147 hgsc.bcm.edu hg19 17 27049757 27049757 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . RPL23A NM_000984 exon3 c.A226G p.I76V TATGCTATCATCA . 199.0 84.0 351.0 0.0 . 13 . . Atlas-SNP UNC45B 146862 hgsc.bcm.edu hg19 17 33486394 33486394 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . UNC45B NM_001267052 exon8 c.A809G p.D270G CTTCAGACACCAA . 96.0 22.0 143.0 0.0 . 133 . . Atlas-SNP KRT23 25984 hgsc.bcm.edu hg19 17 39084785 39084785 + Silent SNP C C G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . KRT23 NM_015515 exon5 c.G711C p.L237L CTTAATCAGATCT . 74.0 18.0 168.0 0.0 . 59 . . Atlas-SNP KRT39 390792 hgsc.bcm.edu hg19 17 39118509 39118509 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . KRT39 NM_213656 exon5 c.A901G p.S301G GAGAGCTGGTCAC . 76.0 32.0 132.0 0.0 . 53 . . Atlas-SNP HOXB5 3215 hgsc.bcm.edu hg19 17 46669637 46669637 + Missense_Mutation SNP C C G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . HOXB5 NM_002147 exon2 c.G744C p.K248N CTTCCACTTCATG . 104.0 48.0 164.0 0.0 . 20 . . Atlas-SNP APPBP2 10513 hgsc.bcm.edu hg19 17 58571884 58571884 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . APPBP2 NM_006380 exon3 c.A322G p.I108V CTGCTATATAAGA . 77.0 44.0 100.0 0.0 . 48 . . Atlas-SNP TEX2 55852 hgsc.bcm.edu hg19 17 62230425 62230425 + Missense_Mutation SNP T T A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . TEX2 NM_018469 exon10 c.A3041T p.E1014V ATAAACTCTGTCT . 66.0 28.0 115.0 0.0 . 89 . . Atlas-SNP SOX9 6662 hgsc.bcm.edu hg19 17 70119055 70119055 + Silent SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SOX9 NM_000346 exon2 c.C627T p.A209A GCAGGCCGACTCG . 87.0 49.0 116.0 0.0 . 91 . . Atlas-SNP RPTOR 57521 hgsc.bcm.edu hg19 17 78857615 78857615 + Missense_Mutation SNP G G A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 RPTOR,rectum,carcinoma,0,1 RPTOR NM_020761 exon16 c.G1685A p.C562Y CCATCTGCCTGGA . 60.0 17.0 96.0 0.0 . 122 . . Atlas-SNP ATP5A1 498 hgsc.bcm.edu hg19 18 43667458 43667458 + Missense_Mutation SNP T T A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ATP5A1 NM_004046 exon7 c.A800T p.D267V ATGGCATCTGAGA . 90.0 21.0 256.0 0.0 . 52 . . Atlas-SNP DCC 1630 hgsc.bcm.edu hg19 18 50450198 50450198 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . DCC NM_005215 exon4 c.G819T p.W273C TACCTGGTTACGA . 137.0 36.0 264.0 0.0 . 360 . . Atlas-SNP KIAA1683 80726 hgsc.bcm.edu hg19 19 18368011 18368011 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . KIAA1683 NM_001145304 exon4 c.C4083A p.H1361Q ATGCATGTGCCGT . 39.0 13.0 115.0 0.0 . 190 . . Atlas-SNP SLC7A9 11136 hgsc.bcm.edu hg19 19 33324221 33324221 + Silent SNP T T A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SLC7A9 NM_001243036 exon12 c.A1233T p.V411V AATGACTACGGGC . 152.0 45.0 430.0 1.0 . 78 . . Atlas-SNP ZNF790 388536 hgsc.bcm.edu hg19 19 37310028 37310028 + Silent SNP G G A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ZNF790 NM_206894 exon5 c.C1218T p.S406S GTGTGAGCTCCAA . 42.0 12.0 97.0 0.0 . 89 . . Atlas-SNP ZNF790 388536 hgsc.bcm.edu hg19 19 37310029 37310029 + Missense_Mutation SNP C C T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ZNF790 NM_206894 exon5 c.G1217A p.S406N TGTGAGCTCCAAA . 42.0 12.0 98.0 0.0 . 89 . . Atlas-SNP ZNF420 147923 hgsc.bcm.edu hg19 19 37582003 37582003 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ZNF420 NM_144689 exon4 c.A116G p.Y39C AGAACTATAGCAA . 90.0 21.0 151.0 0.0 . 71 . . Atlas-SNP RBM39 9584 hgsc.bcm.edu hg19 20 34319990 34319990 + Nonsense_Mutation SNP G G A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . RBM39 NM_184234 exon4 c.C169T p.R57X TACTTCGCTTCCG . 57.0 18.0 143.0 0.0 . 