Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TAS1R3	83756	hgsc.bcm.edu	hg19	1	1267320	1267320	+	Splice_Site	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TAS1R3	NM_152228	exon2	c.492+2T>G	.	CCCAGGTGGGCGC	.	206.0	9.0	325.0	0.0	.	39	.	.	Atlas-SNP
PANK4	55229	hgsc.bcm.edu	hg19	1	2441359	2441359	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	PANK4,NS,lymphoid_neoplasm,+1,1	PANK4	NM_018216	exon18	c.C2050G	p.Q684E	CTTCCTGGAGCGC	.	189.0	0.0	231.0	0.0	.	64	.	.	Atlas-SNP
ICMT	23463	hgsc.bcm.edu	hg19	1	6293699	6293699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ICMT	NM_012405	exon3	c.A289G	p.M97V	AGCACATGTACCT	.	95.0	4.0	120.0	0.0	.	13	.	.	Atlas-SNP
PLEKHG5	57449	hgsc.bcm.edu	hg19	1	6536010	6536010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	PLEKHG5	NM_001265592	exon4	c.A367G	p.S123G	CAGAGCTCTCCTC	.	93.0	4.0	167.0	0.0	.	66	.	.	Atlas-SNP
CLSTN1	22883	hgsc.bcm.edu	hg19	1	9790636	9790636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLSTN1	NM_001009566	exon19	c.A2876G	p.E959G	CCCTGCTCCCCCT	.	93.0	4.0	83.0	0.0	.	88	.	.	Atlas-SNP
ZBTB17	7709	hgsc.bcm.edu	hg19	1	16270914	16270914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZBTB17	NM_003443	exon9	c.T1252C	p.Y418H	ACTGGTAGGGCTT	.	146.0	6.0	183.0	0.0	.	45	.	.	Atlas-SNP
ATP13A2	23400	hgsc.bcm.edu	hg19	1	17314703	17314703	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ATP13A2,NS,carcinoma,0,1	ATP13A2	NM_022089	exon25	c.C2789A	p.S930X	CTGAACGAAGTGT	.	198.0	0.0	260.0	0.0	.	85	.	.	Atlas-SNP
PLA2G2D	26279	hgsc.bcm.edu	hg19	1	20442055	20442055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	PLA2G2D,NS,carcinoma,0,1	PLA2G2D	NM_012400	exon3	c.C237G	p.C79W	GATGCTGCACCCC	.	225.0	0.0	234.0	0.0	.	7	.	.	Atlas-SNP
ECE1	1889	hgsc.bcm.edu	hg19	1	21564732	21564732	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ECE1	NM_001397	exon11	c.T1284C	p.C428C	AGGAAGACAGGTC	.	67.0	4.0	107.0	0.0	.	76	.	.	Atlas-SNP
PPT1	5538	hgsc.bcm.edu	hg19	1	40555118	40555118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPT1	NM_000310	exon5	c.T500C	p.L167P	GCATTCAGTGTTT	.	146.0	6.0	171.0	0.0	.	18	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43893038	43893038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SZT2	NM_015284	exon24	c.A3349G	p.S1117G	GCTCCCAGTCTGA	.	98.0	4.0	125.0	0.0	.	383	.	.	Atlas-SNP
KIF2C	11004	hgsc.bcm.edu	hg19	1	45226265	45226265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF2C	NM_006845	exon16	c.A1574G	p.E525G	CACAGGAGTGCAT	.	80.0	4.0	87.0	0.0	.	68	.	.	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	hg19	1	46290243	46290243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAST2	NM_015112	exon2	c.T316C	p.S106P	GCCAGCTCTCTAT	.	95.0	4.0	165.0	0.0	.	136	.	.	Atlas-SNP
PDE4B	5142	hgsc.bcm.edu	hg19	1	66458806	66458806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDE4B	NM_001037340	exon1	c.T217C	p.F73L	CGTCGCTTCACTG	.	89.0	4.0	142.0	0.0	.	231	.	.	Atlas-SNP
PDE4B	5142	hgsc.bcm.edu	hg19	1	66831430	66831430	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDE4B	NM_001037341	exon13	c.T1365C	p.N455N	CTCCAATCAGTTT	.	96.0	5.0	106.0	0.0	.	231	.	.	Atlas-SNP
TCTEX1D1	200132	hgsc.bcm.edu	hg19	1	67236141	67236141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCTEX1D1	NM_152665	exon3	c.T191C	p.M64T	TTCAGATGGAAAA	.	97.0	4.0	111.0	0.0	.	27	.	.	Atlas-SNP
SYDE2	84144	hgsc.bcm.edu	hg19	1	85648623	85648623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYDE2	NM_032184	exon3	c.G1702A	p.E568K	GAACTTCTCGGCA	.	122.0	5.0	183.0	0.0	.	135	.	.	Atlas-SNP
PALMD	54873	hgsc.bcm.edu	hg19	1	100154982	100154982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	PALMD,colon,carcinoma,0,1	PALMD	NM_017734	exon7	c.A1166G	p.Q389R	CTTGTCAGGAGGA	.	120.0	5.0	181.0	0.0	.	64	.	.	Atlas-SNP
AKNAD1	254268	hgsc.bcm.edu	hg19	1	109369920	109369920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKNAD1	NM_152763	exon11	c.C1843A	p.Q615K	CGTTTTGCTTCCT	.	61.0	4.0	70.0	0.0	.	83	.	.	Atlas-SNP
DDX20	11218	hgsc.bcm.edu	hg19	1	112305374	112305374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDX20	NM_007204	exon9	c.A1180G	p.M394V	ACATACATGCATC	.	79.0	4.0	103.0	0.0	.	50	.	.	Atlas-SNP
NBPF7	343505	hgsc.bcm.edu	hg19	1	120378829	120378829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NBPF7	NM_001047980	exon7	c.A917G	p.K306R	TGCAGCTTCCTGA	.	81.0	4.0	106.0	0.0	.	46	.	.	Atlas-SNP
HIST2H2AC	8338	hgsc.bcm.edu	hg19	1	149858905	149858905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST2H2AC	NM_003517	exon1	c.A381G	p.K127K	AGCCAAAAGCAAA	.	394.0	78.0	281.0	0.0	.	75	.	.	Atlas-SNP
OTUD7B	56957	hgsc.bcm.edu	hg19	1	149936173	149936173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OTUD7B	NM_020205	exon6	c.T706C	p.W236R	GCTGCCACCTCCA	.	94.0	4.0	70.0	0.0	.	76	.	.	Atlas-SNP
MEF2D	4209	hgsc.bcm.edu	hg19	1	156446904	156446904	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	MEF2D,colon,adenoma,0,1	MEF2D	NM_005920	exon7	c.C755G	p.P252R	GGGGGTGGAGACT	.	351.0	0.0	185.0	0.0	.	43	.	.	Atlas-SNP
METTL18	92342	hgsc.bcm.edu	hg19	1	169762228	169762228	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	METTL18	NM_033418	exon2	c.A609C	p.I203I	TGCAGTTATACCT	.	291.0	54.0	208.0	0.0	.	23	.	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	hg19	1	182442764	182442764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RGSL1	NM_001137669	exon6	c.A518G	p.E173G	GGAGGGAGATCCT	.	177.0	8.0	146.0	0.0	.	111	.	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	hg19	1	197056087	197056087	+	Missense_Mutation	SNP	A	A	G	rs200083138	by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ASPM,caecum,carcinoma,0,1	ASPM	NM_018136	exon27	c.T10177C	p.S3393P	CTTTGGACCTACT	.	100.0	4.0	82.0	0.0	.	444	.	A|1.000;C|0.000	Atlas-SNP
DSTYK	25778	hgsc.bcm.edu	hg19	1	205180473	205180473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSTYK	NM_199462	exon1	c.T191C	p.L64P	GAGGAGAGACAAG	.	54.0	4.0	67.0	0.0	.	87	.	.	Atlas-SNP
FLVCR1	28982	hgsc.bcm.edu	hg19	1	213068596	213068596	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	FLVCR1,rectum,carcinoma,+1,1	FLVCR1	NM_014053	exon10	c.G1632T	p.T544T	AAAAACGGTTATG	.	246.0	0.0	216.0	0.0	.	31	.	.	Atlas-SNP
KCNK2	3776	hgsc.bcm.edu	hg19	1	215297991	215297991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK2	NM_001017425	exon3	c.A373G	p.I125V	GCAGCAATAAATG	.	389.0	106.0	310.0	0.0	.	135	.	.	Atlas-SNP
MARC1	64757	hgsc.bcm.edu	hg19	1	220960447	220960447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_022746	exon1	c.A161G	p.Q54R	TGCAGCAGGTGGG	.	50.0	5.0	52.0	0.0	.	.	.	.	Atlas-SNP
PARP1	142	hgsc.bcm.edu	hg19	1	226570841	226570841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	PARP1,NS,carcinoma,0,1	PARP1	NM_001618	exon8	c.A1055G	p.K352R	TCCTGTTTTTTAA	.	191.0	0.0	129.0	0.0	.	100	.	.	Atlas-SNP
PSEN2	5664	hgsc.bcm.edu	hg19	1	227073343	227073343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSEN2	NM_012486	exon6	c.T461C	p.I154T	TGACCATCTTCTT	.	142.0	6.0	93.0	0.0	.	55	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228434468	228434468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,2	OBSCN	NM_001271223	exon14	c.G4273C	p.G1425R	GAGGCTGGGGGCC	.	371.0	0.0	339.0	1.0	.	2142	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228560756	228560756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OBSCN	NM_001271223	exon105	c.C25148G	p.S8383C	ACATCTCCCGGAT	.	183.0	40.0	125.0	0.0	.	2142	.	.	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	hg19	1	233334767	233334767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCNXL2	NM_014801	exon15	c.G2984T	p.G995V	GTTATCCCAGACA	.	468.0	304.0	399.0	0.0	.	204	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245849535	245849535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF26B	NM_018012	exon12	c.T3250C	p.S1084P	CCCAGCTCTCCTT	.	326.0	16.0	245.0	0.0	.	343	.	.	Atlas-SNP
OR2C3	81472	hgsc.bcm.edu	hg19	1	247695757	247695757	+	Silent	SNP	G	G	C	rs61746303	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	OR2C3,NS,carcinoma,0,2	OR2C3	NM_198074	exon2	c.C57G	p.S19S	TCGTGTGGAGAAG	.	280.0	0.0	235.0	0.0	.	92	.	G|0.996;A|0.004	Atlas-SNP
OR2T4	127074	hgsc.bcm.edu	hg19	1	248525054	248525054	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	OR2T4,NS,carcinoma,0,1	OR2T4	NM_001004696	exon1	c.C172T	p.L58L	CCAGCACTACTTT	.	535.0	0.0	437.0	0.0	.	126	.	.	Atlas-SNP
TAF1B	9014	hgsc.bcm.edu	hg19	2	10045015	10045015	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	TAF1B,NS,carcinoma,0,1	TAF1B	NM_005680	exon9	c.A835T	p.K279X	ATCTACAAAAAAA	.	83.0	0.0	85.0	0.0	.	62	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21235238	21235238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOB	NM_000384	exon26	c.A4502G	p.Y1501C	AGGCCATATGTGC	.	190.0	77.0	260.0	0.0	.	761	.	.	Atlas-SNP
PFN4	375189	hgsc.bcm.edu	hg19	2	24345390	24345390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PFN4	NM_199346	exon2	c.A16G	p.S6G	ATAAGCTCTGCAA	.	164.0	8.0	234.0	0.0	.	16	.	.	Atlas-SNP
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25467083	25467083	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	DNMT3A,NS,haematopoietic_neoplasm,0,4	DNMT3A	NM_175629	exon15	c.C1792A	p.R598R	CCTCTCGCCGCCG	.	189.0	0.0	217.0	1.0	.	1807	.	.	Atlas-SNP
ASXL2	55252	hgsc.bcm.edu	hg19	2	26029194	26029194	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ASXL2	NM_018263	exon3	c.T156C	p.P52P	TGCAAGAGGAGAA	.	107.0	6.0	159.0	0.0	.	217	.	.	Atlas-SNP
ZNF513	130557	hgsc.bcm.edu	hg19	2	27603076	27603076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF513	NM_144631	exon2	c.T95C	p.L32P	AATACCAGGGCCC	.	101.0	5.0	121.0	0.0	.	45	.	.	Atlas-SNP
C2orf16	84226	hgsc.bcm.edu	hg19	2	27800546	27800546	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C2orf16	NM_032266	exon1	c.A1107G	p.G369G	GTCAGGAGTGCAG	.	75.0	4.0	82.0	0.0	.	357	.	.	Atlas-SNP
CAPN13	92291	hgsc.bcm.edu	hg19	2	30987138	30987138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAPN13	NM_144575	exon6	c.T559C	p.F187L	CGAGGAAGCCATA	.	96.0	5.0	168.0	0.0	.	70	.	.	Atlas-SNP
ARHGEF33	100271715	hgsc.bcm.edu	hg19	2	39181520	39181520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGEF33	NM_001145451	exon11	c.G1144A	p.E382K	GGTGATGAAGAGA	.	120.0	38.0	201.0	0.0	.	34	.	.	Atlas-SNP
ARHGEF33	100271715	hgsc.bcm.edu	hg19	2	39181521	39181521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGEF33	NM_001145451	exon11	c.A1145T	p.E382V	GTGATGAAGAGAT	.	119.0	36.0	203.0	0.0	.	34	.	.	Atlas-SNP
SLC3A1	6519	hgsc.bcm.edu	hg19	2	44513251	44513251	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC3A1	NM_000341	exon4	c.A846G	p.Q282Q	AGAGCAACCTGAT	.	99.0	4.0	128.0	0.0	.	62	.	.	Atlas-SNP
FBXO11	80204	hgsc.bcm.edu	hg19	2	48066902	48066902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO11	NM_001190274	exon2	c.A239G	p.D80G	GGCACATCATCAT	.	79.0	4.0	123.0	0.0	.	127	.	.	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	hg19	2	54197809	54197809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSME4	NM_014614	exon1	c.T113C	p.L38P	TAGGGCAGCAGCT	.	94.0	6.0	126.0	0.0	.	247	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54858486	54858486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPTBN1	NM_003128	exon16	c.T3302C	p.L1101P	AGCTGCTCACGCA	.	138.0	6.0	205.0	0.0	.	378	.	.	Atlas-SNP
CCDC88A	55704	hgsc.bcm.edu	hg19	2	55536323	55536323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC88A	NM_018084	exon24	c.T4147G	p.F1383V	CATAAAATTTGTA	.	195.0	83.0	187.0	0.0	.	336	.	.	Atlas-SNP
IMMT	10989	hgsc.bcm.edu	hg19	2	86385804	86385804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IMMT	NM_006839	exon10	c.A1073G	p.Y358C	TCATGATACTGAG	.	136.0	58.0	173.0	0.0	.	65	.	.	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	hg19	2	98828460	98828460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VWA3B	NM_144992	exon13	c.T1805C	p.I602T	AGGCAATCTACCT	.	111.0	5.0	148.0	0.0	.	138	.	.	Atlas-SNP
SLC35F5	80255	hgsc.bcm.edu	hg19	2	114512776	114512776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC35F5	NM_025181	exon3	c.A239G	p.D80G	ATCACATCAACAA	.	95.0	4.0	129.0	0.0	.	60	.	.	Atlas-SNP
MYO7B	4648	hgsc.bcm.edu	hg19	2	128345986	128345986	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYO7B	NM_001080527	exon15	c.A1710G	p.R570R	GAACCGAGACGTG	.	75.0	4.0	81.0	0.0	.	359	.	.	Atlas-SNP
PLEKHB2	55041	hgsc.bcm.edu	hg19	2	131884342	131884342	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHB2	NM_001267062	exon4	c.A276G	p.E92E	TGCAGAAAGCACA	.	93.0	36.0	102.0	0.0	.	47	.	.	Atlas-SNP
ZRANB3	84083	hgsc.bcm.edu	hg19	2	135985575	135985575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZRANB3	NM_032143	exon14	c.A1965G	p.I655M	GCTATCTATTTGC	.	104.0	37.0	92.0	0.0	.	109	.	.	Atlas-SNP
RBM43	375287	hgsc.bcm.edu	hg19	2	152107693	152107693	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBM43	NM_198557	exon4	c.T801C	p.G267G	CTGAGAACCAACT	.	96.0	4.0	152.0	0.0	.	35	.	.	Atlas-SNP
PKP4	8502	hgsc.bcm.edu	hg19	2	159499020	159499020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP4	NM_001005476	exon11	c.A1718G	p.K573R	GAATCAAGCATCT	.	123.0	42.0	130.0	0.0	.	133	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168103504	168103504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XIRP2	NM_152381	exon9	c.A5602G	p.M1868V	GGTAACATGCTAG	.	87.0	4.0	77.0	0.0	.	914	.	.	Atlas-SNP
CHN1	1123	hgsc.bcm.edu	hg19	2	175666522	175666522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHN1	NM_001822	exon12	c.A1121G	p.E374G	AATTGCTCATCCG	.	131.0	7.0	151.0	0.0	.	67	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179600364	179600364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTN	NM_001267550	exon50	c.T14809C	p.C4937R	CAAAACAGATCTT	.	121.0	6.0	116.0	0.0	.	18412	.	.	Atlas-SNP
CCDC141	285025	hgsc.bcm.edu	hg19	2	179839801	179839801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC141	NM_173648	exon4	c.A509G	p.H170R	TGTTCATGAAGCT	.	69.0	4.0	107.0	0.0	.	362	.	.	Atlas-SNP
ANKAR	150709	hgsc.bcm.edu	hg19	2	190585478	190585478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKAR	NM_144708	exon12	c.T2600C	p.L867P	AAGGCCTCCCATA	.	69.0	5.0	75.0	0.0	.	184	.	.	Atlas-SNP
STAT1	6772	hgsc.bcm.edu	hg19	2	191862950	191862950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STAT1	NM_007315	exon8	c.A626G	p.K209R	TTTCTCTTATTGT	.	69.0	4.0	128.0	0.0	.	93	.	.	Atlas-SNP
TMEM237	65062	hgsc.bcm.edu	hg19	2	202501540	202501540	+	Missense_Mutation	SNP	T	T	A	rs376226585		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM237	NM_001044385	exon4	c.A205T	p.T69S	CTTTAGTTGATGG	.	44.0	19.0	53.0	0.0	.	21	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210543360	210543360	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP2	NM_001039538	exon6	c.A327G	p.E109E	AGGTGAACAAGAG	.	80.0	4.0	127.0	0.0	.	372	.	.	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	hg19	2	219617891	219617891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTLL4	NM_014640	exon18	c.T3241C	p.S1081P	GTTGTCTCTGATT	.	195.0	8.0	268.0	0.0	.	96	.	.	Atlas-SNP
TM4SF20	79853	hgsc.bcm.edu	hg19	2	228243963	228243963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TM4SF20	NM_024795	exon1	c.A22G	p.T8A	AGGATGTCCATCC	.	115.0	5.0	157.0	0.0	.	24	.	.	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	hg19	2	234368500	234368500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DGKD	NM_152879	exon23	c.T2792C	p.V931A	GGATTGTCCACAA	.	117.0	5.0	163.0	0.0	.	106	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238273019	238273019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL6A3	NM_004369	exon13	c.G5891A	p.R1964K	GATGCTCTGTGTA	.	91.0	4.0	120.0	0.0	.	608	.	.	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	hg19	3	1414128	1414128	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTN6	NM_014461	exon13	c.A1638G	p.K546K	AAAAAAAGGAGTG	.	74.0	4.0	99.0	0.0	.	245	.	.	Atlas-SNP
SUMF1	285362	hgsc.bcm.edu	hg19	3	4403894	4403894	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUMF1	NM_182760	exon9	c.A1059G	p.T353T	ATCAGGTGTGTTC	.	96.0	4.0	131.0	0.0	.	23	.	.	Atlas-SNP
TADA3	10474	hgsc.bcm.edu	hg19	3	9827071	9827071	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TADA3	NM_133480	exon7	c.T849C	p.P283P	CATGTCAGGAATA	.	123.0	5.0	155.0	0.0	.	36	.	.	Atlas-SNP
CRELD1	78987	hgsc.bcm.edu	hg19	3	9984844	9984844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CRELD1	NM_001077415	exon9	c.T901C	p.S301P	GTGGGCTCCAAGT	.	157.0	7.0	204.0	0.0	.	48	.	.	Atlas-SNP
TMEM43	79188	hgsc.bcm.edu	hg19	3	14174380	14174380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM43	NM_024334	exon6	c.T457C	p.S153P	TGGAGGTCAGAAA	.	138.0	8.0	228.0	0.0	.	33	.	.	Atlas-SNP
SH3BP5	9467	hgsc.bcm.edu	hg19	3	15311265	15311265	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH3BP5	NM_004844	exon4	c.G450A	p.Q150Q	GTCGAACTGCCGC	.	135.0	6.0	166.0	0.0	.	32	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CTNNB1,gallbladder,other,0,161	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	299.0	112.0	491.0	0.0	.	4904	.	.	Atlas-SNP
CCR5	1234	hgsc.bcm.edu	hg19	3	46414409	46414409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCR5	NM_000579	exon3	c.T16C	p.S6P	CAAGTGTCAAGTC	.	83.0	5.0	107.0	0.0	.	128	.	.	Atlas-SNP
SCAP	22937	hgsc.bcm.edu	hg19	3	47459317	47459317	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCAP	NM_012235	exon18	c.2448-1G>A	.	TGCCTGCTGGGGG	.	85.0	4.0	102.0	0.0	.	88	.	.	Atlas-SNP
SMARCC1	6599	hgsc.bcm.edu	hg19	3	47727630	47727630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMARCC1	NM_003074	exon14	c.A1294G	p.S432G	ATCGACTCTGATC	.	133.0	6.0	119.0	0.0	.	85	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48608294	48608294	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL7A1	NM_000094	exon94	c.G7272A	p.R2424R	CCTCACCCGCTCT	.	173.0	74.0	210.0	0.0	.	320	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	hg19	3	49722913	49722913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MST1	NM_020998	exon12	c.G1414A	p.D472N	GGGGGTCCAGGAT	.	421.0	22.0	366.0	0.0	.	84	.	.	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52430409	52430409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH1	NM_015512	exon71	c.T11285C	p.L3762P	TCTGGCTCACCAG	.	76.0	5.0	120.0	0.0	.	534	.	.	Atlas-SNP
NISCH	11188	hgsc.bcm.edu	hg19	3	52524124	52524124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NISCH	NM_007184	exon18	c.T3490C	p.S1164P	ATGTGGTCCTCGG	.	124.0	5.0	173.0	0.0	.	97	.	.	Atlas-SNP
CHDH	55349	hgsc.bcm.edu	hg19	3	53855776	53855776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHDH	NM_018397	exon5	c.A883G	p.S295G	CTCCACTCAGAAT	.	92.0	4.0	133.0	0.0	.	34	.	.	Atlas-SNP
SPATA12	353324	hgsc.bcm.edu	hg19	3	57107744	57107744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPATA12	NM_181727	exon2	c.T22C	p.C8R	CTGACTTGTGGGT	.	59.0	4.0	108.0	0.0	.	9	.	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	hg19	3	64619493	64619493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS9	NM_182920	exon13	c.A1919G	p.E640G	CATGGCTCCGTGT	.	106.0	5.0	138.0	0.0	.	206	.	.	Atlas-SNP
LMOD3	56203	hgsc.bcm.edu	hg19	3	69171278	69171278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMOD3	NM_198271	exon1	c.A260G	p.E87G	CGTTCCTCTTCCA	.	98.0	4.0	183.0	0.0	.	92	.	.	Atlas-SNP
MINA	84864	hgsc.bcm.edu	hg19	3	97666254	97666254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MINA	NM_001042533	exon8	c.A1100G	p.Q367R	TTAAACTGCAGTC	.	107.0	5.0	113.0	0.0	.	39	.	.	Atlas-SNP
PVRL3	25945	hgsc.bcm.edu	hg19	3	110841052	110841052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PVRL3	NM_001243286	exon4	c.C884A	p.A295E	CTGATGCAAATCC	.	117.0	6.0	183.0	0.0	.	78	.	.	Atlas-SNP
FBXO40	51725	hgsc.bcm.edu	hg19	3	121341494	121341494	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO40	NM_016298	exon3	c.A1218G	p.R406R	GGAAAGAGAACTC	.	123.0	5.0	178.0	0.0	.	108	.	.	Atlas-SNP
DIRC2	84925	hgsc.bcm.edu	hg19	3	122514376	122514376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DIRC2	NM_032839	exon1	c.A337G	p.K113E	CTGGACAAGAGAG	.	35.0	4.0	54.0	0.0	.	25	.	.	Atlas-SNP
PTPLB	201562	hgsc.bcm.edu	hg19	3	123219490	123219490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPLB	NM_198402	exon6	c.T554C	p.L185P	ATTGTGAGCAGTT	.	131.0	6.0	150.0	0.0	.	11	.	.	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	hg19	3	124746183	124746183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	HEG1,NS,carcinoma,0,1	HEG1	NM_020733	exon3	c.C779T	p.P260L	AAGGACGGGCTCC	.	219.0	0.0	300.0	0.0	.	109	.	.	Atlas-SNP
PIK3R4	30849	hgsc.bcm.edu	hg19	3	130435361	130435361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3R4	NM_014602	exon9	c.A2210G	p.D737G	GTAATATCTTTAG	.	116.0	5.0	143.0	0.0	.	145	.	.	Atlas-SNP
SLCO2A1	6578	hgsc.bcm.edu	hg19	3	133672591	133672591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO2A1	NM_005630	exon5	c.A640G	p.I214V	CAGAGATGGCAAA	.	98.0	4.0	160.0	0.0	.	72	.	.	Atlas-SNP
PPP2R3A	5523	hgsc.bcm.edu	hg19	3	135720746	135720746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPP2R3A	NM_002718	exon2	c.A406G	p.N136D	AACTCTAACCATG	.	71.0	4.0	98.0	0.0	.	114	.	.	Atlas-SNP
TFDP2	7029	hgsc.bcm.edu	hg19	3	141678659	141678659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFDP2	NM_001178139	exon11	c.A908G	p.D303G	GTGTTGTCAAAAT	.	114.0	5.0	163.0	0.0	.	44	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	151107817	151107817	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED12L	NM_053002	exon36	c.C5397A	p.I1799I	GCCTATCTCCTCC	.	86.0	32.0	166.0	0.0	.	271	.	.	Atlas-SNP
IL12A	3592	hgsc.bcm.edu	hg19	3	159710910	159710910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL12A	NM_000882	exon3	c.A376G	p.K126E	TTAACCAAGGTAT	.	100.0	4.0	153.0	0.0	.	23	.	.	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	hg19	3	167006752	167006752	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZBBX	NM_001199201	exon19	c.A1899G	p.P633P	ATGGTCTGGAATC	.	138.0	8.0	200.0	0.0	.	299	.	.	Atlas-SNP
MFN1	55669	hgsc.bcm.edu	hg19	3	179085315	179085315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MFN1	NM_033540	exon8	c.T842C	p.F281S	GTATCTTCTTTGT	.	100.0	4.0	147.0	0.0	.	72	.	.	Atlas-SNP
ATP13A3	79572	hgsc.bcm.edu	hg19	3	194175043	194175043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP13A3	NM_024524	exon8	c.G709A	p.A237T	CAATAGCTAGAGC	.	80.0	4.0	107.0	0.0	.	94	.	.	Atlas-SNP
NCBP2	22916	hgsc.bcm.edu	hg19	3	196664445	196664445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCBP2	NM_007362	exon3	c.G335A	p.R112H	TCTGTGCGAATGA	.	73.0	4.0	99.0	0.0	.	12	.	.	Atlas-SNP
FAM193A	8603	hgsc.bcm.edu	hg19	4	2659604	2659604	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM193A	NM_001256667	exon7	c.A585G	p.E195E	TGAAGAACAGGTA	.	71.0	4.0	93.0	0.0	.	103	.	.	Atlas-SNP
GPR125	166647	hgsc.bcm.edu	hg19	4	22439915	22439915	+	Missense_Mutation	SNP	G	G	C	rs147843055	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	GPR125,colon,carcinoma,0,2	GPR125	NM_145290	exon8	c.C1049G	p.P350R	TCTGGAGGACAGT	.	256.0	0.0	346.0	0.0	.	118	.	.	Atlas-SNP
ANAPC4	29945	hgsc.bcm.edu	hg19	4	25390352	25390352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANAPC4	NM_013367	exon6	c.T457C	p.S153P	AACACCTCAAAAA	.	100.0	5.0	128.0	0.0	.	61	.	.	Atlas-SNP
STIM2	57620	hgsc.bcm.edu	hg19	4	26997053	26997053	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STIM2	NM_001169118	exon4	c.A450G	p.E150E	TGTTGAACTACCC	.	95.0	4.0	145.0	0.0	.	77	.	.	Atlas-SNP
TLR1	7096	hgsc.bcm.edu	hg19	4	38799868	38799868	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR1	NM_003263	exon4	c.G585C	p.V195V	GGGGAACACAATG	.	146.0	63.0	190.0	0.0	.	70	.	.	Atlas-SNP
TLR6	10333	hgsc.bcm.edu	hg19	4	38831040	38831040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR6	NM_006068	exon2	c.A55G	p.I19V	TTATGATCATAAG	.	74.0	4.0	100.0	0.0	.	67	.	.	Atlas-SNP
FIP1L1	81608	hgsc.bcm.edu	hg19	4	54319252	54319252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FIP1L1	NM_030917	exon16	c.A1451G	p.E484G	CCAGAGAGAGAGA	.	82.0	4.0	171.0	0.0	.	60	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55594207	55594207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	KIT,NS,carcinoma,0,1	KIT	NM_000222	exon13	c.T1910C	p.L637P	AAGCCCTCATGTC	.	164.0	7.0	286.0	0.0	.	7396	.	.	Atlas-SNP
POLR2B	5431	hgsc.bcm.edu	hg19	4	57871855	57871855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLR2B	NM_000938	exon9	c.C1187T	p.A396V	ATCTTGCTGGGCC	.	103.0	5.0	83.0	0.0	.	108	.	.	Atlas-SNP
POLR2B	5431	hgsc.bcm.edu	hg19	4	57883331	57883331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLR2B	NM_000938	exon15	c.A2078G	p.Y693C	CCACATATACACA	.	357.0	154.0	440.0	1.0	.	108	.	.	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72102334	72102334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC4A4	NM_001098484	exon2	c.T41C	p.L14P	CCTTCCTCAAGCA	.	91.0	4.0	127.0	0.0	.	269	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74282071	74282071	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ALB,NS,carcinoma,+1,1	ALB	NM_000477	exon10	c.1289+1G>A	.	GAATGCGTAAGTA	.	111.0	41.0	118.0	0.0	.	132	.	.	Atlas-SNP
G3BP2	9908	hgsc.bcm.edu	hg19	4	76572284	76572284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	G3BP2	NM_012297	exon10	c.A986G	p.D329G	TGACTATCTGGAT	.	118.0	5.0	137.0	0.0	.	52	.	.	Atlas-SNP
CNOT6L	246175	hgsc.bcm.edu	hg19	4	78652675	78652675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT6L	NM_144571	exon9	c.A890G	p.K297R	GTATGCTTCTGCA	.	96.0	4.0	144.0	0.0	.	57	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79458204	79458204	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FRAS1	NM_025074	exon72	c.T11148C	p.A3716A	TTCTGCTTACAAA	.	96.0	4.0	149.0	0.0	.	779	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87735675	87735675	+	Missense_Mutation	SNP	C	C	A	rs373179030	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPN13	NM_080685	exon48	c.C7444A	p.Q2482K	GAAGAGCAAAAAC	.	397.0	185.0	565.0	0.0	.	203	.	.	Atlas-SNP
EGF	1950	hgsc.bcm.edu	hg19	4	110925702	110925702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EGF	NM_001963	exon22	c.A3215G	p.E1072G	CTTATGAGGAGTC	.	73.0	4.0	117.0	0.0	.	113	.	.	Atlas-SNP
ALPK1	80216	hgsc.bcm.edu	hg19	4	113353286	113353286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ALPK1,NS,carcinoma,0,1	ALPK1	NM_001102406	exon11	c.G2583C	p.M861I	CAGCATGGATGTT	.	128.0	0.0	198.0	0.0	.	125	.	.	Atlas-SNP
SPRY1	10252	hgsc.bcm.edu	hg19	4	124323536	124323536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPRY1	NM_001258039	exon2	c.T790C	p.S264P	GCCATGTCTTTAT	.	98.0	4.0	155.0	0.0	.	28	.	.	Atlas-SNP
FGA	2243	hgsc.bcm.edu	hg19	4	155511792	155511792	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FGA	NM_000508	exon1	c.A48G	p.T16T	CCATGCTGTGCCC	.	100.0	4.0	119.0	0.0	.	179	.	.	Atlas-SNP
FASTKD3	79072	hgsc.bcm.edu	hg19	5	7868134	7868134	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTKD3	NM_024091	exon2	c.T63C	p.A21A	AGCCAGAGCTCTA	.	98.0	4.0	103.0	0.0	.	88	.	.	Atlas-SNP
FAM173B	134145	hgsc.bcm.edu	hg19	5	10236710	10236710	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM173B	NM_199133	exon3	c.G324A	p.K108K	CCCTTTCTTCGCA	.	91.0	4.0	101.0	0.0	.	24	.	.	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	hg19	5	14286982	14286982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIO	NM_007118	exon4	c.A350G	p.E117G	GCAGCGAGGAGGT	.	98.0	4.0	132.0	0.0	.	305	.	.	Atlas-SNP
RAD17	5884	hgsc.bcm.edu	hg19	5	68687769	68687769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAD17	NM_133339	exon10	c.T1151C	p.V384A	AAGAGGTCCAAGC	.	184.0	8.0	233.0	0.0	.	49	.	.	Atlas-SNP
ACOT12	134526	hgsc.bcm.edu	hg19	5	80640756	80640756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACOT12	NM_130767	exon8	c.A878G	p.D293G	TCCTTATCATCAG	.	101.0	5.0	167.0	0.0	.	57	.	.	Atlas-SNP
MCTP1	79772	hgsc.bcm.edu	hg19	5	94353090	94353090	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MCTP1	NM_024717	exon2	c.A819G	p.L273L	AGCAGCTAAACTT	.	109.0	5.0	107.0	0.0	.	110	.	.	Atlas-SNP
CAMK4	814	hgsc.bcm.edu	hg19	5	110820086	110820086	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAMK4	NM_001744	exon11	c.A1344G	p.A448A	GGCAGCAGCTCCC	.	80.0	4.0	107.0	0.0	.	77	.	.	Atlas-SNP
AP3S1	1176	hgsc.bcm.edu	hg19	5	115238635	115238635	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	AP3S1,NS,carcinoma,0,2	AP3S1	NM_001284	exon5	c.T399C	p.N133N	GACAAATATGAAT	.	100.0	4.0	97.0	0.0	.	25	.	.	Atlas-SNP
MEGF10	84466	hgsc.bcm.edu	hg19	5	126792818	126792818	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MEGF10	NM_001256545	exon25	c.3233-2A>G	.	TATCACAGAACCT	.	91.0	4.0	156.0	0.0	.	152	.	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130766663	130766663	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	RAPGEF6_ENST00000509018,NS,carcinoma,0,2	RAPGEF6	NM_001164387	exon28	c.C4393G	p.Q1465E	CTCTCTGTTTAAC	.	197.0	0.0	270.0	0.0	.	361	.	.	Atlas-SNP
HSPA4	3308	hgsc.bcm.edu	hg19	5	132432855	132432855	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSPA4	NM_002154	exon15	c.T1806C	p.G602G	TCAGGGTAAGATG	.	114.0	5.0	115.0	0.0	.	68	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139864753	139864753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKHD1	NM_017747	exon12	c.T1918C	p.S640P	GTAGTGTCGCTGG	.	140.0	8.0	166.0	0.0	.	233	.	.	Atlas-SNP
PCDHA6	56142	hgsc.bcm.edu	hg19	5	140209711	140209711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHA6	NM_018909	exon1	c.T2035C	p.S679P	AAGGCGTCATCAC	.	133.0	6.0	233.0	0.0	.	442	.	.	Atlas-SNP
PCDHB1	29930	hgsc.bcm.edu	hg19	5	140433196	140433196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHB1	NM_013340	exon1	c.T2141C	p.V714A	TACATGTCTACCA	.	142.0	7.0	165.0	0.0	.	148	.	.	Atlas-SNP
PCDHGA2	56113	hgsc.bcm.edu	hg19	5	140720687	140720687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHGA2	NM_018915	exon1	c.C2149T	p.R717W	AGGCTGCGGCGCT	.	342.0	132.0	399.0	0.0	.	205	.	.	Atlas-SNP
PCDHGB2	56103	hgsc.bcm.edu	hg19	5	140741739	140741739	+	Silent	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	PCDHGB2_ENST00000522605,NS,carcinoma,+1,1	PCDHGB2	NM_018923	exon1	c.G2037C	p.R679R	CCGCCGGGAGCCC	.	183.0	0.0	257.0	1.0	.	196	.	.	Atlas-SNP
CAMK2A	815	hgsc.bcm.edu	hg19	5	149629865	149629865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAMK2A	NM_171825	exon11	c.C824A	p.S275Y	ACGGTGGAGCGGT	.	77.0	26.0	106.0	0.0	.	42	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	hg19	5	156721858	156721858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037332	exon4	c.G274C	p.A92P	TCCCGGGCCATTC	.	225.0	10.0	329.0	0.0	.	354	.	.	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	hg19	5	161569294	161569294	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GABRG2	NM_198903	exon8	c.G1014A	p.K338K	CAATAAGGATGCT	.	167.0	63.0	240.0	0.0	.	142	.	.	Atlas-SNP
KCNIP1	30820	hgsc.bcm.edu	hg19	5	170145819	170145819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNIP1	NM_001034837	exon3	c.A152G	p.E51G	GACTGGAGCAGCT	.	144.0	6.0	190.0	0.0	.	66	.	.	Atlas-SNP
GPRIN1	114787	hgsc.bcm.edu	hg19	5	176025442	176025442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPRIN1	NM_052899	exon2	c.A1394G	p.D465G	ATGGGGTCCTCCC	.	119.0	5.0	183.0	0.0	.	77	.	.	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	hg19	5	176518005	176518005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	FGFR4_ENST00000292408,bladder,carcinoma,0,2	FGFR4	NM_022963	exon4	c.T503C	p.V168A	ACACCGTCAAGTT	.	98.0	4.0	126.0	1.0	.	174	.	.	Atlas-SNP
C5orf60	285679	hgsc.bcm.edu	hg19	5	179070461	179070461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C5orf60	NM_001142306	exon3	c.A311G	p.N104S	TCAAGGTTCTCCA	.	74.0	4.0	117.0	0.0	.	24	.	.	Atlas-SNP
RREB1	6239	hgsc.bcm.edu	hg19	6	7246876	7246876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RREB1	NM_001003699	exon12	c.A4193G	p.E1398G	CTGAGGAGAGCAC	.	45.0	5.0	97.0	0.0	.	242	.	.	Atlas-SNP
SYCP2L	221711	hgsc.bcm.edu	hg19	6	10942722	10942722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYCP2L	NM_001040274	exon22	c.T1844C	p.L615P	GTGAGCTCTCTTC	.	74.0	4.0	95.0	0.0	.	101	.	.	Atlas-SNP
KIAA0319	9856	hgsc.bcm.edu	hg19	6	24596529	24596529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	KIAA0319,NS,adenocarcinoma,0,1	KIAA0319	NM_001168377	exon3	c.T373C	p.S125P	AGGGGGAGCCCCT	.	139.0	6.0	170.0	2.0	.	117	.	.	Atlas-SNP
SLC17A2	10246	hgsc.bcm.edu	hg19	6	25917264	25917264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC17A2	NM_005835	exon7	c.A701G	p.D234G	ATGGGGTCATCAT	.	124.0	5.0	150.0	0.0	.	70	.	.	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	hg19	6	26056377	26056377	+	Missense_Mutation	SNP	C	C	T	rs186228942	bycluster;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H1C	NM_005319	exon1	c.G280A	p.V94M	TTTGCACCAGAGT	.	240.0	103.0	318.0	1.0	.	80	.	C|1.000;G|0.000	Atlas-SNP
HIST1H4G	8369	hgsc.bcm.edu	hg19	6	26246913	26246913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H4G	NM_003547	exon1	c.T293C	p.L98P	CCTTACAGGGTTC	.	115.0	40.0	138.0	0.0	.	18	.	.	Atlas-SNP
EHMT2	10919	hgsc.bcm.edu	hg19	6	31850734	31850734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EHMT2	NM_006709	exon24	c.A3047G	p.E1016G	TTACACTCGAAAA	.	92.0	4.0	128.0	0.0	.	45	.	.	Atlas-SNP
C2	717	hgsc.bcm.edu	hg19	6	31903769	31903769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C2	NM_000063	exon7	c.T919C	p.S307P	CTCATGTCTGTCC	.	93.0	4.0	124.0	0.0	.	50	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32169107	32169107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOTCH4	NM_004557	exon22	c.A3926G	p.D1309G	TGCTGGTCTAGGG	.	93.0	4.0	129.0	0.0	.	201	.	.	Atlas-SNP
RING1	6015	hgsc.bcm.edu	hg19	6	33180112	33180112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RING1	NM_002931	exon7	c.A1157G	p.E386G	TGAATGAGAAATT	.	154.0	7.0	191.0	0.0	.	40	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38690855	38690855	+	Silent	SNP	G	G	A	rs180723141	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	DNAH8_ENST00000373278,colon,carcinoma,0,1	DNAH8	NM_001206927	exon2	c.G270A	p.P90P	TGCACCGCGACCG	.	118.0	44.0	168.0	0.0	.	1239	.	G|0.997;C|0.003	Atlas-SNP
SRF	6722	hgsc.bcm.edu	hg19	6	43143627	43143627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRF	NM_003131	exon3	c.G964A	p.V322M	GGGACTGTGCTGA	.	100.0	4.0	146.0	0.0	.	24	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65016918	65016918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142800	exon30	c.T6136C	p.W2046R	ATCTCCAGTTATT	.	64.0	5.0	80.0	0.0	.	527	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66200486	66200486	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142800	exon6	c.862+1G>T	.	TTTTTACCTGAAA	.	372.0	15.0	468.0	0.0	.	527	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	73102485	73102485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	RIMS1,rectum,carcinoma,0,1	RIMS1	NM_014989	exon31	c.C4591T	p.R1531C	GTTGGCCGCCAAA	.	80.0	33.0	143.0	0.0	.	278	.	.	Atlas-SNP
CD109	135228	hgsc.bcm.edu	hg19	6	74502402	74502402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD109	NM_133493	exon23	c.T2755C	p.Y919H	ATGCCTTATGGCT	.	99.0	4.0	106.0	0.0	.	170	.	.	Atlas-SNP
IBTK	25998	hgsc.bcm.edu	hg19	6	82910419	82910419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IBTK	NM_015525	exon20	c.G2797A	p.A933T	CCATTGCTGGAAT	.	100.0	4.0	157.0	0.0	.	128	.	.	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	hg19	6	83839069	83839069	+	Missense_Mutation	SNP	A	A	G	rs370284003		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOPEY1	NM_015018	exon16	c.A2183G	p.D728G	AAGGAGATGTAAA	.	121.0	5.0	168.0	0.0	.	190	.	.	Atlas-SNP
KIAA1009	22832	hgsc.bcm.edu	hg19	6	84930848	84930848	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1009	NM_014895	exon3	c.A99G	p.R33R	AGATTGTCTAGCT	.	115.0	5.0	178.0	0.0	.	119	.	.	Atlas-SNP
SNX14	57231	hgsc.bcm.edu	hg19	6	86259455	86259455	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNX14	NM_153816	exon8	c.A777G	p.K259K	TGTTGCTTTAGGA	.	73.0	4.0	94.0	0.0	.	58	.	.	Atlas-SNP
ZNF292	23036	hgsc.bcm.edu	hg19	6	87970226	87970226	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF292	NM_015021	exon8	c.A6879G	p.R2293R	TCCAAGAAGATTA	.	85.0	4.0	99.0	0.0	.	479	.	.	Atlas-SNP
FBXL4	26235	hgsc.bcm.edu	hg19	6	99328458	99328458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXL4	NM_012160	exon7	c.C1360A	p.Q454K	GGTGCTGAAGCTC	.	76.0	29.0	78.0	0.0	.	54	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106967099	106967099	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AIM1	NM_001624	exon2	c.T792C	p.V264V	GCCAGTTCACAAA	.	57.0	4.0	62.0	0.0	.	161	.	.	Atlas-SNP
TUBE1	51175	hgsc.bcm.edu	hg19	6	112397152	112397152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TUBE1	NM_016262	exon8	c.T800C	p.L267P	AGGTTGAGGAGCA	.	122.0	5.0	163.0	0.0	.	49	.	.	Atlas-SNP
HINT3	135114	hgsc.bcm.edu	hg19	6	126288056	126288056	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HINT3	NM_138571	exon2	c.A225G	p.K75K	CTTCAAAGATATC	.	70.0	4.0	97.0	0.0	.	14	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129636958	129636958	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	LAMA2,right_upper_lobe,carcinoma,0,1	LAMA2	NM_000426	exon26	c.G3787T	p.E1263X	GCTCGGGAAGAAA	.	69.0	30.0	70.0	0.0	.	481	.	.	Atlas-SNP
ENPP3	5169	hgsc.bcm.edu	hg19	6	132061522	132061522	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENPP3	NM_005021	exon24	c.2457+2T>A	.	GTCCTGTGAGTAT	.	83.0	4.0	145.0	0.0	.	117	.	.	Atlas-SNP
MYB	4602	hgsc.bcm.edu	hg19	6	135518299	135518299	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYB	NM_001130173	exon10	c.T1404C	p.P468P	CTTACCTCCTGCA	.	99.0	6.0	170.0	0.0	.	137	.	.	Atlas-SNP
TNFAIP3	7128	hgsc.bcm.edu	hg19	6	138200242	138200242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNFAIP3	NM_001270507	exon7	c.A1660G	p.S554G	AGCACCAGCCTCC	.	81.0	5.0	112.0	0.0	.	340	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138584101	138584101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1244	NM_020340	exon12	c.A1481G	p.E494G	CGTGGGAGTCAGG	.	63.0	4.0	127.0	0.0	.	236	.	.	Atlas-SNP
ECT2L	345930	hgsc.bcm.edu	hg19	6	139159510	139159510	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ECT2L	NM_001195037	exon4	c.A201G	p.S67S	GTTTTCAGAAAGG	.	154.0	7.0	213.0	0.0	.	75	.	.	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	hg19	6	146248366	146248366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SHPRH	NM_173082	exon15	c.T3187C	p.S1063P	CCTCCGAGGAGCG	.	118.0	10.0	153.0	0.0	.	169	.	.	Atlas-SNP
ADGB	79747	hgsc.bcm.edu	hg19	6	146987973	146987973	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADGB	NM_024694	exon7	c.A774G	p.R258R	CAGGAGAGAGCTG	.	92.0	7.0	135.0	0.0	.	93	.	.	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	hg19	6	155565153	155565153	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TIAM2	NM_012454	exon16	c.C3357T	p.S1119S	TTTGAGCTGCCTC	.	101.0	6.0	149.0	0.0	.	161	.	.	Atlas-SNP
CLDN20	49861	hgsc.bcm.edu	hg19	6	155596902	155596902	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CLDN20,NS,carcinoma,0,1	CLDN20	NM_001001346	exon2	c.G49C	p.G17R	TTATCTGGGGTCT	.	216.0	0.0	285.0	0.0	.	10	.	.	Atlas-SNP
TFB1M	51106	hgsc.bcm.edu	hg19	6	155619614	155619614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFB1M	NM_016020	exon3	c.G391A	p.D131N	CACCATCTTCCCA	.	63.0	4.0	56.0	0.0	.	30	.	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157511264	157511264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARID1B	NM_020732	exon15	c.A3782G	p.Q1261R	CCTACCAGCAGGG	.	92.0	4.0	123.0	0.0	.	320	.	.	Atlas-SNP
PNLDC1	154197	hgsc.bcm.edu	hg19	6	160230045	160230045	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PNLDC1	NM_173516	exon9	c.607-2A>G	.	CTTTTCAGGTGGT	.	115.0	5.0	172.0	0.0	.	66	.	.	Atlas-SNP
PDCD2	5134	hgsc.bcm.edu	hg19	6	170892201	170892201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDCD2	NM_002598	exon3	c.A602G	p.E201G	ATAATCTCATCTT	.	109.0	5.0	145.0	0.0	.	13	.	.	Atlas-SNP
SUN1	23353	hgsc.bcm.edu	hg19	7	881594	881594	+	Missense_Mutation	SNP	A	A	G	rs78842948	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUN1	NM_001171945	exon5	c.A341G	p.Q114R	CAAAACAGCGCAG	.	88.0	4.0	81.0	0.0	.	157	.	A|0.983;C|0.017	Atlas-SNP
HOXA7	3204	hgsc.bcm.edu	hg19	7	27194547	27194547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HOXA7	NM_006896	exon2	c.A674G	p.E225G	TCTTCCTCTTCTT	.	169.0	7.0	147.0	0.0	.	34	.	.	Atlas-SNP
ADCYAP1R1	117	hgsc.bcm.edu	hg19	7	31132336	31132336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADCYAP1R1	NM_001118	exon13	c.T1033C	p.S345P	AATGAGTCCAGCA	.	180.0	8.0	165.0	0.0	.	78	.	.	Atlas-SNP
DPY19L1	23333	hgsc.bcm.edu	hg19	7	35057514	35057514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DPY19L1	NM_015283	exon3	c.A172G	p.M58V	AAGCCATCTCCCT	.	103.0	6.0	86.0	0.0	.	56	.	.	Atlas-SNP
EPDR1	54749	hgsc.bcm.edu	hg19	7	37988590	37988590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	EPDR1,NS,carcinoma,0,1	EPDR1	NM_017549	exon2	c.G418T	p.G140W	TCCATCGGGGGGC	.	182.0	0.0	136.0	0.0	.	48	.	.	Atlas-SNP
PON1	5444	hgsc.bcm.edu	hg19	7	94935617	94935617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PON1	NM_000446	exon7	c.T760C	p.W254R	AAGTCCAATTAGC	.	119.0	5.0	109.0	0.0	.	55	.	.	Atlas-SNP
PON2	5445	hgsc.bcm.edu	hg19	7	95035443	95035443	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PON2	NM_000305	exon8	c.T894C	p.P298P	CGAGGGAGGATTG	.	56.0	4.0	72.0	0.0	.	32	.	.	Atlas-SNP
LMTK2	22853	hgsc.bcm.edu	hg19	7	97821054	97821054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMTK2	NM_014916	exon11	c.G1277A	p.W426X	AGCAGTGGAACGC	.	218.0	110.0	220.0	1.0	.	228	.	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	hg19	7	99091600	99091600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ZNF394,NS,carcinoma,0,1	ZNF394	NM_032164	exon3	c.C1238A	p.P413Q	GTGTACGGCTTCT	.	288.0	0.0	285.0	0.0	.	48	.	.	Atlas-SNP
PAX4	5078	hgsc.bcm.edu	hg19	7	127252045	127252045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAX4	NM_006193	exon7	c.A701G	p.Q234R	AGCCCCTGGGAAG	.	93.0	4.0	87.0	0.0	.	66	.	.	Atlas-SNP
ZNF746	155061	hgsc.bcm.edu	hg19	7	149172419	149172419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF746	NM_001163474	exon7	c.A994G	p.S332G	CCTGGCTTTCCCA	.	90.0	4.0	59.0	0.0	.	68	.	.	Atlas-SNP
KRBA1	84626	hgsc.bcm.edu	hg19	7	149420823	149420823	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRBA1	NM_032534	exon8	c.773-2A>T	.	TTCCTTAGTGAAG	.	126.0	9.0	144.0	0.0	.	68	.	.	Atlas-SNP
KRBA1	84626	hgsc.bcm.edu	hg19	7	149420824	149420824	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRBA1	NM_032534	exon8	c.773-1G>A	.	TCCTTAGTGAAGA	.	128.0	8.0	147.0	0.0	.	68	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149486904	149486904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon31	c.A4678G	p.S1560G	AGCGCCAGCCCTG	.	114.0	5.0	104.0	0.0	.	.	.	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151859254	151859254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL3	NM_170606	exon43	c.A11408G	p.D3803G	GTACAGTCATCTT	.	147.0	6.0	166.0	0.0	.	1564	.	.	Atlas-SNP
DLGAP2	9228	hgsc.bcm.edu	hg19	8	1497492	1497492	+	Silent	SNP	C	C	T	rs375164454		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP2	NM_004745	exon2	c.C633T	p.P211P	CCGGCCCGGCATG	.	61.0	42.0	103.0	0.0	.	292	.	.	Atlas-SNP
ERI1	90459	hgsc.bcm.edu	hg19	8	8865648	8865648	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERI1	NM_153332	exon2	c.C277G	p.L93V	TTCAAGCTTGAAA	.	50.0	31.0	77.0	0.0	.	20	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	hg19	8	10467809	10467809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RP1L1	NM_178857	exon4	c.T3799C	p.C1267R	AAGCGCAGGCTCG	.	116.0	5.0	272.0	0.0	.	453	.	.	Atlas-SNP
SLC7A2	6542	hgsc.bcm.edu	hg19	8	17417985	17417985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC7A2	NM_001164771	exon9	c.T1567C	p.S523P	TGCCCCTCCCTTC	.	93.0	5.0	207.0	0.0	.	157	.	.	Atlas-SNP
PCM1	5108	hgsc.bcm.edu	hg19	8	17829875	17829875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCM1	NM_006197	exon23	c.A3622G	p.R1208G	AGCAGTAGGACAC	.	95.0	5.0	182.0	0.0	.	120	.	.	Atlas-SNP
SH2D4A	63898	hgsc.bcm.edu	hg19	8	19190562	19190562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH2D4A	NM_022071	exon3	c.T278C	p.L93P	ATGTGCTCTGTAA	.	63.0	4.0	142.0	0.0	.	49	.	.	Atlas-SNP
CDCA2	157313	hgsc.bcm.edu	hg19	8	25325868	25325868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDCA2	NM_152562	exon6	c.A674G	p.Q225R	GTCTCCAGATATT	.	71.0	4.0	145.0	0.0	.	78	.	.	Atlas-SNP
PPP2R2A	5520	hgsc.bcm.edu	hg19	8	26211994	26211994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPP2R2A	NM_001177591	exon4	c.A221G	p.Q74R	AAATCCAGTCTCA	.	68.0	4.0	162.0	0.0	.	44	.	.	Atlas-SNP
MAK16	84549	hgsc.bcm.edu	hg19	8	33346292	33346292	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAK16	NM_032509	exon4	c.T216C	p.A72A	AGCGGCTTTTCCT	.	75.0	4.0	159.0	0.0	.	25	.	.	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	hg19	8	38148152	38148152	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WHSC1L1	NM_023034	exon17	c.A2959T	p.N987Y	GGATGTTCAGTGG	.	149.0	53.0	173.0	0.0	.	137	.	.	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	hg19	8	38148153	38148153	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WHSC1L1	NM_023034	exon17	c.G2958C	p.L986L	GATGTTCAGTGGC	.	148.0	52.0	174.0	0.0	.	137	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52321457	52321457	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PXDNL	NM_144651	exon17	c.T2727C	p.A909A	TCTGAGAGCCTGG	.	92.0	5.0	66.0	0.0	.	414	.	.	Atlas-SNP
LYPLA1	10434	hgsc.bcm.edu	hg19	8	55014376	55014376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYPLA1	NM_006330	exon1	c.G8A	p.G3D	TTATTGCCGCACA	.	137.0	6.0	170.0	0.0	.	15	.	.	Atlas-SNP
TGS1	96764	hgsc.bcm.edu	hg19	8	56711514	56711514	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TGS1	NM_024831	exon8	c.A1584G	p.E528E	GGATGAAGAAGCA	.	76.0	4.0	55.0	0.0	.	66	.	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	hg19	8	72951124	72951124	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRPA1	NM_007332	exon19	c.T2271C	p.D757D	TGAATGATCACTA	.	95.0	4.0	87.0	0.0	.	256	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73480466	73480466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNB2	NM_004770	exon2	c.A497G	p.E166G	GAGAAGAGTTTGA	.	110.0	5.0	118.0	0.0	.	228	.	.	Atlas-SNP
RAD54B	25788	hgsc.bcm.edu	hg19	8	95390864	95390864	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAD54B	NM_001205263	exon12	c.1696-2A>G	.	ATTGCCTATAGAA	.	97.0	28.0	101.0	0.0	.	88	.	.	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	hg19	8	121170404	121170404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL14A1	NM_021110	exon3	c.T124C	p.S42P	GTAATATCTCATG	.	121.0	5.0	152.0	0.0	.	292	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125110040	125110040	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FER1L6	NM_001039112	exon37	c.T4799G	p.V1600G	TGAGAGTGACCAT	.	123.0	5.0	147.0	0.0	.	268	.	.	Atlas-SNP
ZFAT	57623	hgsc.bcm.edu	hg19	8	135533127	135533127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFAT	NM_020863	exon13	c.A3233G	p.E1078G	ATTACCTCCCACT	.	143.0	7.0	130.0	0.0	.	265	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139672699	139672699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL22A1	NM_152888	exon44	c.A3265G	p.R1089G	GCCCTCTTTCTCC	.	163.0	9.0	151.0	0.0	.	390	.	.	Atlas-SNP
ARC	23237	hgsc.bcm.edu	hg19	8	143694836	143694836	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARC	NM_015193	exon1	c.A797G	p.E266G	TTGAACTCCACCC	.	117.0	7.0	115.0	0.0	.	34	.	.	Atlas-SNP
ADCK5	203054	hgsc.bcm.edu	hg19	8	145617320	145617320	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADCK5	NM_174922	exon11	c.A1125G	p.K375K	CGGGAAAGCGGAG	.	128.0	6.0	100.0	0.0	.	36	.	.	Atlas-SNP
DMRT3	58524	hgsc.bcm.edu	hg19	9	977116	977116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DMRT3	NM_021240	exon1	c.T115C	p.S39P	GTCCTGTCCTGGC	.	94.0	4.0	168.0	0.0	.	83	.	.	Atlas-SNP
KIAA0020	9933	hgsc.bcm.edu	hg19	9	2834151	2834151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA0020	NM_014878	exon4	c.A320G	p.K107R	TTGGGCTTCTTGG	.	96.0	4.0	112.0	0.0	.	56	.	.	Atlas-SNP
RPS6	6194	hgsc.bcm.edu	hg19	9	19378464	19378464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPS6	NM_001010	exon4	c.T398C	p.L133P	GGGCCCAGGCGGC	.	105.0	5.0	139.0	0.0	.	25	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27169606	27169606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	TEK_ENST00000380036,colon,carcinoma,0,4	TEK	NM_000459	exon4	c.T607C	p.F203L	TCGGCCTTCACCA	.	82.0	4.0	101.0	0.0	.	250	.	.	Atlas-SNP
NFX1	4799	hgsc.bcm.edu	hg19	9	33307273	33307273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NFX1	NM_147134	exon5	c.A1352G	p.Q451R	CTGGCCAGGACTG	.	128.0	6.0	207.0	0.0	.	85	.	.	Atlas-SNP
AQP3	360	hgsc.bcm.edu	hg19	9	33442208	33442208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AQP3	NM_004925	exon6	c.A712G	p.T238A	GGCCGGTCCTGGG	.	105.0	5.0	121.0	0.0	.	18	.	.	Atlas-SNP
UBAP2	55833	hgsc.bcm.edu	hg19	9	33971700	33971700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBAP2	NM_018449	exon8	c.A628G	p.T210A	GCTTTGTCCCACA	.	132.0	6.0	180.0	0.0	.	82	.	.	Atlas-SNP
OR13J1	392309	hgsc.bcm.edu	hg19	9	35870002	35870002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	OR13J1,colon,carcinoma,0,1	OR13J1	NM_001004487	exon1	c.C397G	p.H133D	GCACGTGGTACCT	.	135.0	0.0	209.0	0.0	.	37	.	.	Atlas-SNP
PTAR1	375743	hgsc.bcm.edu	hg19	9	72338481	72338481	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTAR1	NM_001099666	exon6	c.A708G	p.G236G	GTGAAATCCACTG	.	143.0	6.0	234.0	0.0	.	46	.	.	Atlas-SNP
TMEM2	23670	hgsc.bcm.edu	hg19	9	74347404	74347404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM2	NM_013390	exon7	c.A1426G	p.I476V	CGTCTATGATCTC	.	112.0	41.0	174.0	0.0	.	112	.	.	Atlas-SNP
RORB	6096	hgsc.bcm.edu	hg19	9	77249628	77249628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	RORB_ENST00000376896,NS,carcinoma,0,1	RORB	NM_006914	exon3	c.A175G	p.R59G	ACGAACAGAAACC	.	95.0	5.0	128.0	0.0	.	89	.	.	Atlas-SNP
ROR2	4920	hgsc.bcm.edu	hg19	9	94493324	94493324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ROR2	NM_004560	exon7	c.T1051C	p.S351P	TGCTGGACAGGTG	.	124.0	5.0	176.0	0.0	.	167	.	.	Atlas-SNP
C9orf156	51531	hgsc.bcm.edu	hg19	9	100672289	100672289	+	Missense_Mutation	SNP	C	C	T	rs371444295		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C9orf156	NM_016481	exon4	c.G1019A	p.R340Q	GTAAACCGCACTT	.	75.0	4.0	92.0	0.0	.	35	.	.	Atlas-SNP
TBC1D2	55357	hgsc.bcm.edu	hg19	9	100973055	100973055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TBC1D2	NM_001267571	exon8	c.A1556G	p.E519G	AGGGCCTCCTGCA	.	195.0	8.0	294.0	0.0	.	70	.	.	Atlas-SNP
PALM2-AKAP2	445815	hgsc.bcm.edu	hg19	9	112898992	112898992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PALM2-AKAP2	NM_007203	exon8	c.T1168C	p.S390P	ACCAGCTCACGGT	.	159.0	7.0	240.0	0.0	.	117	.	.	Atlas-SNP
MUSK	4593	hgsc.bcm.edu	hg19	9	113457797	113457797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUSK	NM_001166281	exon4	c.A473G	p.D158G	AGGGAGACAGCCC	.	89.0	4.0	115.0	0.0	.	112	.	.	Atlas-SNP
TLR4	7099	hgsc.bcm.edu	hg19	9	120476424	120476424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR4	NM_138554	exon3	c.T2018C	p.I673T	AAAACATCTATGA	.	93.0	4.0	125.0	0.0	.	220	.	.	Atlas-SNP
RABGAP1	23637	hgsc.bcm.edu	hg19	9	125772702	125772702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABGAP1	NM_012197	exon11	c.G1444C	p.E482Q	GAATCAGAAAGAG	.	75.0	31.0	84.0	0.0	.	164	.	.	Atlas-SNP
TTC16	158248	hgsc.bcm.edu	hg19	9	130493103	130493103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTC16	NM_144965	exon14	c.A2041G	p.S681G	AGGCAGAGCCTTA	.	171.0	7.0	225.0	0.0	.	55	.	.	Atlas-SNP
SH2D3C	10044	hgsc.bcm.edu	hg19	9	130536685	130536685	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH2D3C	NM_170600	exon2	c.A99G	p.R33R	GGATCGTCTCAGA	.	117.0	5.0	132.0	0.0	.	102	.	.	Atlas-SNP
NUP188	23511	hgsc.bcm.edu	hg19	9	131745770	131745770	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUP188	NM_015354	exon19	c.T1902C	p.R634R	TCTTCGTCACACA	.	99.0	4.0	167.0	0.0	.	140	.	.	Atlas-SNP
C9orf50	375759	hgsc.bcm.edu	hg19	9	132377810	132377810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C9orf50	NM_199350	exon4	c.A833G	p.E278G	AGGGTCTCGTCAG	.	88.0	4.0	105.0	0.0	.	25	.	.	Atlas-SNP
CEL	1056	hgsc.bcm.edu	hg19	9	135939849	135939849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEL	NM_001807	exon2	c.T134C	p.L45P	TCGGCCTCCTGGG	.	127.0	7.0	212.0	0.0	.	71	.	.	Atlas-SNP
REXO4	57109	hgsc.bcm.edu	hg19	9	136272192	136272192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	REXO4	NM_020385	exon8	c.A1154G	p.Q385R	GCATCCTGAATCT	.	100.0	4.0	165.0	0.0	.	27	.	.	Atlas-SNP
NSMF	26012	hgsc.bcm.edu	hg19	9	140350938	140350938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NSMF	NM_001130970	exon4	c.A629G	p.D210G	ATGTCGTCTAAGA	.	92.0	5.0	127.0	0.0	.	3	.	.	Atlas-SNP
EHMT1	79813	hgsc.bcm.edu	hg19	9	140611475	140611475	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EHMT1	NM_001145527	exon3	c.A483G	p.K161K	TGGCAAAGGCAGG	.	54.0	4.0	69.0	0.0	.	196	.	.	Atlas-SNP
LARP4B	23185	hgsc.bcm.edu	hg19	10	876909	876909	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	LARP4B,colon,carcinoma,0,2	LARP4B	NM_015155	exon9	c.A759G	p.E253E	TAGTGCTTCTACT	.	60.0	3.0	93.0	0.0	.	110	.	.	Atlas-SNP
PITRM1	10531	hgsc.bcm.edu	hg19	10	3199171	3199171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PITRM1	NM_014889	exon13	c.T1433C	p.L478P	TCCTGCAGGCACT	.	93.0	4.0	138.0	0.0	.	109	.	.	Atlas-SNP
VIM	7431	hgsc.bcm.edu	hg19	10	17278320	17278320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VIM	NM_003380	exon9	c.T1301C	p.V434A	CTCTGGTTGATAC	.	85.0	4.0	103.0	0.0	.	71	.	.	Atlas-SNP
CACNB2	783	hgsc.bcm.edu	hg19	10	18439889	18439889	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CACNB2	NM_201597	exon2	c.T198C	p.N66N	CTCAAATAGTTTT	.	127.0	48.0	169.0	0.0	.	220	.	.	Atlas-SNP
PTF1A	256297	hgsc.bcm.edu	hg19	10	23482645	23482645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTF1A	NM_178161	exon2	c.C797T	p.P266L	CCTCCCCCAGCGA	.	100.0	4.0	148.0	0.0	.	24	.	.	Atlas-SNP
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27322293	27322293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD26	NM_014915	exon25	c.A3668G	p.Q1223R	TGAAGTTGTCTCA	.	81.0	4.0	110.0	0.0	.	179	.	.	Atlas-SNP
PTCHD3	374308	hgsc.bcm.edu	hg19	10	27688005	27688005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCHD3	NM_001034842	exon4	c.T1522C	p.S508P	TAAAAGAGCTCAT	.	113.0	5.0	131.0	0.0	.	140	.	.	Atlas-SNP
ZEB1	6935	hgsc.bcm.edu	hg19	10	31809977	31809977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZEB1	NM_001174096	exon7	c.T1717C	p.S573P	GAGTCCTCTGTTT	.	114.0	5.0	107.0	0.0	.	173	.	.	Atlas-SNP
CUL2	8453	hgsc.bcm.edu	hg19	10	35328009	35328009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CUL2	NM_001198778	exon9	c.T773C	p.V258A	CCTAGAACCTATA	.	82.0	4.0	82.0	0.0	.	63	.	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37508232	37508232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD30A	NM_052997	exon34	c.C3424A	p.H1142N	GAATCACACCATC	.	164.0	54.0	244.0	0.0	.	448	.	.	Atlas-SNP
ZNF25	219749	hgsc.bcm.edu	hg19	10	38241944	38241944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF25	NM_145011	exon6	c.T482C	p.L161P	CTTATGAGGTCTT	.	87.0	4.0	119.0	0.0	.	66	.	.	Atlas-SNP
ZNF37A	7587	hgsc.bcm.edu	hg19	10	38407552	38407552	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF37A	NM_003421	exon7	c.A1473G	p.R491R	TATAAGACAGAAA	.	81.0	4.0	129.0	0.0	.	118	.	.	Atlas-SNP
FRMPD2	143162	hgsc.bcm.edu	hg19	10	49448531	49448531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FRMPD2	NM_001018071	exon6	c.A572G	p.E191G	CTTTTCTCCACCT	.	61.0	4.0	122.0	0.0	.	157	.	.	Atlas-SNP
HERC4	26091	hgsc.bcm.edu	hg19	10	69785411	69785411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC4	NM_022079	exon8	c.G800T	p.G267V	CCAGCTCCAAAAG	.	106.0	47.0	133.0	0.0	.	78	.	.	Atlas-SNP
HERC4	26091	hgsc.bcm.edu	hg19	10	69785412	69785412	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC4	NM_022079	exon8	c.G799T	p.G267X	CAGCTCCAAAAGT	.	101.0	42.0	132.0	0.0	.	78	.	.	Atlas-SNP
PPA1	5464	hgsc.bcm.edu	hg19	10	71969401	71969401	+	Silent	SNP	T	T	C	rs150430650		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.A552G	p.E184E	AGTAGCTTCTAAG	.	251.0	18.0	337.0	0.0	.	24	.	.	Atlas-SNP
PPA1	5464	hgsc.bcm.edu	hg19	10	71969413	71969413	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.T540C	p.P180P	GTAGCCAGGTTTC	.	245.0	18.0	318.0	0.0	.	24	.	.	Atlas-SNP
UNC5B	219699	hgsc.bcm.edu	hg19	10	73059012	73059012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UNC5B	NM_170744	exon17	c.T2816C	p.V939A	TGGCTGTGGCCAC	.	100.0	4.0	134.0	0.0	.	123	.	.	Atlas-SNP
CHST3	9469	hgsc.bcm.edu	hg19	10	73767478	73767478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHST3	NM_004273	exon3	c.A689G	p.E230G	TGTGCGAGGACCC	.	81.0	6.0	122.0	0.0	.	36	.	.	Atlas-SNP
MYOZ1	58529	hgsc.bcm.edu	hg19	10	75394369	75394369	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYOZ1	NM_021245	exon4	c.A375G	p.G125G	ATACTGTCCGGCA	.	120.0	5.0	169.0	0.0	.	24	.	.	Atlas-SNP
HECTD2	143279	hgsc.bcm.edu	hg19	10	93221940	93221940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HECTD2	NM_173497	exon5	c.C599T	p.T200I	TTAATACTGTAAG	.	95.0	4.0	124.0	0.0	.	60	.	.	Atlas-SNP
ENTPD1	953	hgsc.bcm.edu	hg19	10	97620281	97620281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENTPD1	NM_001164178	exon8	c.T1166C	p.V389A	AGAAAGTCTCTCA	.	119.0	6.0	149.0	0.0	.	44	.	.	Atlas-SNP
ANKRD2	26287	hgsc.bcm.edu	hg19	10	99337615	99337615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ANKRD2,NS,carcinoma,0,1	ANKRD2	NM_001129981	exon2	c.A227G	p.E76G	AGGATGAGAAGCA	.	70.0	3.0	77.0	0.0	.	27	.	.	Atlas-SNP
CHUK	1147	hgsc.bcm.edu	hg19	10	101953091	101953091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHUK	NM_001278	exon19	c.A2072G	p.D691G	GAATGATCATGTT	.	86.0	4.0	130.0	0.0	.	71	.	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	hg19	10	105160237	105160237	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDCD11	NM_014976	exon3	c.A186G	p.R62R	AAAGAGAGAAAGC	.	86.0	4.0	88.0	0.0	.	160	.	.	Atlas-SNP
GSTO1	9446	hgsc.bcm.edu	hg19	10	106022766	106022766	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSTO1	NM_004832	exon4	c.A396G	p.R132R	TATTAGAAGCCAA	.	80.0	4.0	94.0	0.0	.	14	.	.	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	hg19	10	113941524	113941524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPAM	NM_001244949	exon3	c.A19G	p.T7A	CAAGGGTCAGTGC	.	136.0	7.0	163.0	0.0	.	68	.	.	Atlas-SNP
HABP2	3026	hgsc.bcm.edu	hg19	10	115343043	115343043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HABP2	NM_004132	exon10	c.A1163G	p.Q388R	ATGAGCAGAGCTT	.	175.0	7.0	225.0	0.0	.	52	.	.	Atlas-SNP
PLEKHS1	79949	hgsc.bcm.edu	hg19	10	115529653	115529653	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHS1	NM_024889	exon7	c.A546G	p.Q182Q	TCTCCAAGACAAG	.	60.0	4.0	92.0	0.0	.	19	.	.	Atlas-SNP
PNLIPRP1	5407	hgsc.bcm.edu	hg19	10	118365014	118365014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PNLIPRP1	NM_006229	exon12	c.C1289T	p.P430L	CCCTCCCCAAAGT	.	132.0	6.0	212.0	0.0	.	82	.	.	Atlas-SNP
FAM175B	23172	hgsc.bcm.edu	hg19	10	126519940	126519940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM175B	NM_032182	exon8	c.A686G	p.K229R	TTGAAAAGAGTGA	.	85.0	4.0	94.0	0.0	.	39	.	.	Atlas-SNP
PTPRE	5791	hgsc.bcm.edu	hg19	10	129861413	129861413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRE	NM_006504	exon10	c.T692C	p.V231A	CCATCGTCATGTT	.	101.0	5.0	150.0	0.0	.	132	.	.	Atlas-SNP
PKP3	11187	hgsc.bcm.edu	hg19	11	397014	397014	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP3	NM_007183	exon3	c.G513A	p.G171G	GGTTGGGAGCCGG	.	40.0	17.0	37.0	0.0	.	36	.	.	Atlas-SNP
ANO9	338440	hgsc.bcm.edu	hg19	11	418960	418960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANO9	NM_001012302	exon21	c.T1964C	p.L655P	ACGGACAGGCTGT	.	157.0	7.0	177.0	0.0	.	61	.	.	Atlas-SNP
PTDSS2	81490	hgsc.bcm.edu	hg19	11	488548	488548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTDSS2	NM_030783	exon8	c.T755C	p.V252A	TGCTCGTCTGCAA	.	119.0	5.0	151.0	0.0	.	27	.	.	Atlas-SNP
TALDO1	6888	hgsc.bcm.edu	hg19	11	759019	759019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TALDO1	NM_006755	exon3	c.G291T	p.K97N	ACTAAAGAAGATT	.	121.0	48.0	160.0	0.0	.	25	.	.	Atlas-SNP
MMP26	56547	hgsc.bcm.edu	hg19	11	5010948	5010948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MMP26	NM_021801	exon2	c.T170C	p.L57P	CACAGCTCCTGCA	.	60.0	4.0	91.0	0.0	.	49	.	.	Atlas-SNP
PIK3C2A	5286	hgsc.bcm.edu	hg19	11	17139207	17139207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3C2A	NM_002645	exon18	c.A3047G	p.D1016G	AGGGCATCTTTGA	.	102.0	5.0	149.0	0.0	.	148	.	.	Atlas-SNP
SERGEF	26297	hgsc.bcm.edu	hg19	11	18014534	18014534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SERGEF	NM_012139	exon7	c.A629G	p.E210G	GAATTCTCTAGAC	.	86.0	4.0	160.0	0.0	.	38	.	.	Atlas-SNP
CCDC73	493860	hgsc.bcm.edu	hg19	11	32739625	32739625	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC73	NM_001008391	exon3	c.A204G	p.E68E	CACCTTTTGCCAT	.	45.0	5.0	63.0	0.0	.	136	.	.	Atlas-SNP
UBE2L6	9246	hgsc.bcm.edu	hg19	11	57327822	57327822	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBE2L6	NM_004223	exon2	c.T111C	p.A37A	GAGGAGAGCGTGC	.	95.0	6.0	171.0	0.0	.	20	.	.	Atlas-SNP
SERPING1	710	hgsc.bcm.edu	hg19	11	57369544	57369544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SERPING1	NM_001032295	exon3	c.T587C	p.I196T	AGAGCATCCTCTC	.	137.0	6.0	144.0	0.0	.	57	.	.	Atlas-SNP
OR5B2	390190	hgsc.bcm.edu	hg19	11	58190586	58190586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR5B2	NM_001005566	exon1	c.A149G	p.D50G	CAAGAGTCCATCA	.	112.0	6.0	201.0	0.0	.	75	.	.	Atlas-SNP
PATL1	219988	hgsc.bcm.edu	hg19	11	59419993	59419993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PATL1	NM_152716	exon11	c.A1370G	p.E457G	GTGCGCTCCTTCT	.	113.0	5.0	200.0	0.0	.	92	.	.	Atlas-SNP
TMEM216	51259	hgsc.bcm.edu	hg19	11	61165731	61165731	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM216	NM_001173991	exon5	c.432-2C>A	.	TGCCATCGTATGG	.	107.0	5.0	178.0	0.0	.	14	.	.	Atlas-SNP
CPSF7	79869	hgsc.bcm.edu	hg19	11	61196700	61196700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CPSF7	NM_024811	exon2	c.A137G	p.E46G	ACTCCTTCTGACA	.	87.0	4.0	91.0	0.0	.	46	.	.	Atlas-SNP
OTUB1	55611	hgsc.bcm.edu	hg19	11	63764415	63764415	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OTUB1	NM_017670	exon5	c.423+2T>C	.	ACACGGTGAGCCC	.	70.0	5.0	103.0	0.0	.	19	.	.	Atlas-SNP
CTSW	1521	hgsc.bcm.edu	hg19	11	65649694	65649694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CTSW	NM_001335	exon4	c.T335C	p.V112A	GAGGGGTCCCCAG	.	130.0	6.0	194.0	0.0	.	18	.	.	Atlas-SNP
C11orf68	83638	hgsc.bcm.edu	hg19	11	65684997	65684997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C11orf68	NM_001135635	exon2	c.T815C	p.F272S	AGCTGGAAACGGC	.	91.0	4.0	101.0	0.0	.	15	.	.	Atlas-SNP
SART1	9092	hgsc.bcm.edu	hg19	11	65744188	65744188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SART1	NM_005146	exon14	c.A1808G	p.N603S	AGGAGAACATCGG	.	82.0	5.0	155.0	0.0	.	41	.	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66463797	66463797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPTBN2	NM_006946	exon20	c.A4229G	p.D1410G	CCGTAGTCATCCG	.	77.0	4.0	127.0	0.0	.	188	.	.	Atlas-SNP
ALDH3B2	222	hgsc.bcm.edu	hg19	11	67433122	67433122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALDH3B2	NM_001031615	exon7	c.A340G	p.I114V	TGACAATCTTGCC	.	121.0	6.0	138.0	0.0	.	46	.	.	Atlas-SNP
PPP6R3	55291	hgsc.bcm.edu	hg19	11	68382138	68382138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPP6R3	NM_001164164	exon23	c.A2369G	p.Q790R	GGAGTCAGCAGTA	.	114.0	5.0	132.0	0.0	.	159	.	.	Atlas-SNP
OR2AT4	341152	hgsc.bcm.edu	hg19	11	74799967	74799967	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	OR2AT4,NS,carcinoma,-2,1	OR2AT4	NM_001005285	exon1	c.C792T	p.Y264Y	GGCCACGTAGGCT	.	146.0	69.0	235.0	0.0	.	32	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78433744	78433744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001098816	exon24	c.T3769C	p.S1257P	TTCCAGAGGGGAA	.	100.0	4.0	146.0	0.0	.	.	.	.	Atlas-SNP
MTNR1B	4544	hgsc.bcm.edu	hg19	11	92715099	92715099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MTNR1B	NM_005959	exon2	c.A710G	p.E237G	AGCCAGAGAGCAG	.	112.0	5.0	156.0	0.0	.	75	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103229059	103229059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DYNC2H1	NM_001080463	exon84	c.T12149C	p.V4050A	CTCCTGTCCTCAA	.	106.0	5.0	139.0	0.0	.	246	.	.	Atlas-SNP
LAYN	143903	hgsc.bcm.edu	hg19	11	111425961	111425961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAYN	NM_001258390	exon6	c.C628T	p.L210F	CCTGTACTTCCAG	.	136.0	6.0	185.0	0.0	.	35	.	.	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	hg19	11	117222658	117222658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CEP164,caecum,carcinoma,0,1	CEP164	NM_001271933	exon4	c.A347G	p.K116R	AAAAAAAGGAAAA	.	62.0	3.0	57.0	0.0	.	121	.	.	Atlas-SNP
CD3G	917	hgsc.bcm.edu	hg19	11	118220461	118220461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD3G	NM_000073	exon3	c.A83G	p.N28S	CAGGAAACCACTT	.	116.0	5.0	123.0	0.0	.	31	.	.	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	hg19	11	118526376	118526376	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHLDB1	NM_001144758	exon21	c.C3936T	p.Y1312Y	GTACTACGACCAC	.	64.0	27.0	88.0	0.0	.	103	.	.	Atlas-SNP
TRAPPC4	51399	hgsc.bcm.edu	hg19	11	118889616	118889616	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRAPPC4	NM_016146	exon1	c.T111C	p.D37D	GCTGGATCTGCTG	.	74.0	4.0	119.0	0.0	.	8	.	.	Atlas-SNP
OR10S1	219873	hgsc.bcm.edu	hg19	11	123847962	123847962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR10S1	NM_001004474	exon1	c.A437G	p.Y146C	ACTGGGTAGTGCA	.	90.0	4.0	147.0	0.0	.	78	.	.	Atlas-SNP
OR10G9	219870	hgsc.bcm.edu	hg19	11	123894415	123894415	+	Silent	SNP	G	G	C	rs150463109	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR10G9	NM_001001953	exon1	c.G696C	p.G232G	AGAGGGGAGGCAC	.	376.0	173.0	441.0	0.0	.	80	.	G|0.997;T|0.003	Atlas-SNP
PATE3	100169851	hgsc.bcm.edu	hg19	11	125659284	125659284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PATE3	NM_001129883	exon2	c.T53C	p.V18A	CAGCAGTGACATC	.	100.0	4.0	113.0	0.0	.	4	.	.	Atlas-SNP
TEAD4	7004	hgsc.bcm.edu	hg19	12	3126664	3126664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TEAD4	NM_003213	exon6	c.G455A	p.R152Q	TCGCCCGGGGCCC	.	197.0	78.0	304.0	0.0	.	45	.	.	Atlas-SNP
C12orf5	57103	hgsc.bcm.edu	hg19	12	4459033	4459033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	C12orf5,NS,adenoma,0,1	C12orf5	NM_020375	exon4	c.G241A	p.V81I	ATGACGGTAAAGT	.	159.0	0.0	199.0	0.0	.	28	.	.	Atlas-SNP
KCNA5	3741	hgsc.bcm.edu	hg19	12	5154463	5154463	+	Missense_Mutation	SNP	G	G	C	rs76708779	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	KCNA5,NS,carcinoma,0,1	KCNA5	NM_002234	exon1	c.G1150C	p.G384R	GGGGGTGGAGGAG	.	222.0	0.0	273.0	1.0	.	138	.	G|0.995;A|0.005	Atlas-SNP
DPPA3	359787	hgsc.bcm.edu	hg19	12	7864219	7864219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DPPA3	NM_199286	exon1	c.T53C	p.L18P	AAATGCTCACCGA	.	107.0	5.0	122.0	0.0	.	26	.	.	Atlas-SNP
TAS2R10	50839	hgsc.bcm.edu	hg19	12	10978230	10978230	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TAS2R10	NM_023921	exon1	c.A639G	p.G213G	TCTCAATCCTGTC	.	114.0	5.0	131.0	0.0	.	44	.	.	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	hg19	12	18552597	18552597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3C2G	NM_004570	exon15	c.T2008C	p.S670P	AGACTCTCTGAAG	.	104.0	6.0	113.0	0.0	.	315	.	.	Atlas-SNP
C12orf39	80763	hgsc.bcm.edu	hg19	12	21684114	21684114	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C12orf39	NM_030572	exon6	c.T336C	p.S112S	AGACAGTCTGCTT	.	148.0	6.0	236.0	0.0	.	18	.	.	Atlas-SNP
CASC1	55259	hgsc.bcm.edu	hg19	12	25308338	25308338	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CASC1	NM_001082972	exon5	c.A381G	p.E127E	TCTCCTTTCTAGA	.	88.0	4.0	96.0	0.0	.	146	.	.	Atlas-SNP
PPFIBP1	8496	hgsc.bcm.edu	hg19	12	27800732	27800732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPFIBP1	NM_003622	exon6	c.A428G	p.E143G	TTGAAGAGCACAG	.	131.0	7.0	193.0	0.0	.	153	.	.	Atlas-SNP
TMTC1	83857	hgsc.bcm.edu	hg19	12	29667503	29667503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMTC1	NM_001193451	exon16	c.A2342G	p.K781R	TTTGGTTTCAGCT	.	99.0	4.0	117.0	0.0	.	147	.	.	Atlas-SNP
IPO8	10526	hgsc.bcm.edu	hg19	12	30818240	30818240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IPO8	NM_006390	exon13	c.A1342G	p.S448G	ATAAACTCTTCTA	.	150.0	6.0	174.0	0.0	.	105	.	.	Atlas-SNP
PKP2	5318	hgsc.bcm.edu	hg19	12	33031092	33031092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	PKP2,caecum,carcinoma,0,1	PKP2	NM_004572	exon3	c.T722C	p.L241P	TACGTGAGCAGGG	.	175.0	7.0	249.0	2.0	.	110	.	.	Atlas-SNP
PRICKLE1	144165	hgsc.bcm.edu	hg19	12	42858256	42858256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRICKLE1	NM_001144882	exon7	c.T1580C	p.L527P	GGTTTCAGGTCTG	.	264.0	98.0	328.0	0.0	.	105	.	.	Atlas-SNP