68 . . Atlas-SNP TTI1 9675 hgsc.bcm.edu hg19 20 36634716 36634716 + Missense_Mutation SNP G G A novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . TTI1 NM_014657 exon4 c.C2386T p.P796S CTGCTGGTCTTTG . 100.0 32.0 203.0 0.0 . 104 . . Atlas-SNP SHANK3 85358 hgsc.bcm.edu hg19 22 51169547 51169547 + Missense_Mutation SNP G G T novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . SHANK3 NM_033517 exon22 c.G4961T p.W1654L AGCTCTGGAGCAA . 18.0 5.0 83.0 0.0 . 96 . . Atlas-SNP ZNF711 7552 hgsc.bcm.edu hg19 X 84526390 84526390 + Silent SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ZNF711 NM_021998 exon9 c.T1842C p.T614T CCATACTAAGGAT . 85.0 49.0 200.0 1.0 . 198 . . Atlas-SNP TCEAL8 90843 hgsc.bcm.edu hg19 X 102508744 102508744 + Missense_Mutation SNP T T C novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . TCEAL8 NM_001006684 exon2 c.A164G p.N55S GGCTGATTCGGCC . 75.0 4.0 184.0 0.0 . 15 . . Atlas-SNP PHF6 84295 hgsc.bcm.edu hg19 X 133527959 133527959 + Missense_Mutation SNP A A G novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . PHF6 NM_032335 exon5 c.A395G p.K132R AACACAAGAAAAC . 51.0 27.0 126.0 0.0 . 176 . . Atlas-SNP CR1L 1379 hgsc.bcm.edu hg19 1 207872610 207872619 + Frame_Shift_Del DEL GTGTGTGAAC GTGTGTGAAC - novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 GTGTGTGAAC GTGTGTGAAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . CR1L NM_175710 exon8 c.1218_1227del p.406_409del . . 108.0 12.0 394.0 0.0 . 97 . . Atlas-INDEL HS2ST1 9653 hgsc.bcm.edu hg19 1 87563541 87563541 + Frame_Shift_Del DEL A A - novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . HS2ST1 NM_012262 exon5 c.608delC p.A203fs . . 114.0 17.0 247.0 0.0 . 43 . . Atlas-INDEL VPS39 23339 hgsc.bcm.edu hg19 15 42476724 42476724 + Frame_Shift_Del DEL C C - novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . VPS39 NM_015289 exon8 c.710delT p.V237fs . . 114.0 41.0 263.0 0.0 . 53 . . Atlas-Indel,Pindel KLHDC4 54758 hgsc.bcm.edu hg19 16 87741993 87741994 + Frame_Shift_Del DEL GT GT - novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . KLHDC4 NM_017566 exon11 c.1527_1528del p.509_510del . . 44.0 10.0 98.0 0.0 . 45 . . Atlas-INDEL ANKRD17 26057 hgsc.bcm.edu hg19 4 74008379 74008379 + Frame_Shift_Del DEL G G - novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . ANKRD17 NM_198889 exon12 c.2064delA p.A688fs . . 53.0 19.0 81.0 0.0 . 214 . . Atlas-Indel,Pindel FLT1 2321 hgsc.bcm.edu hg19 13 28963881 28963881 + Frame_Shift_Del DEL C C - novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . FLT1 NM_001159920 exon13 c.2022delC p.S674fs . . 33.0 15.0 50.0 0.0 . 393 . . Atlas-Indel,Pindel ARHGEF10L 55160 hgsc.bcm.edu hg19 1 17948399 17948422 + In_Frame_Del DEL AAGGCAGCTACGTGGAGTCTCTGA AAGGCAGCTACGTGGAGTCTCTGA - novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 AAGGCAGCTACGTGGAGTCTCTGA AAGGCAGCTACGTGGAGTCTCTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 ARHGEF10L_ENST00000361221,rectum,carcinoma,0,2 ARHGEF10L NM_018125 exon11 c.982_1005del p.328_335del . . 63.0 11.0 197.0 0.0 . 219 . . Atlas-Indel,Pindel HS2ST1 9653 hgsc.bcm.edu hg19 1 87563541 87563544 + Frame_Shift_Del DEL AGAA AGAA - novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 AGAA AGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . HS2ST1 NM_012262 exon5 c.608_611del p.203_204del . . 119.0 15.0 256.0 0.0 . 43 . . Pindel CCT6B 10693 hgsc.bcm.edu hg19 17 33281570 33281599 + In_Frame_Del DEL TTATCTTTGCAGCTTCAAATCCTTCAGCTA TTATCTTTGCAGCTTCAAATCCTTCAGCTA - novel TCGA-G3-A5SJ-01A-11D-A27I-10 TCGA-G3-A5SJ-10A-01D-A27I-10 TTATCTTTGCAGCTTCAAATCCTTCAGCTA TTATCTTTGCAGCTTCAAATCCTTCAGCTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 92f0cb64-0a29-4ca2-92d0-94d1f0cf050b b8cc644d-6325-45dc-bc23-58f5e69f8242 . CCT6B NM_006584 exon4 c.357_386del p.119_129del . . 36.0 10.0 95.0 0.0 . 63 . . Pindel