PUS7L	83448	hgsc.bcm.edu	hg19	12	44139933	44139933	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PUS7L	NM_001098614	exon4	c.T1179C	p.D393D	GACAATATCAAAG	.	89.0	4.0	111.0	0.0	.	73	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	hg19	12	48387630	48387630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL2A1	NM_001844	exon14	c.G886A	p.D296N	CACCGTCCAGGCC	.	169.0	71.0	253.0	0.0	.	368	.	.	Atlas-SNP
FAM186B	84070	hgsc.bcm.edu	hg19	12	49993487	49993487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM186B	NM_032130	exon4	c.A1936G	p.T646A	GCCAGGTCAGCCT	.	86.0	4.0	119.0	0.0	.	72	.	.	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	hg19	12	50749223	50749223	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM186A	NM_001145475	exon4	c.A1392G	p.K464K	TGTGGCTTTTTTG	.	126.0	6.0	176.0	0.0	.	181	.	.	Atlas-SNP
KRT72	140807	hgsc.bcm.edu	hg19	12	52981443	52981443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	KRT72,caecum,carcinoma,+1,1	KRT72	NM_001146225	exon7	c.C1282T	p.R428C	GCTTGCGGTAGGT	.	161.0	0.0	267.0	0.0	.	70	.	.	Atlas-SNP
SARNP	84324	hgsc.bcm.edu	hg19	12	56154345	56154345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SARNP	NM_033082	exon10	c.A581G	p.E194G	GTATCCTCTGTGG	.	98.0	4.0	124.0	0.0	.	19	.	.	Atlas-SNP
MIP	4284	hgsc.bcm.edu	hg19	12	56848277	56848277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MIP	NM_012064	exon1	c.G121T	p.V41F	GCAGAACATGCAG	.	334.0	133.0	439.0	0.0	.	39	.	.	Atlas-SNP
TSPAN31	6302	hgsc.bcm.edu	hg19	12	58140374	58140374	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN31	NM_005981	exon4	c.A315G	p.T105T	TCAGACAGATGTC	.	122.0	5.0	208.0	0.0	.	20	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70928316	70928316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRB	NM_001109754	exon31	c.A6320G	p.D2107G	ATGTAGTCCCTGA	.	142.0	6.0	235.0	0.0	.	676	.	.	Atlas-SNP
NAP1L1	4673	hgsc.bcm.edu	hg19	12	76449901	76449901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	NAP1L1,NS,carcinoma,0,1	NAP1L1	NM_004537	exon7	c.A470G	p.K157R	TCATCTTTTTTCT	.	428.0	0.0	565.0	2.0	.	33	.	.	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	hg19	12	81851632	81851632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPFIA2	NM_001220476	exon4	c.T317C	p.L106P	TTTGTCAGTGCAG	.	95.0	4.0	118.0	0.0	.	207	.	.	Atlas-SNP
GALNT4	8693	hgsc.bcm.edu	hg19	12	89917665	89917665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GALNT4	NM_003774	exon1	c.A662G	p.D221G	AGGACGTCCCCAG	.	85.0	4.0	136.0	0.0	.	38	.	.	Atlas-SNP
PLXNC1	10154	hgsc.bcm.edu	hg19	12	94692568	94692568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLXNC1	NM_005761	exon27	c.A4235G	p.N1412S	AAACAAACAGGTG	.	63.0	4.0	56.0	0.0	.	135	.	.	Atlas-SNP
GAS2L3	283431	hgsc.bcm.edu	hg19	12	101018209	101018209	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GAS2L3	NM_174942	exon10	c.A1626G	p.G542G	CGATGGAGCCCCA	.	62.0	4.0	85.0	0.0	.	76	.	.	Atlas-SNP
GNPTAB	79158	hgsc.bcm.edu	hg19	12	102158140	102158140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GNPTAB	NM_024312	exon13	c.T2555C	p.I852T	CCTGTGATTTTCT	.	124.0	5.0	141.0	0.0	.	120	.	.	Atlas-SNP
CCDC53	51019	hgsc.bcm.edu	hg19	12	102455700	102455700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC53	NM_016053	exon1	c.A41G	p.D14G	GTCAGGTCTATGC	.	74.0	4.0	84.0	0.0	.	14	.	.	Atlas-SNP
TCTN1	79600	hgsc.bcm.edu	hg19	12	111078953	111078953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCTN1	NM_001082537	exon9	c.A1103G	p.Q368R	TTCTTCAGGTAAG	.	82.0	4.0	140.0	0.0	.	37	.	.	Atlas-SNP
MAPKAPK5	8550	hgsc.bcm.edu	hg19	12	112330837	112330837	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPKAPK5	NM_139078	exon14	c.A1394T	p.E465V	TAGAAGAGCAAAC	.	95.0	40.0	143.0	0.0	.	56	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112685271	112685271	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001109662	exon28	c.A3930G	p.S1310S	CCTCAGTGATAGG	.	121.0	5.0	188.0	0.0	.	.	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116428868	116428868	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED13L	NM_015335	exon17	c.T3891C	p.A1297A	CACCAGAGCTTCG	.	94.0	4.0	106.0	0.0	.	193	.	.	Atlas-SNP
RFC5	5985	hgsc.bcm.edu	hg19	12	118464801	118464801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A771C	p.Q257H	GAATCAAGATTTC	.	72.0	30.0	123.0	0.0	.	35	.	.	Atlas-SNP
RFC5	5985	hgsc.bcm.edu	hg19	12	118464813	118464813	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A783G	p.T261T	CACCACAGCCTAC	.	68.0	26.0	116.0	0.0	.	35	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120582745	120582745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCN1L1	NM_006836	exon40	c.C5137A	p.R1713S	CTGAGCGATCCAC	.	87.0	34.0	129.0	0.0	.	207	.	.	Atlas-SNP
SIRT4	23409	hgsc.bcm.edu	hg19	12	120750552	120750552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SIRT4	NM_012240	exon3	c.A791G	p.Q264R	CCTTGCAGGTATC	.	123.0	6.0	131.0	0.0	.	29	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23929049	23929049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SACS	NM_014363	exon8	c.G1702T	p.D568Y	CCCAGTCACAGCT	.	142.0	48.0	180.0	0.0	.	871	.	.	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	29600946	29600946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	MTUS2_ENST00000431530,right_upper_lobe,carcinoma,0,1	MTUS2	NM_001033602	exon1	c.A2141G	p.Q714R	ACCTGCAGAAGCC	.	34.0	2.0	26.0	0.0	.	279	.	.	Atlas-SNP
B3GALTL	145173	hgsc.bcm.edu	hg19	13	31821164	31821164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	B3GALTL	NM_194318	exon5	c.T275C	p.L92P	AGGAGCTCCCCAG	.	150.0	6.0	194.0	0.0	.	48	.	.	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32776158	32776158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FRY	NM_023037	exon30	c.T3827C	p.I1276T	ATGAAATCTCCAT	.	112.0	5.0	142.0	0.0	.	312	.	.	Atlas-SNP
BRCA2	675	hgsc.bcm.edu	hg19	13	32911166	32911166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRCA2	NM_000059	exon11	c.T2674C	p.F892L	TTTGTCTTCCAAG	.	148.0	6.0	160.0	0.0	.	812	.	.	Atlas-SNP
PDS5B	23047	hgsc.bcm.edu	hg19	13	33332689	33332689	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDS5B	NM_015032	exon28	c.T3207C	p.C1069C	TGTGTGTGATGTT	.	79.0	5.0	106.0	0.0	.	141	.	.	Atlas-SNP
COG6	57511	hgsc.bcm.edu	hg19	13	40251685	40251685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COG6	NM_001145079	exon5	c.T509C	p.L170P	GTCTTCTCCGAGG	.	91.0	4.0	112.0	0.0	.	49	.	.	Atlas-SNP
EPSTI1	94240	hgsc.bcm.edu	hg19	13	43543237	43543237	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPSTI1	NM_001002264	exon3	c.A324G	p.R108R	TAGCCGTCTGGGC	.	112.0	6.0	141.0	0.0	.	47	.	.	Atlas-SNP
RNASEH2B	79621	hgsc.bcm.edu	hg19	13	51523618	51523618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNASEH2B	NM_024570	exon9	c.T718C	p.S240P	TCAGCCTCATTGC	.	173.0	7.0	172.0	0.0	.	26	.	.	Atlas-SNP
UCHL3	7347	hgsc.bcm.edu	hg19	13	76143594	76143594	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UCHL3	NM_001270952	exon6	c.319-2A>G	.	TATTACAGGCCAT	.	78.0	4.0	95.0	0.0	.	9	.	.	Atlas-SNP
SCEL	8796	hgsc.bcm.edu	hg19	13	78216918	78216918	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCEL	NM_144777	exon32	c.T2025C	p.C675C	ACACTGTGAACCT	.	118.0	5.0	171.0	0.0	.	85	.	.	Atlas-SNP
DCT	1638	hgsc.bcm.edu	hg19	13	95121142	95121142	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DCT	NM_001129889	exon2	c.A453G	p.R151R	GTGTACTCTCTTC	.	131.0	6.0	180.0	0.0	.	186	.	.	Atlas-SNP
STK24	8428	hgsc.bcm.edu	hg19	13	99109511	99109511	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STK24	NM_003576	exon10	c.A1206G	p.E402E	CAGCTCTTCAATG	.	65.0	4.0	87.0	0.0	.	40	.	.	Atlas-SNP
LIG4	3981	hgsc.bcm.edu	hg19	13	108862228	108862228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LIG4	NM_206937	exon3	c.C1389A	p.D463E	TAAAATGTCCAAT	.	92.0	4.0	136.0	0.0	.	91	.	.	Atlas-SNP
CHD8	57680	hgsc.bcm.edu	hg19	14	21865984	21865984	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD8	NM_001170629	exon26	c.A5049G	p.E1683E	TTACCCTTCTACT	.	95.0	4.0	153.0	0.0	.	339	.	.	Atlas-SNP
MRPL52	122704	hgsc.bcm.edu	hg19	14	23302670	23302670	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MRPL52	NM_178336	exon4	c.A201G	p.K67K	AAGAAAAGCTGAA	.	83.0	4.0	134.0	0.0	.	7	.	.	Atlas-SNP
FOXA1	3169	hgsc.bcm.edu	hg19	14	38061910	38061910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FOXA1	NM_004496	exon2	c.T79C	p.S27P	CGGAGGAGTAGGC	.	75.0	5.0	98.0	0.0	.	56	.	.	Atlas-SNP
ATL1	51062	hgsc.bcm.edu	hg19	14	51094799	51094799	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATL1	NM_015915	exon12	c.A1170G	p.K390K	GACCAAACACCTG	.	92.0	4.0	107.0	0.0	.	46	.	.	Atlas-SNP
DLGAP5	9787	hgsc.bcm.edu	hg19	14	55647496	55647496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP5	NM_014750	exon6	c.T581C	p.V194A	TGCACAACTGTGG	.	124.0	49.0	172.0	0.0	.	84	.	.	Atlas-SNP
PCNXL4	64430	hgsc.bcm.edu	hg19	14	60581571	60581571	+	Silent	SNP	A	A	G	rs369124921		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_022495	exon2	c.A141G	p.G47G	CCTTGGAGGCTCA	.	95.0	5.0	112.0	0.0	.	.	.	.	Atlas-SNP
NUMB	8650	hgsc.bcm.edu	hg19	14	73822379	73822379	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUMB	NM_003744	exon4	c.A81G	p.T27T	TTCATCTGTCTGC	.	99.0	4.0	128.0	0.0	.	56	.	.	Atlas-SNP
ACOT4	122970	hgsc.bcm.edu	hg19	14	74058947	74058947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACOT4	NM_152331	exon1	c.A284G	p.K95R	TCCTGAAGCGGGA	.	85.0	4.0	143.0	0.0	.	25	.	.	Atlas-SNP
DNAL1	83544	hgsc.bcm.edu	hg19	14	74156191	74156191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAL1	NM_031427	exon7	c.A505G	p.R169G	ACCAAGAGAGTGC	.	142.0	6.0	235.0	0.0	.	16	.	.	Atlas-SNP
COQ6	51004	hgsc.bcm.edu	hg19	14	74422603	74422603	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COQ6	NM_182476	exon4	c.T453C	p.A151A	GCATGCTCTCACT	.	118.0	5.0	166.0	0.0	.	27	.	.	Atlas-SNP
AHSA1	10598	hgsc.bcm.edu	hg19	14	77935521	77935521	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	AHSA1,NS,carcinoma,0,1	AHSA1	NM_012111	exon9	c.C946A	p.R316R	CGGACGCGACAGG	.	159.0	0.0	292.0	0.0	.	24	.	.	Atlas-SNP
TDP1	55775	hgsc.bcm.edu	hg19	14	90499504	90499504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TDP1	NM_018319	exon16	c.A1699G	p.M567V	GAGCCAATGGCCA	.	94.0	5.0	163.0	0.0	.	47	.	.	Atlas-SNP
SERPINA3	12	hgsc.bcm.edu	hg19	14	95081176	95081176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SERPINA3	NM_001085	exon2	c.T398C	p.L133P	ATGAGCTGCAGCT	.	96.0	4.0	159.0	0.0	.	78	.	.	Atlas-SNP
AK7	122481	hgsc.bcm.edu	hg19	14	96944888	96944888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AK7	NM_152327	exon15	c.T1642C	p.Y548H	ACCCACTACAGCC	.	148.0	6.0	227.0	0.0	.	69	.	.	Atlas-SNP
EML1	2009	hgsc.bcm.edu	hg19	14	100375708	100375708	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	EML1,colon,carcinoma,+1,1	EML1	NM_001008707	exon12	c.G1188T	p.A396A	TGCTGCGGATTTC	.	214.0	0.0	335.0	0.0	.	97	.	.	Atlas-SNP
EML1	2009	hgsc.bcm.edu	hg19	14	100376661	100376661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EML1	NM_001008707	exon13	c.T1379C	p.I460T	GCAACATCTTAGT	.	74.0	4.0	121.0	0.0	.	97	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102514166	102514166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DYNC1H1	NM_001376	exon73	c.T13019C	p.I4340T	ACATGATCAGTAA	.	66.0	4.0	89.0	0.0	.	395	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105407396	105407396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHNAK2	NM_138420	exon7	c.A14392G	p.T4798A	GAACAGTCACCTG	.	112.0	5.0	171.0	0.0	.	719	.	.	Atlas-SNP
MKRN3	7681	hgsc.bcm.edu	hg19	15	23811295	23811295	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MKRN3	NM_005664	exon1	c.T366C	p.S122S	CCTTTCTGGTCGG	.	100.0	4.0	151.0	0.0	.	155	.	.	Atlas-SNP
APBA2	321	hgsc.bcm.edu	hg19	15	29393815	29393815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APBA2	NM_005503	exon9	c.A1352G	p.D451G	TGATGGACCACGC	.	130.0	6.0	182.0	0.0	.	132	.	.	Atlas-SNP
LTK	4058	hgsc.bcm.edu	hg19	15	41805238	41805238	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LTK	NM_001135685	exon2	c.C124A	p.R42R	GGTCCCGGGGGCT	.	70.0	4.0	64.0	0.0	.	117	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	41988795	41988795	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001080541	exon3	c.T1587C	p.G529G	AAATGGTCTTAGA	.	84.0	4.0	131.0	0.0	.	264	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	42035016	42035016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001164273	exon15	c.G4858A	p.D1620N	ATTTCTGACGTGG	.	48.0	20.0	70.0	0.0	.	264	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	42035364	42035364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001164273	exon15	c.A5206G	p.R1736G	AGCCAGAGACCAG	.	149.0	6.0	176.0	0.0	.	264	.	.	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42145939	42145939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPTBN5	NM_016642	exon58	c.A9716G	p.E3239G	CAGGCCTCCGTCT	.	64.0	5.0	92.0	0.0	.	171	.	.	Atlas-SNP
TUBGCP4	27229	hgsc.bcm.edu	hg19	15	43668306	43668306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TUBGCP4	NM_014444	exon2	c.A89G	p.D30G	CGCAGGACTTCCC	.	97.0	4.0	142.0	0.0	.	48	.	.	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	hg19	15	52720687	52720687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	MYO5A,right_upper_lobe,carcinoma,0,2	MYO5A	NM_000259	exon3	c.A218G	p.D73G	GTGAGGTCATTTT	.	248.0	10.0	401.0	2.0	.	145	.	.	Atlas-SNP
TCF12	6938	hgsc.bcm.edu	hg19	15	57484418	57484418	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCF12	NM_207036	exon7	c.A453G	p.K151K	AGGAAAACCTGGG	.	96.0	5.0	160.0	0.0	.	242	.	.	Atlas-SNP
ADAM10	102	hgsc.bcm.edu	hg19	15	58957384	58957384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAM10	NM_001110	exon5	c.A497G	p.K166R	CCGTATTTATGGG	.	97.0	4.0	134.0	0.0	.	59	.	.	Atlas-SNP
SLTM	79811	hgsc.bcm.edu	hg19	15	59204795	59204795	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLTM	NM_001013843	exon5	c.A528G	p.Q176Q	ACCTTCTTGAGCT	.	97.0	4.0	113.0	0.0	.	90	.	.	Atlas-SNP
SPG21	51324	hgsc.bcm.edu	hg19	15	65273320	65273320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPG21	NM_001127889	exon3	c.A107G	p.D36G	CCCGCGTCATAGA	.	97.0	6.0	118.0	0.0	.	29	.	.	Atlas-SNP
CLPX	10845	hgsc.bcm.edu	hg19	15	65449246	65449246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLPX	NM_006660	exon9	c.A1082G	p.D361G	ATCTTATCTACTT	.	90.0	5.0	153.0	0.0	.	49	.	.	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	hg19	15	65993392	65993392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DENND4A	NM_001144823	exon19	c.T2698C	p.S900P	TACCTGAGAGAGT	.	133.0	7.0	141.0	0.0	.	217	.	.	Atlas-SNP
ZWILCH	55055	hgsc.bcm.edu	hg19	15	66806411	66806411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZWILCH	NM_017975	exon3	c.T191C	p.V64A	TCATAGTGGAAAA	.	72.0	4.0	109.0	0.0	.	46	.	.	Atlas-SNP
UACA	55075	hgsc.bcm.edu	hg19	15	71055745	71055745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UACA	NM_018003	exon1	c.T2C	p.M1T	CTCTTCATGGCTA	.	90.0	4.0	129.0	0.0	.	235	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72244126	72244126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYO9A	NM_006901	exon15	c.A2294G	p.E765G	TACTTCTCTTCCT	.	146.0	6.0	215.0	0.0	.	203	.	.	Atlas-SNP
STOML1	9399	hgsc.bcm.edu	hg19	15	74281130	74281130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STOML1	NM_001256672	exon4	c.A404G	p.D135G	GCCCCGTCCTTAG	.	91.0	6.0	111.0	0.0	.	22	.	.	Atlas-SNP
NRG4	145957	hgsc.bcm.edu	hg19	15	76301620	76301620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NRG4	NM_138573	exon3	c.T25C	p.C9R	GACCACAGGGCTC	.	49.0	4.0	73.0	0.0	.	9	.	.	Atlas-SNP
HOMER2	9455	hgsc.bcm.edu	hg19	15	83523520	83523520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HOMER2	NM_199330	exon6	c.T560C	p.L187P	GTCTGCAGCTCGA	.	91.0	4.0	142.0	0.0	.	63	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86122651	86122651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKAP13	NM_007200	exon7	c.T1352C	p.V451A	ACTTGGTCATGGA	.	214.0	9.0	248.0	0.0	.	394	.	.	Atlas-SNP
TICRR	90381	hgsc.bcm.edu	hg19	15	90138760	90138760	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_152259	exon7	c.A1818G	p.K606K	GGAGAAAGGAATC	.	126.0	6.0	181.0	0.0	.	.	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99440006	99440006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IGF1R	NM_000875	exon4	c.A974G	p.E325G	CTTGTGAAGGTCC	.	89.0	4.0	94.0	0.0	.	147	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	341208	341208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AXIN1	NM_003502	exon9	c.T2276C	p.M759T	AGCTCCATGTCCG	.	95.0	4.0	121.0	0.0	.	290	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1245064	1245064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CACNA1H	NM_021098	exon3	c.A392G	p.E131G	GCTCCGAGCGCTG	.	94.0	4.0	130.0	0.0	.	317	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1252154	1252154	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CACNA1H_ENST00000358590,colon,carcinoma,0,2	CACNA1H	NM_021098	exon9	c.C1704T	p.D568D	CCCCGACGCAGAG	.	47.0	3.0	72.0	1.0	.	317	.	.	Atlas-SNP
ZNF200	7752	hgsc.bcm.edu	hg19	16	3273915	3273915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF200	NM_003454	exon5	c.T1165C	p.C389R	TCTTACAGGCTGA	.	108.0	5.0	141.0	0.0	.	36	.	.	Atlas-SNP
CORO7	79585	hgsc.bcm.edu	hg19	16	4410485	4410485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CORO7	NM_024535	exon20	c.T1982C	p.V661A	ACCCGCACACGCC	.	131.0	7.0	155.0	0.0	.	73	.	.	Atlas-SNP
TMEM186	25880	hgsc.bcm.edu	hg19	16	8890335	8890335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM186	NM_015421	exon2	c.G116A	p.S39N	GAACTGCTGCCCA	.	139.0	6.0	204.0	0.0	.	21	.	.	Atlas-SNP
ATF7IP2	80063	hgsc.bcm.edu	hg19	16	10525288	10525288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATF7IP2	NM_024997	exon3	c.T811C	p.S271P	TGGCAGTCATCAC	.	156.0	7.0	235.0	0.0	.	40	.	.	Atlas-SNP
MKL2	57496	hgsc.bcm.edu	hg19	16	14352004	14352004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MKL2	NM_014048	exon16	c.T2600C	p.L867P	ATATCCTCATTAA	.	124.0	5.0	151.0	0.0	.	103	.	.	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	hg19	16	16235094	16235094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCC1	NM_004996	exon31	c.A4552G	p.R1518G	CAGCAGAGAGGTC	.	117.0	5.0	106.0	0.0	.	156	.	.	Atlas-SNP
TBC1D10B	26000	hgsc.bcm.edu	hg19	16	30369601	30369601	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TBC1D10B	NM_015527	exon9	c.T2091C	p.T697T	CTCAGCAGTGACC	.	73.0	6.0	131.0	0.0	.	32	.	.	Atlas-SNP
ITGAL	3683	hgsc.bcm.edu	hg19	16	30521788	30521788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGAL	NM_002209	exon22	c.A2615G	p.H872R	CAGGCCACTCGGT	.	123.0	6.0	176.0	0.0	.	149	.	.	Atlas-SNP
ITGAL	3683	hgsc.bcm.edu	hg19	16	30529197	30529197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGAL	NM_002209	exon28	c.A3113G	p.E1038G	CTCTGGAGCTGGT	.	81.0	4.0	95.0	0.0	.	149	.	.	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	hg19	16	31382664	31382664	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGAX	NM_000887	exon16	c.T1851C	p.P617P	CAGACCTGTGCTC	.	94.0	4.0	110.0	0.0	.	198	.	.	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	hg19	16	31405596	31405596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGAD	NM_005353	exon2	c.A71G	p.E24G	TGGAGGAGCCTAC	.	114.0	5.0	170.0	0.0	.	154	.	.	Atlas-SNP
VPS35	55737	hgsc.bcm.edu	hg19	16	46696258	46696258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS35	NM_018206	exon15	c.T1964G	p.L655R	GCAGCAAGGGCAC	.	141.0	52.0	211.0	0.0	.	49	.	.	Atlas-SNP
MYLK3	91807	hgsc.bcm.edu	hg19	16	46781803	46781803	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYLK3	NM_182493	exon1	c.G303A	p.Q101Q	ATCCTGCTGCATG	.	122.0	5.0	150.0	0.0	.	82	.	.	Atlas-SNP
AARS	16	hgsc.bcm.edu	hg19	16	70302272	70302272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AARS	NM_001605	exon8	c.A973G	p.R325G	TCCGTCTCAACAC	.	69.0	5.0	100.0	0.0	.	62	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72829729	72829729	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFHX3	NM_006885	exon9	c.A6852G	p.R2284R	TATCACTCGGGTT	.	121.0	5.0	183.0	0.0	.	404	.	.	Atlas-SNP
CFDP1	10428	hgsc.bcm.edu	hg19	16	75339067	75339067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CFDP1	NM_006324	exon6	c.A664G	p.S222G	TGCCACTTGATCT	.	96.0	4.0	107.0	0.0	.	17	.	.	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	hg19	16	81241219	81241219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	PKD1L2_ENST00000525539,NS,carcinoma,0,2	PKD1L2	NM_001076780	exon5	c.G782A	p.S261N	CTCTCACTGGACA	.	47.0	4.0	81.0	0.0	.	361	.	.	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	hg19	16	81242150	81242150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,52	PKD1L2	NM_001076780	exon4	c.A706G	p.N236D	ACAGGTTTCCAAA	.	4.0	3.0	4.0	1.0	.	361	.	.	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84230305	84230305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAD2	NM_139174	exon10	c.T1825C	p.F609L	CGGGCCTTTCACC	.	100.0	4.0	92.0	0.0	.	46	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88497588	88497588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF469	NM_001127464	exon2	c.A3626G	p.D1209G	CCCCGGACAGCAC	.	93.0	4.0	156.0	0.0	.	121	.	.	Atlas-SNP
RABEP1	9135	hgsc.bcm.edu	hg19	17	5250197	5250197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABEP1	NM_004703	exon6	c.A761G	p.K254R	CTGAGAAACTGCG	.	53.0	4.0	71.0	0.0	.	59	.	.	Atlas-SNP
NUP88	4927	hgsc.bcm.edu	hg19	17	5291154	5291154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUP88	NM_002532	exon12	c.T1714C	p.F572L	CTCTGAACACCTG	.	89.0	4.0	158.0	0.0	.	47	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578503	7578503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	TP53_ENST00000545858,NS,carcinoma,0,5	TP53	NM_000546	exon5	c.G427A	p.V143M	GCTGCACAGGGCA	.	124.0	52.0	167.0	0.0	.	33396	.	.	Atlas-SNP
CHD3	1107	hgsc.bcm.edu	hg19	17	7793914	7793914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD3	NM_001005271	exon3	c.A416G	p.E139G	GTTCTGAGCGAGA	.	113.0	5.0	136.0	0.0	.	169	.	.	Atlas-SNP
WDR16	146845	hgsc.bcm.edu	hg19	17	9489226	9489226	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR16	NM_145054	exon2	c.C207T	p.C69C	CTCCTGCTTGGCC	.	93.0	4.0	139.0	0.0	.	67	.	.	Atlas-SNP
USP43	124739	hgsc.bcm.edu	hg19	17	9586141	9586141	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP43	NM_001267576	exon7	c.T1107C	p.A369A	TCTAGCTCATCCA	.	114.0	5.0	122.0	0.0	.	65	.	.	Atlas-SNP
USP43	124739	hgsc.bcm.edu	hg19	17	9604952	9604952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP43	NM_001267576	exon12	c.A1946G	p.D649G	CGCTGGACTTCCT	.	89.0	5.0	100.0	0.0	.	65	.	.	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	hg19	17	20109062	20109062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPECC1	NM_001033553	exon4	c.A1700G	p.E567G	CCACAGAGGCCAG	.	85.0	4.0	153.0	0.0	.	100	.	.	Atlas-SNP
KSR1	8844	hgsc.bcm.edu	hg19	17	25930890	25930890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KSR1	NM_014238	exon13	c.T1196C	p.L399P	CCCCGCTCCCTGA	.	104.0	5.0	153.0	0.0	.	151	.	.	Atlas-SNP
NOS2	4843	hgsc.bcm.edu	hg19	17	26092677	26092677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOS2	NM_000625	exon20	c.A2312G	p.E771G	AGGTGCTCCCCCG	.	158.0	7.0	186.0	0.0	.	113	.	.	Atlas-SNP
SUZ12	23512	hgsc.bcm.edu	hg19	17	30315475	30315475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUZ12	NM_015355	exon10	c.A1160G	p.Q387R	TCCATCAGGAAAA	.	183.0	9.0	217.0	0.0	.	61	.	.	Atlas-SNP
SLFN5	162394	hgsc.bcm.edu	hg19	17	33586258	33586258	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLFN5	NM_144975	exon2	c.T549C	p.Y183Y	TCAGTATCTGGAA	.	161.0	9.0	197.0	0.0	.	92	.	.	Atlas-SNP
SRCIN1	80725	hgsc.bcm.edu	hg19	17	36689629	36689629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRCIN1	NM_025248	exon19	c.A3455G	p.E1152G	GAGGTCTCATTCG	.	93.0	4.0	157.0	0.0	.	66	.	.	Atlas-SNP
SRCIN1	80725	hgsc.bcm.edu	hg19	17	36704821	36704821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRCIN1	NM_025248	exon17	c.A3242G	p.D1081G	TCCTCGTCATCCT	.	95.0	4.0	123.0	0.0	.	66	.	.	Atlas-SNP
MLLT6	4302	hgsc.bcm.edu	hg19	17	36861960	36861960	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLLT6	NM_005937	exon1	c.C75T	p.C25C	CTACTGCGATGGG	.	88.0	29.0	166.0	0.0	.	80	.	.	Atlas-SNP
KRT24	192666	hgsc.bcm.edu	hg19	17	38856499	38856499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRT24	NM_019016	exon4	c.A992G	p.E331G	TCAGCCTCTCGGC	.	144.0	6.0	203.0	0.0	.	60	.	.	Atlas-SNP
JUP	3728	hgsc.bcm.edu	hg19	17	39919572	39919572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JUP	NM_021991	exon8	c.A1160G	p.E387G	AGGCCCTCCTGGA	.	85.0	4.0	133.0	0.0	.	64	.	.	Atlas-SNP
IFI35	3430	hgsc.bcm.edu	hg19	17	41164212	41164212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFI35	NM_005533	exon2	c.A38G	p.Q13R	CCCTTCAGGAGGA	.	94.0	5.0	106.0	0.0	.	23	.	.	Atlas-SNP
TOM1L1	10040	hgsc.bcm.edu	hg19	17	53027460	53027460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOM1L1	NM_005486	exon14	c.A1343G	p.D448G	AGTTTGATCCCTT	.	99.0	4.0	147.0	0.0	.	33	.	.	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	hg19	17	62026109	62026109	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCN4A	NM_000334	exon16	c.G3006A	p.W1002X	GCAGGGCCAGCGC	.	90.0	4.0	80.0	0.0	.	205	.	.	Atlas-SNP
PSMD12	5718	hgsc.bcm.edu	hg19	17	65346351	65346351	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSMD12	NM_002816	exon4	c.A399G	p.E133E	CTTGCCTTCGGTA	.	154.0	47.0	137.0	0.0	.	32	.	.	Atlas-SNP
ARSG	22901	hgsc.bcm.edu	hg19	17	66391287	66391287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARSG	NM_001267727	exon10	c.G1165T	p.V389L	GATGGTGTGGACG	.	281.0	24.0	289.0	0.0	.	55	.	.	Atlas-SNP
TRIM65	201292	hgsc.bcm.edu	hg19	17	73887372	73887372	+	Missense_Mutation	SNP	G	G	A	rs144407004		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM65	NM_173547	exon6	c.C1042T	p.R348C	CCTGGCGCGACAG	.	115.0	35.0	131.0	0.0	.	23	.	G|1.000;A|0.000	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	hg19	17	74004439	74004439	+	Missense_Mutation	SNP	T	T	C	rs372600391	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EVPL	NM_001988	exon22	c.A4847G	p.E1616G	TTCGACTCCTCCT	.	89.0	4.0	88.0	0.0	.	155	.	.	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	hg19	17	74383417	74383417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPHK1	NM_182965	exon6	c.T1163C	p.L388P	TGCGCCTCTTCCT	.	169.0	9.0	169.0	0.0	.	24	.	.	Atlas-SNP
ST6GALNAC2	10610	hgsc.bcm.edu	hg19	17	74581809	74581809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ST6GALNAC2	NM_006456	exon1	c.T82C	p.F28L	CCGAGAAGTACAG	.	51.0	4.0	76.0	0.0	.	29	.	.	Atlas-SNP
ENGASE	64772	hgsc.bcm.edu	hg19	17	77075671	77075671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENGASE	NM_001042573	exon4	c.C517T	p.P173S	ATTCCCCCAGTGG	.	151.0	9.0	152.0	0.0	.	55	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	7017287	7017287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA1	NM_005559	exon20	c.A2798G	p.D933G	CACTGGTCACACT	.	92.0	5.0	183.0	0.0	.	458	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9257082	9257082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD12	NM_015208	exon9	c.A3817G	p.I1273V	GAGCGGATTAAAC	.	235.0	86.0	309.0	1.0	.	167	.	.	Atlas-SNP
CABYR	26256	hgsc.bcm.edu	hg19	18	21723346	21723346	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CABYR,NS,carcinoma,0,1	CABYR	NM_153769	exon3	c.A168G	p.K56K	TATAAAAGATCTG	.	72.0	4.0	57.0	0.0	.	51	.	.	Atlas-SNP
TCEB3B	51224	hgsc.bcm.edu	hg19	18	44560926	44560926	+	Nonsense_Mutation	SNP	A	A	T	rs373872961	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEB3B	NM_016427	exon1	c.T710A	p.L237X	GCACACAAGGGGC	.	224.0	100.0	255.0	1.0	.	141	.	.	Atlas-SNP
ONECUT2	9480	hgsc.bcm.edu	hg19	18	55102980	55102980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ONECUT2	NM_004852	exon1	c.T32C	p.L11P	GATGCCTCACCAA	.	100.0	4.0	197.0	0.0	.	42	.	.	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	hg19	18	59221661	59221661	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDH20	NM_031891	exon11	c.T2139C	p.P713P	CGTGCCTCAGACG	.	84.0	4.0	119.0	0.0	.	117	.	.	Atlas-SNP
TMX3	54495	hgsc.bcm.edu	hg19	18	66348255	66348255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMX3	NM_019022	exon14	c.T998C	p.V333A	AACTGGACCATGT	.	99.0	4.0	140.0	0.0	.	44	.	.	Atlas-SNP
FBXO15	201456	hgsc.bcm.edu	hg19	18	71749166	71749166	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO15	NM_001142958	exon9	c.T1259A	p.I420K	ACCTTTATACAGC	.	106.0	5.0	125.0	0.0	.	97	.	.	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	hg19	19	4216608	4216608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD24	NM_133475	exon18	c.T1451C	p.I484T	AGGTCATCCCTCT	.	114.0	5.0	143.0	0.0	.	180	.	.	Atlas-SNP
PLIN3	10226	hgsc.bcm.edu	hg19	19	4839252	4839252	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLIN3	NM_005817	exon8	c.A1257G	p.G419G	AAAGGGTCCCACG	.	115.0	7.0	206.0	0.0	.	36	.	.	Atlas-SNP
SLC25A23	79085	hgsc.bcm.edu	hg19	19	6454721	6454721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC25A23	NM_024103	exon5	c.A491G	p.D164G	CCAATGTCCAGGA	.	80.0	4.0	109.0	0.0	.	43	.	.	Atlas-SNP
SLC25A23	79085	hgsc.bcm.edu	hg19	19	6456486	6456486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC25A23	NM_024103	exon4	c.T428C	p.L143P	TGCAACAGGAAGT	.	122.0	5.0	136.0	0.0	.	43	.	.	Atlas-SNP
HNRNPM	4670	hgsc.bcm.edu	hg19	19	8533662	8533662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HNRNPM	NM_005968	exon9	c.A839G	p.E280G	AGGATGAGAGGGC	.	48.0	4.0	49.0	0.0	.	61	.	.	Atlas-SNP
PRAM1	84106	hgsc.bcm.edu	hg19	19	8564429	8564429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRAM1	NM_032152	exon2	c.T263C	p.V88A	TCAGTGACCTCAG	.	57.0	6.0	67.0	0.0	.	53	.	.	Atlas-SNP
MBD3L1	85509	hgsc.bcm.edu	hg19	19	8953814	8953814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MBD3L1	NM_145208	exon1	c.A460G	p.I154V	GAAGATATCAGGA	.	93.0	4.0	132.0	0.0	.	24	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9024995	9024995	+	Silent	SNP	G	G	T	rs375977247	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	MUC16_ENST00000397910,NS,carcinoma,0,1	MUC16	NM_024690	exon16	c.C36867A	p.P12289P	TTTCTCGGGCCTG	.	138.0	0.0	173.0	2.0	.	4315	.	.	Atlas-SNP
ZNF439	90594	hgsc.bcm.edu	hg19	19	11977010	11977010	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF439	NM_152262	exon1	c.G39A	p.E13E	ATGTGAGATGTTT	.	87.0	5.0	133.0	0.0	.	67	.	.	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15349696	15349696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRD4	NM_058243	exon19	c.A3878G	p.Q1293R	TGCTGTTGCTCCT	.	77.0	5.0	107.0	0.0	.	172	.	.	Atlas-SNP
OR10H2	26538	hgsc.bcm.edu	hg19	19	15838973	15838973	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	OR10H2,NS,carcinoma,0,1	OR10H2	NM_013939	exon1	c.G120A	p.L40L	GCTGCTGGGCAAC	.	307.0	0.0	391.0	1.0	.	59	.	.	Atlas-SNP
NWD1	284434	hgsc.bcm.edu	hg19	19	16860649	16860649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NWD1	NM_001007525	exon6	c.T1196C	p.L399P	ATGGGCTGCCCTT	.	69.0	4.0	100.0	0.0	.	303	.	.	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	hg19	19	17948866	17948866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	JAK3_ENST00000458235,bladder,carcinoma,0,2	JAK3	NM_000215	exon12	c.A1576G	p.N526D	CCAGGTTCTCATG	.	115.0	5.0	159.0	0.0	.	341	.	.	Atlas-SNP
PDE4C	5143	hgsc.bcm.edu	hg19	19	18331057	18331057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDE4C	NM_000923	exon8	c.T781C	p.Y261H	AGATGTACTCGGA	.	129.0	7.0	156.0	0.0	.	80	.	.	Atlas-SNP
COPE	11316	hgsc.bcm.edu	hg19	19	19021789	19021789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COPE	NM_007263	exon3	c.A281G	p.E94G	CGACTCTCGTGGG	.	123.0	6.0	157.0	0.0	.	26	.	.	Atlas-SNP
MAU2	23383	hgsc.bcm.edu	hg19	19	19455688	19455688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAU2	NM_015329	exon11	c.T1108C	p.S370P	CAGCAGTCCCCCC	.	104.0	6.0	126.0	0.0	.	38	.	.	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	hg19	19	21719985	21719985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF429	NM_001001415	exon4	c.C1130A	p.A377D	GCAAAGCTTTTAA	.	28.0	9.0	33.0	0.0	.	338	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22155940	22155940	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF208	NM_007153	exon4	c.T1896C	p.A632A	CTCTCCAGCATGA	.	83.0	30.0	69.0	0.0	.	817	.	.	Atlas-SNP
ZNF676	163223	hgsc.bcm.edu	hg19	19	22363757	22363757	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ZNF676,NS,carcinoma,0,1	ZNF676	NM_001001411	exon3	c.A762G	p.K254K	TTCACATTTGTAG	.	50.0	2.0	68.0	0.0	.	146	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22941279	22941279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ZNF99,NS,carcinoma,0,1	ZNF99	NM_001080409	exon4	c.G1432C	p.E478Q	GTTTCTCTCCAGT	.	19.0	3.0	32.0	1.0	.	273	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30935925	30935925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF536	NM_014717	exon2	c.C1456A	p.H486N	GACAAGCACTCCC	.	59.0	19.0	75.0	0.0	.	424	.	.	Atlas-SNP
ZNF507	22847	hgsc.bcm.edu	hg19	19	32873700	32873700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF507	NM_001136156	exon7	c.A2573G	p.E858G	GTTCAGAAAATGC	.	81.0	6.0	128.0	0.0	.	92	.	.	Atlas-SNP
FAM187B	148109	hgsc.bcm.edu	hg19	19	35715757	35715757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM187B	NM_152481	exon2	c.A1081G	p.R361G	TGCTTCTCCTGCC	.	125.0	5.0	157.0	0.0	.	28	.	.	Atlas-SNP
ZNF829	374899	hgsc.bcm.edu	hg19	19	37398844	37398844	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF829	NM_001171979	exon5	c.A549G	p.R183R	CAGGCCTCTAGTC	.	113.0	5.0	157.0	0.0	.	70	.	.	Atlas-SNP
SERTAD1	29950	hgsc.bcm.edu	hg19	19	40929172	40929172	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SERTAD1	NM_013376	exon2	c.T282C	p.P94P	GGCTGCAGGTGGG	.	148.0	6.0	182.0	0.0	.	18	.	.	Atlas-SNP
GSK3A	2931	hgsc.bcm.edu	hg19	19	42736820	42736820	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSK3A	NM_019884	exon9	c.A1113C	p.R371R	CGGCGTTCGAGAT	.	128.0	59.0	126.0	0.0	.	45	.	.	Atlas-SNP
ZNF221	7638	hgsc.bcm.edu	hg19	19	44471324	44471324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	ZNF221	NM_013359	exon6	c.G1670A	p.G557E	TCCACGGGGGAGA	.	87.0	0.0	115.0	0.0	.	59	.	.	Atlas-SNP
EXOC3L2	90332	hgsc.bcm.edu	hg19	19	45731493	45731493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOC3L2	NM_138568	exon3	c.T122C	p.L41P	TCCTGCAGCACAC	.	110.0	5.0	129.0	0.0	.	30	.	.	Atlas-SNP
DHX34	9704	hgsc.bcm.edu	hg19	19	47880440	47880440	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHX34	NM_014681	exon13	c.T2683A	p.C895S	GTGAACTGCGTCC	.	76.0	30.0	134.0	0.0	.	98	.	.	Atlas-SNP
KPTN	11133	hgsc.bcm.edu	hg19	19	47983122	47983122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KPTN	NM_007059	exon8	c.A785G	p.K262R	TCACCCTTGGCGG	.	88.0	4.0	100.0	0.0	.	34	.	.	Atlas-SNP
EHD2	30846	hgsc.bcm.edu	hg19	19	48229399	48229399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EHD2	NM_014601	exon4	c.T833C	p.L278P	AGGACCTCTTCCG	.	48.0	4.0	65.0	0.0	.	59	.	.	Atlas-SNP
PLEKHA4	57664	hgsc.bcm.edu	hg19	19	49342505	49342505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHA4	NM_020904	exon18	c.T1921C	p.S641P	CTCCCGAGTGTCC	.	116.0	5.0	176.0	0.0	.	70	.	.	Atlas-SNP
DHDH	27294	hgsc.bcm.edu	hg19	19	49442857	49442857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	DHDH,colon,carcinoma,0,1	DHDH	NM_014475	exon4	c.C518G	p.A173G	GGGGGGCCCTGCT	.	80.0	5.0	105.0	1.0	.	35	.	.	Atlas-SNP
EMC10	284361	hgsc.bcm.edu	hg19	19	50983931	50983931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_175063	exon5	c.G496T	p.G166W	CACCCCGGGGGCT	.	73.0	5.0	93.0	0.0	.	.	.	.	Atlas-SNP
ZNF615	284370	hgsc.bcm.edu	hg19	19	52497175	52497175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF615	NM_001199324	exon7	c.A1187G	p.N396S	AGACTGTTCTTCA	.	113.0	7.0	132.0	0.0	.	111	.	.	Atlas-SNP
ZNF480	147657	hgsc.bcm.edu	hg19	19	52803707	52803707	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF480	NM_144684	exon2	c.A42G	p.K14K	GAGGAAAGCAAAG	.	80.0	4.0	114.0	0.0	.	123	.	.	Atlas-SNP
ZNF528	84436	hgsc.bcm.edu	hg19	19	52918902	52918902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF528	NM_032423	exon7	c.A797G	p.E266G	CTGGAGAGAAGCC	.	91.0	6.0	112.0	0.0	.	95	.	.	Atlas-SNP
ZNF160	90338	hgsc.bcm.edu	hg19	19	53578336	53578336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF160	NM_001102603	exon5	c.A116G	p.E39G	TAGTTCTCCAACA	.	91.0	4.0	129.0	0.0	.	75	.	.	Atlas-SNP
TBC1D20	128637	hgsc.bcm.edu	hg19	20	421020	421020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TBC1D20	NM_144628	exon6	c.A640G	p.T214A	AGATGGTCCCTAC	.	82.0	5.0	154.0	0.0	.	34	.	.	Atlas-SNP
CHGB	1114	hgsc.bcm.edu	hg19	20	5903325	5903325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHGB	NM_001819	exon4	c.G535A	p.G179R	GAGCGAGGGGAAG	.	99.0	4.0	126.0	0.0	.	112	.	.	Atlas-SNP
CRNKL1	51340	hgsc.bcm.edu	hg19	20	20018161	20018161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CRNKL1	NM_016652	exon14	c.A2185G	p.T729A	ATTTAGTCAAACT	.	149.0	7.0	185.0	0.0	.	101	.	.	Atlas-SNP
PYGB	5834	hgsc.bcm.edu	hg19	20	25273090	25273090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PYGB	NM_002862	exon17	c.A2018G	p.E673G	GCACCGAGGCCTC	.	79.0	4.0	147.0	0.0	.	84	.	.	Atlas-SNP
SRC	6714	hgsc.bcm.edu	hg19	20	36022608	36022608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRC	NM_005417	exon7	c.T481C	p.S161P	CGGGAGTCAGAGC	.	49.0	4.0	70.0	0.0	.	52	.	.	Atlas-SNP
VSTM2L	128434	hgsc.bcm.edu	hg19	20	36560082	36560082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VSTM2L	NM_080607	exon2	c.A167G	p.E56G	CGGGCGAGGACGT	.	71.0	4.0	95.0	0.0	.	20	.	.	Atlas-SNP
PABPC1L	80336	hgsc.bcm.edu	hg19	20	43541304	43541304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PABPC1L	NM_001124756	exon2	c.A197G	p.E66G	CAGCGGAGCGGGC	.	122.0	5.0	132.0	0.0	.	59	.	.	Atlas-SNP
SNX21	90203	hgsc.bcm.edu	hg19	20	44463730	44463730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNX21	NM_033421	exon3	c.T422C	p.V141A	ACGTTGTCAAGGA	.	105.0	7.0	137.0	0.0	.	23	.	.	Atlas-SNP
ACOT8	10005	hgsc.bcm.edu	hg19	20	44477311	44477311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACOT8	NM_005469	exon3	c.A266G	p.D89G	TTCGGGTCCCCTG	.	56.0	5.0	74.0	0.0	.	29	.	.	Atlas-SNP
SLC2A4RG	56731	hgsc.bcm.edu	hg19	20	62373698	62373698	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC2A4RG	NM_020062	exon6	c.A690G	p.A230A	GCAGGCAGAGCCT	.	140.0	6.0	189.0	0.0	.	20	.	.	Atlas-SNP
USP16	10600	hgsc.bcm.edu	hg19	21	30409650	30409650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP16	NM_006447	exon6	c.A502G	p.S168G	AAAGAGAGTAAGA	.	75.0	5.0	98.0	0.0	.	65	.	.	Atlas-SNP
MRPS6	64968	hgsc.bcm.edu	hg19	21	35497667	35497667	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MRPS6	NM_032476	exon2	c.T72C	p.R24R	GAAACGTACGATA	.	87.0	4.0	103.0	0.0	.	18	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37603030	37603030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOPEY2	NM_005128	exon14	c.T1948C	p.S650P	ACAGCGTCAGGAG	.	137.0	6.0	162.0	0.0	.	184	.	.	Atlas-SNP
SLC37A1	54020	hgsc.bcm.edu	hg19	21	43999901	43999901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC37A1	NM_018964	exon20	c.A1577G	p.D526G	CGGGGGACCAAGT	.	60.0	4.0	100.0	0.0	.	48	.	.	Atlas-SNP
CBS	875	hgsc.bcm.edu	hg19	21	44479032	44479032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CBS	NM_000071	exon14	c.A1270G	p.T424A	GCACGGTCAGCGG	.	88.0	5.0	105.0	0.0	.	85	.	.	Atlas-SNP
C21orf33	8209	hgsc.bcm.edu	hg19	21	45556049	45556049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C21orf33	NM_198155	exon3	c.A302G	p.E101G	AAGGCGAGAGCAG	.	133.0	6.0	190.0	0.0	.	23	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47674393	47674393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MCM3AP	NM_003906	exon19	c.A4049G	p.H1350R	GGGAGGTGCTCAG	.	100.0	4.0	91.0	0.0	.	146	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26176036	26176036	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYO18B	NM_032608	exon9	c.A2082G	p.R694R	GATCCGAGCCACC	.	60.0	4.0	88.0	0.0	.	322	.	.	Atlas-SNP
DRG1	4733	hgsc.bcm.edu	hg19	22	31796695	31796695	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DRG1	NM_004147	exon2	c.T132C	p.T44T	CATTACTCCAAAG	.	87.0	4.0	113.0	0.0	.	28	.	.	Atlas-SNP
FBXO7	25793	hgsc.bcm.edu	hg19	22	32871071	32871071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO7	NM_012179	exon1	c.T82C	p.S28P	TTGCGCTCGCACC	.	97.0	4.0	178.0	0.0	.	131	.	.	Atlas-SNP
FBXO7	25793	hgsc.bcm.edu	hg19	22	32887083	32887083	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO7	NM_012179	exon6	c.A882G	p.V294V	AAATGTAGCCAAC	.	79.0	5.0	104.0	0.0	.	131	.	.	Atlas-SNP
SH3BP1	23616	hgsc.bcm.edu	hg19	22	38035826	38035826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH3BP1	NM_018957	exon1	c.A32G	p.Q11R	TGCGGCAGCTGGC	.	114.0	5.0	203.0	0.0	.	41	.	.	Atlas-SNP
RPL3	6122	hgsc.bcm.edu	hg19	22	39711388	39711388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPL3	NM_000967	exon5	c.G674A	p.G225D	CCTTTGCCCTTGG	.	148.0	6.0	271.0	0.0	.	29	.	.	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	hg19	22	40657900	40657900	+	Silent	SNP	A	A	G	rs376736908		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6B	NM_001024843	exon7	c.A288G	p.P96P	CTCTCCATCGCCA	.	181.0	69.0	248.0	0.0	.	195	.	.	Atlas-SNP
SMC1B	27127	hgsc.bcm.edu	hg19	22	45767392	45767392	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	SMC1B_ENST00000357450,rectum,carcinoma,0,2	SMC1B	NM_148674	exon14	c.C2272A	p.R758R	GTTGTCGTTCCTT	.	126.0	0.0	272.0	0.0	.	215	.	.	Atlas-SNP
PPP6R2	9701	hgsc.bcm.edu	hg19	22	50876270	50876270	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPP6R2	NM_001242899	exon16	c.1704-2A>G	.	TCTTGCAGTGCCC	.	69.0	4.0	208.0	0.0	.	71	.	.	Atlas-SNP
SBF1	6305	hgsc.bcm.edu	hg19	22	50893474	50893474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SBF1	NM_002972	exon34	c.T4652C	p.L1551P	GAGTCGAGCAGGA	.	79.0	4.0	191.0	0.0	.	211	.	.	Atlas-SNP
ARSE	415	hgsc.bcm.edu	hg19	X	2861192	2861192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARSE	NM_000047	exon8	c.T1040C	p.L347P	TAAATGAGGGTGC	.	80.0	4.0	107.0	0.0	.	43	.	.	Atlas-SNP
AMELX	265	hgsc.bcm.edu	hg19	X	11316394	11316394	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AMELX	NM_182680	exon5	c.A183G	p.P61P	AAGGCCACCGGTA	.	71.0	4.0	69.0	0.0	.	31	.	.	Atlas-SNP
FIGF	2277	hgsc.bcm.edu	hg19	X	15365316	15365316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FIGF	NM_004469	exon6	c.A908G	p.K303R	TTGTGCTTCTGGC	.	83.0	4.0	115.0	0.0	.	39	.	.	Atlas-SNP
MAP7D2	256714	hgsc.bcm.edu	hg19	X	20031688	20031688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP7D2	NM_001168465	exon13	c.A1805G	p.K602R	CCTACCTTCACTT	.	100.0	4.0	152.0	0.0	.	165	.	.	Atlas-SNP
PCYT1B	9468	hgsc.bcm.edu	hg19	X	24605386	24605386	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCYT1B	NM_004845	exon5	c.T537C	p.D179D	AACATCATCAGAG	.	59.0	4.0	69.0	0.0	.	88	.	.	Atlas-SNP
CASK	8573	hgsc.bcm.edu	hg19	X	41495868	41495868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CASK	NM_001126054	exon9	c.A878G	p.E293G	AGCTGCTCTACTG	.	116.0	5.0	136.0	0.0	.	93	.	.	Atlas-SNP
CXorf36	79742	hgsc.bcm.edu	hg19	X	45051113	45051113	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CXorf36	NM_176819	exon2	c.G381A	p.R127R	GATTCTCCTGTCT	.	84.0	4.0	121.0	0.0	.	53	.	.	Atlas-SNP
PHF16	9767	hgsc.bcm.edu	hg19	X	46884293	46884293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHF16	NM_001077445	exon5	c.T452C	p.L151P	AGGAACTCAATGA	.	67.0	4.0	92.0	0.0	.	72	.	.	Atlas-SNP
SYN1	6853	hgsc.bcm.edu	hg19	X	47466556	47466556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYN1	NM_006950	exon2	c.A419G	p.D140G	TTAATGTCAATTT	.	99.0	5.0	106.0	0.0	.	84	.	.	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	hg19	X	48672876	48672876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HDAC6	NM_006044	exon11	c.A836G	p.E279G	GCTACGAGCAGGG	.	55.0	4.0	64.0	0.0	.	111	.	.	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	hg19	X	48675759	48675759	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HDAC6	NM_006044	exon20	c.T1818C	p.R606R	GGTGCGTCCCCCA	.	103.0	5.0	108.0	0.0	.	111	.	.	Atlas-SNP
PPP1R3F	89801	hgsc.bcm.edu	hg19	X	49138448	49138448	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPP1R3F	NM_033215	exon3	c.G1065A	p.E355E	AGCAGAGCATCCT	.	71.0	4.0	93.0	0.0	.	56	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53630379	53630379	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HUWE1	NM_031407	exon27	c.T2826C	p.C942C	CAGGGAACAGTAT	.	94.0	4.0	125.0	0.0	.	724	.	.	Atlas-SNP
DGAT2L6	347516	hgsc.bcm.edu	hg19	X	69424364	69424364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DGAT2L6	NM_198512	exon6	c.T857C	p.V286A	CCACTGTTGGTGA	.	83.0	4.0	134.0	0.0	.	40	.	.	Atlas-SNP
TEX11	56159	hgsc.bcm.edu	hg19	X	70072999	70072999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TEX11	NM_001003811	exon8	c.T455C	p.L152P	TGCTCCAGACTCT	.	62.0	4.0	98.0	0.0	.	132	.	.	Atlas-SNP
OGT	8473	hgsc.bcm.edu	hg19	X	70775862	70775862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OGT	NM_181672	exon8	c.A983G	p.D328G	ATGCAGACTCTCT	.	119.0	5.0	162.0	0.0	.	207	.	.	Atlas-SNP
NHSL2	340527	hgsc.bcm.edu	hg19	X	71359404	71359404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NHSL2	NM_001013627	exon6	c.T2006C	p.V669A	CCCAAGTTCAGGG	.	136.0	6.0	159.0	0.0	.	148	.	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	hg19	X	73960376	73960376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA2022	NM_001008537	exon3	c.A4016G	p.E1339G	AGGGGCTCTATGG	.	113.0	5.0	144.0	0.0	.	262	.	.	Atlas-SNP
SH3BGRL	6451	hgsc.bcm.edu	hg19	X	80532637	80532637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH3BGRL	NM_003022	exon2	c.C200T	p.P67L	TGCCACCTCAGAT	.	92.0	4.0	141.0	0.0	.	23	.	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	hg19	X	101395774	101395774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.A530G	p.D177G	CCGTTGTCCCCTT	.	170.0	12.0	108.0	0.0	.	27	.	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	hg19	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	TGTCCCCTTGGGC	.	164.0	23.0	108.0	0.0	.	27	.	.	Atlas-SNP
GPRASP2	114928	hgsc.bcm.edu	hg19	X	101971961	101971961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPRASP2	NM_138437	exon4	c.G2164A	p.G722R	ATGTCCGGGTTTC	.	167.0	138.0	215.0	0.0	.	89	.	.	Atlas-SNP
NUP62CL	54830	hgsc.bcm.edu	hg19	X	106396417	106396417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUP62CL	NM_017681	exon7	c.A515G	p.E172G	TGCTCCTCATCTG	.	139.0	6.0	202.0	0.0	.	10	.	.	Atlas-SNP
NUP62CL	54830	hgsc.bcm.edu	hg19	X	106410964	106410964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUP62CL	NM_017681	exon4	c.A109G	p.T37A	TGATTGTGGTAGT	.	96.0	4.0	142.0	0.0	.	10	.	.	Atlas-SNP
CAPN6	827	hgsc.bcm.edu	hg19	X	110496327	110496327	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAPN6	NM_014289	exon4	c.T415C	p.L139L	GCAACAAGTCATC	.	86.0	4.0	111.0	0.0	.	120	.	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118221022	118221022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1210	NM_020721	exon11	c.A4171G	p.S1391G	AATTGCTCTCAAA	.	71.0	4.0	79.0	0.0	.	171	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123195126	123195126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STAG2	NM_001042749	exon16	c.A1469G	p.E490G	CTACTGAGCTGCT	.	87.0	5.0	114.0	0.0	.	309	.	.	Atlas-SNP
FHL1	2273	hgsc.bcm.edu	hg19	X	135288588	135288588	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FHL1	NM_001159701	exon2	c.C84T	p.G28G	GGTGGGCACCATG	.	119.0	7.0	161.0	0.0	.	114	.	.	Atlas-SNP
L1CAM	3897	hgsc.bcm.edu	hg19	X	153132510	153132510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	L1CAM	NM_000425	exon17	c.A2207G	p.K736R	CTCACCTTCCACG	.	157.0	7.0	202.0	0.0	.	189	.	.	Atlas-SNP
ZFY	7544	hgsc.bcm.edu	hg19	Y	2846064	2846064	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFY	NM_003411	exon7	c.C1165T	p.L389L	GGCAGACTGGCTA	.	99.0	4.0	152.0	0.0	.	20	.	.	Atlas-SNP
KDM5D	8284	hgsc.bcm.edu	hg19	Y	21870223	21870223	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KDM5D	NM_001146705	exon23	c.A3261G	p.R1087R	TAGCTGTCTCAGC	.	90.0	4.0	121.0	0.0	.	40	.	.	Atlas-SNP
F8A2	474383	hgsc.bcm.edu	hg19	X	154687164	154687164	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001007523	exon1	c.1099delT	p.S367fs	.	.	388.0	28.0	488.0	0.0	.	.	.	.	Atlas-INDEL
SRCAP	10847	hgsc.bcm.edu	hg19	16	30745026	30745026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRCAP	NM_006662	exon29	c.6400delG	p.V2134fs	.	.	171.0	13.0	155.0	0.0	.	298	.	.	Atlas-INDEL
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77636737	77636737	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	MYCBP2_ENST00000407578,NS,carcinoma,0,2	MYCBP2	NM_015057	exon74	c.12769delC	p.Q4257fs	.	.	173.0	13.0	217.0	0.0	.	1029	.	.	Atlas-INDEL
SLC28A1	9154	hgsc.bcm.edu	hg19	15	85431063	85431063	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC28A1	NM_201651	exon3	c.71delT	p.M24fs	.	.	156.0	11.0	231.0	0.0	.	118	.	.	Atlas-INDEL
NCKAP1	10787	hgsc.bcm.edu	hg19	2	183822266	183822266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCKAP1	NM_205842	exon20	c.1959delG	p.K653fs	.	.	190.0	14.0	243.0	0.0	.	105	.	.	Atlas-INDEL
IL13RA2	3598	hgsc.bcm.edu	hg19	X	114248379	114248379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL13RA2	NM_000640	exon5	c.475delC	p.P159fs	.	.	199.0	12.0	275.0	0.0	.	66	.	.	Atlas-INDEL
TFDP1	7027	hgsc.bcm.edu	hg19	13	114240158	114240158	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFDP1	NM_007111	exon2	c.5delC	p.A2fs	.	.	123.0	12.0	167.0	0.0	.	70	.	.	Atlas-INDEL
PRMT5	10419	hgsc.bcm.edu	hg19	14	23398414	23398414	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRMT5	NM_001039619	exon1	c.22delA	p.T8fs	.	.	180.0	12.0	188.0	0.0	.	101	.	.	Atlas-INDEL
CREG2	200407	hgsc.bcm.edu	hg19	2	102000039	102000039	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CREG2	NM_153836	exon2	c.568delA	p.M190fs	.	.	89.0	10.0	130.0	0.0	.	21	.	.	Atlas-INDEL
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48457527	48457527	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLXNB1	NM_001130082	exon18	c.3531delC	p.G1177fs	.	.	182.0	13.0	260.0	0.0	.	150	.	.	Atlas-INDEL
CDHR3	222256	hgsc.bcm.edu	hg19	7	105658335	105658335	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDHR3	NM_152750	exon12	c.1469delT	p.L490fs	.	.	135.0	11.0	141.0	0.0	.	153	.	.	Atlas-INDEL
TNXB	7148	hgsc.bcm.edu	hg19	6	32038147	32038147	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNXB	NM_019105	exon14	c.5036delA	p.E1679fs	.	.	179.0	11.0	186.0	0.0	.	553	.	.	Atlas-INDEL
SETD6	79918	hgsc.bcm.edu	hg19	16	58550759	58550759	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SETD6	NM_001160305	exon5	c.718delT	p.S240fs	.	.	164.0	10.0	197.0	0.0	.	27	.	.	Atlas-INDEL
NASP	4678	hgsc.bcm.edu	hg19	1	46073041	46073041	+	Frame_Shift_Del	DEL	A	A	-	rs35351400		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NASP	NM_002482	exon6	c.457delG	p.E153fs	.	.	146.0	10.0	165.0	0.0	.	77	.	.	Atlas-INDEL
OR4A15	81328	hgsc.bcm.edu	hg19	11	55135387	55135387	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR4A15	NM_001005275	exon1	c.27delA	p.K9fs	.	.	156.0	10.0	188.0	0.0	.	161	.	.	Atlas-INDEL
FANCE	2178	hgsc.bcm.edu	hg19	6	35425715	35425715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,2	FANCE	NM_021922	exon4	c.922delG	p.A308fs	.	.	150.0	10.0	173.0	0.0	.	45	.	.	Atlas-INDEL
MUC13	56667	hgsc.bcm.edu	hg19	3	124646629	124646629	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC13	NM_033049	exon2	c.262delA	p.I88X	.	.	244.0	15.0	257.0	0.0	.	57	.	.	Atlas-INDEL
SLC4A7	9497	hgsc.bcm.edu	hg19	3	27439766	27439766	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC4A7	NM_003615	exon17	c.2480delG	p.W827fs	.	.	183.0	11.0	241.0	0.0	.	119	.	.	Atlas-INDEL
RFC1	5981	hgsc.bcm.edu	hg19	4	39322284	39322284	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC1	NM_002913	exon9	c.815delC	p.T272fs	.	.	150.0	10.0	191.0	0.0	.	114	.	.	Atlas-INDEL
SLC30A1	7779	hgsc.bcm.edu	hg19	1	211751711	211751711	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC30A1	NM_021194	exon1	c.245delC	p.A82fs	.	.	166.0	10.0	152.0	0.0	.	27	.	.	Atlas-INDEL
MLL	4297	hgsc.bcm.edu	hg19	11	118342966	118342966	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL	NM_001197104	exon3	c.1091delC	p.S364X	.	.	249.0	15.0	346.0	0.0	.	548	.	.	Atlas-INDEL
ZFP57	346171	hgsc.bcm.edu	hg19	6	29640726	29640726	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFP57	NM_001109809	exon4	c.1163delA	p.H388fs	.	.	160.0	11.0	232.0	0.0	.	80	.	.	Atlas-INDEL
RAB10	10890	hgsc.bcm.edu	hg19	2	26350743	26350743	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAB10	NM_016131	exon5	c.441delG	p.R147fs	.	.	166.0	11.0	199.0	0.0	.	14	.	.	Atlas-INDEL
AKNAD1	254268	hgsc.bcm.edu	hg19	1	109395035	109395035	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	AKNAD1	NM_152763	exon2	c.253delG	p.D85fs	.	.	198.0	13.0	271.0	0.0	.	83	.	.	Atlas-INDEL
KIAA0319	9856	hgsc.bcm.edu	hg19	6	24596508	24596508	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA0319	NM_001168375	exon3	c.395delA	p.D132fs	.	.	124.0	10.0	140.0	0.0	.	117	.	.	Atlas-INDEL
APBB1IP	54518	hgsc.bcm.edu	hg19	10	26802473	26802473	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APBB1IP	NM_019043	exon8	c.696delG	p.R232fs	.	.	156.0	10.0	270.0	0.0	.	117	.	.	Atlas-INDEL
FYN	2534	hgsc.bcm.edu	hg19	6	112021336	112021336	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FYN	NM_002037	exon9	c.834delA	p.G278fs	.	.	169.0	12.0	193.0	0.0	.	108	.	.	Atlas-INDEL
ERAL1	26284	hgsc.bcm.edu	hg19	17	27182148	27182148	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ERAL1,NS,carcinoma,0,1	ERAL1	NM_005702	exon1	c.95delC	p.P32fs	.	.	175.0	13.0	214.0	0.0	.	28	.	.	Atlas-INDEL
RNF111	54778	hgsc.bcm.edu	hg19	15	59383348	59383348	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNF111	NM_001270528	exon12	c.2760delC	p.Y920X	.	.	204.0	13.0	248.0	0.0	.	179	.	.	Atlas-INDEL
EXOSC9	5393	hgsc.bcm.edu	hg19	4	122723068	122723068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOSC9	NM_001034194	exon2	c.152delG	p.G51fs	.	.	180.0	11.0	293.0	0.0	.	51	.	.	Atlas-INDEL
COL11A1	1301	hgsc.bcm.edu	hg19	1	103461421	103461421	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL11A1	NM_080629	exon28	c.2376delG	p.K792fs	.	.	163.0	10.0	232.0	0.0	.	972	.	.	Atlas-INDEL
TUBA3D	113457	hgsc.bcm.edu	hg19	2	132238225	132238225	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TUBA3D	NM_080386	exon4	c.958delA	p.R320fs	.	.	243.0	15.0	418.0	0.0	.	60	.	.	Atlas-INDEL
C12orf40	283461	hgsc.bcm.edu	hg19	12	40041671	40041671	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C12orf40	NM_001031748	exon6	c.461delC	p.S154fs	.	.	221.0	15.0	310.0	0.0	.	118	.	.	Atlas-INDEL
CIC	23152	hgsc.bcm.edu	hg19	19	42794469	42794469	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CIC	NM_015125	exon10	c.1548delG	p.G516fs	.	.	222.0	14.0	270.0	0.0	.	249	.	.	Atlas-INDEL
VPS37C	55048	hgsc.bcm.edu	hg19	11	60899827	60899827	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS37C	NM_017966	exon5	c.534delG	p.P178fs	.	.	196.0	12.0	206.0	0.0	.	30	.	.	Atlas-INDEL
WDR78	79819	hgsc.bcm.edu	hg19	1	67292680	67292680	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR78	NM_024763	exon15	c.2163delA	p.L721fs	.	.	360.0	24.0	461.0	0.0	.	102	.	.	Atlas-INDEL
ZNF200	7752	hgsc.bcm.edu	hg19	16	3274133	3274133	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF200	NM_003454	exon5	c.948delC	p.N316fs	.	.	175.0	11.0	221.0	0.0	.	36	.	.	Atlas-INDEL
COPS2	9318	hgsc.bcm.edu	hg19	15	49436467	49436467	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COPS2	NM_004236	exon3	c.204delA	p.G68fs	.	.	149.0	12.0	238.0	0.0	.	41	.	.	Atlas-INDEL
BIN1	274	hgsc.bcm.edu	hg19	2	127821169	127821169	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BIN1	NM_139343	exon9	c.753delC	p.N251fs	.	.	155.0	10.0	198.0	0.0	.	85	.	.	Atlas-INDEL
XCR1	2829	hgsc.bcm.edu	hg19	3	46062566	46062566	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XCR1	NM_001024644	exon2	c.875delT	p.V292fs	.	.	263.0	18.0	428.0	0.0	.	51	.	.	Atlas-INDEL
DNAJC7	7266	hgsc.bcm.edu	hg19	17	40141477	40141477	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJC7	NM_003315	exon7	c.699delC	p.F233fs	.	.	170.0	11.0	240.0	0.0	.	51	.	.	Atlas-INDEL
NPHP1	4867	hgsc.bcm.edu	hg19	2	110881425	110881425	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPHP1	NM_000272	exon20	c.2146delG	p.D716fs	.	.	157.0	10.0	248.0	0.0	.	68	.	.	Atlas-INDEL
CCNT2	905	hgsc.bcm.edu	hg19	2	135712007	135712007	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCNT2	NM_058241	exon9	c.1981delG	p.V661fs	.	.	207.0	14.0	263.0	0.0	.	98	.	.	Atlas-INDEL
XDH	7498	hgsc.bcm.edu	hg19	2	31588960	31588960	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XDH	NM_000379	exon22	c.2339delT	p.M780fs	.	.	134.0	10.0	181.0	0.0	.	191	.	.	Atlas-INDEL
RAD50	10111	hgsc.bcm.edu	hg19	5	131977933	131977933	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAD50	NM_005732	exon25	c.3815delA	p.D1272fs	.	.	185.0	12.0	270.0	0.0	.	246	.	.	Atlas-INDEL
PDIA4	9601	hgsc.bcm.edu	hg19	7	148702444	148702444	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDIA4	NM_004911	exon9	c.1312delG	p.V438fs	.	.	154.0	10.0	145.0	0.0	.	57	.	.	Atlas-INDEL
HACE1	57531	hgsc.bcm.edu	hg19	6	105198277	105198277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HACE1	NM_020771	exon20	c.2283delA	p.L761fs	.	.	146.0	10.0	245.0	0.0	.	96	.	.	Atlas-INDEL
USP9X	8239	hgsc.bcm.edu	hg19	X	41043827	41043827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP9X	NM_001039591	exon23	c.3456delT	p.L1152fs	.	.	143.0	10.0	160.0	0.0	.	385	.	.	Atlas-INDEL
ARAP2	116984	hgsc.bcm.edu	hg19	4	36148950	36148950	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARAP2	NM_015230	exon19	c.3232delC	p.L1078fs	.	.	225.0	16.0	252.0	0.0	.	210	.	.	Atlas-INDEL
ZNF331	55422	hgsc.bcm.edu	hg19	19	54079990	54079990	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF331	NM_001253801	exon5	c.175delG	p.E59fs	.	.	180.0	13.0	221.0	0.0	.	66	.	.	Atlas-INDEL
GREB1L	80000	hgsc.bcm.edu	hg19	18	19100709	19100709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GREB1L	NM_001142966	exon32	c.5532delG	p.V1844fs	.	.	171.0	12.0	225.0	0.0	.	69	.	.	Atlas-INDEL
KIF21B	23046	hgsc.bcm.edu	hg19	1	200974546	200974546	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF21B	NM_017596	exon5	c.623delC	p.A208fs	.	.	212.0	14.0	137.0	0.0	.	208	.	.	Atlas-INDEL
CACUL1	143384	hgsc.bcm.edu	hg19	10	120514243	120514243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_153810	exon1	c.33delC	p.G11fs	.	.	285.0	19.0	477.0	0.0	.	.	.	.	Atlas-INDEL
EPS8L2	64787	hgsc.bcm.edu	hg19	11	721655	721655	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	EPS8L2	NM_022772	exon10	c.858delG	p.R286fs	.	.	248.0	15.0	312.0	0.0	.	42	.	.	Atlas-INDEL
TTN	7273	hgsc.bcm.edu	hg19	2	179485563	179485563	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTN	NM_001267550	exon247	c.45775delG	p.D15259fs	.	.	154.0	10.0	244.0	0.0	.	18412	.	.	Atlas-INDEL
GLS	2744	hgsc.bcm.edu	hg19	2	191769844	191769844	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GLS	NM_001256310	exon6	c.929delG	p.G310fs	.	.	147.0	11.0	222.0	0.0	.	47	.	.	Atlas-INDEL
RPL23	9349	hgsc.bcm.edu	hg19	17	37008859	37008859	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPL23	NM_000978	exon3	c.225delG	p.K75fs	.	.	211.0	14.0	292.0	0.0	.	7	.	.	Atlas-INDEL
SKP2	6502	hgsc.bcm.edu	hg19	5	36170455	36170455	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SKP2	NM_032637	exon6	c.680delC	p.A227fs	.	.	195.0	12.0	239.0	0.0	.	70	.	.	Atlas-INDEL
TMEM232	642987	hgsc.bcm.edu	hg19	5	109973983	109973983	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM232	NM_001039763	exon5	c.418delG	p.V140fs	.	.	303.0	19.0	365.0	0.0	.	57	.	.	Atlas-INDEL
T	6862	hgsc.bcm.edu	hg19	6	166580213	166580213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	T	NM_001270484	exon3	c.339delC	p.G113fs	.	.	143.0	10.0	188.0	0.0	.	77	.	.	Atlas-INDEL
FSD1L	83856	hgsc.bcm.edu	hg19	9	108234293	108234293	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FSD1L	NM_031919	exon4	c.351delC	p.H117fs	.	.	232.0	15.0	288.0	0.0	.	31	.	.	Atlas-INDEL
MBTPS1	8720	hgsc.bcm.edu	hg19	16	84118656	84118656	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MBTPS1	NM_003791	exon10	c.1219delT	p.C407fs	.	.	212.0	13.0	301.0	0.0	.	85	.	.	Atlas-INDEL
CC2D1B	200014	hgsc.bcm.edu	hg19	1	52822693	52822693	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CC2D1B	NM_032449	exon16	c.1877delT	p.M626fs	.	.	214.0	13.0	282.0	0.0	.	73	.	.	Atlas-INDEL
MAB21L2	10586	hgsc.bcm.edu	hg19	4	151505172	151505172	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAB21L2	NM_006439	exon1	c.990delG	p.K330fs	.	.	129.0	10.0	183.0	0.0	.	53	.	.	Atlas-INDEL
RRP7A	27341	hgsc.bcm.edu	hg19	22	42911202	42911202	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RRP7A	NM_015703	exon4	c.416delT	p.L139fs	.	.	168.0	12.0	225.0	0.0	.	25	.	.	Atlas-INDEL
GPBP1L1	60313	hgsc.bcm.edu	hg19	1	46120968	46120968	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPBP1L1	NM_021639	exon5	c.85delC	p.H29fs	.	.	238.0	15.0	325.0	0.0	.	43	.	.	Atlas-INDEL
ABCB7	22	hgsc.bcm.edu	hg19	X	74282215	74282215	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCB7	NM_004299	exon14	c.1887delA	p.P629fs	.	.	179.0	13.0	225.0	0.0	.	69	.	.	Atlas-INDEL
ZCCHC6	79670	hgsc.bcm.edu	hg19	9	88960648	88960648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC6	NM_024617	exon4	c.756delA	p.L252fs	.	.	169.0	11.0	255.0	0.0	.	105	.	.	Atlas-INDEL
PBX4	80714	hgsc.bcm.edu	hg19	19	19681606	19681606	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PBX4	NM_025245	exon3	c.231delT	p.P77fs	.	.	136.0	11.0	198.0	0.0	.	34	.	.	Atlas-INDEL
NR1H4	9971	hgsc.bcm.edu	hg19	12	100904639	100904639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NR1H4	NM_001206992	exon2	c.192delT	p.F64fs	.	.	258.0	17.0	403.0	0.0	.	145	.	.	Atlas-INDEL
HYLS1	219844	hgsc.bcm.edu	hg19	11	125769979	125769979	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HYLS1	NM_001134793	exon3	c.715delT	p.W239fs	.	.	128.0	10.0	181.0	0.0	.	25	.	.	Atlas-INDEL
LLGL2	3993	hgsc.bcm.edu	hg19	17	73560534	73560534	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LLGL2	NM_001015002	exon10	c.981delC	p.D327fs	.	.	182.0	11.0	180.0	0.0	.	155	.	.	Atlas-INDEL
RBFOX1	54715	hgsc.bcm.edu	hg19	16	7568215	7568215	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBFOX1	NM_145891	exon2	c.153delT	p.A51fs	.	.	160.0	11.0	194.0	0.0	.	341	.	.	Atlas-INDEL
FBP1	2203	hgsc.bcm.edu	hg19	9	97369188	97369188	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBP1	NM_000507	exon5	c.615delG	p.K205fs	.	.	216.0	15.0	326.0	0.0	.	13	.	.	Atlas-INDEL
MEIS1	4211	hgsc.bcm.edu	hg19	2	66667704	66667704	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MEIS1	NM_002398	exon4	c.391delG	p.E131fs	.	.	256.0	18.0	345.0	0.0	.	52	.	.	Atlas-INDEL
PIK3R3	8503	hgsc.bcm.edu	hg19	1	46531807	46531807	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3R3	NM_003629	exon5	c.541delC	p.L181fs	.	.	187.0	14.0	259.0	0.0	.	41	.	.	Atlas-INDEL
CALML6	163688	hgsc.bcm.edu	hg19	1	1848432	1848432	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CALML6	NM_138705	exon5	c.417delA	p.A139fs	.	.	126.0	10.0	146.0	0.0	.	18	.	.	Atlas-INDEL
CLCA1	1179	hgsc.bcm.edu	hg19	1	86957003	86957003	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLCA1	NM_001285	exon9	c.1412delC	p.A471fs	.	.	169.0	13.0	242.0	0.0	.	109	.	.	Atlas-INDEL
ZNF200	7752	hgsc.bcm.edu	hg19	16	3283724	3283724	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF200	NM_003454	exon2	c.33delA	p.P11fs	.	.	156.0	12.0	234.0	0.0	.	36	.	.	Atlas-INDEL
YAP1	10413	hgsc.bcm.edu	hg19	11	102094405	102094405	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	YAP1	NM_001130145	exon7	c.1084delC	p.Q362fs	.	.	165.0	11.0	247.0	0.0	.	45	.	.	Atlas-INDEL
ENO1	2023	hgsc.bcm.edu	hg19	1	8926380	8926380	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENO1	NM_001428	exon7	c.626delA	p.D209fs	.	.	118.0	10.0	190.0	0.0	.	38	.	.	Atlas-INDEL
NHSL1	57224	hgsc.bcm.edu	hg19	6	138817355	138817355	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NHSL1	NM_020464	exon3	c.355+2G>-	.	.	.	175.0	11.0	181.0	0.0	.	99	.	.	Atlas-INDEL
APOH	350	hgsc.bcm.edu	hg19	17	64212962	64212962	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOH	NM_000042	exon6	c.729delG	p.P243fs	.	.	199.0	12.0	196.0	0.0	.	45	.	.	Atlas-INDEL
SBDS	51119	hgsc.bcm.edu	hg19	7	66458407	66458407	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SBDS	NM_016038	exon4	c.259-2T>-	.	.	.	172.0	11.0	140.0	0.0	.	20	.	.	Atlas-INDEL
CLSTN3	9746	hgsc.bcm.edu	hg19	12	7301639	7301639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CLSTN3,NS,adenocarcinoma,0,1	CLSTN3	NM_014718	exon13	c.1918delG	p.A640fs	.	.	141.0	11.0	163.0	0.0	.	84	.	.	Atlas-INDEL
FAM120B	84498	hgsc.bcm.edu	hg19	6	170639584	170639584	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM120B	NM_032448	exon4	c.1962delT	p.P654fs	.	.	222.0	14.0	342.0	0.0	.	108	.	.	Atlas-INDEL
CFDP1	10428	hgsc.bcm.edu	hg19	16	75445767	75445767	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CFDP1	NM_006324	exon4	c.487delG	p.V163fs	.	.	140.0	10.0	205.0	0.0	.	17	.	.	Atlas-INDEL
DNAH5	1767	hgsc.bcm.edu	hg19	5	13864702	13864702	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH5	NM_001369	exon28	c.4401delG	p.L1467fs	.	.	152.0	10.0	215.0	0.0	.	868	.	.	Atlas-INDEL
TMEM132C	92293	hgsc.bcm.edu	hg19	12	129178468	129178468	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM132C	NM_001136103	exon6	c.1543delG	p.A515fs	.	.	216.0	14.0	254.0	0.0	.	142	.	.	Atlas-INDEL
MLL2	8085	hgsc.bcm.edu	hg19	12	49420553	49420554	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL2	NM_003482	exon48	c.15196_15197del	p.5066_5066del	.	.	87.0	31.0	108.0	0.0	.	1173	.	.	Atlas-Indel,Pindel
SCN10A	6336	hgsc.bcm.edu	hg19	3	38793861	38793861	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCN10A	NM_006514	exon11	c.1605delC	p.G535fs	.	.	127.0	10.0	193.0	0.0	.	359	.	.	Atlas-INDEL
ARID1A	8289	hgsc.bcm.edu	hg19	1	27092724	27092724	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARID1A	NM_006015	exon9	c.2744delA	p.Y915fs	.	.	146.0	10.0	207.0	0.0	.	842	.	.	Atlas-INDEL
PLA2G4D	283748	hgsc.bcm.edu	hg19	15	42377319	42377319	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLA2G4D	NM_178034	exon6	c.447delC	p.N149fs	.	.	116.0	12.0	137.0	0.0	.	72	.	.	Atlas-INDEL
C1orf131	128061	hgsc.bcm.edu	hg19	1	231362561	231362561	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C1orf131	NM_152379	exon5	c.618delG	p.K206fs	.	.	214.0	16.0	123.0	0.0	.	30	.	.	Atlas-INDEL
PRR12	57479	hgsc.bcm.edu	hg19	19	50123635	50123635	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRR12	NM_020719	exon10	c.5523delC	p.L1841fs	.	.	185.0	12.0	218.0	0.0	.	157	.	.	Atlas-INDEL
KLF9	687	hgsc.bcm.edu	hg19	9	73028126	73028126	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLF9	NM_001206	exon1	c.155delA	p.D52fs	.	.	150.0	11.0	245.0	0.0	.	16	.	.	Atlas-INDEL
FHAD1	114827	hgsc.bcm.edu	hg19	1	15684625	15684625	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FHAD1	NM_052929	exon20	c.2515delC	p.Q839fs	.	.	164.0	10.0	214.0	0.0	.	78	.	.	Atlas-INDEL
FAM69C	125704	hgsc.bcm.edu	hg19	18	72113977	72113977	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM69C	NM_001044369	exon2	c.741delT	p.G247fs	.	.	131.0	10.0	223.0	0.0	.	45	.	.	Atlas-INDEL
SZT2	23334	hgsc.bcm.edu	hg19	1	43912809	43912809	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SZT2	NM_015284	exon65	c.9084delA	p.G3028fs	.	.	211.0	14.0	278.0	0.0	.	383	.	.	Atlas-INDEL
EXOC2	55770	hgsc.bcm.edu	hg19	6	564874	564874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOC2	NM_018303	exon14	c.1500delT	p.N500fs	.	.	261.0	16.0	375.0	0.0	.	81	.	.	Atlas-INDEL
MAPK10	5602	hgsc.bcm.edu	hg19	4	86985490	86985490	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPK10	NM_138982	exon11	c.1040delG	p.R347fs	.	.	176.0	11.0	225.0	0.0	.	106	.	.	Atlas-INDEL
URGCP	55665	hgsc.bcm.edu	hg19	7	43917420	43917420	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	URGCP	NM_001077663	exon6	c.1643delT	p.V548fs	.	.	197.0	12.0	182.0	0.0	.	170	.	.	Atlas-INDEL
VARS2	57176	hgsc.bcm.edu	hg19	6	30890972	30890972	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VARS2	NM_001167734	exon24	c.2366delC	p.A789fs	.	.	159.0	12.0	261.0	0.0	.	60	.	.	Atlas-INDEL
PSD4	23550	hgsc.bcm.edu	hg19	2	113950863	113950863	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSD4	NM_012455	exon8	c.1947delT	p.S649fs	.	.	165.0	10.0	182.0	0.0	.	74	.	.	Atlas-INDEL
KIT	3815	hgsc.bcm.edu	hg19	4	55565881	55565881	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIT	NM_000222	exon4	c.704delT	p.I235fs	.	.	151.0	10.0	227.0	0.0	.	7396	.	.	Atlas-INDEL
ZNF311	282890	hgsc.bcm.edu	hg19	6	28963809	28963809	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF311	NM_001010877	exon7	c.971delC	p.T324fs	.	.	174.0	13.0	239.0	0.0	.	59	.	.	Atlas-INDEL
TMEM62	80021	hgsc.bcm.edu	hg19	15	43461843	43461843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM62	NM_024956	exon11	c.1348delA	p.I450fs	.	.	163.0	12.0	186.0	0.0	.	47	.	.	Atlas-INDEL
COL24A1	255631	hgsc.bcm.edu	hg19	1	86196292	86196292	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL24A1	NM_152890	exon60	c.5083delC	p.L1695fs	.	.	164.0	10.0	204.0	0.0	.	202	.	.	Atlas-INDEL
ROCK1	6093	hgsc.bcm.edu	hg19	18	18690859	18690859	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ROCK1	NM_005406	exon1	c.14delA	p.D5fs	.	.	143.0	10.0	174.0	0.0	.	162	.	.	Atlas-INDEL
NOL6	65083	hgsc.bcm.edu	hg19	9	33469208	33469208	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOL6	NM_022917	exon6	c.860delA	p.D287fs	.	.	165.0	10.0	211.0	0.0	.	85	.	.	Atlas-INDEL
OR1N2	138882	hgsc.bcm.edu	hg19	9	125316423	125316423	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR1N2	NM_001004457	exon1	c.974delG	p.G325fs	.	.	159.0	10.0	223.0	0.0	.	51	.	.	Atlas-INDEL
TNIK	23043	hgsc.bcm.edu	hg19	3	170801981	170801981	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	TNIK_ENST00000436636,NS,carcinoma,0,2	TNIK	NM_015028	exon26	c.3133delC	p.R1045fs	.	.	203.0	13.0	230.0	0.0	.	313	.	.	Atlas-INDEL
CRYBG3	131544	hgsc.bcm.edu	hg19	3	97596406	97596406	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CRYBG3	NM_153605	exon4	c.6367delG	p.V2123fs	.	.	154.0	10.0	173.0	0.0	.	86	.	.	Atlas-INDEL
CUL7	9820	hgsc.bcm.edu	hg19	6	43015994	43015994	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CUL7,colon,carcinoma,0,1	CUL7	NM_014780	exon10	c.2064-2C>-	.	.	.	134.0	10.0	171.0	0.0	.	133	.	.	Atlas-INDEL
PIK3C2G	5288	hgsc.bcm.edu	hg19	12	18716360	18716360	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3C2G	NM_004570	exon27	c.3706delG	p.E1236fs	.	.	131.0	10.0	162.0	0.0	.	315	.	.	Atlas-INDEL
EDC4	23644	hgsc.bcm.edu	hg19	16	67917535	67917535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EDC4	NM_014329	exon28	c.3913delG	p.V1305fs	.	.	147.0	11.0	172.0	0.0	.	101	.	.	Atlas-INDEL
LGALS3BP	3959	hgsc.bcm.edu	hg19	17	76968422	76968422	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LGALS3BP	NM_005567	exon6	c.995delA	p.E332fs	.	.	143.0	11.0	101.0	0.0	.	47	.	.	Atlas-INDEL
CERKL	375298	hgsc.bcm.edu	hg19	2	182430832	182430832	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CERKL	NM_001030311	exon4	c.631delC	p.H211fs	.	.	265.0	17.0	318.0	0.0	.	138	.	.	Atlas-INDEL
HNRNPH1	3187	hgsc.bcm.edu	hg19	5	179044644	179044644	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HNRNPH1	NM_001257293	exon9	c.929delC	p.S310fs	.	.	204.0	15.0	280.0	0.0	.	62	.	.	Atlas-INDEL
SLC6A4	6532	hgsc.bcm.edu	hg19	17	28544272	28544272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	SLC6A4,NS,carcinoma,0,1	SLC6A4	NM_001045	exon6	c.750delC	p.G250fs	.	.	169.0	12.0	212.0	0.0	.	60	.	.	Atlas-INDEL
ISM2	145501	hgsc.bcm.edu	hg19	14	77942048	77942048	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ISM2	NM_199296	exon7	c.1607delA	p.D536fs	.	.	166.0	10.0	230.0	0.0	.	68	.	.	Atlas-INDEL
ANO7	50636	hgsc.bcm.edu	hg19	2	242129532	242129532	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANO7	NM_001001666	exon2	c.215delG	p.S72fs	.	.	231.0	14.0	319.0	0.0	.	136	.	.	Atlas-INDEL
PRKG2	5593	hgsc.bcm.edu	hg19	4	82027025	82027025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKG2	NM_006259	exon15	c.2006delT	p.M669fs	.	.	164.0	10.0	227.0	0.0	.	195	.	.	Atlas-INDEL
ERN2	10595	hgsc.bcm.edu	hg19	16	23717673	23717673	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERN2	NM_033266	exon7	c.712delA	p.M238fs	.	.	166.0	12.0	210.0	0.0	.	131	.	.	Atlas-INDEL
GCNT2	2651	hgsc.bcm.edu	hg19	6	10586407	10586407	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCNT2	NM_145655	exon1	c.184delG	p.E62fs	.	.	158.0	10.0	247.0	0.0	.	123	.	.	Atlas-INDEL
ZNF324	25799	hgsc.bcm.edu	hg19	19	58983203	58983203	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF324	NM_014347	exon4	c.1343delC	p.T448fs	.	.	153.0	11.0	219.0	0.0	.	46	.	.	Atlas-INDEL
UBR1	197131	hgsc.bcm.edu	hg19	15	43363019	43363019	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	UBR1,NS,carcinoma,0,1	UBR1	NM_174916	exon5	c.634delG	p.E212fs	.	.	130.0	10.0	121.0	0.0	.	124	.	.	Atlas-INDEL
RNASE12	493901	hgsc.bcm.edu	hg19	14	21058692	21058692	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNASE12	NM_001024822	exon1	c.192delG	p.K64fs	.	.	165.0	11.0	192.0	0.0	.	19	.	.	Atlas-INDEL
C9orf84	158401	hgsc.bcm.edu	hg19	9	114453859	114453859	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C9orf84	NM_173521	exon25	c.4207delA	p.N1403fs	.	.	172.0	11.0	228.0	0.0	.	207	.	.	Atlas-INDEL
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24802560	24802560	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6A	NM_014494	exon6	c.2596delT	p.W866fs	.	.	227.0	15.0	306.0	0.0	.	171	.	.	Atlas-INDEL
TSNAX-DISC1	0	hgsc.bcm.edu	hg19	1	232099236	232099236	+	RNA	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	199.0	14.0	137.0	0.0	.	.	.	.	Atlas-INDEL
ZFYVE20	64145	hgsc.bcm.edu	hg19	3	15132024	15132024	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFYVE20	NM_022340	exon5	c.172delG	p.A58fs	.	.	184.0	13.0	219.0	0.0	.	61	.	.	Atlas-INDEL
BMP2K	55589	hgsc.bcm.edu	hg19	4	79768365	79768365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BMP2K	NM_017593	exon6	c.691delG	p.A231fs	.	.	159.0	14.0	245.0	0.0	.	169	.	.	Atlas-INDEL
FOXI1	2299	hgsc.bcm.edu	hg19	5	169533034	169533034	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FOXI1	NM_012188	exon1	c.72delG	p.E24fs	.	.	283.0	17.0	411.0	0.0	.	70	.	.	Atlas-INDEL
PRMT5	10419	hgsc.bcm.edu	hg19	14	23391406	23391406	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRMT5	NM_006109	exon16	c.1741delC	p.P581fs	.	.	135.0	12.0	193.0	0.0	.	101	.	.	Atlas-INDEL
ENTPD6	955	hgsc.bcm.edu	hg19	20	25203522	25203522	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENTPD6	NM_001247	exon12	c.1093delC	p.Q365fs	.	.	151.0	10.0	227.0	0.0	.	57	.	.	Atlas-INDEL
DSP	1832	hgsc.bcm.edu	hg19	6	7585185	7585185	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSP	NM_004415	exon24	c.7689delG	p.L2563fs	.	.	186.0	13.0	211.0	0.0	.	306	.	.	Atlas-INDEL
CNTN6	27255	hgsc.bcm.edu	hg19	3	1427450	1427450	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	CNTN6	NM_014461	exon20	c.2672delG	p.S891fs	.	.	150.0	11.0	203.0	0.0	.	245	.	.	Atlas-INDEL
ZMIZ2	83637	hgsc.bcm.edu	hg19	7	44806215	44806215	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ZMIZ2,colon,carcinoma,0,1	ZMIZ2	NM_031449	exon18	c.2607delG	p.G869fs	.	.	170.0	12.0	109.0	0.0	.	82	.	.	Atlas-INDEL
HELQ	113510	hgsc.bcm.edu	hg19	4	84358058	84358058	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HELQ	NM_133636	exon9	c.2002delA	p.T668fs	.	.	163.0	10.0	234.0	0.0	.	95	.	.	Atlas-INDEL
FBN1	2200	hgsc.bcm.edu	hg19	15	48748935	48748935	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBN1	NM_000138	exon44	c.5322delA	p.P1774fs	.	.	157.0	11.0	205.0	0.0	.	310	.	.	Atlas-INDEL
ACP1	52	hgsc.bcm.edu	hg19	2	277054	277054	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACP1	NM_007099	exon5	c.367delC	p.Q123fs	.	.	171.0	11.0	279.0	0.0	.	42	.	.	Atlas-INDEL
C5orf42	65250	hgsc.bcm.edu	hg19	5	37153894	37153894	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C5orf42	NM_023073	exon41	c.8160delC	p.N2720fs	.	.	164.0	10.0	179.0	0.0	.	422	.	.	Atlas-INDEL
MAN1B1	11253	hgsc.bcm.edu	hg19	9	139994268	139994268	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAN1B1	NM_016219	exon6	c.850delT	p.W284fs	.	.	174.0	11.0	207.0	0.0	.	40	.	.	Atlas-INDEL
NEUROD6	63974	hgsc.bcm.edu	hg19	7	31378032	31378032	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEUROD6	NM_022728	exon2	c.852delT	p.N284fs	.	.	157.0	10.0	121.0	0.0	.	84	.	.	Atlas-INDEL
KAT6A	7994	hgsc.bcm.edu	hg19	8	41791683	41791683	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_006766	exon17	c.4056delA	p.L1352fs	.	.	155.0	10.0	217.0	0.0	.	.	.	.	Atlas-INDEL
LUC7L3	51747	hgsc.bcm.edu	hg19	17	48814327	48814327	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LUC7L3	NM_006107	exon2	c.105delT	p.C35X	.	.	165.0	11.0	209.0	0.0	.	32	.	.	Atlas-INDEL
COG2	22796	hgsc.bcm.edu	hg19	1	230800279	230800279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COG2	NM_007357	exon5	c.430delG	p.E144fs	.	.	269.0	18.0	173.0	0.0	.	61	.	.	Atlas-INDEL
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327823	16327823	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATXN1	NM_000332	exon8	c.720delA	p.P240fs	.	.	179.0	11.0	187.0	0.0	.	117	.	.	Atlas-INDEL
YIPF4	84272	hgsc.bcm.edu	hg19	2	32503243	32503243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	YIPF4	NM_032312	exon1	c.18delG	p.P6fs	.	.	124.0	10.0	184.0	0.0	.	23	.	.	Atlas-INDEL
EHBP1	23301	hgsc.bcm.edu	hg19	2	62991489	62991489	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EHBP1	NM_001142616	exon4	c.250delC	p.L84fs	.	.	164.0	10.0	262.0	0.0	.	127	.	.	Atlas-INDEL
TPCN2	219931	hgsc.bcm.edu	hg19	11	68839465	68839465	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TPCN2	NM_139075	exon11	c.1034delT	p.V345fs	.	.	102.0	10.0	123.0	0.0	.	63	.	.	Atlas-INDEL
SH2D1A	4068	hgsc.bcm.edu	hg19	X	123504064	123504064	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH2D1A	NM_001114937	exon3	c.239delT	p.I80fs	.	.	209.0	15.0	283.0	0.0	.	23	.	.	Atlas-INDEL
KLHDC9	126823	hgsc.bcm.edu	hg19	1	161068399	161068399	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLHDC9	NM_152366	exon1	c.73delC	p.L25fs	.	.	224.0	15.0	209.0	0.0	.	16	.	.	Atlas-INDEL
CD40	958	hgsc.bcm.edu	hg19	20	44747014	44747014	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD40	NM_152854	exon1	c.31delT	p.W11fs	.	.	171.0	11.0	244.0	0.0	.	33	.	.	Atlas-INDEL
HCK	3055	hgsc.bcm.edu	hg19	20	30640230	30640230	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	HCK	NM_001172130	exon1	c.2delT	p.L1fs	.	.	197.0	13.0	299.0	0.0	.	181	.	.	Atlas-INDEL
ELMO1	9844	hgsc.bcm.edu	hg19	7	37172765	37172765	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ELMO1	NM_014800	exon14	c.1162delG	p.A388fs	.	.	175.0	11.0	141.0	0.0	.	141	.	.	Atlas-INDEL
GAD1	2571	hgsc.bcm.edu	hg19	2	171715334	171715334	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GAD1	NM_000817	exon16	c.1541delG	p.C514fs	.	.	182.0	12.0	242.0	0.0	.	79	.	.	Atlas-INDEL
AKIP1	56672	hgsc.bcm.edu	hg19	11	8938845	8938845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKIP1	NM_020642	exon5	c.419delG	p.R140fs	.	.	163.0	11.0	210.0	0.0	.	9	.	.	Atlas-INDEL
MLL4	8085	hgsc.bcm.edu	hg19	19	36212560	36212560	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL4	NM_014727	exon3	c.2310delT	p.P770fs	.	.	103.0	10.0	135.0	0.0	.	229	.	.	Atlas-INDEL
CXorf49	100130361	hgsc.bcm.edu	hg19	X	70984231	70984231	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145140	exon1	c.957delC	p.A319fs	.	.	197.0	12.0	194.0	0.0	.	.	.	.	Atlas-INDEL
SAMD15	161394	hgsc.bcm.edu	hg19	14	77845359	77845359	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SAMD15	NM_001010860	exon1	c.1597delG	p.E533fs	.	.	191.0	12.0	278.0	0.0	.	60	.	.	Atlas-INDEL
C2CD4C	126567	hgsc.bcm.edu	hg19	19	408210	408210	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C2CD4C	NM_001136263	exon2	c.153delC	p.F51fs	.	.	298.0	19.0	310.0	0.0	.	13	.	.	Atlas-INDEL
RIN1	9610	hgsc.bcm.edu	hg19	11	66103273	66103273	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIN1	NM_004292	exon3	c.343delT	p.S115fs	.	.	120.0	10.0	161.0	0.0	.	64	.	.	Atlas-INDEL
ATXN2	6311	hgsc.bcm.edu	hg19	12	111926535	111926535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATXN2	NM_002973	exon15	c.2466delT	p.N822fs	.	.	162.0	10.0	172.0	0.0	.	99	.	.	Atlas-INDEL
PLEKHA3	65977	hgsc.bcm.edu	hg19	2	179363984	179363984	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHA3	NM_019091	exon6	c.659+2A>-	.	.	.	166.0	10.0	264.0	0.0	.	25	.	.	Atlas-INDEL
TIMM44	10469	hgsc.bcm.edu	hg19	19	8002975	8002975	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TIMM44	NM_006351	exon3	c.250delT	p.F84fs	.	.	191.0	13.0	204.0	0.0	.	47	.	.	Atlas-INDEL
APBB1	322	hgsc.bcm.edu	hg19	11	6416867	6416867	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APBB1	NM_001164	exon14	c.2031delT	p.P677fs	.	.	139.0	11.0	166.0	0.0	.	73	.	.	Atlas-INDEL
JAK1	3716	hgsc.bcm.edu	hg19	1	65309771	65309771	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JAK1	NM_002227	exon17	c.2380delT	p.L794X	.	.	150.0	10.0	241.0	0.0	.	209	.	.	Atlas-INDEL
TSPAN19	144448	hgsc.bcm.edu	hg19	12	85421730	85421730	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN19	NM_001100917	exon4	c.212delG	p.C71fs	.	.	171.0	14.0	206.0	0.0	.	23	.	.	Atlas-INDEL
SLC6A14	11254	hgsc.bcm.edu	hg19	X	115577930	115577930	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC6A14	NM_007231	exon7	c.812delT	p.F271fs	.	.	160.0	10.0	205.0	0.0	.	56	.	.	Atlas-INDEL
DACH1	1602	hgsc.bcm.edu	hg19	13	72147000	72147000	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DACH1	NM_080759	exon4	c.1278delA	p.P426fs	.	.	150.0	10.0	208.0	0.0	.	123	.	.	Atlas-INDEL
BCAP31	10134	hgsc.bcm.edu	hg19	X	152967544	152967544	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCAP31	NM_001139457	exon7	c.822delC	p.N274fs	.	.	145.0	10.0	214.0	0.0	.	33	.	.	Atlas-INDEL
INADL	10207	hgsc.bcm.edu	hg19	1	62586958	62586958	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	INADL	NM_176877	exon38	c.4995delG	p.Q1665fs	.	.	159.0	11.0	219.0	0.0	.	179	.	.	Atlas-INDEL
HAMP	57817	hgsc.bcm.edu	hg19	19	35775716	35775716	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HAMP	NM_021175	exon2	c.114delA	p.Q38fs	.	.	156.0	14.0	205.0	0.0	.	14	.	.	Atlas-INDEL
NEK5	341676	hgsc.bcm.edu	hg19	13	52650224	52650224	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEK5	NM_199289	exon19	c.1704delT	p.N568fs	.	.	171.0	11.0	162.0	0.0	.	189	.	.	Atlas-INDEL
ILF3	3609	hgsc.bcm.edu	hg19	19	10798146	10798146	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ILF3	NM_017620	exon18	c.2195delC	p.P732fs	.	.	146.0	11.0	182.0	0.0	.	99	.	.	Atlas-INDEL
UBXN4	23190	hgsc.bcm.edu	hg19	2	136540331	136540331	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBXN4	NM_014607	exon13	c.1400delG	p.R467fs	.	.	128.0	10.0	163.0	0.0	.	54	.	.	Atlas-INDEL
CHD6	84181	hgsc.bcm.edu	hg19	20	40033271	40033271	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD6	NM_032221	exon37	c.8111delA	p.E2704fs	.	.	152.0	10.0	194.0	0.0	.	312	.	.	Atlas-INDEL
TOX2	84969	hgsc.bcm.edu	hg19	20	42694668	42694668	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOX2	NM_001098797	exon7	c.1276delG	p.A426fs	.	.	213.0	16.0	276.0	0.0	.	158	.	.	Atlas-INDEL
PRPF8	10594	hgsc.bcm.edu	hg19	17	1554134	1554134	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRPF8	NM_006445	exon43	c.6971delA	p.E2324fs	.	.	126.0	11.0	131.0	0.0	.	169	.	.	Atlas-INDEL
OR4C46	119749	hgsc.bcm.edu	hg19	11	51515445	51515445	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR4C46	NM_001004703	exon1	c.163delT	p.S55fs	.	.	199.0	13.0	301.0	0.0	.	96	.	.	Atlas-INDEL
TMEM102	284114	hgsc.bcm.edu	hg19	17	7340045	7340045	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM102	NM_178518	exon3	c.746delC	p.P249fs	.	.	161.0	10.0	212.0	0.0	.	11	.	.	Atlas-INDEL
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14024365	14024365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CC2D1A	NM_017721	exon6	c.661delG	p.A221fs	.	.	155.0	10.0	217.0	0.0	.	67	.	.	Atlas-INDEL
KATNAL1	84056	hgsc.bcm.edu	hg19	13	30814622	30814622	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KATNAL1	NM_001014380	exon6	c.702delC	p.F234fs	.	.	147.0	10.0	139.0	0.0	.	53	.	.	Atlas-INDEL
KCND2	3751	hgsc.bcm.edu	hg19	7	120372995	120372995	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCND2	NM_012281	exon2	c.1153delA	p.I385fs	.	.	264.0	18.0	291.0	0.0	.	194	.	.	Atlas-INDEL
HERC1	8925	hgsc.bcm.edu	hg19	15	63999002	63999002	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC1	NM_003922	exon25	c.4614delG	p.L1538fs	.	.	198.0	12.0	189.0	0.0	.	624	.	.	Atlas-INDEL
OR52B6	340980	hgsc.bcm.edu	hg19	11	5602667	5602667	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR52B6	NM_001005162	exon1	c.560delA	p.Y187fs	.	.	152.0	10.0	201.0	0.0	.	37	.	.	Atlas-INDEL
TACC2	10579	hgsc.bcm.edu	hg19	10	123985931	123985931	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TACC2	NM_206862	exon13	c.7658delC	p.T2553fs	.	.	145.0	10.0	224.0	0.0	.	271	.	.	Atlas-INDEL
UBE3B	89910	hgsc.bcm.edu	hg19	12	109921448	109921448	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBE3B	NM_001270451	exon3	c.91delC	p.R31fs	.	.	208.0	13.0	191.0	0.0	.	116	.	.	Atlas-INDEL
ATP2C1	27032	hgsc.bcm.edu	hg19	3	130694322	130694322	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP2C1	NM_001199181	exon17	c.1661delC	p.A554fs	.	.	178.0	11.0	296.0	0.0	.	94	.	.	Atlas-INDEL
MR1	3140	hgsc.bcm.edu	hg19	1	181003146	181003146	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MR1	NM_001195035	exon2	c.2delT	p.M1fs	.	.	173.0	13.0	174.0	0.0	.	46	.	.	Atlas-INDEL
OVOL2	58495	hgsc.bcm.edu	hg19	20	18022253	18022253	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OVOL2	NM_021220	exon3	c.437delG	p.R146fs	.	.	145.0	10.0	189.0	0.0	.	18	.	.	Atlas-INDEL
STOX1	219736	hgsc.bcm.edu	hg19	10	70646243	70646243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STOX1	NM_152709	exon3	c.2690delT	p.F897fs	.	.	112.0	10.0	135.0	0.0	.	75	.	.	Atlas-INDEL
HS3ST5	222537	hgsc.bcm.edu	hg19	6	114378787	114378787	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HS3ST5	NM_153612	exon2	c.676delT	p.Y226fs	.	.	330.0	21.0	401.0	0.0	.	80	.	.	Atlas-INDEL
NIN	51199	hgsc.bcm.edu	hg19	14	51233604	51233604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NIN	NM_020921	exon13	c.1440delC	p.N480fs	.	.	113.0	10.0	168.0	0.0	.	475	.	.	Atlas-INDEL
DNAH12	201625	hgsc.bcm.edu	hg19	3	57456205	57456205	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH12	NM_178504	exon16	c.2071delA	p.N691fs	.	.	228.0	14.0	262.0	0.0	.	182	.	.	Atlas-INDEL
TTC14	151613	hgsc.bcm.edu	hg19	3	180326508	180326508	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTC14	NM_133462	exon11	c.1309delG	p.E437fs	.	.	183.0	11.0	239.0	0.0	.	112	.	.	Atlas-INDEL
KIF26B	55083	hgsc.bcm.edu	hg19	1	245775272	245775272	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF26B	NM_018012	exon9	c.2091delA	p.K697fs	.	.	200.0	12.0	122.0	0.0	.	343	.	.	Atlas-INDEL
HIATL1	84641	hgsc.bcm.edu	hg19	9	97213759	97213759	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIATL1	NM_032558	exon8	c.864delT	p.V288fs	.	.	154.0	12.0	193.0	0.0	.	31	.	.	Atlas-INDEL
DENND2C	163259	hgsc.bcm.edu	hg19	1	115144134	115144134	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DENND2C	NM_001256404	exon13	c.1811delC	p.S604X	.	.	259.0	16.0	374.0	0.0	.	105	.	.	Atlas-INDEL
CDC20B	166979	hgsc.bcm.edu	hg19	5	54424346	54424346	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC20B	NM_001145734	exon7	c.798delC	p.N266fs	.	.	171.0	11.0	262.0	0.0	.	61	.	.	Atlas-INDEL
FAM160A2	84067	hgsc.bcm.edu	hg19	11	6245706	6245706	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM160A2	NM_032127	exon2	c.42delC	p.G14fs	.	.	160.0	11.0	209.0	0.0	.	100	.	.	Atlas-INDEL
OSCP1	127700	hgsc.bcm.edu	hg19	1	36888410	36888410	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OSCP1	NM_145047	exon6	c.709delG	p.E237fs	.	.	197.0	12.0	243.0	0.0	.	48	.	.	Atlas-INDEL
CDV3	55573	hgsc.bcm.edu	hg19	3	133306780	133306780	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDV3	NM_017548	exon5	c.666delC	p.H222fs	.	.	267.0	17.0	328.0	0.0	.	22	.	.	Atlas-INDEL
IGSF10	285313	hgsc.bcm.edu	hg19	3	151164709	151164709	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IGSF10	NM_178822	exon4	c.3061delC	p.R1021fs	.	.	149.0	10.0	157.0	0.0	.	279	.	.	Atlas-INDEL
PLEKHH3	79990	hgsc.bcm.edu	hg19	17	40823012	40823012	+	Splice_Site	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHH3	NM_024927	exon10	c.1421+1A>-	.	.	.	159.0	10.0	193.0	0.0	.	49	.	.	Atlas-INDEL
KIF15	56992	hgsc.bcm.edu	hg19	3	44816769	44816769	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF15	NM_020242	exon3	c.85delG	p.V29fs	.	.	167.0	11.0	212.0	0.0	.	103	.	.	Atlas-INDEL
HERC3	8916	hgsc.bcm.edu	hg19	4	89601295	89601295	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC3	NM_014606	exon20	c.2247delA	p.E749fs	.	.	99.0	13.0	124.0	0.0	.	82	.	.	Atlas-INDEL
USP48	84196	hgsc.bcm.edu	hg19	1	22056297	22056297	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP48	NM_001032730	exon10	c.1201delC	p.P401fs	.	.	152.0	10.0	214.0	0.0	.	91	.	.	Atlas-INDEL
LCA5L	150082	hgsc.bcm.edu	hg19	21	40782217	40782217	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCA5L	NM_152505	exon8	c.1138delT	p.S380fs	.	.	152.0	10.0	223.0	0.0	.	57	.	.	Atlas-INDEL
FBXO11	80204	hgsc.bcm.edu	hg19	2	48066828	48066828	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO11	NM_001190274	exon2	c.314delC	p.T105fs	.	.	128.0	10.0	185.0	0.0	.	127	.	.	Atlas-INDEL
SLCO1C1	53919	hgsc.bcm.edu	hg19	12	20885884	20885884	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1C1	NM_017435	exon10	c.1227delT	p.S409fs	.	.	151.0	11.0	201.0	0.0	.	216	.	.	Atlas-INDEL
SLC8A2	6543	hgsc.bcm.edu	hg19	19	47944446	47944446	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC8A2	NM_015063	exon7	c.1868-2C>-	.	.	.	139.0	10.0	172.0	0.0	.	77	.	.	Atlas-INDEL
ALPK3	57538	hgsc.bcm.edu	hg19	15	85406007	85406007	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALPK3	NM_020778	exon10	c.4876delT	p.S1626fs	.	.	176.0	11.0	227.0	0.0	.	289	.	.	Atlas-INDEL
ZBTB3	79842	hgsc.bcm.edu	hg19	11	62520953	62520953	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZBTB3	NM_024784	exon2	c.335delA	p.D112fs	.	.	180.0	11.0	239.0	0.0	.	47	.	.	Atlas-INDEL
ARAF	369	hgsc.bcm.edu	hg19	X	47426094	47426094	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARAF	NM_001256196	exon7	c.622delG	p.A208fs	.	.	263.0	17.0	383.0	0.0	.	67	.	.	Atlas-INDEL
ATP6AP1L	92270	hgsc.bcm.edu	hg19	5	81613888	81613888	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP6AP1L	NM_001017971	exon4	c.443delC	p.A148fs	.	.	159.0	10.0	236.0	0.0	.	29	.	.	Atlas-INDEL
MSH2	4436	hgsc.bcm.edu	hg19	2	47630437	47630437	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MSH2	NM_000251	exon1	c.106delC	p.L36fs	.	.	206.0	13.0	239.0	0.0	.	198	.	.	Atlas-INDEL
COL28A1	340267	hgsc.bcm.edu	hg19	7	7480482	7480482	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL28A1	NM_001037763	exon21	c.1662delC	p.G554fs	.	.	154.0	10.0	77.0	0.0	.	113	.	.	Atlas-INDEL
ASCC3	10973	hgsc.bcm.edu	hg19	6	100960741	100960741	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ASCC3	NM_006828	exon40	c.6130delG	p.G2044fs	.	.	172.0	11.0	196.0	0.0	.	205	.	.	Atlas-INDEL
GSDMA	284110	hgsc.bcm.edu	hg19	17	38132221	38132221	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSDMA	NM_178171	exon11	c.1065delG	p.E355fs	.	.	217.0	15.0	325.0	0.0	.	26	.	.	Atlas-INDEL
SSPO	23145	hgsc.bcm.edu	hg19	7	149489415	149489415	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon37	c.5567delT	p.L1856fs	.	.	169.0	11.0	129.0	0.0	.	.	.	.	Atlas-INDEL
XRCC6	2547	hgsc.bcm.edu	hg19	22	42033647	42033647	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XRCC6	NM_001469	exon6	c.624delT	p.P208fs	.	.	249.0	15.0	301.0	0.0	.	64	.	.	Atlas-INDEL
MLL5	55904	hgsc.bcm.edu	hg19	7	104745930	104745930	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL5	NM_182931	exon18	c.2240delG	p.G747fs	.	.	132.0	10.0	106.0	0.0	.	173	.	.	Atlas-INDEL
SRP54	6729	hgsc.bcm.edu	hg19	14	35497334	35497334	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRP54	NM_003136	exon15	c.1367delC	p.A456fs	.	.	158.0	11.0	161.0	0.0	.	38	.	.	Atlas-INDEL
TRIM66	9866	hgsc.bcm.edu	hg19	11	8662474	8662474	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM66	NM_014818	exon9	c.1014delA	p.P338fs	.	.	155.0	10.0	140.0	0.0	.	45	.	.	Atlas-INDEL
PHKB	5257	hgsc.bcm.edu	hg19	16	47630338	47630338	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHKB	NM_000293	exon13	c.1258delG	p.E420fs	.	.	131.0	11.0	114.0	0.0	.	298	.	.	Atlas-INDEL
LY75-CD302	100526664	hgsc.bcm.edu	hg19	2	160628476	160628476	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001198759	exon39	c.5509delC	p.H1837fs	.	.	189.0	12.0	230.0	0.0	.	.	.	.	Atlas-INDEL
SHISA2	387914	hgsc.bcm.edu	hg19	13	26620702	26620702	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SHISA2	NM_001007538	exon2	c.838delT	p.F280fs	.	.	90.0	27.0	95.0	0.0	.	43	.	.	Atlas-Indel,Pindel
SV2B	9899	hgsc.bcm.edu	hg19	15	91811750	91811750	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SV2B	NM_014848	exon10	c.1287delG	p.V429fs	.	.	166.0	11.0	262.0	0.0	.	98	.	.	Atlas-INDEL
PNPT1	87178	hgsc.bcm.edu	hg19	2	55887311	55887311	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PNPT1	NM_033109	exon15	c.1266delT	p.N422fs	.	.	155.0	10.0	123.0	0.0	.	68	.	.	Atlas-INDEL
EP400NL	347918	hgsc.bcm.edu	hg19	12	132589038	132589038	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EP400NL	.	.	.	.	.	.	32.0	10.0	29.0	0.0	.	29	.	.	Atlas-INDEL
PREX1	57580	hgsc.bcm.edu	hg19	20	47253224	47253224	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PREX1	NM_020820	exon33	c.3947-2C>-	.	.	.	150.0	11.0	227.0	0.0	.	441	.	.	Atlas-INDEL
KCNK7	10089	hgsc.bcm.edu	hg19	11	65363236	65363236	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK7	NM_005714	exon1	c.9delT	p.G3fs	.	.	275.0	17.0	399.0	0.0	.	22	.	.	Atlas-INDEL
TCEAL4	79921	hgsc.bcm.edu	hg19	X	102841623	102841623	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL4	NM_001006935	exon3	c.19delG	p.E7fs	.	.	150.0	11.0	208.0	0.0	.	18	.	.	Atlas-INDEL
TMEM50A	23585	hgsc.bcm.edu	hg19	1	25683316	25683316	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM50A	NM_014313	exon6	c.399delA	p.V133fs	.	.	170.0	11.0	185.0	0.0	.	17	.	.	Atlas-INDEL
GPANK1	7918	hgsc.bcm.edu	hg19	6	31630338	31630338	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPANK1	NM_001199238	exon4	c.777delC	p.G259fs	.	.	167.0	11.0	225.0	0.0	.	19	.	.	Atlas-INDEL
PAN3	255967	hgsc.bcm.edu	hg19	13	28748431	28748431	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAN3	NM_175854	exon2	c.452delC	p.A151fs	.	.	149.0	10.0	187.0	0.0	.	123	.	.	Atlas-INDEL
BRSK2	9024	hgsc.bcm.edu	hg19	11	1477640	1477640	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,2	BRSK2	NM_001256630	exon17	c.1868delC	p.T623fs	.	.	147.0	10.0	209.0	0.0	.	97	.	.	Atlas-INDEL
CD83	9308	hgsc.bcm.edu	hg19	6	14131848	14131848	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CD83,NS,carcinoma,-1,1	CD83	NM_004233	exon3	c.250delG	p.A84fs	.	.	144.0	11.0	209.0	0.0	.	23	.	.	Atlas-INDEL
UBAC2	337867	hgsc.bcm.edu	hg19	13	99896772	99896772	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBAC2	NM_001144072	exon4	c.282delC	p.S94fs	.	.	145.0	10.0	196.0	0.0	.	23	.	.	Atlas-INDEL
GPR162	27239	hgsc.bcm.edu	hg19	12	6936291	6936291	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPR162	NM_019858	exon5	c.1688delC	p.T563fs	.	.	153.0	10.0	146.0	0.0	.	55	.	.	Atlas-INDEL
LYSMD2	256586	hgsc.bcm.edu	hg19	15	52017185	52017185	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYSMD2	NM_153374	exon2	c.408delT	p.N136fs	.	.	179.0	11.0	234.0	0.0	.	8	.	.	Atlas-INDEL
XRRA1	143570	hgsc.bcm.edu	hg19	11	74574037	74574037	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XRRA1	NM_182969	exon11	c.1010delC	p.S337X	.	.	165.0	10.0	233.0	0.0	.	46	.	.	Atlas-INDEL
THSD7A	221981	hgsc.bcm.edu	hg19	7	11468622	11468622	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THSD7A	NM_015204	exon14	c.3196delC	p.P1066fs	.	.	343.0	21.0	282.0	0.0	.	219	.	.	Atlas-INDEL
BRCA1	672	hgsc.bcm.edu	hg19	17	41219686	41219686	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRCA1	NM_007300	exon17	c.5077delC	p.H1693fs	.	.	116.0	10.0	145.0	0.0	.	304	.	.	Atlas-INDEL
CXCL12	6387	hgsc.bcm.edu	hg19	10	44871433	44871433	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CXCL12	NM_001033886	exon4	c.315delG	p.K105fs	.	.	224.0	15.0	301.0	0.0	.	37	.	.	Atlas-INDEL
LYST	1130	hgsc.bcm.edu	hg19	1	235887447	235887447	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYST	NM_000081	exon39	c.9197delC	p.S3066fs	.	.	291.0	18.0	191.0	0.0	.	370	.	.	Atlas-INDEL
TRAK2	66008	hgsc.bcm.edu	hg19	2	202245603	202245603	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRAK2	NM_015049	exon16	c.2409delG	p.L803fs	.	.	156.0	10.0	243.0	0.0	.	62	.	.	Atlas-INDEL
ZNF705A	440077	hgsc.bcm.edu	hg19	12	8330032	8330032	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF705A	NM_001004328	exon5	c.755delG	p.G252fs	.	.	275.0	17.0	396.0	0.0	.	32	.	.	Atlas-INDEL
TCF7L1	83439	hgsc.bcm.edu	hg19	2	85531091	85531091	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCF7L1	NM_031283	exon6	c.731delT	p.I244fs	.	.	159.0	10.0	190.0	0.0	.	44	.	.	Atlas-INDEL
SGOL2	151246	hgsc.bcm.edu	hg19	2	201436349	201436349	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SGOL2	NM_001160046	exon7	c.1279delG	p.E427fs	.	.	179.0	11.0	216.0	0.0	.	126	.	.	Atlas-INDEL
LEKR1	389170	hgsc.bcm.edu	hg19	3	156745953	156745953	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	LEKR1_ENST00000356539,NS,carcinoma,0,2	LEKR1	NM_001004316	exon12	c.1429delG	p.E477fs	.	.	154.0	13.0	219.0	0.0	.	66	.	.	Atlas-INDEL
PRKD2	25865	hgsc.bcm.edu	hg19	19	47219519	47219519	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKD2	NM_016457	exon1	c.110delA	p.Q37fs	.	.	180.0	11.0	218.0	0.0	.	94	.	.	Atlas-INDEL
MAPK15	225689	hgsc.bcm.edu	hg19	8	144801240	144801240	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPK15	NM_139021	exon6	c.494delT	p.L165fs	.	.	143.0	10.0	137.0	0.0	.	32	.	.	Atlas-INDEL
UNC13D	201294	hgsc.bcm.edu	hg19	17	73836368	73836368	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UNC13D	NM_199242	exon10	c.797delG	p.R266fs	.	.	155.0	10.0	196.0	0.0	.	68	.	.	Atlas-INDEL
PIPSL	266971	hgsc.bcm.edu	hg19	10	95720247	95720247	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	347.0	21.0	431.0	0.0	.	.	.	.	Atlas-INDEL
ZRANB2	9406	hgsc.bcm.edu	hg19	1	71532574	71532574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ZRANB2_ENST00000370920,colon,carcinoma,0,2	ZRANB2	NM_005455	exon9	c.815delG	p.R272fs	.	.	163.0	11.0	231.0	0.0	.	75	.	.	Atlas-INDEL
MLKL	197259	hgsc.bcm.edu	hg19	16	74725195	74725195	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLKL	NM_152649	exon4	c.703delC	p.L235fs	.	.	140.0	10.0	195.0	0.0	.	51	.	.	Atlas-INDEL
HIVEP3	59269	hgsc.bcm.edu	hg19	1	41978825	41978825	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIVEP3	NM_024503	exon8	c.6068delC	p.A2023fs	.	.	194.0	12.0	222.0	0.0	.	235	.	.	Atlas-INDEL
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120468081	120468081	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOTCH2	NM_024408	exon25	c.4359delT	p.G1453fs	.	.	151.0	10.0	236.0	0.0	.	348	.	.	Atlas-INDEL
ATF7IP2	80063	hgsc.bcm.edu	hg19	16	10551340	10551340	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATF7IP2	NM_024997	exon7	c.1305delT	p.S435fs	.	.	186.0	13.0	212.0	0.0	.	40	.	.	Atlas-INDEL
CAPS2	84698	hgsc.bcm.edu	hg19	12	75692472	75692472	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAPS2	NM_032606	exon12	c.1097delA	p.Y366fs	.	.	173.0	11.0	234.0	0.0	.	96	.	.	Atlas-INDEL
MYT1	4661	hgsc.bcm.edu	hg19	20	62851088	62851088	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	MYT1,caecum,carcinoma,0,2	MYT1	NM_004535	exon13	c.1993delG	p.E665fs	.	.	196.0	15.0	334.0	0.0	.	152	.	.	Atlas-INDEL
SSX2IP	117178	hgsc.bcm.edu	hg19	1	85127951	85127951	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SSX2IP	NM_001166293	exon8	c.858delG	p.K286fs	.	.	146.0	10.0	177.0	0.0	.	53	.	.	Atlas-INDEL
XRRA1	143570	hgsc.bcm.edu	hg19	11	74559430	74559430	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XRRA1	NM_182969	exon15	c.1435delT	p.S479fs	.	.	155.0	12.0	210.0	0.0	.	46	.	.	Atlas-INDEL
MGAT5	4249	hgsc.bcm.edu	hg19	2	135107494	135107494	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGAT5	NM_002410	exon9	c.1230delG	p.Q410fs	.	.	129.0	11.0	198.0	0.0	.	84	.	.	Atlas-INDEL
IRS1	3667	hgsc.bcm.edu	hg19	2	227659975	227659975	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IRS1	NM_005544	exon1	c.3481delA	p.K1161fs	.	.	112.0	10.0	162.0	0.0	.	141	.	.	Atlas-INDEL
MYSM1	114803	hgsc.bcm.edu	hg19	1	59137586	59137586	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYSM1	NM_001085487	exon12	c.1618delG	p.G540fs	.	.	164.0	10.0	277.0	0.0	.	50	.	.	Atlas-INDEL
CALD1	800	hgsc.bcm.edu	hg19	7	134618168	134618168	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CALD1	NM_033138	exon5	c.647delC	p.T216fs	.	.	142.0	10.0	111.0	0.0	.	150	.	.	Atlas-INDEL
CYLD	1540	hgsc.bcm.edu	hg19	16	50811827	50811827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CYLD,colon,carcinoma,-1,1	CYLD	NM_015247	exon9	c.1112delC	p.S371X	.	.	152.0	10.0	165.0	0.0	.	150	.	.	Atlas-INDEL
FHOD3	80206	hgsc.bcm.edu	hg19	18	34320658	34320658	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FHOD3	NM_025135	exon18	c.3090delG	p.Q1030fs	.	.	190.0	12.0	239.0	0.0	.	210	.	.	Atlas-INDEL
HP1BP3	50809	hgsc.bcm.edu	hg19	1	21097452	21097452	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HP1BP3	NM_016287	exon6	c.626delG	p.R209fs	.	.	133.0	10.0	222.0	0.0	.	47	.	.	Atlas-INDEL
FASTKD1	79675	hgsc.bcm.edu	hg19	2	170428277	170428277	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTKD1	NM_024622	exon2	c.264delT	p.N88fs	.	.	227.0	14.0	269.0	0.0	.	86	.	.	Atlas-INDEL
PAXIP1	22976	hgsc.bcm.edu	hg19	7	154768002	154768002	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAXIP1	NM_007349	exon6	c.479delT	p.I160fs	.	.	177.0	12.0	195.0	0.0	.	150	.	.	Atlas-INDEL
SNHG12	85028	hgsc.bcm.edu	hg19	1	28906485	28906485	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	161.0	10.0	199.0	0.0	.	.	.	.	Atlas-INDEL
PIGW	284098	hgsc.bcm.edu	hg19	17	34893402	34893402	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIGW	NM_178517	exon2	c.451delC	p.L151fs	.	.	246.0	15.0	311.0	0.0	.	50	.	.	Atlas-INDEL
NEMF	9147	hgsc.bcm.edu	hg19	14	50267183	50267183	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEMF	NM_004713	exon23	c.2328delT	p.N776fs	.	.	204.0	14.0	273.0	0.0	.	79	.	.	Atlas-INDEL
MED25	81857	hgsc.bcm.edu	hg19	19	50339074	50339074	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED25	NM_030973	exon16	c.1836delG	p.Q612fs	.	.	147.0	11.0	187.0	0.0	.	98	.	.	Atlas-INDEL
FASTKD3	79072	hgsc.bcm.edu	hg19	5	7867919	7867919	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTKD3	NM_024091	exon2	c.279delT	p.N93fs	.	.	151.0	10.0	196.0	0.0	.	88	.	.	Atlas-INDEL
ZNF234	10780	hgsc.bcm.edu	hg19	19	44660629	44660629	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF234	NM_006630	exon6	c.459delC	p.Y153X	.	.	169.0	11.0	300.0	0.0	.	132	.	.	Atlas-INDEL
ARHGAP17	55114	hgsc.bcm.edu	hg19	16	24964264	24964264	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP17	NM_001006634	exon11	c.953delA	p.H318fs	.	.	160.0	10.0	236.0	0.0	.	138	.	.	Atlas-INDEL
CHUK	1147	hgsc.bcm.edu	hg19	10	101964874	101964874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHUK	NM_001278	exon12	c.1315delG	p.E439fs	.	.	174.0	12.0	207.0	0.0	.	71	.	.	Atlas-INDEL
CCDC178	374864	hgsc.bcm.edu	hg19	18	30846924	30846924	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001105528	exon13	c.1366delC	p.L456fs	.	.	225.0	17.0	278.0	0.0	.	.	.	.	Atlas-INDEL
MAOB	4129	hgsc.bcm.edu	hg19	X	43637948	43637948	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAOB	NM_000898	exon11	c.1119delT	p.G373fs	.	.	175.0	12.0	257.0	0.0	.	52	.	.	Atlas-INDEL
FAM118B	79607	hgsc.bcm.edu	hg19	11	126120425	126120425	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM118B	NM_024556	exon5	c.363delA	p.T121fs	.	.	160.0	10.0	220.0	0.0	.	29	.	.	Atlas-INDEL
PLAU	5328	hgsc.bcm.edu	hg19	10	75673438	75673438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	PLAU	NM_002658	exon7	c.601delC	p.R201fs	.	.	215.0	13.0	282.0	0.0	.	47	.	.	Atlas-Indel,Pindel
CASC5	57082	hgsc.bcm.edu	hg19	15	40913467	40913467	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CASC5_ENST00000346991,colon,carcinoma,0,2	CASC5	NM_170589	exon11	c.1082delA	p.N361fs	.	.	137.0	10.0	175.0	0.0	.	269	.	.	Atlas-INDEL
CCDC138	165055	hgsc.bcm.edu	hg19	2	109473308	109473308	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC138	NM_144978	exon13	c.1574delG	p.G525fs	.	.	137.0	11.0	231.0	0.0	.	49	.	.	Atlas-INDEL
MAGED1	9500	hgsc.bcm.edu	hg19	X	51637805	51637806	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAGED1	NM_001005333	exon3	c.127_128del	p.43_43del	.	.	130.0	85.0	223.0	0.0	.	84	.	.	Atlas-Indel,Pindel
TPTE2	93492	hgsc.bcm.edu	hg19	13	20039443	20039443	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TPTE2	NM_199254	exon10	c.629delG	p.R210fs	.	.	191.0	12.0	253.0	0.0	.	225	.	.	Atlas-INDEL
SLC35F5	80255	hgsc.bcm.edu	hg19	2	114493428	114493428	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC35F5	NM_025181	exon8	c.759delG	p.L253fs	.	.	203.0	14.0	277.0	0.0	.	60	.	.	Atlas-INDEL
INTS8	55656	hgsc.bcm.edu	hg19	8	95877744	95877744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	INTS8	NM_017864	exon17	c.2086delC	p.L696fs	.	.	291.0	18.0	230.0	0.0	.	92	.	.	Atlas-INDEL
SENP6	26054	hgsc.bcm.edu	hg19	6	76312282	76312282	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SENP6	NM_015571	exon1	c.41delC	p.T14fs	.	.	159.0	10.0	204.0	0.0	.	189	.	.	Atlas-INDEL
PCNX	22990	hgsc.bcm.edu	hg19	14	71500186	71500186	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCNX	NM_014982	exon17	c.3598delA	p.I1200fs	.	.	163.0	11.0	212.0	0.0	.	198	.	.	Atlas-INDEL
ZNF425	155054	hgsc.bcm.edu	hg19	7	148800796	148800796	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF425	NM_001001661	exon4	c.2168delC	p.S723fs	.	.	182.0	11.0	173.0	0.0	.	99	.	.	Atlas-INDEL
ZCCHC14	23174	hgsc.bcm.edu	hg19	16	87445899	87445899	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC14	NM_015144	exon12	c.2018delG	p.R673fs	.	.	229.0	15.0	243.0	0.0	.	87	.	.	Atlas-INDEL
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103090657	103090657	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DYNC2H1	NM_001377	exon56	c.8845delC	p.Q2949fs	.	.	258.0	17.0	271.0	0.0	.	246	.	.	Atlas-INDEL
WNT2	7472	hgsc.bcm.edu	hg19	7	116962981	116962981	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNT2	NM_003391	exon1	c.64delG	p.E22fs	.	.	105.0	10.0	102.0	0.0	.	56	.	.	Atlas-INDEL
BCL9L	283149	hgsc.bcm.edu	hg19	11	118779099	118779099	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCL9L	NM_182557	exon2	c.293delA	p.Q98fs	.	.	172.0	11.0	276.0	0.0	.	254	.	.	Atlas-INDEL
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24008915	24008915	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD2B	NM_017552	exon21	c.2956delC	p.P986fs	.	.	182.0	11.0	204.0	0.0	.	110	.	.	Atlas-INDEL
MUC6	4588	hgsc.bcm.edu	hg19	11	1024954	1024954	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC6	NM_005961	exon24	c.3116delA	p.D1039fs	.	.	199.0	12.0	260.0	0.0	.	408	.	.	Atlas-INDEL
NAA15	80155	hgsc.bcm.edu	hg19	4	140270718	140270718	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NAA15	NM_057175	exon7	c.793delG	p.E265fs	.	.	162.0	11.0	218.0	0.0	.	88	.	.	Atlas-INDEL
MOCOS	55034	hgsc.bcm.edu	hg19	18	33785127	33785127	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MOCOS	NM_017947	exon6	c.1105delG	p.A369fs	.	.	199.0	12.0	260.0	0.0	.	84	.	.	Atlas-INDEL
ADAMTS3	9508	hgsc.bcm.edu	hg19	4	73414286	73414286	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS3	NM_014243	exon3	c.414delA	p.R138fs	.	.	173.0	11.0	257.0	0.0	.	164	.	.	Atlas-INDEL
ADAMTS14	140766	hgsc.bcm.edu	hg19	10	72500743	72500743	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS14	NM_139155	exon12	c.1758-1C>-	.	.	.	162.0	10.0	265.0	0.0	.	148	.	.	Atlas-INDEL
NUP98	4928	hgsc.bcm.edu	hg19	11	3720389	3720389	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUP98	NM_016320	exon25	c.3933delC	p.N1311fs	.	.	190.0	15.0	274.0	0.0	.	149	.	.	Atlas-INDEL
MYH4	4622	hgsc.bcm.edu	hg19	17	10369889	10369889	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH4	NM_017533	exon3	c.175delA	p.K59fs	.	.	261.0	17.0	357.0	0.0	.	349	.	.	Atlas-INDEL
SLC29A1	2030	hgsc.bcm.edu	hg19	6	44199193	44199193	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC29A1	NM_001078175	exon10	c.858delG	p.L286fs	.	.	173.0	11.0	153.0	0.0	.	45	.	.	Atlas-INDEL
OSMR	9180	hgsc.bcm.edu	hg19	5	38917660	38917660	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OSMR	NM_003999	exon10	c.1297delG	p.A433fs	.	.	173.0	11.0	228.0	0.0	.	133	.	.	Atlas-INDEL
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121650545	121650545	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRZ1	NM_001206838	exon12	c.1444delT	p.S482fs	.	.	194.0	12.0	184.0	0.0	.	605	.	.	Atlas-INDEL
MYH15	22989	hgsc.bcm.edu	hg19	3	108182059	108182059	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH15	NM_014981	exon17	c.1824delG	p.K608fs	.	.	191.0	12.0	276.0	0.0	.	223	.	.	Atlas-INDEL
CNNM4	26504	hgsc.bcm.edu	hg19	2	97427712	97427712	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNNM4	NM_020184	exon1	c.975delC	p.D325fs	.	.	198.0	13.0	215.0	0.0	.	48	.	.	Atlas-INDEL
BRCA1	672	hgsc.bcm.edu	hg19	17	41251836	41251836	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRCA1	NM_007298	exon6	c.504delG	p.K168fs	.	.	158.0	11.0	236.0	0.0	.	304	.	.	Atlas-INDEL
MSH4	4438	hgsc.bcm.edu	hg19	1	76269449	76269449	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MSH4	NM_002440	exon2	c.277delG	p.E93fs	.	.	147.0	10.0	168.0	0.0	.	147	.	.	Atlas-INDEL
PTDSS2	81490	hgsc.bcm.edu	hg19	11	489639	489639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTDSS2	NM_030783	exon10	c.1020delG	p.M340fs	.	.	179.0	11.0	259.0	0.0	.	27	.	.	Atlas-INDEL
LCE1E	353135	hgsc.bcm.edu	hg19	1	152760075	152760075	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCE1E	NM_178353	exon2	c.299delC	p.S100X	.	.	207.0	16.0	123.0	0.0	.	26	.	.	Atlas-INDEL
PCF11	51585	hgsc.bcm.edu	hg19	11	82882908	82882908	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCF11	NM_015885	exon9	c.3708delG	p.Q1236fs	.	.	131.0	11.0	173.0	0.0	.	220	.	.	Atlas-INDEL
CEP152	22995	hgsc.bcm.edu	hg19	15	49061255	49061255	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CEP152,caecum,carcinoma,0,1	CEP152	NM_014985	exon14	c.1807delC	p.P603fs	.	.	148.0	10.0	144.0	0.0	.	145	.	.	Atlas-INDEL
PANK2	80025	hgsc.bcm.edu	hg19	20	3899427	3899427	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PANK2	NM_153638	exon6	c.1645delC	p.L549fs	.	.	250.0	15.0	385.0	0.0	.	37	.	.	Atlas-INDEL
SEC16B	89866	hgsc.bcm.edu	hg19	1	177913790	177913790	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC16B	NM_033127	exon15	c.1788delG	p.L596fs	.	.	131.0	11.0	105.0	0.0	.	92	.	.	Atlas-INDEL
CSTF3	1479	hgsc.bcm.edu	hg19	11	33121158	33121158	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CSTF3	NM_001326	exon11	c.933delG	p.K311fs	.	.	248.0	16.0	324.0	0.0	.	59	.	.	Atlas-INDEL
NUDT12	83594	hgsc.bcm.edu	hg19	5	102895020	102895020	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUDT12	NM_031438	exon3	c.357delT	p.N119fs	.	.	164.0	10.0	172.0	0.0	.	27	.	.	Atlas-INDEL
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207175038	207175038	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZDBF2	NM_020923	exon5	c.5785delC	p.Q1929fs	.	.	177.0	11.0	261.0	0.0	.	531	.	.	Atlas-INDEL
HLA-E	3133	hgsc.bcm.edu	hg19	6	30458916	30458916	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HLA-E	NM_005516	exon4	c.612delG	p.E204fs	.	.	174.0	11.0	283.0	0.0	.	35	.	.	Atlas-INDEL
SERHL2	253190	hgsc.bcm.edu	hg19	22	42951001	42951001	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SERHL2	NM_014509	exon2	c.79delT	p.W27fs	.	.	165.0	10.0	225.0	0.0	.	23	.	.	Atlas-INDEL
STK24	8428	hgsc.bcm.edu	hg19	13	99114125	99114125	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	STK24	NM_003576	exon8	c.993delC	p.G331fs	.	.	178.0	11.0	289.0	0.0	.	40	.	.	Atlas-INDEL
PHF21A	51317	hgsc.bcm.edu	hg19	11	45992680	45992680	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHF21A	NM_016621	exon7	c.600delC	p.N200fs	.	.	264.0	17.0	392.0	0.0	.	107	.	.	Atlas-INDEL
USP6	9098	hgsc.bcm.edu	hg19	17	5073793	5073793	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP6	NM_004505	exon28	c.3536delG	p.R1179fs	.	.	160.0	10.0	155.0	0.0	.	213	.	.	Atlas-INDEL
LCA5	167691	hgsc.bcm.edu	hg19	6	80223315	80223315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCA5	NM_001122769	exon3	c.335delT	p.I112fs	.	.	148.0	10.0	216.0	0.0	.	71	.	.	Atlas-INDEL
ITPR2	3709	hgsc.bcm.edu	hg19	12	26839461	26839461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ITPR2,NS,carcinoma,0,1	ITPR2	NM_002223	exon11	c.1102delG	p.E368fs	.	.	142.0	14.0	200.0	0.0	.	270	.	.	Atlas-INDEL
QRFPR	84109	hgsc.bcm.edu	hg19	4	122253996	122253996	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	QRFPR,NS,carcinoma,0,1	QRFPR	NM_198179	exon4	c.778delG	p.E260fs	.	.	221.0	15.0	300.0	0.0	.	65	.	.	Atlas-INDEL
ADAMTSL4	54507	hgsc.bcm.edu	hg19	1	150531054	150531054	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTSL4	NM_019032	exon15	c.2487delG	p.Q829fs	.	.	219.0	14.0	201.0	0.0	.	101	.	.	Atlas-INDEL
AHI1	54806	hgsc.bcm.edu	hg19	6	135768254	135768254	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHI1	NM_001134832	exon12	c.1672delG	p.G558fs	.	.	161.0	10.0	208.0	0.0	.	81	.	.	Atlas-INDEL
TRPV1	7442	hgsc.bcm.edu	hg19	17	3495572	3495572	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRPV1	NM_018727	exon2	c.74delT	p.L25fs	.	.	132.0	11.0	159.0	0.0	.	99	.	.	Atlas-INDEL
F2R	2149	hgsc.bcm.edu	hg19	5	76029269	76029269	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	F2R	NM_001992	exon2	c.1218delT	p.S406fs	.	.	202.0	13.0	325.0	0.0	.	58	.	.	Atlas-INDEL
SI	6476	hgsc.bcm.edu	hg19	3	164700065	164700065	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SI	NM_001041	exon47	c.5382delT	p.N1794fs	.	.	147.0	10.0	194.0	0.0	.	500	.	.	Atlas-INDEL
MICALCL	84953	hgsc.bcm.edu	hg19	11	12315123	12315123	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MICALCL	NM_032867	exon3	c.144delG	p.E48fs	.	.	142.0	10.0	137.0	0.0	.	59	.	.	Atlas-INDEL
OXR1	55074	hgsc.bcm.edu	hg19	8	107726147	107726147	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OXR1	NM_001198532	exon10	c.1892delT	p.V631fs	.	.	223.0	14.0	245.0	0.0	.	190	.	.	Atlas-INDEL
RALGPS2	55103	hgsc.bcm.edu	hg19	1	178780494	178780494	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RALGPS2	NM_152663	exon6	c.341delT	p.L114X	.	.	309.0	19.0	200.0	0.0	.	69	.	.	Atlas-INDEL
ZFY	7544	hgsc.bcm.edu	hg19	Y	2847675	2847675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFY	NM_003411	exon8	c.2046delT	p.G682fs	.	.	186.0	13.0	264.0	0.0	.	20	.	.	Atlas-INDEL
SPAG1	6674	hgsc.bcm.edu	hg19	8	101252868	101252868	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG1	NM_172218	exon18	c.2517delG	p.M839fs	.	.	236.0	18.0	216.0	0.0	.	80	.	.	Atlas-INDEL
IBTK	25998	hgsc.bcm.edu	hg19	6	82949918	82949918	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IBTK	NM_015525	exon2	c.287delA	p.Y96fs	.	.	171.0	11.0	222.0	0.0	.	128	.	.	Atlas-INDEL
FAM117B	150864	hgsc.bcm.edu	hg19	2	203630172	203630172	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM117B	NM_173511	exon8	c.1454delC	p.P485fs	.	.	140.0	10.0	163.0	0.0	.	73	.	.	Atlas-INDEL
FAHD2A	51011	hgsc.bcm.edu	hg19	2	96078466	96078466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	FAHD2A	NM_016044	exon7	c.835delA	p.T279fs	.	.	214.0	14.0	293.0	0.0	.	25	.	.	Atlas-INDEL
GMPPA	29926	hgsc.bcm.edu	hg19	2	220364899	220364899	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GMPPA	NM_205847	exon3	c.96delA	p.A32fs	.	.	152.0	11.0	239.0	0.0	.	50	.	.	Atlas-INDEL
NCF1	653361	hgsc.bcm.edu	hg19	7	74202414	74202414	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	NCF1	NM_000265	exon9	c.886delC	p.R296fs	.	.	158.0	11.0	221.0	0.0	.	26	.	.	Atlas-INDEL
TNS1	7145	hgsc.bcm.edu	hg19	2	218674974	218674974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNS1	NM_022648	exon29	c.4790delC	p.A1597fs	.	.	158.0	13.0	224.0	0.0	.	251	.	.	Atlas-INDEL
YTHDC1	91746	hgsc.bcm.edu	hg19	4	69195927	69195927	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	YTHDC1	NM_001031732	exon8	c.1225delT	p.F409fs	.	.	185.0	12.0	149.0	0.0	.	81	.	.	Atlas-INDEL
ZNF33A	7581	hgsc.bcm.edu	hg19	10	38344315	38344315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF33A	NM_006954	exon5	c.1262delC	p.T421fs	.	.	152.0	10.0	164.0	0.0	.	103	.	.	Atlas-INDEL
HYDIN	54768	hgsc.bcm.edu	hg19	16	70843883	70843883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HYDIN	NM_001270974	exon85	c.14687delT	p.L4896fs	.	.	145.0	10.0	241.0	0.0	.	788	.	.	Atlas-INDEL
TSPAN14	81619	hgsc.bcm.edu	hg19	10	82271995	82271995	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN14	NM_030927	exon6	c.545delT	p.V182fs	.	.	166.0	10.0	233.0	0.0	.	29	.	.	Atlas-INDEL
ADAM8	101	hgsc.bcm.edu	hg19	10	135089017	135089017	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAM8	NM_001164489	exon2	c.122delG	p.R41fs	.	.	247.0	16.0	299.0	0.0	.	41	.	.	Atlas-INDEL
HLA-A	3105	hgsc.bcm.edu	hg19	6	29910372	29910372	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HLA-A	NM_002116	exon1	c.41delC	p.S14fs	.	.	200.0	16.0	292.0	0.0	.	89	.	.	Atlas-INDEL
GRIN2D	2906	hgsc.bcm.edu	hg19	19	48918135	48918135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIN2D	NM_000836	exon6	c.1426delG	p.A476fs	.	.	162.0	11.0	244.0	0.0	.	76	.	.	Atlas-INDEL
SCLT1	132320	hgsc.bcm.edu	hg19	4	129873978	129873978	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCLT1	NM_144643	exon14	c.1165delC	p.Q389fs	.	.	175.0	17.0	227.0	0.0	.	136	.	.	Atlas-INDEL
DCTN2	10540	hgsc.bcm.edu	hg19	12	57928844	57928844	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DCTN2	NM_001261412	exon5	c.365delT	p.I122fs	.	.	209.0	13.0	289.0	0.0	.	51	.	.	Atlas-INDEL
STAB1	23166	hgsc.bcm.edu	hg19	3	52543930	52543930	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STAB1	NM_015136	exon23	c.2391delT	p.S797fs	.	.	219.0	16.0	278.0	0.0	.	178	.	.	Atlas-INDEL
CAB39	51719	hgsc.bcm.edu	hg19	2	231657931	231657931	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAB39	NM_001130850	exon4	c.282delC	p.G94fs	.	.	177.0	15.0	271.0	0.0	.	30	.	.	Atlas-INDEL
SUPT5H	6829	hgsc.bcm.edu	hg19	19	39959402	39959402	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUPT5H	NM_003169	exon13	c.1043delT	p.L348fs	.	.	121.0	10.0	167.0	0.0	.	119	.	.	Atlas-INDEL
DST	667	hgsc.bcm.edu	hg19	6	56340988	56340988	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DST	NM_015548	exon73	c.13955delA	p.Q4652fs	.	.	153.0	11.0	198.0	0.0	.	1427	.	.	Atlas-INDEL
HIRA	7290	hgsc.bcm.edu	hg19	22	19346949	19346949	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIRA	NM_003325	exon18	c.2145delC	p.G715fs	.	.	147.0	10.0	182.0	0.0	.	100	.	.	Atlas-INDEL
SAMM50	25813	hgsc.bcm.edu	hg19	22	44368791	44368791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SAMM50	NM_015380	exon6	c.469delG	p.E157fs	.	.	142.0	11.0	208.0	0.0	.	30	.	.	Atlas-INDEL
ENGASE	64772	hgsc.bcm.edu	hg19	17	77075666	77075666	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENGASE	NM_001042573	exon4	c.511delA	p.I171fs	.	.	156.0	10.0	156.0	0.0	.	55	.	.	Atlas-INDEL
ERF	2077	hgsc.bcm.edu	hg19	19	42753385	42753385	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERF	NM_006494	exon4	c.880delC	p.P294fs	.	.	163.0	11.0	187.0	0.0	.	47	.	.	Atlas-INDEL
CCT8	10694	hgsc.bcm.edu	hg19	21	30439316	30439316	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CCT8,NS,carcinoma,0,1	CCT8	NM_006585	exon5	c.459delC	p.N153fs	.	.	257.0	16.0	317.0	0.0	.	38	.	.	Atlas-INDEL
SRRM1	10250	hgsc.bcm.edu	hg19	1	24996012	24996012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRRM1	NM_005839	exon14	c.2137delT	p.S713fs	.	.	126.0	10.0	198.0	0.0	.	81	.	.	Atlas-INDEL
COL6A3	1293	hgsc.bcm.edu	hg19	2	238285701	238285701	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL6A3	NM_004369	exon7	c.2785delG	p.V929X	.	.	154.0	11.0	233.0	0.0	.	608	.	.	Atlas-INDEL
UGT1A5	54579	hgsc.bcm.edu	hg19	2	234622350	234622350	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT1A5	NM_019078	exon1	c.712delC	p.L238fs	.	.	198.0	13.0	328.0	0.0	.	66	.	.	Atlas-INDEL
WBP11	51729	hgsc.bcm.edu	hg19	12	14941929	14941929	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WBP11	NM_016312	exon11	c.1449delT	p.P483fs	.	.	151.0	10.0	181.0	0.0	.	66	.	.	Atlas-INDEL
RPS27A	6233	hgsc.bcm.edu	hg19	2	55461316	55461316	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPS27A	NM_001135592	exon4	c.164delC	p.T55fs	.	.	249.0	16.0	329.0	0.0	.	12	.	.	Atlas-INDEL
SECISBP2L	9728	hgsc.bcm.edu	hg19	15	49304846	49304846	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SECISBP2L	NM_001193489	exon12	c.1731delG	p.K577fs	.	.	141.0	10.0	165.0	0.0	.	118	.	.	Atlas-INDEL
PHF3	23469	hgsc.bcm.edu	hg19	6	64404551	64404551	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHF3	NM_015153	exon5	c.2576delT	p.M859fs	.	.	164.0	11.0	215.0	0.0	.	191	.	.	Atlas-INDEL
SCEL	8796	hgsc.bcm.edu	hg19	13	78188077	78188077	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCEL	NM_144777	exon24	c.1437delC	p.V479fs	.	.	204.0	15.0	300.0	0.0	.	85	.	.	Atlas-INDEL
PTCH2	8643	hgsc.bcm.edu	hg19	1	45293130	45293130	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCH2	NM_003738	exon15	c.2316delA	p.P772fs	.	.	189.0	13.0	241.0	0.0	.	96	.	.	Atlas-INDEL
TRIM27	5987	hgsc.bcm.edu	hg19	6	28887983	28887983	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM27	NM_006510	exon3	c.554delA	p.E185fs	.	.	181.0	11.0	249.0	0.0	.	26	.	.	Atlas-INDEL
SPHK2	56848	hgsc.bcm.edu	hg19	19	49132347	49132347	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPHK2	NM_020126	exon7	c.1281delG	p.L427fs	.	.	177.0	11.0	235.0	0.0	.	62	.	.	Atlas-INDEL
CCDC126	90693	hgsc.bcm.edu	hg19	7	23650955	23650955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC126	NM_138771	exon3	c.20delG	p.R7fs	.	.	229.0	15.0	164.0	0.0	.	16	.	.	Atlas-INDEL
NCKAP5L	57701	hgsc.bcm.edu	hg19	12	50186232	50186232	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCKAP5L	NM_001037806	exon12	c.3790delA	p.M1264fs	.	.	149.0	13.0	165.0	0.0	.	142	.	.	Atlas-INDEL
IFI27L1	122509	hgsc.bcm.edu	hg19	14	94568273	94568273	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFI27L1	NM_145249	exon4	c.174delC	p.N58fs	.	.	265.0	16.0	319.0	0.0	.	11	.	.	Atlas-INDEL
PLB1	151056	hgsc.bcm.edu	hg19	2	28820879	28820879	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLB1	NM_153021	exon34	c.2328delA	p.G776fs	.	.	177.0	11.0	225.0	0.0	.	255	.	.	Atlas-INDEL
ARHGAP39	80728	hgsc.bcm.edu	hg19	8	145759584	145759584	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP39	NM_025251	exon9	c.2618delT	p.V873fs	.	.	235.0	15.0	233.0	0.0	.	80	.	.	Atlas-INDEL
MID2	11043	hgsc.bcm.edu	hg19	X	107084012	107084012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MID2	NM_012216	exon2	c.116delA	p.D39fs	.	.	158.0	10.0	246.0	0.0	.	122	.	.	Atlas-INDEL
TEFM	79736	hgsc.bcm.edu	hg19	17	29231265	29231265	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_024683	exon2	c.315delC	p.N105fs	.	.	164.0	10.0	246.0	0.0	.	.	.	.	Atlas-INDEL
PIWIL3	440822	hgsc.bcm.edu	hg19	22	25153878	25153878	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIWIL3	NM_001008496	exon4	c.353delC	p.T118fs	.	.	137.0	12.0	176.0	0.0	.	115	.	.	Atlas-INDEL
LCE2D	353141	hgsc.bcm.edu	hg19	1	152636615	152636615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCE2D	NM_178430	exon2	c.33delG	p.Q11fs	.	.	266.0	16.0	181.0	0.0	.	26	.	.	Atlas-INDEL
CDH10	1008	hgsc.bcm.edu	hg19	5	24509876	24509876	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDH10	NM_006727	exon7	c.1056delC	p.N352fs	.	.	117.0	10.0	147.0	0.0	.	391	.	.	Atlas-INDEL
BST2	684	hgsc.bcm.edu	hg19	19	17516225	17516225	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BST2	NM_004335	exon1	c.161delG	p.R54fs	.	.	173.0	11.0	203.0	0.0	.	28	.	.	Atlas-INDEL
AFF1	4299	hgsc.bcm.edu	hg19	4	88053466	88053466	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AFF1	NM_001166693	exon19	c.3216delT	p.C1072X	.	.	220.0	14.0	330.0	0.0	.	102	.	.	Atlas-INDEL
TMEM200B	399474	hgsc.bcm.edu	hg19	1	29447542	29447542	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM200B	NM_001171868	exon2	c.800delA	p.E267fs	.	.	195.0	12.0	240.0	0.0	.	9	.	.	Atlas-INDEL
IPPK	64768	hgsc.bcm.edu	hg19	9	95432235	95432235	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IPPK	NM_022755	exon1	c.37delT	p.Y13fs	.	.	105.0	10.0	167.0	0.0	.	34	.	.	Atlas-INDEL
WNK1	65125	hgsc.bcm.edu	hg19	12	989892	989892	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNK1	NM_001184985	exon12	c.3617delT	p.F1206fs	.	.	220.0	14.0	317.0	0.0	.	403	.	.	Atlas-INDEL
GDF5	8200	hgsc.bcm.edu	hg19	20	34022065	34022065	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDF5	NM_000557	exon2	c.1149delA	p.P383fs	.	.	154.0	11.0	195.0	0.0	.	66	.	.	Atlas-INDEL
CDK12	51755	hgsc.bcm.edu	hg19	17	37681026	37681026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDK12	NM_016507	exon12	c.3194delC	p.T1065fs	.	.	156.0	10.0	226.0	0.0	.	161	.	.	Atlas-INDEL
C17orf66	256957	hgsc.bcm.edu	hg19	17	34195732	34195732	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C17orf66	NM_152781	exon1	c.16delT	p.S6fs	.	.	112.0	10.0	157.0	0.0	.	57	.	.	Atlas-INDEL
ATF6	22926	hgsc.bcm.edu	hg19	1	161816357	161816357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ATF6,NS,carcinoma,0,1	ATF6	NM_007348	exon10	c.1305delG	p.Q435fs	.	.	181.0	11.0	144.0	0.0	.	84	.	.	Atlas-INDEL
FKBP4	2288	hgsc.bcm.edu	hg19	12	2907011	2907011	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FKBP4	NM_002014	exon3	c.366delT	p.I122fs	.	.	187.0	13.0	213.0	0.0	.	29	.	.	Atlas-INDEL
CCDC79	283847	hgsc.bcm.edu	hg19	16	66824575	66824575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	CCDC79	NM_001136505	exon5	c.195delT	p.N65fs	.	.	236.0	16.0	284.0	0.0	.	32	.	.	Atlas-Indel,Pindel
TOP2A	7153	hgsc.bcm.edu	hg19	17	38552661	38552661	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOP2A	NM_001067	exon28	c.3595delA	p.K1199fs	.	.	120.0	10.0	205.0	0.0	.	124	.	.	Atlas-INDEL
DOCK4	9732	hgsc.bcm.edu	hg19	7	111448882	111448882	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOCK4	NM_014705	exon30	c.3162delC	p.N1054fs	.	.	253.0	16.0	288.0	0.0	.	365	.	.	Atlas-INDEL
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41009859	41009859	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPTBN4	NM_020971	exon12	c.1484delT	p.L495fs	.	.	148.0	10.0	213.0	0.0	.	213	.	.	Atlas-INDEL
EMC10	284361	hgsc.bcm.edu	hg19	19	50983927	50983927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_175063	exon5	c.491delA	p.H164fs	.	.	77.0	10.0	94.0	0.0	.	.	.	.	Atlas-INDEL
ARHGAP5	394	hgsc.bcm.edu	hg19	14	32560705	32560705	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP5	NM_001173	exon2	c.829delG	p.E277fs	.	.	169.0	13.0	215.0	0.0	.	166	.	.	Atlas-INDEL
LOC553103	0	hgsc.bcm.edu	hg19	5	131660257	131660257	+	RNA	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	189.0	12.0	230.0	0.0	.	.	.	.	Atlas-INDEL
PCNXL4	64430	hgsc.bcm.edu	hg19	14	60587948	60587948	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_022495	exon7	c.1274delG	p.R425fs	.	.	180.0	12.0	233.0	0.0	.	.	.	.	Atlas-INDEL
PLCH1	23007	hgsc.bcm.edu	hg19	3	155199916	155199916	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLCH1	NM_001130960	exon23	c.3924delT	p.P1308fs	.	.	198.0	13.0	243.0	0.0	.	406	.	.	Atlas-INDEL
IFNA16	3449	hgsc.bcm.edu	hg19	9	21216773	21216773	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFNA16	NM_002173	exon1	c.533delC	p.S178X	.	.	312.0	22.0	448.0	0.0	.	27	.	.	Atlas-INDEL
APEH	327	hgsc.bcm.edu	hg19	3	49714427	49714427	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APEH	NM_001640	exon10	c.968delT	p.I323fs	.	.	194.0	13.0	279.0	0.0	.	45	.	.	Atlas-INDEL
MAPT	4137	hgsc.bcm.edu	hg19	17	44039763	44039763	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPT	NM_005910	exon2	c.59delT	p.L20fs	.	.	151.0	10.0	151.0	0.0	.	135	.	.	Atlas-INDEL
CNOT2	4848	hgsc.bcm.edu	hg19	12	70747643	70747643	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CNOT2,NS,carcinoma,0,1	CNOT2	NM_001199302	exon17	c.1570delC	p.R524fs	.	.	175.0	11.0	261.0	0.0	.	53	.	.	Atlas-INDEL
ASIC5	51802	hgsc.bcm.edu	hg19	4	156763391	156763391	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_017419	exon6	c.978delG	p.K326fs	.	.	182.0	11.0	214.0	0.0	.	.	.	.	Atlas-INDEL
PLD2	5338	hgsc.bcm.edu	hg19	17	4719139	4719139	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLD2	NM_001243108	exon14	c.1364delT	p.L455fs	.	.	228.0	14.0	376.0	0.0	.	138	.	.	Atlas-INDEL
UNG	7374	hgsc.bcm.edu	hg19	12	109541376	109541376	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UNG	NM_080911	exon6	c.760delT	p.W254fs	.	.	147.0	11.0	227.0	0.0	.	30	.	.	Atlas-INDEL
PDLIM7	9260	hgsc.bcm.edu	hg19	5	176918124	176918124	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDLIM7	NM_213636	exon6	c.423delA	p.P141fs	.	.	153.0	10.0	221.0	0.0	.	32	.	.	Atlas-INDEL
SYNC	81493	hgsc.bcm.edu	hg19	1	33147421	33147421	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYNC	NM_001161708	exon4	c.1400delC	p.T467fs	.	.	238.0	15.0	292.0	0.0	.	36	.	.	Atlas-INDEL
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14031457	14031457	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CC2D1A,colon,carcinoma,0,1	CC2D1A	NM_017721	exon13	c.1443delG	p.A481fs	.	.	182.0	11.0	209.0	0.0	.	67	.	.	Atlas-INDEL
SNTN	132203	hgsc.bcm.edu	hg19	3	63645488	63645488	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNTN	NM_001080537	exon3	c.232delG	p.E78fs	.	.	161.0	10.0	206.0	0.0	.	17	.	.	Atlas-INDEL
SEC23IP	11196	hgsc.bcm.edu	hg19	10	121675303	121675303	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC23IP	NM_007190	exon8	c.1445delA	p.H482fs	.	.	99.0	10.0	107.0	0.0	.	100	.	.	Atlas-INDEL
LRBA	987	hgsc.bcm.edu	hg19	4	151789357	151789357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRBA	NM_006726	exon21	c.2551delA	p.N851fs	.	.	161.0	10.0	215.0	0.0	.	253	.	.	Atlas-INDEL
PARD3B	117583	hgsc.bcm.edu	hg19	2	206305272	206305272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARD3B	NM_152526	exon19	c.2733delT	p.S911fs	.	.	210.0	14.0	293.0	0.0	.	314	.	.	Atlas-INDEL
KIF20A	10112	hgsc.bcm.edu	hg19	5	137522908	137522908	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF20A	NM_005733	exon19	c.2478delC	p.A826fs	.	.	139.0	10.0	175.0	0.0	.	53	.	.	Atlas-INDEL
CCT7	10574	hgsc.bcm.edu	hg19	2	73471802	73471802	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCT7	NM_006429	exon6	c.576delT	p.L192fs	.	.	169.0	11.0	241.0	0.0	.	60	.	.	Atlas-INDEL
EVPL	2125	hgsc.bcm.edu	hg19	17	74018287	74018287	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EVPL	NM_001988	exon6	c.629delA	p.Q210fs	.	.	164.0	10.0	130.0	0.0	.	155	.	.	Atlas-INDEL
PRR22	163154	hgsc.bcm.edu	hg19	19	5783634	5783634	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRR22	NM_001134316	exon3	c.625delG	p.D209fs	.	.	182.0	11.0	263.0	0.0	.	25	.	.	Atlas-INDEL
ATG2A	23130	hgsc.bcm.edu	hg19	11	64673130	64673130	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATG2A	NM_015104	exon25	c.3372-2C>-	.	.	.	176.0	11.0	215.0	0.0	.	133	.	.	Atlas-INDEL
SOX2	6657	hgsc.bcm.edu	hg19	3	181431356	181431356	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SOX2	.	.	.	.	.	.	123.0	11.0	135.0	0.0	.	28	.	.	Atlas-INDEL
BRAP	8315	hgsc.bcm.edu	hg19	12	112082345	112082345	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRAP	NM_006768	exon12	c.1438delG	p.V480fs	.	.	186.0	13.0	236.0	0.0	.	42	.	.	Atlas-INDEL
CCDC38	120935	hgsc.bcm.edu	hg19	12	96275288	96275288	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC38	NM_182496	exon11	c.966delA	p.L322fs	.	.	194.0	12.0	244.0	0.0	.	45	.	.	Atlas-INDEL
NEXN	91624	hgsc.bcm.edu	hg19	1	78401592	78401592	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEXN	NM_144573	exon11	c.1335delT	p.A445fs	.	.	193.0	12.0	265.0	0.0	.	77	.	.	Atlas-INDEL
ARID4A	5926	hgsc.bcm.edu	hg19	14	58796746	58796746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARID4A	NM_002892	exon11	c.764delT	p.L255X	.	.	167.0	11.0	195.0	0.0	.	222	.	.	Atlas-INDEL
PDIA5	10954	hgsc.bcm.edu	hg19	3	122869147	122869147	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDIA5	NM_006810	exon14	c.1208delT	p.V403fs	.	.	144.0	10.0	141.0	0.0	.	66	.	.	Atlas-INDEL
NUDCD3	23386	hgsc.bcm.edu	hg19	7	44425624	44425624	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUDCD3	NM_015332	exon6	c.1073delC	p.A358fs	.	.	183.0	11.0	124.0	0.0	.	20	.	.	Atlas-INDEL
NAGS	162417	hgsc.bcm.edu	hg19	17	42084998	42084998	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NAGS	NM_153006	exon6	c.1307delT	p.L436fs	.	.	153.0	11.0	254.0	0.0	.	25	.	.	Atlas-INDEL
TRMT11	60487	hgsc.bcm.edu	hg19	6	126332450	126332450	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRMT11	NM_001031712	exon9	c.811delA	p.R271fs	.	.	140.0	10.0	165.0	0.0	.	43	.	.	Atlas-INDEL
CIB3	117286	hgsc.bcm.edu	hg19	19	16275654	16275654	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CIB3,NS,carcinoma,0,3	CIB3	NM_054113	exon5	c.418delC	p.L140X	.	.	226.0	16.0	243.0	0.0	.	35	.	.	Atlas-INDEL
CORO2A	7464	hgsc.bcm.edu	hg19	9	100890927	100890927	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CORO2A	NM_003389	exon9	c.1043delG	p.S348fs	.	.	178.0	12.0	203.0	0.0	.	54	.	.	Atlas-INDEL
WDR93	56964	hgsc.bcm.edu	hg19	15	90278766	90278766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR93	NM_020212	exon14	c.1589delT	p.V530fs	.	.	137.0	10.0	156.0	0.0	.	63	.	.	Atlas-INDEL
IDI1	3422	hgsc.bcm.edu	hg19	10	1087256	1087256	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	IDI1	NM_004508	exon5	c.727delG	p.A243fs	.	.	219.0	14.0	255.0	0.0	.	22	.	.	Atlas-INDEL
NUMBL	9253	hgsc.bcm.edu	hg19	19	41174028	41174028	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUMBL	NM_004756	exon10	c.1176delT	p.G392fs	.	.	142.0	11.0	148.0	0.0	.	49	.	.	Atlas-INDEL
OR2T35	403244	hgsc.bcm.edu	hg19	1	248801642	248801642	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR2T35	NM_001001827	exon1	c.919delA	p.R307fs	.	.	160.0	10.0	116.0	0.0	.	19	.	.	Atlas-INDEL
STRAP	11171	hgsc.bcm.edu	hg19	12	16047053	16047053	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STRAP	NM_007178	exon5	c.475delC	p.L159fs	.	.	171.0	14.0	256.0	0.0	.	33	.	.	Atlas-INDEL
OPA1	4976	hgsc.bcm.edu	hg19	3	193332740	193332740	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OPA1	NM_130832	exon2	c.260delA	p.N87fs	.	.	175.0	11.0	240.0	0.0	.	79	.	.	Atlas-INDEL
SEC31B	25956	hgsc.bcm.edu	hg19	10	102249484	102249484	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC31B	NM_015490	exon22	c.3001delA	p.R1001fs	.	.	142.0	10.0	178.0	0.0	.	84	.	.	Atlas-INDEL
MATR3	9782	hgsc.bcm.edu	hg19	5	138657644	138657644	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MATR3	NM_018834	exon10	c.1659delG	p.L553fs	.	.	135.0	10.0	152.0	0.0	.	85	.	.	Atlas-INDEL
SLC12A7	10723	hgsc.bcm.edu	hg19	5	1078065	1078065	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC12A7	NM_006598	exon12	c.1513delT	p.W505fs	.	.	189.0	13.0	173.0	0.0	.	97	.	.	Atlas-INDEL
TDRD7	23424	hgsc.bcm.edu	hg19	9	100203999	100203999	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TDRD7	NM_014290	exon6	c.696delT	p.Y232X	.	.	191.0	12.0	238.0	0.0	.	78	.	.	Atlas-INDEL
SLC12A1	6557	hgsc.bcm.edu	hg19	15	48527143	48527143	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,2	SLC12A1	NM_001184832	exon9	c.1156delA	p.I386fs	.	.	219.0	15.0	258.0	0.0	.	243	.	.	Atlas-INDEL
MMP16	4325	hgsc.bcm.edu	hg19	8	89179946	89179946	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MMP16	NM_005941	exon4	c.662delA	p.H221fs	.	.	194.0	14.0	166.0	0.0	.	176	.	.	Atlas-INDEL
PROX1	5629	hgsc.bcm.edu	hg19	1	214209037	214209037	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PROX1	NM_001270616	exon5	c.2073delG	p.E691fs	.	.	267.0	17.0	249.0	0.0	.	124	.	.	Atlas-INDEL
EPHA5	2044	hgsc.bcm.edu	hg19	4	66467573	66467573	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPHA5	NM_182472	exon3	c.697delT	p.C233fs	.	.	128.0	10.0	175.0	0.0	.	315	.	.	Atlas-INDEL
SORBS2	8470	hgsc.bcm.edu	hg19	4	186598269	186598273	+	Frame_Shift_Del	DEL	TCCTG	TCCTG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TCCTG	TCCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SORBS2	NM_001145673	exon5	c.371_375del	p.124_125del	.	.	126.0	41.0	167.0	0.0	.	300	.	.	Atlas-Indel,Pindel
VPS13D	55187	hgsc.bcm.edu	hg19	1	12414184	12414184	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS13D	NM_015378	exon47	c.9584delA	p.D3195fs	.	.	195.0	14.0	271.0	0.0	.	316	.	.	Atlas-INDEL
PTPRT	11122	hgsc.bcm.edu	hg19	20	40944372	40944372	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRT	NM_007050	exon12	c.2131delG	p.A711fs	.	.	198.0	12.0	245.0	0.0	.	372	.	.	Atlas-INDEL
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233659657	233659657	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GIGYF2	NM_001103148	exon12	c.1461+2A>-	.	.	.	139.0	10.0	200.0	0.0	.	288	.	.	Atlas-INDEL
MYH14	79784	hgsc.bcm.edu	hg19	19	50771494	50771494	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH14	NM_001145809	exon24	c.2902delC	p.R968fs	.	.	161.0	10.0	219.0	0.0	.	261	.	.	Atlas-INDEL
LOC653501	0	hgsc.bcm.edu	hg19	9	39445798	39445798	+	RNA	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	234.0	15.0	277.0	0.0	.	.	.	.	Atlas-INDEL
COL11A1	1301	hgsc.bcm.edu	hg19	1	103364549	103364549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL11A1	NM_080629	exon55	c.4125delT	p.G1375fs	.	.	171.0	13.0	174.0	0.0	.	972	.	.	Atlas-INDEL
OR10H1	26539	hgsc.bcm.edu	hg19	19	15917904	15917904	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR10H1	NM_013940	exon1	c.945delT	p.N315fs	.	.	178.0	11.0	250.0	0.0	.	59	.	.	Atlas-INDEL
MTBP	27085	hgsc.bcm.edu	hg19	8	121528183	121528183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	MTBP,colon,carcinoma,0,1	MTBP	NM_022045	exon18	c.1997delG	p.R666fs	.	.	177.0	11.0	167.0	0.0	.	77	.	.	Atlas-INDEL
GALNTL5	168391	hgsc.bcm.edu	hg19	7	151704993	151704993	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GALNTL5	NM_145292	exon7	c.989delA	p.D330fs	.	.	155.0	10.0	173.0	0.0	.	87	.	.	Atlas-INDEL
GATA1	2623	hgsc.bcm.edu	hg19	X	48652397	48652397	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GATA1	NM_002049	exon6	c.1067delG	p.G356fs	.	.	159.0	10.0	179.0	0.0	.	342	.	.	Atlas-INDEL
UBR2	23304	hgsc.bcm.edu	hg19	6	42620286	42620286	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBR2	NM_015255	exon25	c.2671delA	p.I891fs	.	.	183.0	13.0	240.0	0.0	.	134	.	.	Atlas-INDEL
ZHX1	11244	hgsc.bcm.edu	hg19	8	124266657	124266657	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZHX1	NM_001017926	exon3	c.1531delT	p.W511fs	.	.	210.0	14.0	192.0	0.0	.	89	.	.	Atlas-INDEL
TFPI	7035	hgsc.bcm.edu	hg19	2	188349646	188349646	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFPI	NM_001032281	exon5	c.428delA	p.Y143fs	.	.	165.0	10.0	246.0	0.0	.	66	.	.	Atlas-INDEL
UGT2B28	54490	hgsc.bcm.edu	hg19	4	70156317	70156317	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT2B28	NM_053039	exon5	c.1097delC	p.P366fs	.	.	185.0	12.0	210.0	0.0	.	101	.	.	Atlas-INDEL
TSPAN12	23554	hgsc.bcm.edu	hg19	7	120450526	120450526	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN12	NM_012338	exon6	c.460delC	p.Q154fs	.	.	154.0	11.0	164.0	0.0	.	25	.	.	Atlas-INDEL
EFHA2	286097	hgsc.bcm.edu	hg19	8	16939226	16939226	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EFHA2	NM_181723	exon5	c.670delC	p.L224fs	.	.	110.0	13.0	171.0	0.0	.	60	.	.	Atlas-INDEL
SCN1A	6323	hgsc.bcm.edu	hg19	2	166903299	166903299	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCN1A	NM_001165964	exon9	c.1359delG	p.K453fs	.	.	172.0	12.0	244.0	0.0	.	641	.	.	Atlas-INDEL
CLIP3	25999	hgsc.bcm.edu	hg19	19	36523228	36523228	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLIP3	NM_001199570	exon1	c.33delG	p.P11fs	.	.	149.0	11.0	153.0	0.0	.	53	.	.	Atlas-INDEL
FANCG	2189	hgsc.bcm.edu	hg19	9	35078176	35078176	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FANCG	NM_004629	exon4	c.473delA	p.D158fs	.	.	172.0	11.0	272.0	0.0	.	56	.	.	Atlas-INDEL
PRCP	5547	hgsc.bcm.edu	hg19	11	82536121	82536121	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRCP	NM_199418	exon10	c.1382delA	p.D461fs	.	.	171.0	11.0	244.0	0.0	.	69	.	.	Atlas-INDEL
DLG2	1740	hgsc.bcm.edu	hg19	11	83183770	83183770	+	Splice_Site	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLG2	NM_001364	exon19	c.2029+1A>-	.	.	.	161.0	10.0	219.0	0.0	.	448	.	.	Atlas-INDEL
SIKE1	80143	hgsc.bcm.edu	hg19	1	115321811	115321811	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SIKE1	NM_001102396	exon3	c.373delG	p.A125fs	.	.	150.0	11.0	195.0	0.0	.	12	.	.	Atlas-INDEL
PLBD1	79887	hgsc.bcm.edu	hg19	12	14693810	14693810	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLBD1	NM_024829	exon4	c.447delT	p.N149fs	.	.	165.0	12.0	209.0	0.0	.	36	.	.	Atlas-INDEL
APOF	319	hgsc.bcm.edu	hg19	12	56755066	56755066	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOF	NM_001638	exon2	c.925delT	p.W309fs	.	.	192.0	12.0	251.0	0.0	.	13	.	.	Atlas-INDEL
FAT1	2195	hgsc.bcm.edu	hg19	4	187510197	187510197	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAT1	NM_005245	exon27	c.13317delA	p.P4439fs	.	.	229.0	15.0	224.0	0.0	.	500	.	.	Atlas-INDEL
RSPH1	89765	hgsc.bcm.edu	hg19	21	43905780	43905780	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RSPH1	NM_080860	exon5	c.501delT	p.N167fs	.	.	199.0	12.0	267.0	0.0	.	36	.	.	Atlas-INDEL
FKBP11	51303	hgsc.bcm.edu	hg19	12	49318434	49318434	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FKBP11	NM_016594	exon4	c.196-2C>-	.	.	.	111.0	10.0	149.0	0.0	.	12	.	.	Atlas-INDEL
ARHGAP30	257106	hgsc.bcm.edu	hg19	1	161017601	161017601	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP30	NM_001025598	exon12	c.3211delA	p.R1071fs	.	.	203.0	13.0	116.0	0.0	.	105	.	.	Atlas-INDEL
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128864241	128864241	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS19	NM_133638	exon6	c.1180delG	p.E394fs	.	.	179.0	11.0	234.0	0.0	.	216	.	.	Atlas-INDEL
PVRL3	25945	hgsc.bcm.edu	hg19	3	110852954	110852954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PVRL3	NM_015480	exon6	c.1541delT	p.L514fs	.	.	171.0	11.0	234.0	0.0	.	78	.	.	Atlas-INDEL
EPPK1	83481	hgsc.bcm.edu	hg19	8	144946981	144946981	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPPK1	NM_031308	exon1	c.442delC	p.Q148fs	.	.	172.0	11.0	191.0	0.0	.	199	.	.	Atlas-INDEL
BCL9	607	hgsc.bcm.edu	hg19	1	147091647	147091647	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCL9	NM_004326	exon8	c.1685delT	p.L562fs	.	.	163.0	10.0	121.0	0.0	.	150	.	.	Atlas-INDEL
PRDM6	93166	hgsc.bcm.edu	hg19	5	122425749	122425749	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRDM6	NM_001136239	exon2	c.39delC	p.L13fs	.	.	170.0	12.0	253.0	0.0	.	26	.	.	Atlas-INDEL
PUM1	9698	hgsc.bcm.edu	hg19	1	31418315	31418315	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PUM1	NM_001020658	exon18	c.2873delA	p.E958fs	.	.	136.0	10.0	199.0	0.0	.	107	.	.	Atlas-INDEL
IFT172	26160	hgsc.bcm.edu	hg19	2	27707958	27707958	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFT172	NM_015662	exon3	c.224delC	p.S75fs	.	.	213.0	13.0	254.0	0.0	.	119	.	.	Atlas-INDEL
BHLHA15	168620	hgsc.bcm.edu	hg19	7	97841927	97841927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BHLHA15	NM_177455	exon1	c.305delT	p.I102fs	.	.	209.0	13.0	218.0	0.0	.	11	.	.	Atlas-INDEL
ADAMTS3	9508	hgsc.bcm.edu	hg19	4	73205236	73205236	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS3	NM_014243	exon5	c.837delC	p.N279fs	.	.	181.0	11.0	236.0	0.0	.	164	.	.	Atlas-INDEL
PAN2	9924	hgsc.bcm.edu	hg19	12	56716892	56716892	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAN2	NM_001127460	exon17	c.2460delC	p.N820fs	.	.	150.0	10.0	188.0	0.0	.	107	.	.	Atlas-INDEL
ACTN3	89	hgsc.bcm.edu	hg19	11	66330266	66330266	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACTN3	NM_001258371	exon20	c.2518-2G>-	.	.	.	227.0	15.0	316.0	0.0	.	27	.	.	Atlas-INDEL
CLEC4A	50856	hgsc.bcm.edu	hg19	12	8289428	8289428	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLEC4A	NM_016184	exon5	c.494delT	p.V165fs	.	.	176.0	11.0	274.0	0.0	.	28	.	.	Atlas-INDEL
PRRC2A	7916	hgsc.bcm.edu	hg19	6	31602310	31602310	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRRC2A	NM_004638	exon20	c.4910delC	p.P1637fs	.	.	110.0	10.0	125.0	0.0	.	152	.	.	Atlas-INDEL
SPAG17	200162	hgsc.bcm.edu	hg19	1	118583387	118583387	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	SPAG17,mouth,carcinoma,0,1	SPAG17	NM_206996	exon22	c.3133delC	p.Q1045fs	.	.	200.0	13.0	284.0	0.0	.	263	.	.	Atlas-INDEL
ASCC3	10973	hgsc.bcm.edu	hg19	6	101086535	101086535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ASCC3	NM_006828	exon25	c.4065delG	p.K1355fs	.	.	165.0	11.0	233.0	0.0	.	205	.	.	Atlas-INDEL
SLC39A12	221074	hgsc.bcm.edu	hg19	10	18331679	18331679	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC39A12	NM_001145195	exon13	c.1992delG	p.M664fs	.	.	146.0	10.0	151.0	0.0	.	181	.	.	Atlas-INDEL
LMBRD1	55788	hgsc.bcm.edu	hg19	6	70500277	70500277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	LMBRD1,NS,carcinoma,0,1	LMBRD1	NM_018368	exon2	c.158delC	p.S53fs	.	.	123.0	10.0	186.0	0.0	.	61	.	.	Atlas-INDEL
CEP128	145508	hgsc.bcm.edu	hg19	14	81307070	81307070	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP128	NM_152446	exon9	c.806delC	p.A269fs	.	.	180.0	11.0	209.0	0.0	.	146	.	.	Atlas-INDEL
EDEM3	80267	hgsc.bcm.edu	hg19	1	184680896	184680896	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EDEM3	NM_025191	exon15	c.1653delT	p.N551fs	.	.	163.0	11.0	130.0	0.0	.	63	.	.	Atlas-INDEL
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161532936	161532936	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP3K4	NM_005922	exon24	c.4464delC	p.L1488fs	.	.	298.0	18.0	392.0	0.0	.	364	.	.	Atlas-INDEL
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74901809	74901809	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001199327	exon20	c.2120delA	p.D707fs	.	.	235.0	16.0	272.0	0.0	.	.	.	.	Atlas-INDEL
OR5T2	219464	hgsc.bcm.edu	hg19	11	55999651	55999651	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR5T2	NM_001004746	exon1	c.1012delG	p.D338fs	.	.	155.0	10.0	160.0	0.0	.	107	.	.	Atlas-INDEL
RBM33	155435	hgsc.bcm.edu	hg19	7	155537920	155537920	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBM33	NM_053043	exon14	c.2602delC	p.Q868fs	.	.	225.0	15.0	258.0	0.0	.	157	.	.	Atlas-INDEL
TLK1	9874	hgsc.bcm.edu	hg19	2	171923383	171923383	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLK1	NM_001136555	exon1	c.12delA	p.L4fs	.	.	167.0	11.0	229.0	0.0	.	134	.	.	Atlas-INDEL
TULP4	56995	hgsc.bcm.edu	hg19	6	158923160	158923160	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	TULP4	NM_020245	exon13	c.2464delG	p.A822fs	.	.	147.0	11.0	176.0	0.0	.	137	.	.	Atlas-INDEL
RBM46	166863	hgsc.bcm.edu	hg19	4	155720297	155720297	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBM46	NM_144979	exon4	c.982delG	p.E328fs	.	.	198.0	12.0	226.0	0.0	.	76	.	.	Atlas-INDEL
ABHD5	51099	hgsc.bcm.edu	hg19	3	43753215	43753215	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABHD5	NM_016006	exon4	c.520delA	p.I174fs	.	.	151.0	11.0	211.0	0.0	.	33	.	.	Atlas-INDEL
ABCF2	10061	hgsc.bcm.edu	hg19	7	150923507	150923507	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCF2	NM_005692	exon2	c.39delG	p.K13fs	.	.	202.0	13.0	202.0	0.0	.	54	.	.	Atlas-INDEL
PROCA1	147011	hgsc.bcm.edu	hg19	17	27030897	27030897	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PROCA1	NM_152465	exon4	c.691delG	p.A231fs	.	.	237.0	15.0	311.0	0.0	.	28	.	.	Atlas-INDEL
MFAP1	4236	hgsc.bcm.edu	hg19	15	44109627	44109627	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MFAP1	NM_005926	exon2	c.100delG	p.V34X	.	.	378.0	23.0	482.0	0.0	.	36	.	.	Atlas-INDEL
FASTK	10922	hgsc.bcm.edu	hg19	7	150775131	150775131	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTK	NM_006712	exon5	c.875delT	p.L292fs	.	.	187.0	12.0	196.0	0.0	.	29	.	.	Atlas-INDEL
ATP1A3	478	hgsc.bcm.edu	hg19	19	42479905	42479905	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP1A3	NM_001256214	exon16	c.2179delG	p.A727fs	.	.	165.0	12.0	215.0	0.0	.	117	.	.	Atlas-INDEL
UPF1	5976	hgsc.bcm.edu	hg19	19	18971165	18971165	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UPF1	NM_002911	exon16	c.2217delG	p.W739fs	.	.	175.0	11.0	269.0	0.0	.	88	.	.	Atlas-INDEL
ITGA11	22801	hgsc.bcm.edu	hg19	15	68624271	68624271	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGA11	NM_001004439	exon14	c.1697delT	p.L566fs	.	.	164.0	10.0	249.0	0.0	.	110	.	.	Atlas-INDEL
PHLPP2	23035	hgsc.bcm.edu	hg19	16	71724608	71724608	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHLPP2	NM_015020	exon3	c.424delC	p.P142fs	.	.	144.0	10.0	181.0	0.0	.	96	.	.	Atlas-INDEL
DERL1	79139	hgsc.bcm.edu	hg19	8	124031435	124031435	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DERL1	NM_001134671	exon8	c.557+1T>-	.	.	.	182.0	11.0	216.0	0.0	.	27	.	.	Atlas-INDEL
CCDC169	728591	hgsc.bcm.edu	hg19	13	36805370	36805370	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC169	NM_001144981	exon8	c.606delG	p.K202fs	.	.	219.0	14.0	332.0	0.0	.	20	.	.	Atlas-INDEL
ABCB8	11194	hgsc.bcm.edu	hg19	7	150742395	150742395	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCB8	NM_007188	exon16	c.2115delC	p.P705fs	.	.	159.0	10.0	132.0	0.0	.	65	.	.	Atlas-INDEL
NEBL	10529	hgsc.bcm.edu	hg19	10	21178796	21178796	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEBL	NM_006393	exon3	c.237delT	p.N79fs	.	.	159.0	11.0	217.0	0.0	.	199	.	.	Atlas-INDEL
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56994135	56994135	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BAZ2A	NM_013449	exon24	c.4749delG	p.L1583fs	.	.	129.0	10.0	169.0	0.0	.	263	.	.	Atlas-INDEL
PDILT	204474	hgsc.bcm.edu	hg19	16	20387460	20387460	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDILT	NM_174924	exon4	c.474delG	p.L158fs	.	.	132.0	10.0	221.0	0.0	.	120	.	.	Atlas-INDEL
IGF1R	3480	hgsc.bcm.edu	hg19	15	99459962	99459962	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IGF1R	NM_000875	exon10	c.2057delA	p.N686fs	.	.	165.0	10.0	220.0	0.0	.	147	.	.	Atlas-INDEL
TSPYL6	388951	hgsc.bcm.edu	hg19	2	54482889	54482889	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPYL6	NM_001003937	exon1	c.401delC	p.A134fs	.	.	104.0	10.0	116.0	0.0	.	54	.	.	Atlas-INDEL
TFEB	7942	hgsc.bcm.edu	hg19	6	41655721	41655721	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFEB	NM_001167827	exon5	c.638delA	p.Q213fs	.	.	205.0	14.0	253.0	0.0	.	37	.	.	Atlas-INDEL
FAM8A1	51439	hgsc.bcm.edu	hg19	6	17608468	17608468	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM8A1	NM_016255	exon5	c.1139delC	p.S380fs	.	.	172.0	11.0	211.0	0.0	.	26	.	.	Atlas-INDEL
PRG4	10216	hgsc.bcm.edu	hg19	1	186282017	186282017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRG4	NM_005807	exon12	c.4107delC	p.A1369fs	.	.	193.0	13.0	147.0	0.0	.	259	.	.	Atlas-INDEL
RBFOX2	23543	hgsc.bcm.edu	hg19	22	36161472	36161472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBFOX2	NM_001082578	exon7	c.816delT	p.N272fs	.	.	183.0	11.0	243.0	0.0	.	62	.	.	Atlas-INDEL
TRPC1	7220	hgsc.bcm.edu	hg19	3	142443550	142443550	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRPC1	NM_001251845	exon1	c.148delC	p.L50fs	.	.	121.0	10.0	168.0	0.0	.	82	.	.	Atlas-INDEL
CASC5	57082	hgsc.bcm.edu	hg19	15	40920324	40920324	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CASC5	NM_170589	exon12	c.5510delT	p.I1837fs	.	.	172.0	11.0	272.0	0.0	.	269	.	.	Atlas-INDEL
SSR2	6746	hgsc.bcm.edu	hg19	1	155979390	155979390	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SSR2	NM_003145	exon6	c.494delT	p.L165fs	.	.	287.0	18.0	246.0	0.0	.	20	.	.	Atlas-INDEL
APOL2	23780	hgsc.bcm.edu	hg19	22	36623560	36623560	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOL2	NM_030882	exon5	c.905delC	p.A302fs	.	.	166.0	10.0	266.0	0.0	.	20	.	.	Atlas-INDEL
TMEM39B	55116	hgsc.bcm.edu	hg19	1	32542775	32542775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM39B	NM_018056	exon5	c.445delA	p.R149fs	.	.	152.0	11.0	225.0	0.0	.	66	.	.	Atlas-INDEL
DUOX1	53905	hgsc.bcm.edu	hg19	15	45446158	45446158	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DUOX1	NM_017434	exon28	c.3533delT	p.L1178fs	.	.	152.0	11.0	182.0	0.0	.	125	.	.	Atlas-INDEL
PIK3CB	5291	hgsc.bcm.edu	hg19	3	138461437	138461437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3CB	NM_006219	exon3	c.585delA	p.G195fs	.	.	151.0	12.0	216.0	0.0	.	103	.	.	Atlas-INDEL
ZNF689	115509	hgsc.bcm.edu	hg19	16	30616564	30616564	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF689	NM_138447	exon3	c.525delG	p.K175fs	.	.	166.0	11.0	235.0	0.0	.	48	.	.	Atlas-INDEL
ENG	2022	hgsc.bcm.edu	hg19	9	130592021	130592021	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENG	NM_001114753	exon3	c.306delC	p.N102fs	.	.	157.0	10.0	204.0	0.0	.	44	.	.	Atlas-INDEL
VPS39	23339	hgsc.bcm.edu	hg19	15	42480005	42480005	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS39	NM_015289	exon6	c.393delG	p.K131fs	.	.	162.0	11.0	239.0	0.0	.	53	.	.	Atlas-INDEL
MLXIP	22877	hgsc.bcm.edu	hg19	12	122614541	122614541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLXIP	NM_014938	exon6	c.791delT	p.V264fs	.	.	157.0	10.0	216.0	0.0	.	46	.	.	Atlas-INDEL
SGCA	6442	hgsc.bcm.edu	hg19	17	48245832	48245832	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SGCA	NM_001135697	exon5	c.482delT	p.L161fs	.	.	163.0	12.0	232.0	0.0	.	35	.	.	Atlas-INDEL
THG1L	54974	hgsc.bcm.edu	hg19	5	157160024	157160024	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THG1L	NM_017872	exon2	c.339delG	p.R113fs	.	.	171.0	11.0	247.0	0.0	.	31	.	.	Atlas-INDEL
ZYG11B	79699	hgsc.bcm.edu	hg19	1	53287272	53287272	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZYG11B	NM_024646	exon14	c.2205delT	p.C735X	.	.	222.0	15.0	276.0	0.0	.	61	.	.	Atlas-INDEL
COL11A2	1302	hgsc.bcm.edu	hg19	6	33136315	33136315	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL11A2	NM_080680	exon54	c.3942delA	p.P1314fs	.	.	119.0	10.0	142.0	0.0	.	124	.	.	Atlas-INDEL
SLC13A2	9058	hgsc.bcm.edu	hg19	17	26817514	26817514	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC13A2	NM_001145975	exon3	c.420delC	p.F140fs	.	.	148.0	11.0	223.0	0.0	.	125	.	.	Atlas-INDEL
STXBP5	134957	hgsc.bcm.edu	hg19	6	147648266	147648266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STXBP5	NM_139244	exon18	c.1933delG	p.V645fs	.	.	140.0	12.0	198.0	0.0	.	163	.	.	Atlas-INDEL
PMS1	5378	hgsc.bcm.edu	hg19	2	190719401	190719401	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PMS1	NM_001128144	exon9	c.1402delG	p.E468fs	.	.	121.0	10.0	169.0	0.0	.	78	.	.	Atlas-INDEL
NOM1	64434	hgsc.bcm.edu	hg19	7	156755794	156755794	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOM1	NM_138400	exon6	c.1835delT	p.V612fs	.	.	155.0	12.0	129.0	0.0	.	73	.	.	Atlas-INDEL
CRYBB3	1417	hgsc.bcm.edu	hg19	22	25603032	25603032	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CRYBB3	NM_004076	exon6	c.488delT	p.L163fs	.	.	139.0	10.0	212.0	0.0	.	13	.	.	Atlas-INDEL
MGA	23269	hgsc.bcm.edu	hg19	15	42054541	42054541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	MGA	NM_001164273	exon22	c.7724delG	p.R2575fs	.	.	155.0	10.0	248.0	0.0	.	264	.	.	Atlas-INDEL
FAM83B	222584	hgsc.bcm.edu	hg19	6	54806060	54806060	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM83B	NM_001010872	exon5	c.2290delT	p.S764fs	.	.	77.0	10.0	126.0	0.0	.	186	.	.	Atlas-INDEL
CYP4B1	1580	hgsc.bcm.edu	hg19	1	47284400	47284400	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP4B1	NM_001099772	exon12	c.1452delG	p.L484fs	.	.	166.0	10.0	245.0	0.0	.	81	.	.	Atlas-INDEL
EYS	346007	hgsc.bcm.edu	hg19	6	65301367	65301367	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	EYS_ENST00000370621,NS,carcinoma,0,1	EYS	NM_001142800	exon26	c.4394delC	p.A1465fs	.	.	157.0	10.0	266.0	0.0	.	527	.	.	Atlas-INDEL
RAPGEF4	11069	hgsc.bcm.edu	hg19	2	173866030	173866030	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAPGEF4	NM_007023	exon17	c.1615delG	p.V539fs	.	.	118.0	10.0	215.0	0.0	.	103	.	.	Atlas-INDEL
BTBD8	284697	hgsc.bcm.edu	hg19	1	92568057	92568057	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BTBD8	NM_183242	exon3	c.374delT	p.I125fs	.	.	150.0	12.0	180.0	0.0	.	32	.	.	Atlas-INDEL
NPC1	4864	hgsc.bcm.edu	hg19	18	21141327	21141327	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPC1	NM_000271	exon5	c.629delC	p.S210X	.	.	127.0	10.0	180.0	0.0	.	114	.	.	Atlas-INDEL
SLIT1	6585	hgsc.bcm.edu	hg19	10	98766401	98766401	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLIT1	NM_003061	exon32	c.3419delC	p.A1140fs	.	.	137.0	10.0	190.0	0.0	.	154	.	.	Atlas-INDEL
ABCA5	23461	hgsc.bcm.edu	hg19	17	67285378	67285378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ABCA5,NS,carcinoma,0,1	ABCA5	NM_018672	exon13	c.1843delT	p.L615X	.	.	199.0	12.0	217.0	0.0	.	162	.	.	Atlas-INDEL
MPV17L2	84769	hgsc.bcm.edu	hg19	19	18305819	18305819	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MPV17L2	NM_032683	exon4	c.486delG	p.V162fs	.	.	137.0	10.0	190.0	0.0	.	12	.	.	Atlas-INDEL
NAV3	89795	hgsc.bcm.edu	hg19	12	78443808	78443808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NAV3	NM_014903	exon10	c.2058delT	p.V686fs	.	.	153.0	13.0	177.0	0.0	.	506	.	.	Atlas-INDEL
SUV420H1	51111	hgsc.bcm.edu	hg19	11	67934514	67934514	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUV420H1	NM_017635	exon10	c.1110delT	p.N370fs	.	.	206.0	15.0	254.0	0.0	.	125	.	.	Atlas-INDEL
STH	246744	hgsc.bcm.edu	hg19	17	44076686	44076686	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STH	NM_001007532	exon1	c.40delG	p.A14fs	.	.	205.0	13.0	288.0	0.0	.	14	.	.	Atlas-INDEL
RARB	5915	hgsc.bcm.edu	hg19	3	25470337	25470337	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RARB	NM_000965	exon1	c.114delT	p.S38fs	.	.	142.0	10.0	213.0	0.0	.	123	.	.	Atlas-INDEL
ZNF142	7701	hgsc.bcm.edu	hg19	2	219509322	219509322	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF142	NM_001105537	exon8	c.1918delC	p.P640fs	.	.	158.0	11.0	179.0	0.0	.	190	.	.	Atlas-INDEL
PTCD2	79810	hgsc.bcm.edu	hg19	5	71648518	71648518	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCD2	NM_024754	exon9	c.878delT	p.L293fs	.	.	199.0	12.0	301.0	0.0	.	31	.	.	Atlas-INDEL
PDZD4	57595	hgsc.bcm.edu	hg19	X	153073936	153073936	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDZD4	NM_032512	exon2	c.176delA	p.D59fs	.	.	162.0	10.0	241.0	0.0	.	67	.	.	Atlas-INDEL
LAMA5	3911	hgsc.bcm.edu	hg19	20	60894843	60894843	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA5	NM_005560	exon51	c.6769delA	p.T2257fs	.	.	104.0	10.0	124.0	0.0	.	268	.	.	Atlas-INDEL
EME1	146956	hgsc.bcm.edu	hg19	17	48452975	48452975	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EME1	NM_152463	exon2	c.405delG	p.W135X	.	.	173.0	11.0	257.0	0.0	.	39	.	.	Atlas-INDEL
RIPK3	11035	hgsc.bcm.edu	hg19	14	24808407	24808407	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIPK3	NM_006871	exon3	c.286delT	p.F96fs	.	.	162.0	10.0	195.0	0.0	.	43	.	.	Atlas-INDEL
FAM71A	149647	hgsc.bcm.edu	hg19	1	212799568	212799568	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM71A	NM_153606	exon1	c.1348delA	p.R450fs	.	.	141.0	12.0	107.0	0.0	.	87	.	.	Atlas-INDEL
PELP1	27043	hgsc.bcm.edu	hg19	17	4576386	4576386	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PELP1	NM_014389	exon16	c.1901delG	p.R634fs	.	.	166.0	11.0	178.0	0.0	.	102	.	.	Atlas-INDEL
SLCO3A1	28232	hgsc.bcm.edu	hg19	15	92706012	92706012	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO3A1	NM_013272	exon10	c.1779delC	p.F593fs	.	.	211.0	13.0	329.0	0.0	.	84	.	.	Atlas-INDEL
FILIP1L	11259	hgsc.bcm.edu	hg19	3	99568351	99568351	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FILIP1L	NM_001042459	exon5	c.2170delG	p.E724fs	.	.	199.0	12.0	355.0	0.0	.	154	.	.	Atlas-INDEL
PROL1	58503	hgsc.bcm.edu	hg19	4	71275514	71275514	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PROL1	NM_021225	exon3	c.468delT	p.N156fs	.	.	291.0	24.0	456.0	0.0	.	46	.	.	Atlas-INDEL
RHOXF2	84528	hgsc.bcm.edu	hg19	X	119210952	119210952	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RHOXF2	NM_032498	exon2	c.382delC	p.L128fs	.	.	174.0	11.0	214.0	0.0	.	19	.	.	Atlas-INDEL
ACO1	48	hgsc.bcm.edu	hg19	9	32418340	32418340	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACO1	NM_002197	exon6	c.488delC	p.A163fs	.	.	193.0	12.0	252.0	0.0	.	149	.	.	Atlas-INDEL
KIFC2	90990	hgsc.bcm.edu	hg19	8	145692926	145692926	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIFC2	NM_145754	exon5	c.527delT	p.L176fs	.	.	161.0	10.0	146.0	0.0	.	53	.	.	Atlas-INDEL
CCDC174	51244	hgsc.bcm.edu	hg19	3	14708332	14708332	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_016474	exon7	c.601delG	p.E201fs	.	.	153.0	10.0	228.0	0.0	.	.	.	.	Atlas-INDEL
SNRPB2	6629	hgsc.bcm.edu	hg19	20	16721542	16721542	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNRPB2	NM_003092	exon7	c.569delC	p.A190fs	.	.	152.0	10.0	193.0	0.0	.	12	.	.	Atlas-INDEL
HMGB4	127540	hgsc.bcm.edu	hg19	1	34329847	34329847	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HMGB4	NM_145205	exon2	c.54delC	p.H18fs	.	.	159.0	10.0	263.0	0.0	.	27	.	.	Atlas-INDEL
DZIP1L	199221	hgsc.bcm.edu	hg19	3	137787113	137787113	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DZIP1L	NM_173543	exon13	c.1713delA	p.P571fs	.	.	191.0	13.0	258.0	0.0	.	88	.	.	Atlas-INDEL
TP53I13	90313	hgsc.bcm.edu	hg19	17	27899664	27899664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TP53I13	NM_138349	exon6	c.1017delC	p.R339fs	.	.	155.0	11.0	204.0	0.0	.	17	.	.	Atlas-INDEL
COL24A1	255631	hgsc.bcm.edu	hg19	1	86313395	86313395	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL24A1	NM_152890	exon39	c.3416delT	p.I1139fs	.	.	178.0	11.0	209.0	0.0	.	202	.	.	Atlas-INDEL
TACC2	10579	hgsc.bcm.edu	hg19	10	123970853	123970853	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TACC2	NM_206862	exon9	c.6912delG	p.M2304fs	.	.	244.0	15.0	243.0	0.0	.	271	.	.	Atlas-INDEL
SLCO1B3	28234	hgsc.bcm.edu	hg19	12	21054325	21054325	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1B3	NM_019844	exon15	c.1788delT	p.D596fs	.	.	200.0	14.0	244.0	0.0	.	151	.	.	Atlas-INDEL
DDB2	1643	hgsc.bcm.edu	hg19	11	47259439	47259439	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDB2	NM_000107	exon8	c.1074delT	p.D358fs	.	.	122.0	10.0	232.0	0.0	.	31	.	.	Atlas-INDEL
RNF123	63891	hgsc.bcm.edu	hg19	3	49740083	49740083	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNF123	NM_022064	exon20	c.1646delG	p.C549fs	.	.	180.0	11.0	250.0	0.0	.	100	.	.	Atlas-INDEL
SOGA2	23255	hgsc.bcm.edu	hg19	18	8783591	8783591	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_015210	exon6	c.480delC	p.R160fs	.	.	187.0	13.0	253.0	0.0	.	.	.	.	Atlas-INDEL
MARCH5	54708	hgsc.bcm.edu	hg19	10	94110929	94110929	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MARCH5	NM_017824	exon6	c.801delC	p.R267fs	.	.	166.0	10.0	206.0	0.0	.	28	.	.	Atlas-INDEL
CTAG2	30848	hgsc.bcm.edu	hg19	X	153880814	153880814	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CTAG2	NM_020994	exon2	c.362delC	p.A121fs	.	.	110.0	10.0	139.0	0.0	.	88	.	.	Atlas-INDEL
SEMA3F	6405	hgsc.bcm.edu	hg19	3	50225339	50225339	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEMA3F	NM_004186	exon19	c.2148delA	p.P716fs	.	.	261.0	16.0	315.0	0.0	.	62	.	.	Atlas-INDEL
MDGA1	266727	hgsc.bcm.edu	hg19	6	37605207	37605207	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MDGA1	NM_153487	exon17	c.2806delT	p.C936fs	.	.	210.0	13.0	284.0	0.0	.	104	.	.	Atlas-INDEL
SLCO4C1	353189	hgsc.bcm.edu	hg19	5	101595975	101595975	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO4C1	NM_180991	exon6	c.1071delT	p.N357fs	.	.	180.0	11.0	242.0	0.0	.	113	.	.	Atlas-INDEL
GUCY2C	2984	hgsc.bcm.edu	hg19	12	14825857	14825857	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GUCY2C	NM_004963	exon9	c.1121delA	p.D374fs	.	.	177.0	11.0	246.0	0.0	.	126	.	.	Atlas-INDEL
DHX29	54505	hgsc.bcm.edu	hg19	5	54565369	54565369	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHX29	NM_019030	exon21	c.3167delT	p.I1056fs	.	.	181.0	11.0	242.0	0.0	.	116	.	.	Atlas-INDEL
IL18R1	8809	hgsc.bcm.edu	hg19	2	103013192	103013192	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL18R1	NM_003855	exon10	c.1471delC	p.L491fs	.	.	307.0	21.0	449.0	0.0	.	72	.	.	Atlas-INDEL
KIAA1468	57614	hgsc.bcm.edu	hg19	18	59895676	59895676	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1468	NM_020854	exon8	c.1292delG	p.G431fs	.	.	137.0	14.0	215.0	0.0	.	93	.	.	Atlas-INDEL
SLCO1B1	10599	hgsc.bcm.edu	hg19	12	21375253	21375253	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1B1	NM_006446	exon13	c.1701delG	p.L567fs	.	.	182.0	13.0	252.0	0.0	.	151	.	.	Atlas-INDEL
EXOSC9	5393	hgsc.bcm.edu	hg19	4	122737569	122737569	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOSC9	NM_001034194	exon12	c.1252delA	p.I418fs	.	.	261.0	20.0	274.0	0.0	.	51	.	.	Atlas-INDEL
GDA	9615	hgsc.bcm.edu	hg19	9	74860174	74860174	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDA	NM_001242505	exon12	c.1245delC	p.D415fs	.	.	131.0	13.0	147.0	0.0	.	113	.	.	Atlas-INDEL
RFT1	91869	hgsc.bcm.edu	hg19	3	53126003	53126003	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFT1	NM_052859	exon13	c.1543delA	p.T515fs	.	.	209.0	13.0	300.0	0.0	.	34	.	.	Atlas-INDEL
TBC1D12	23232	hgsc.bcm.edu	hg19	10	96269902	96269902	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TBC1D12	NM_015188	exon8	c.1654delT	p.S552fs	.	.	148.0	11.0	184.0	0.0	.	51	.	.	Atlas-INDEL
WBP11	51729	hgsc.bcm.edu	hg19	12	14943574	14943574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WBP11	NM_016312	exon10	c.1126delG	p.E376fs	.	.	163.0	10.0	246.0	0.0	.	66	.	.	Atlas-INDEL
ENAM	10117	hgsc.bcm.edu	hg19	4	71501578	71501578	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENAM	NM_031889	exon7	c.500delT	p.F167fs	.	.	142.0	11.0	210.0	0.0	.	140	.	.	Atlas-INDEL
TYW3	127253	hgsc.bcm.edu	hg19	1	75229675	75229675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TYW3	NM_138467	exon6	c.657delG	p.K219fs	.	.	243.0	17.0	288.0	0.0	.	36	.	.	Atlas-INDEL
TBX3	6926	hgsc.bcm.edu	hg19	12	115118903	115118903	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,2	TBX3	NM_005996	exon2	c.439delG	p.A147fs	.	.	182.0	11.0	244.0	0.0	.	106	.	.	Atlas-INDEL
CUX2	23316	hgsc.bcm.edu	hg19	12	111785948	111785948	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CUX2,NS,carcinoma,0,1	CUX2	NM_015267	exon22	c.4279delG	p.A1427fs	.	.	166.0	10.0	223.0	0.0	.	145	.	.	Atlas-INDEL
HAGH	3029	hgsc.bcm.edu	hg19	16	1866951	1866951	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HAGH	NM_005326	exon7	c.691delG	p.A231fs	.	.	165.0	10.0	188.0	0.0	.	20	.	.	Atlas-INDEL
CHPF	79586	hgsc.bcm.edu	hg19	2	220405010	220405010	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHPF	NM_024536	exon4	c.1424delA	p.Q475fs	.	.	214.0	15.0	317.0	0.0	.	56	.	.	Atlas-INDEL
COL16A1	1307	hgsc.bcm.edu	hg19	1	32134408	32134408	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL16A1	NM_001856	exon50	c.3245delA	p.E1082fs	.	.	132.0	10.0	192.0	0.0	.	137	.	.	Atlas-INDEL
PTPRC	5788	hgsc.bcm.edu	hg19	1	198717290	198717290	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRC	NM_002838	exon27	c.2899delG	p.E967fs	.	.	134.0	11.0	95.0	0.0	.	229	.	.	Atlas-INDEL
FABP12	646486	hgsc.bcm.edu	hg19	8	82441805	82441805	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FABP12	NM_001105281	exon2	c.115delC	p.P39fs	.	.	175.0	11.0	173.0	0.0	.	20	.	.	Atlas-INDEL
UGP2	7360	hgsc.bcm.edu	hg19	2	64084969	64084969	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGP2	NM_006759	exon3	c.153delC	p.T51fs	.	.	106.0	10.0	134.0	0.0	.	38	.	.	Atlas-INDEL
PARP9	83666	hgsc.bcm.edu	hg19	3	122274440	122274440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARP9	NM_001146102	exon4	c.684delT	p.N228fs	.	.	162.0	10.0	179.0	0.0	.	72	.	.	Atlas-INDEL
REPS2	9185	hgsc.bcm.edu	hg19	X	17024379	17024379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	REPS2	NM_001080975	exon2	c.308delA	p.Y103fs	.	.	153.0	10.0	167.0	0.0	.	76	.	.	Atlas-INDEL
KBTBD12	166348	hgsc.bcm.edu	hg19	3	127642893	127642893	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KBTBD12	NM_207335	exon1	c.988delG	p.E330fs	.	.	108.0	11.0	177.0	0.0	.	41	.	.	Atlas-INDEL
PTCH2	8643	hgsc.bcm.edu	hg19	1	45296538	45296538	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCH2	NM_003738	exon6	c.796delA	p.N266fs	.	.	163.0	11.0	241.0	0.0	.	96	.	.	Atlas-INDEL
MYO5A	4644	hgsc.bcm.edu	hg19	15	52688534	52688534	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYO5A	NM_000259	exon11	c.1381delC	p.L461fs	.	.	179.0	12.0	260.0	0.0	.	145	.	.	Atlas-INDEL
FAM122A	116224	hgsc.bcm.edu	hg19	9	71395729	71395729	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM122A	NM_138333	exon1	c.648delA	p.R216fs	.	.	165.0	11.0	227.0	0.0	.	14	.	.	Atlas-INDEL
UBE2O	63893	hgsc.bcm.edu	hg19	17	74388089	74388089	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBE2O	NM_022066	exon16	c.3053delA	p.H1018fs	.	.	178.0	13.0	126.0	0.0	.	207	.	.	Atlas-INDEL
FAM171A1	221061	hgsc.bcm.edu	hg19	10	15255681	15255681	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM171A1	NM_001010924	exon8	c.1907delA	p.Q636fs	.	.	165.0	10.0	205.0	0.0	.	252	.	.	Atlas-INDEL
DSG3	1830	hgsc.bcm.edu	hg19	18	29037066	29037066	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSG3	NM_001944	exon3	c.194delC	p.S65X	.	.	126.0	11.0	157.0	0.0	.	172	.	.	Atlas-INDEL
LPPR2	0	hgsc.bcm.edu	hg19	19	11470601	11470601	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LPPR2	NM_022737	exon5	c.359delG	p.S120fs	.	.	123.0	10.0	173.0	0.0	.	21	.	.	Atlas-INDEL
SEPT2	4735	hgsc.bcm.edu	hg19	2	242275390	242275390	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEPT2	NM_006155	exon5	c.218-1A>-	.	.	.	143.0	13.0	207.0	0.0	.	33	.	.	Atlas-INDEL
CACNG3	10368	hgsc.bcm.edu	hg19	16	24358078	24358078	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CACNG3,NS,carcinoma,0,1	CACNG3	NM_006539	exon2	c.234delG	p.K78fs	.	.	112.0	11.0	174.0	0.0	.	112	.	.	Atlas-INDEL
PCDHB14	56122	hgsc.bcm.edu	hg19	5	140603423	140603423	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHB14	NM_018934	exon1	c.345delG	p.Q115fs	.	.	192.0	12.0	225.0	0.0	.	132	.	.	Atlas-INDEL
PLIN4	729359	hgsc.bcm.edu	hg19	19	4512723	4512723	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLIN4	NM_001080400	exon3	c.1208delC	p.A403fs	.	.	228.0	14.0	334.0	0.0	.	191	.	.	Atlas-INDEL
MUC5B	727897	hgsc.bcm.edu	hg19	11	1276641	1276641	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC5B	NM_002458	exon37	c.15918delG	p.V5306fs	.	.	142.0	10.0	249.0	0.0	.	473	.	.	Atlas-INDEL
BTG3	10950	hgsc.bcm.edu	hg19	21	18981340	18981340	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BTG3	NM_006806	exon2	c.124delT	p.Y42fs	.	.	166.0	11.0	153.0	0.0	.	27	.	.	Atlas-INDEL
RANBP6	26953	hgsc.bcm.edu	hg19	9	6015153	6015153	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RANBP6	NM_012416	exon1	c.456delT	p.N152fs	.	.	159.0	10.0	181.0	0.0	.	127	.	.	Atlas-INDEL
RYR2	6262	hgsc.bcm.edu	hg19	1	237778080	237778080	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RYR2	NM_001035	exon37	c.5651delA	p.K1884fs	.	.	182.0	13.0	154.0	0.0	.	1273	.	.	Atlas-INDEL
FRY	10129	hgsc.bcm.edu	hg19	13	32722055	32722055	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FRY	NM_023037	exon13	c.1362delC	p.I454fs	.	.	174.0	12.0	225.0	0.0	.	312	.	.	Atlas-INDEL
DNAJC10	54431	hgsc.bcm.edu	hg19	2	183582853	183582865	+	Frame_Shift_Del	DEL	TTGAAAAGGATCA	TTGAAAAGGATCA	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TTGAAAAGGATCA	TTGAAAAGGATCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJC10	NM_001271581	exon3	c.39_51del	p.13_17del	.	.	79.0	13.0	156.0	0.0	.	76	.	.	Atlas-INDEL
KDM2B	84678	hgsc.bcm.edu	hg19	12	121880092	121880092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KDM2B	NM_032590	exon19	c.3153delG	p.P1051fs	.	.	178.0	13.0	171.0	0.0	.	218	.	.	Atlas-INDEL
FAM63A	55793	hgsc.bcm.edu	hg19	1	150974245	150974245	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM63A	NM_001163258	exon4	c.612delG	p.P204fs	.	.	192.0	15.0	179.0	0.0	.	42	.	.	Atlas-INDEL
ANO1	55107	hgsc.bcm.edu	hg19	11	70033894	70033894	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANO1	NM_018043	exon26	c.2744delT	p.I915fs	.	.	180.0	11.0	231.0	0.0	.	156	.	.	Atlas-INDEL
WNK1	65125	hgsc.bcm.edu	hg19	12	987482	987482	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNK1	NM_213655	exon12	c.3821delA	p.Q1274fs	.	.	216.0	13.0	256.0	0.0	.	403	.	.	Atlas-INDEL
FAM71B	153745	hgsc.bcm.edu	hg19	5	156592606	156592606	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM71B	NM_130899	exon1	c.575delA	p.D192fs	.	.	212.0	14.0	354.0	0.0	.	145	.	.	Atlas-INDEL
CHD6	84181	hgsc.bcm.edu	hg19	20	40084446	40084446	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD6	NM_032221	exon19	c.3004delG	p.A1002fs	.	.	202.0	13.0	274.0	0.0	.	312	.	.	Atlas-INDEL
ZSCAN4	201516	hgsc.bcm.edu	hg19	19	58189897	58189897	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZSCAN4	NM_152677	exon5	c.925delC	p.Q309fs	.	.	143.0	11.0	213.0	0.0	.	72	.	.	Atlas-INDEL
FLT3	2322	hgsc.bcm.edu	hg19	13	28626770	28626770	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FLT3	NM_004119	exon5	c.527delT	p.M176fs	.	.	152.0	10.0	174.0	0.0	.	15525	.	.	Atlas-INDEL
USH2A	7399	hgsc.bcm.edu	hg19	1	216019331	216019331	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USH2A	NM_206933	exon45	c.8891delG	p.W2964X	.	.	215.0	14.0	189.0	0.0	.	1168	.	.	Atlas-INDEL
DSP	1832	hgsc.bcm.edu	hg19	6	7574928	7574928	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSP	NM_004415	exon17	c.2335delC	p.Q779fs	.	.	134.0	10.0	216.0	0.0	.	306	.	.	Atlas-INDEL
COL28A1	340267	hgsc.bcm.edu	hg19	7	7559697	7559697	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL28A1	NM_001037763	exon6	c.810delC	p.N270fs	.	.	231.0	15.0	140.0	0.0	.	113	.	.	Atlas-INDEL
TMEM130	222865	hgsc.bcm.edu	hg19	7	98460876	98460876	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM130	NM_152913	exon2	c.234delG	p.P78fs	.	.	174.0	12.0	180.0	0.0	.	54	.	.	Atlas-INDEL
ATG16L1	55054	hgsc.bcm.edu	hg19	2	234178690	234178690	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATG16L1	NM_017974	exon6	c.683delC	p.A228fs	.	.	249.0	15.0	287.0	0.0	.	83	.	.	Atlas-INDEL
ARCN1	372	hgsc.bcm.edu	hg19	11	118452086	118452086	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARCN1	NM_001655	exon2	c.128delG	p.G43fs	.	.	151.0	10.0	260.0	0.0	.	33	.	.	Atlas-INDEL
LGI1	9211	hgsc.bcm.edu	hg19	10	95552602	95552602	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	LGI1	NM_005097	exon6	c.605delG	p.G202fs	.	.	177.0	12.0	231.0	0.0	.	69	.	.	Atlas-INDEL
RREB1	6239	hgsc.bcm.edu	hg19	6	7232097	7232097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RREB1	NM_001003700	exon10	c.3764delT	p.F1255fs	.	.	180.0	11.0	246.0	0.0	.	242	.	.	Atlas-INDEL
TTLL6	284076	hgsc.bcm.edu	hg19	17	46846369	46846369	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTLL6	NM_001130918	exon15	c.2659delG	p.G887fs	.	.	204.0	13.0	246.0	0.0	.	113	.	.	Atlas-INDEL
CDC27	996	hgsc.bcm.edu	hg19	17	45209674	45209674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC27	NM_001114091	exon15	c.1999delG	p.A667fs	.	.	115.0	10.0	118.0	0.0	.	337	.	.	Atlas-INDEL
ERAP1	51752	hgsc.bcm.edu	hg19	5	96139154	96139154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERAP1	NM_001198541	exon2	c.477delC	p.F159fs	.	.	173.0	11.0	227.0	0.0	.	59	.	.	Atlas-INDEL
CCDC89	220388	hgsc.bcm.edu	hg19	11	85397087	85397087	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC89	NM_152723	exon1	c.88delC	p.L30X	.	.	176.0	11.0	237.0	0.0	.	45	.	.	Atlas-INDEL
CDK8	1024	hgsc.bcm.edu	hg19	13	26923240	26923240	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDK8	NM_001260	exon3	c.235delA	p.I79fs	.	.	182.0	11.0	251.0	0.0	.	61	.	.	Atlas-INDEL
FAT1	2195	hgsc.bcm.edu	hg19	4	187541324	187541324	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAT1	NM_005245	exon10	c.6417delG	p.K2139fs	.	.	168.0	11.0	177.0	0.0	.	500	.	.	Atlas-INDEL
MMP8	4317	hgsc.bcm.edu	hg19	11	102587087	102587087	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MMP8	NM_002424	exon6	c.849delG	p.L283fs	.	.	144.0	10.0	120.0	0.0	.	68	.	.	Atlas-INDEL
TMEM229B	161145	hgsc.bcm.edu	hg19	14	67940172	67940172	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM229B	NM_182526	exon3	c.470delT	p.L157fs	.	.	153.0	10.0	209.0	0.0	.	20	.	.	Atlas-INDEL
KIAA1609	57707	hgsc.bcm.edu	hg19	16	84520325	84520325	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1609	NM_020947	exon5	c.871delC	p.P291fs	.	.	138.0	10.0	244.0	0.0	.	39	.	.	Atlas-INDEL
PRKACB	5567	hgsc.bcm.edu	hg19	1	84679946	84679946	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKACB	NM_182948	exon9	c.1016delT	p.I339fs	.	.	131.0	13.0	165.0	0.0	.	174	.	.	Atlas-INDEL
ZNF77	58492	hgsc.bcm.edu	hg19	19	2934192	2934192	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF77	NM_021217	exon4	c.934delA	p.R312fs	.	.	180.0	12.0	258.0	0.0	.	47	.	.	Atlas-INDEL
HLA-DRB1	3123	hgsc.bcm.edu	hg19	6	32548050	32548050	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HLA-DRB1	NM_002124	exon6	c.764-2C>-	.	.	.	130.0	10.0	215.0	0.0	.	41	.	.	Atlas-INDEL
EYS	346007	hgsc.bcm.edu	hg19	6	66054028	66054028	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	EYS_ENST00000370621,NS,carcinoma,0,2	EYS	NM_001142801	exon10	c.1503delC	p.F501fs	.	.	170.0	11.0	217.0	0.0	.	527	.	.	Atlas-INDEL
CEP135	9662	hgsc.bcm.edu	hg19	4	56841104	56841104	+	Frame_Shift_Del	DEL	A	A	-	rs34965077		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CEP135,NS,carcinoma,0,1	CEP135	NM_025009	exon11	c.1441delG	p.E481fs	.	.	141.0	10.0	173.0	0.0	.	115	.	.	Atlas-INDEL
ZNF217	7764	hgsc.bcm.edu	hg19	20	52193620	52193620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF217	NM_006526	exon3	c.1684delG	p.D562fs	.	.	139.0	12.0	178.0	0.0	.	227	.	.	Atlas-INDEL
MLL	4297	hgsc.bcm.edu	hg19	11	118377153	118377153	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL	NM_001197104	exon27	c.10545delT	p.P3515fs	.	.	106.0	10.0	131.0	0.0	.	548	.	.	Atlas-INDEL
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120580649	120580649	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCN1L1	NM_006836	exon43	c.5593delG	p.G1865fs	.	.	195.0	12.0	290.0	0.0	.	207	.	.	Atlas-INDEL
KIF26B	55083	hgsc.bcm.edu	hg19	1	245848940	245848940	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF26B	NM_018012	exon12	c.2654delG	p.G885fs	.	.	341.0	21.0	238.0	0.0	.	343	.	.	Atlas-INDEL
SULF1	23213	hgsc.bcm.edu	hg19	8	70488249	70488249	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	SULF1	NM_001128205	exon6	c.216delT	p.H72fs	.	.	199.0	13.0	164.0	0.0	.	153	.	.	Atlas-INDEL
FEM1B	10116	hgsc.bcm.edu	hg19	15	68582064	68582064	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FEM1B	NM_015322	exon2	c.367delA	p.T123fs	.	.	161.0	11.0	260.0	0.0	.	38	.	.	Atlas-INDEL
AHI1	54806	hgsc.bcm.edu	hg19	6	135811800	135811800	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHI1	NM_001134832	exon4	c.97delC	p.L33X	.	.	212.0	13.0	277.0	0.0	.	81	.	.	Atlas-INDEL
FAM47B	170062	hgsc.bcm.edu	hg19	X	34961258	34961258	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM47B	NM_152631	exon1	c.309delA	p.L103fs	.	.	165.0	12.0	183.0	0.0	.	209	.	.	Atlas-INDEL
BIVM-ERCC5	0	hgsc.bcm.edu	hg19	13	103508419	103508419	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001204425	exon13	c.1846delG	p.E616fs	.	.	333.0	21.0	552.0	0.0	.	.	.	.	Atlas-INDEL
GRIN2C	2905	hgsc.bcm.edu	hg19	17	72838789	72838789	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIN2C	NM_000835	exon13	c.3488delC	p.A1163fs	.	.	165.0	10.0	160.0	0.0	.	144	.	.	Atlas-INDEL
USP47	55031	hgsc.bcm.edu	hg19	11	11970052	11970052	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP47	NM_017944	exon21	c.3090delT	p.L1030fs	.	.	159.0	10.0	162.0	0.0	.	91	.	.	Atlas-INDEL
RPAP1	26015	hgsc.bcm.edu	hg19	15	41819194	41819194	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPAP1	NM_015540	exon14	c.1820delC	p.A607fs	.	.	151.0	10.0	180.0	0.0	.	111	.	.	Atlas-INDEL
SLC27A5	10998	hgsc.bcm.edu	hg19	19	59010549	59010549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC27A5	NM_012254	exon8	c.1707delC	p.G569fs	.	.	168.0	11.0	249.0	0.0	.	58	.	.	Atlas-INDEL
RABEP1	9135	hgsc.bcm.edu	hg19	17	5268420	5268420	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABEP1	NM_004703	exon11	c.1671delG	p.V557fs	.	.	191.0	16.0	208.0	0.0	.	59	.	.	Atlas-INDEL
HOOK1	51361	hgsc.bcm.edu	hg19	1	60325886	60325886	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HOOK1	NM_015888	exon15	c.1417delG	p.E473fs	.	.	178.0	15.0	217.0	0.0	.	54	.	.	Atlas-INDEL
CPSF2	53981	hgsc.bcm.edu	hg19	14	92604666	92604666	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CPSF2	NM_017437	exon7	c.635delG	p.R212fs	.	.	347.0	23.0	437.0	0.0	.	63	.	.	Atlas-INDEL
FAM135B	51059	hgsc.bcm.edu	hg19	8	139151232	139151232	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	LOC51059,NS,carcinoma,0,2	FAM135B	NM_015912	exon18	c.3899delC	p.T1300fs	.	.	197.0	15.0	200.0	0.0	.	423	.	.	Atlas-INDEL
LRP1	4035	hgsc.bcm.edu	hg19	12	57556256	57556256	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRP1	NM_002332	exon14	c.2358delG	p.R786fs	.	.	118.0	10.0	185.0	0.0	.	428	.	.	Atlas-INDEL
MLL2	8085	hgsc.bcm.edu	hg19	12	49444268	49444268	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL2	NM_003482	exon11	c.3104delA	p.Q1035fs	.	.	223.0	15.0	310.0	0.0	.	1173	.	.	Atlas-INDEL
THUMPD1	55623	hgsc.bcm.edu	hg19	16	20749224	20749224	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THUMPD1	NM_017736	exon3	c.462delG	p.K154fs	.	.	193.0	14.0	240.0	0.0	.	33	.	.	Atlas-INDEL
C9orf131	138724	hgsc.bcm.edu	hg19	9	35042287	35042287	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C9orf131	NM_001040410	exon1	c.35delA	p.K12fs	.	.	148.0	11.0	170.0	0.0	.	71	.	.	Atlas-INDEL
DNHD1	144132	hgsc.bcm.edu	hg19	11	6568378	6568378	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNHD1	NM_144666	exon21	c.6208delC	p.Q2070fs	.	.	163.0	12.0	225.0	0.0	.	198	.	.	Atlas-INDEL
ETV4	2118	hgsc.bcm.edu	hg19	17	41605953	41605953	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ETV4	NM_001986	exon13	c.1390delG	p.A464fs	.	.	176.0	11.0	221.0	0.0	.	36	.	.	Atlas-INDEL
SEZ6L2	26470	hgsc.bcm.edu	hg19	16	29899871	29899871	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEZ6L2	NM_001243332	exon6	c.1030delA	p.S344fs	.	.	147.0	10.0	133.0	0.0	.	137	.	.	Atlas-INDEL
PLEKHO1	51177	hgsc.bcm.edu	hg19	1	150129661	150129661	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHO1	NM_016274	exon5	c.505delA	p.R169fs	.	.	141.0	10.0	130.0	0.0	.	37	.	.	Atlas-INDEL
MTIF2	4528	hgsc.bcm.edu	hg19	2	55473549	55473549	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MTIF2	NM_002453	exon10	c.1031delT	p.M344fs	.	.	143.0	11.0	252.0	0.0	.	64	.	.	Atlas-INDEL
TSPYL2	64061	hgsc.bcm.edu	hg19	X	53113779	53113779	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPYL2	NM_022117	exon2	c.859delA	p.I287fs	.	.	118.0	10.0	201.0	0.0	.	53	.	.	Atlas-INDEL
GP1BA	2811	hgsc.bcm.edu	hg19	17	4837331	4837331	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GP1BA	NM_000173	exon2	c.1431delA	p.T477fs	.	.	155.0	10.0	217.0	0.0	.	53	.	.	Atlas-INDEL
PKHD1	5314	hgsc.bcm.edu	hg19	6	51503672	51503672	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKHD1	NM_138694	exon64	c.11482delA	p.I3828fs	.	.	165.0	10.0	210.0	0.0	.	927	.	.	Atlas-INDEL
DNAJC13	23317	hgsc.bcm.edu	hg19	3	132175174	132175174	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJC13	NM_015268	exon10	c.1027delT	p.W343fs	.	.	162.0	10.0	243.0	0.0	.	253	.	.	Atlas-INDEL
WDR19	57728	hgsc.bcm.edu	hg19	4	39280220	39280220	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR19	NM_025132	exon36	c.3978delG	p.L1326fs	.	.	183.0	11.0	235.0	0.0	.	96	.	.	Atlas-INDEL
SPHK1	8877	hgsc.bcm.edu	hg19	17	74381231	74381231	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPHK1	NM_182965	exon1	c.44delT	p.L15fs	.	.	222.0	14.0	212.0	0.0	.	24	.	.	Atlas-INDEL
GDF5	8200	hgsc.bcm.edu	hg19	20	34025211	34025211	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDF5	NM_000557	exon1	c.499delA	p.I167fs	.	.	146.0	11.0	154.0	0.0	.	66	.	.	Atlas-INDEL
BACH2	60468	hgsc.bcm.edu	hg19	6	90660586	90660586	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BACH2	NM_021813	exon7	c.1240delC	p.P414fs	.	.	149.0	10.0	187.0	0.0	.	224	.	.	Atlas-INDEL
SETD4	54093	hgsc.bcm.edu	hg19	21	37418076	37418076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SETD4	NM_001007259	exon6	c.531delC	p.F177fs	.	.	160.0	10.0	215.0	0.0	.	37	.	.	Atlas-INDEL
PFKP	5214	hgsc.bcm.edu	hg19	10	3155593	3155593	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PFKP	NM_002627	exon13	c.1253delT	p.V418fs	.	.	146.0	12.0	163.0	0.0	.	182	.	.	Atlas-INDEL
C2CD5	9847	hgsc.bcm.edu	hg19	12	22671015	22671015	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014802	exon8	c.858delT	p.P286fs	.	.	162.0	10.0	220.0	0.0	.	.	.	.	Atlas-INDEL
ADK	132	hgsc.bcm.edu	hg19	10	76153962	76153962	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADK	NM_001202450	exon5	c.336delT	p.F112fs	.	.	137.0	10.0	239.0	0.0	.	28	.	.	Atlas-INDEL
DCT	1638	hgsc.bcm.edu	hg19	13	95118899	95118899	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DCT	NM_001129889	exon3	c.610delT	p.Y204fs	.	.	199.0	12.0	293.0	0.0	.	186	.	.	Atlas-INDEL
ARGLU1	55082	hgsc.bcm.edu	hg19	13	107219922	107219922	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARGLU1	NM_018011	exon1	c.347delT	p.I116fs	.	.	140.0	10.0	201.0	0.0	.	17	.	.	Atlas-INDEL
LCK	3932	hgsc.bcm.edu	hg19	1	32742265	32742265	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCK	NM_005356	exon9	c.841delT	p.S281fs	.	.	161.0	10.0	229.0	0.0	.	124	.	.	Atlas-INDEL
LSP1	4046	hgsc.bcm.edu	hg19	11	1902755	1902755	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LSP1	NM_001242932	exon4	c.668delA	p.E223fs	.	.	197.0	14.0	253.0	0.0	.	59	.	.	Atlas-INDEL
TULP4	56995	hgsc.bcm.edu	hg19	6	158915819	158915819	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TULP4	NM_001007466	exon11	c.1810delT	p.W604fs	.	.	169.0	11.0	291.0	0.0	.	137	.	.	Atlas-INDEL
CXXC11	285093	hgsc.bcm.edu	hg19	2	242814476	242814476	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_173821	exon2	c.768delT	p.P256fs	.	.	156.0	10.0	224.0	0.0	.	.	.	.	Atlas-INDEL
SMC6	79677	hgsc.bcm.edu	hg19	2	17888597	17888597	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMC6	NM_001142286	exon18	c.1896delT	p.N632fs	.	.	179.0	16.0	234.0	0.0	.	102	.	.	Atlas-INDEL
VPS13D	55187	hgsc.bcm.edu	hg19	1	12336449	12336449	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS13D	NM_015378	exon19	c.2803delA	p.T935fs	.	.	125.0	11.0	174.0	0.0	.	316	.	.	Atlas-INDEL
TESPA1	9840	hgsc.bcm.edu	hg19	12	55356761	55356761	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001098815	exon9	c.922delA	p.K308fs	.	.	153.0	12.0	169.0	0.0	.	.	.	.	Atlas-INDEL
USP24	23358	hgsc.bcm.edu	hg19	1	55608747	55608747	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP24	NM_015306	exon22	c.2486delT	p.I829fs	.	.	193.0	12.0	284.0	0.0	.	323	.	.	Atlas-INDEL
PGAM4	441531	hgsc.bcm.edu	hg19	X	77224433	77224433	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGAM4	NM_001029891	exon1	c.704delA	p.D235fs	.	.	151.0	11.0	226.0	0.0	.	28	.	.	Atlas-INDEL
KIAA1045	23349	hgsc.bcm.edu	hg19	9	34976586	34976586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1045	NM_015297	exon5	c.697delC	p.R233fs	.	.	110.0	11.0	170.0	0.0	.	60	.	.	Atlas-INDEL
LAMB1	3912	hgsc.bcm.edu	hg19	7	107564717	107564717	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMB1	NM_002291	exon33	c.5183delC	p.T1728fs	.	.	246.0	16.0	223.0	0.0	.	185	.	.	Atlas-INDEL
PLA2G4C	8605	hgsc.bcm.edu	hg19	19	48558214	48558214	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	PLA2G4C,NS,carcinoma,0,2	PLA2G4C	NM_001159322	exon15	c.1381delG	p.A461fs	.	.	171.0	11.0	180.0	0.0	.	76	.	.	Atlas-INDEL
KCNK10	54207	hgsc.bcm.edu	hg19	14	88693828	88693828	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK10	NM_138318	exon4	c.573delA	p.L191fs	.	.	96.0	37.0	80.0	0.0	.	273	.	.	Atlas-Indel,Pindel
SECISBP2L	9728	hgsc.bcm.edu	hg19	15	49319614	49319614	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SECISBP2L	NM_001193489	exon7	c.984delT	p.N328fs	.	.	184.0	12.0	229.0	0.0	.	118	.	.	Atlas-INDEL
DAB2	1601	hgsc.bcm.edu	hg19	5	39377168	39377168	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DAB2	NM_001343	exon12	c.1722delC	p.G574fs	.	.	192.0	12.0	251.0	0.0	.	124	.	.	Atlas-INDEL
IL27RA	9466	hgsc.bcm.edu	hg19	19	14150617	14150617	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL27RA	NM_004843	exon4	c.428delA	p.D143fs	.	.	152.0	10.0	221.0	0.0	.	56	.	.	Atlas-INDEL
HERC2	8924	hgsc.bcm.edu	hg19	15	28421641	28421641	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC2	NM_004667	exon63	c.9620delT	p.V3207fs	.	.	231.0	15.0	283.0	0.0	.	501	.	.	Atlas-INDEL
SMTNL1	219537	hgsc.bcm.edu	hg19	11	57313466	57313466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMTNL1	NM_001105565	exon4	c.1029delG	p.G343fs	.	.	165.0	10.0	232.0	0.0	.	68	.	.	Atlas-INDEL
ADCY9	115	hgsc.bcm.edu	hg19	16	4027526	4027526	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADCY9	NM_001116	exon9	c.2786delC	p.A929fs	.	.	203.0	13.0	306.0	0.0	.	151	.	.	Atlas-INDEL
TSPYL1	7259	hgsc.bcm.edu	hg19	6	116600132	116600132	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPYL1	NM_003309	exon1	c.863delA	p.Q288fs	.	.	165.0	11.0	203.0	0.0	.	28	.	.	Atlas-INDEL
SLC46A3	283537	hgsc.bcm.edu	hg19	13	29286951	29286951	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC46A3	NM_181785	exon3	c.927delG	p.L309fs	.	.	147.0	10.0	204.0	0.0	.	86	.	.	Atlas-INDEL
CCDC169-SOHLH2	100526761	hgsc.bcm.edu	hg19	13	36764122	36764122	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001198910	exon11	c.834delG	p.K278fs	.	.	171.0	11.0	216.0	0.0	.	.	.	.	Atlas-INDEL
AMOTL2	51421	hgsc.bcm.edu	hg19	3	134084701	134084701	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AMOTL2	NM_016201	exon5	c.1238delA	p.Q413fs	.	.	154.0	11.0	218.0	0.0	.	52	.	.	Atlas-INDEL
ZSCAN31	64288	hgsc.bcm.edu	hg19	6	28295184	28295184	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_030899	exon3	c.509delG	p.C170fs	.	.	143.0	12.0	195.0	0.0	.	.	.	.	Atlas-INDEL
EPX	8288	hgsc.bcm.edu	hg19	17	56274371	56274371	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPX	NM_000502	exon7	c.872delG	p.C291fs	.	.	189.0	12.0	177.0	0.0	.	95	.	.	Atlas-INDEL
CNTN3	5067	hgsc.bcm.edu	hg19	3	74385778	74385778	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTN3	NM_020872	exon11	c.1397delT	p.I466fs	.	.	219.0	14.0	228.0	0.0	.	174	.	.	Atlas-INDEL
DMD	1756	hgsc.bcm.edu	hg19	X	31198546	31198546	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DMD	NM_004006	exon69	c.10028delC	p.S3343fs	.	.	221.0	14.0	261.0	0.0	.	2127	.	.	Atlas-INDEL
NRIP1	8204	hgsc.bcm.edu	hg19	21	16339766	16339766	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NRIP1	NM_003489	exon4	c.749delG	p.R250fs	.	.	144.0	12.0	177.0	0.0	.	103	.	.	Atlas-INDEL
RHOBTB3	22836	hgsc.bcm.edu	hg19	5	95099309	95099309	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RHOBTB3	NM_014899	exon7	c.1145delT	p.L382X	.	.	172.0	11.0	219.0	0.0	.	43	.	.	Atlas-INDEL
ZNF157	7712	hgsc.bcm.edu	hg19	X	47271956	47271956	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF157	NM_003446	exon4	c.483delC	p.N161fs	.	.	162.0	10.0	182.0	0.0	.	46	.	.	Atlas-INDEL
FARP1	10160	hgsc.bcm.edu	hg19	13	99092237	99092237	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FARP1	NM_005766	exon22	c.2455delT	p.W819fs	.	.	122.0	10.0	143.0	0.0	.	207	.	.	Atlas-INDEL
CHD1	1105	hgsc.bcm.edu	hg19	5	98232103	98232103	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD1	NM_001270	exon11	c.1538delC	p.T513fs	.	.	167.0	11.0	206.0	0.0	.	137	.	.	Atlas-INDEL
CYP2S1	29785	hgsc.bcm.edu	hg19	19	41700601	41700601	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP2S1	NM_030622	exon2	c.329delC	p.T110fs	.	.	229.0	14.0	328.0	0.0	.	47	.	.	Atlas-INDEL
ATAD3B	83858	hgsc.bcm.edu	hg19	1	1431107	1431107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD3B	NM_031921	exon16	c.1856delT	p.M619fs	.	.	225.0	14.0	324.0	0.0	.	68	.	.	Atlas-INDEL
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24042637	24042637	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD2B	NM_017552	exon17	c.2248delC	p.P750fs	.	.	86.0	23.0	121.0	0.0	.	110	.	.	Atlas-Indel,Pindel
RDX	5962	hgsc.bcm.edu	hg19	11	110126047	110126047	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RDX	NM_001260493	exon8	c.763delT	p.F255fs	.	.	233.0	16.0	264.0	0.0	.	59	.	.	Atlas-INDEL
LNPEP	4012	hgsc.bcm.edu	hg19	5	96341897	96341897	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	LNPEP,caecum,carcinoma,0,1	LNPEP	NM_005575	exon10	c.1905delC	p.F635fs	.	.	165.0	10.0	188.0	0.0	.	80	.	.	Atlas-INDEL
FGFR3	2261	hgsc.bcm.edu	hg19	4	1803669	1803669	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FGFR3	NM_001163213	exon7	c.846delG	p.Q282fs	.	.	148.0	11.0	234.0	0.0	.	3320	.	.	Atlas-INDEL
CNOT4	4850	hgsc.bcm.edu	hg19	7	135106990	135106990	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT4	NM_001190850	exon3	c.288delT	p.N96fs	.	.	239.0	16.0	246.0	0.0	.	146	.	.	Atlas-INDEL
RPE65	6121	hgsc.bcm.edu	hg19	1	68905279	68905279	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPE65	NM_000329	exon7	c.691delT	p.C231fs	.	.	145.0	10.0	231.0	0.0	.	87	.	.	Atlas-INDEL
CNP	1267	hgsc.bcm.edu	hg19	17	40123969	40123969	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNP	NM_033133	exon3	c.735delA	p.R245fs	.	.	193.0	12.0	324.0	0.0	.	58	.	.	Atlas-INDEL
LILRA1	11024	hgsc.bcm.edu	hg19	19	55105714	55105714	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LILRA1	NM_006863	exon2	c.4delA	p.T2fs	.	.	216.0	15.0	254.0	0.0	.	105	.	.	Atlas-INDEL
IFNA17	3451	hgsc.bcm.edu	hg19	9	21227622	21227622	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFNA17	NM_021268	exon1	c.552delA	p.I184fs	.	.	344.0	24.0	426.0	0.0	.	17	.	.	Atlas-INDEL
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37366955	37366955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GOLGA4	NM_001172713	exon15	c.3643delG	p.E1215fs	.	.	233.0	15.0	288.0	0.0	.	173	.	.	Atlas-INDEL
SLC39A7	7922	hgsc.bcm.edu	hg19	6	33169107	33169107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC39A7	NM_001077516	exon2	c.84delC	p.L28fs	.	.	157.0	11.0	204.0	0.0	.	32	.	.	Atlas-INDEL
CYP4V2	285440	hgsc.bcm.edu	hg19	4	187130116	187130116	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP4V2	NM_207352	exon9	c.1187delC	p.P396fs	.	.	161.0	10.0	236.0	0.0	.	49	.	.	Atlas-INDEL
USP15	9958	hgsc.bcm.edu	hg19	12	62785098	62785098	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP15	NM_001252078	exon16	c.2121delC	p.H707fs	.	.	164.0	11.0	213.0	0.0	.	105	.	.	Atlas-INDEL
MFSD1	64747	hgsc.bcm.edu	hg19	3	158524843	158524843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MFSD1	NM_022736	exon4	c.490delA	p.I164fs	.	.	269.0	17.0	378.0	0.0	.	88	.	.	Atlas-INDEL
HIPK1	204851	hgsc.bcm.edu	hg19	1	114515848	114515848	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIPK1	NM_198268	exon16	c.3346delG	p.A1116fs	.	.	162.0	11.0	203.0	0.0	.	195	.	.	Atlas-INDEL
XIRP1	165904	hgsc.bcm.edu	hg19	3	39227535	39227535	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XIRP1	NM_194293	exon2	c.3403delT	p.W1135fs	.	.	164.0	11.0	222.0	0.0	.	173	.	.	Atlas-INDEL
XIRP2	129446	hgsc.bcm.edu	hg19	2	168108333	168108333	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	XIRP2	NM_152381	exon9	c.10430delG	p.R3477fs	.	.	175.0	11.0	208.0	0.0	.	914	.	.	Atlas-INDEL
FMNL3	91010	hgsc.bcm.edu	hg19	12	50100871	50100871	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FMNL3	NM_175736	exon1	c.94delT	p.C32fs	.	.	228.0	14.0	321.0	0.0	.	137	.	.	Atlas-INDEL
ATP13A2	23400	hgsc.bcm.edu	hg19	1	17312586	17312586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP13A2	NM_001141974	exon27	c.3372delG	p.P1124fs	.	.	160.0	10.0	247.0	0.0	.	85	.	.	Atlas-INDEL
ZNF585B	92285	hgsc.bcm.edu	hg19	19	37678072	37678072	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF585B	NM_152279	exon5	c.368delT	p.I123fs	.	.	191.0	16.0	206.0	0.0	.	91	.	.	Atlas-INDEL
MARCH8	220972	hgsc.bcm.edu	hg19	10	45954578	45954578	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MARCH8	NM_001002266	exon6	c.562delC	p.Q188fs	.	.	126.0	10.0	196.0	0.0	.	29	.	.	Atlas-INDEL
C2CD5	9847	hgsc.bcm.edu	hg19	12	22666279	22666279	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014802	exon9	c.988delC	p.P330fs	.	.	163.0	11.0	180.0	0.0	.	.	.	.	Atlas-INDEL
ZNF480	147657	hgsc.bcm.edu	hg19	19	52824876	52824876	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF480	NM_144684	exon5	c.372delT	p.I124fs	.	.	104.0	12.0	127.0	0.0	.	123	.	.	Atlas-INDEL
SPAG1	6674	hgsc.bcm.edu	hg19	8	101237506	101237506	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG1	NM_172218	exon14	c.1793delC	p.A598fs	.	.	166.0	11.0	156.0	0.0	.	80	.	.	Atlas-INDEL
CEP128	145508	hgsc.bcm.edu	hg19	14	81227952	81227952	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP128	NM_152446	exon16	c.2383delC	p.H795fs	.	.	173.0	12.0	234.0	0.0	.	146	.	.	Atlas-INDEL
NCOA3	8202	hgsc.bcm.edu	hg19	20	46252672	46252672	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCOA3	NM_181659	exon4	c.100delG	p.E34fs	.	.	180.0	11.0	225.0	0.0	.	156	.	.	Atlas-INDEL
BACH1	571	hgsc.bcm.edu	hg19	21	30701858	30701858	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BACH1	NM_206866	exon4	c.1619delA	p.D540fs	.	.	181.0	12.0	301.0	0.0	.	66	.	.	Atlas-INDEL
LMBRD1	55788	hgsc.bcm.edu	hg19	6	70411386	70411386	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	LMBRD1,NS,carcinoma,0,1	LMBRD1	NM_018368	exon11	c.1033delG	p.G345fs	.	.	148.0	10.0	209.0	0.0	.	61	.	.	Atlas-INDEL
SEZ6	124925	hgsc.bcm.edu	hg19	17	27284100	27284100	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEZ6	NM_001098635	exon13	c.2656delT	p.S886fs	.	.	156.0	10.0	196.0	0.0	.	61	.	.	Atlas-INDEL
IFT52	51098	hgsc.bcm.edu	hg19	20	42249541	42249541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFT52	NM_016004	exon9	c.743delA	p.N248fs	.	.	208.0	13.0	259.0	0.0	.	40	.	.	Atlas-INDEL
NKAIN1	79570	hgsc.bcm.edu	hg19	1	31656681	31656681	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NKAIN1	NM_024522	exon4	c.455delT	p.L152fs	.	.	171.0	12.0	217.0	0.0	.	21	.	.	Atlas-INDEL
SRSF12	135295	hgsc.bcm.edu	hg19	6	89827583	89827583	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRSF12	NM_080743	exon1	c.25delA	p.N9fs	.	.	140.0	11.0	250.0	0.0	.	17	.	.	Atlas-INDEL
C17orf75	64149	hgsc.bcm.edu	hg19	17	30660500	30660500	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C17orf75	NM_022344	exon9	c.912delA	p.L304fs	.	.	224.0	16.0	234.0	0.0	.	23	.	.	Atlas-INDEL
TLR10	81793	hgsc.bcm.edu	hg19	4	38776490	38776490	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR10	NM_030956	exon4	c.723delT	p.N241fs	.	.	120.0	10.0	129.0	0.0	.	87	.	.	Atlas-INDEL
PLEKHG4B	153478	hgsc.bcm.edu	hg19	5	163580	163580	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHG4B	NM_052909	exon11	c.2324delG	p.S775fs	.	.	193.0	12.0	167.0	0.0	.	167	.	.	Atlas-INDEL
FBXO36	130888	hgsc.bcm.edu	hg19	2	230841022	230841022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO36	NM_174899	exon2	c.161delC	p.A54fs	.	.	150.0	10.0	218.0	0.0	.	22	.	.	Atlas-INDEL
TMEM200B	399474	hgsc.bcm.edu	hg19	1	29447550	29447550	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM200B	NM_001171868	exon2	c.792delC	p.G264fs	.	.	192.0	12.0	236.0	0.0	.	9	.	.	Atlas-INDEL
PGC	5225	hgsc.bcm.edu	hg19	6	41708310	41708310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGC	NM_002630	exon6	c.687delT	p.G229fs	.	.	147.0	13.0	153.0	0.0	.	56	.	.	Atlas-INDEL
ZNF280B	140883	hgsc.bcm.edu	hg19	22	22842771	22842771	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF280B	NM_080764	exon4	c.954delT	p.N318fs	.	.	166.0	12.0	204.0	0.0	.	67	.	.	Atlas-INDEL
ZNF518B	85460	hgsc.bcm.edu	hg19	4	10447095	10447095	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ZNF518B,mouth,carcinoma,0,1	ZNF518B	NM_053042	exon3	c.859delG	p.D287fs	.	.	164.0	13.0	167.0	0.0	.	116	.	.	Atlas-INDEL
JAK2	3717	hgsc.bcm.edu	hg19	9	5077574	5077574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JAK2	NM_004972	exon15	c.1985delA	p.H662fs	.	.	164.0	10.0	122.0	0.0	.	35466	.	.	Atlas-INDEL
SMARCAD1	56916	hgsc.bcm.edu	hg19	4	95162076	95162076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMARCAD1	NM_001128429	exon6	c.623delG	p.R208fs	.	.	189.0	12.0	278.0	0.0	.	97	.	.	Atlas-INDEL
ZFYVE9	9372	hgsc.bcm.edu	hg19	1	52705235	52705235	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFYVE9	NM_007324	exon4	c.2145delC	p.T715fs	.	.	155.0	11.0	223.0	0.0	.	131	.	.	Atlas-INDEL
OGFRL1	79627	hgsc.bcm.edu	hg19	6	72011155	72011155	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OGFRL1	NM_024576	exon7	c.758delG	p.S253fs	.	.	156.0	12.0	176.0	0.0	.	44	.	.	Atlas-INDEL
USP53	54532	hgsc.bcm.edu	hg19	4	120192499	120192499	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP53	NM_019050	exon15	c.1483delG	p.A495fs	.	.	142.0	11.0	166.0	0.0	.	69	.	.	Atlas-INDEL
CNOT1	23019	hgsc.bcm.edu	hg19	16	58621151	58621151	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT1	NM_206999	exon6	c.388delG	p.G130fs	.	.	122.0	12.0	125.0	0.0	.	359	.	.	Atlas-INDEL
FIP1L1	81608	hgsc.bcm.edu	hg19	4	54294251	54294251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FIP1L1	NM_030917	exon13	c.1074delG	p.P358fs	.	.	192.0	15.0	278.0	0.0	.	60	.	.	Atlas-INDEL
PLEKHH3	79990	hgsc.bcm.edu	hg19	17	40823047	40823047	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHH3	NM_024927	exon9	c.1387delA	p.T463fs	.	.	116.0	10.0	132.0	0.0	.	49	.	.	Atlas-INDEL
CD97	976	hgsc.bcm.edu	hg19	19	14508727	14508727	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD97	NM_078481	exon8	c.798delG	p.P266fs	.	.	170.0	12.0	183.0	0.0	.	86	.	.	Atlas-INDEL
PLEKHG2	64857	hgsc.bcm.edu	hg19	19	39906055	39906055	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHG2	NM_022835	exon4	c.454delA	p.I152fs	.	.	205.0	13.0	218.0	0.0	.	329	.	.	Atlas-INDEL
POLE2	5427	hgsc.bcm.edu	hg19	14	50141076	50141076	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLE2	NM_001197331	exon4	c.316delT	p.F106fs	.	.	163.0	10.0	236.0	0.0	.	36	.	.	Atlas-INDEL
SPAG9	9043	hgsc.bcm.edu	hg19	17	49071274	49071274	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG9	NM_001130528	exon19	c.2250delT	p.N750fs	.	.	192.0	15.0	313.0	0.0	.	151	.	.	Atlas-Indel,Pindel
CFH	3075	hgsc.bcm.edu	hg19	1	196697534	196697534	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CFH	NM_000186	exon15	c.2294delT	p.L765X	.	.	191.0	12.0	137.0	0.0	.	251	.	.	Atlas-INDEL
ZFYVE16	9765	hgsc.bcm.edu	hg19	5	79769620	79769620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFYVE16	NM_001105251	exon17	c.4234delG	p.E1412fs	.	.	167.0	12.0	206.0	0.0	.	100	.	.	Atlas-INDEL
C10orf120	399814	hgsc.bcm.edu	hg19	10	124457833	124457833	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	C10orf120,NS,carcinoma,0,1	C10orf120	NM_001010912	exon3	c.425delT	p.I142fs	.	.	135.0	10.0	133.0	0.0	.	55	.	.	Atlas-INDEL
MICAL3	57553	hgsc.bcm.edu	hg19	22	18364031	18364031	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MICAL3	NM_001136004	exon17	c.2281delG	p.V761X	.	.	222.0	14.0	258.0	0.0	.	53	.	.	Atlas-INDEL
TMPRSS6	164656	hgsc.bcm.edu	hg19	22	37480793	37480793	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMPRSS6	NM_153609	exon9	c.1088delA	p.Q363fs	.	.	147.0	10.0	144.0	0.0	.	99	.	.	Atlas-INDEL
SI	6476	hgsc.bcm.edu	hg19	3	164710135	164710135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SI	NM_001041	exon42	c.4893delT	p.G1631fs	.	.	170.0	12.0	189.0	0.0	.	500	.	.	Atlas-INDEL
PCP4	5121	hgsc.bcm.edu	hg19	21	41300935	41300935	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCP4	NM_006198	exon3	c.87delA	p.E29fs	.	.	188.0	12.0	239.0	0.0	.	11	.	.	Atlas-INDEL
KLF15	28999	hgsc.bcm.edu	hg19	3	126071137	126071137	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLF15	NM_014079	exon2	c.630delC	p.G210fs	.	.	144.0	10.0	182.0	0.0	.	40	.	.	Atlas-INDEL
CHRNA1	1134	hgsc.bcm.edu	hg19	2	175622346	175622346	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHRNA1	NM_001039523	exon5	c.368delT	p.I123fs	.	.	179.0	11.0	253.0	0.0	.	92	.	.	Atlas-INDEL
ZCCHC11	23318	hgsc.bcm.edu	hg19	1	52891114	52891114	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC11	NM_001009881	exon29	c.4778delT	p.L1593fs	.	.	145.0	11.0	224.0	0.0	.	151	.	.	Atlas-INDEL
CCDC144A	9720	hgsc.bcm.edu	hg19	17	16638176	16638176	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC144A	NM_014695	exon12	c.2590delC	p.Q864fs	.	.	169.0	12.0	183.0	0.0	.	53	.	.	Atlas-INDEL
WDR37	22884	hgsc.bcm.edu	hg19	10	1170240	1170240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR37	NM_014023	exon12	c.1185delG	p.L395fs	.	.	117.0	11.0	140.0	0.0	.	52	.	.	Atlas-INDEL
ARFGEF1	10565	hgsc.bcm.edu	hg19	8	68130371	68130371	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARFGEF1	NM_006421	exon31	c.4342delG	p.A1448fs	.	.	179.0	13.0	194.0	0.0	.	196	.	.	Atlas-INDEL
RILPL2	196383	hgsc.bcm.edu	hg19	12	123907659	123907659	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RILPL2	NM_145058	exon3	c.538delG	p.D180fs	.	.	255.0	16.0	321.0	0.0	.	10	.	.	Atlas-INDEL
ADH7	131	hgsc.bcm.edu	hg19	4	100348965	100348965	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADH7	NM_001166504	exon5	c.590delC	p.S197fs	.	.	144.0	10.0	223.0	0.0	.	76	.	.	Atlas-INDEL
KLHDC1	122773	hgsc.bcm.edu	hg19	14	50190646	50190646	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLHDC1	NM_172193	exon5	c.458delG	p.C153fs	.	.	143.0	10.0	178.0	0.0	.	24	.	.	Atlas-INDEL
TLR3	7098	hgsc.bcm.edu	hg19	4	186998188	186998188	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR3	NM_003265	exon2	c.414delT	p.I138fs	.	.	119.0	10.0	150.0	0.0	.	83	.	.	Atlas-INDEL
ITIH5	80760	hgsc.bcm.edu	hg19	10	7618714	7618714	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITIH5	NM_001001851	exon10	c.1681delA	p.R561fs	.	.	144.0	11.0	219.0	0.0	.	343	.	.	Atlas-INDEL
DOCK6	57572	hgsc.bcm.edu	hg19	19	11363499	11363499	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOCK6	NM_020812	exon3	c.269delG	p.R90fs	.	.	165.0	11.0	231.0	0.0	.	104	.	.	Atlas-INDEL
PPIC	5480	hgsc.bcm.edu	hg19	5	122364469	122364469	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPIC	NM_000943	exon4	c.325+2G>-	.	.	.	164.0	10.0	211.0	0.0	.	18	.	.	Atlas-INDEL
KALRN	8997	hgsc.bcm.edu	hg19	3	124174076	124174076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KALRN	NM_003947	exon22	c.3598delG	p.E1200fs	.	.	140.0	10.0	173.0	0.0	.	556	.	.	Atlas-INDEL
SPAST	6683	hgsc.bcm.edu	hg19	2	32340780	32340780	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAST	NM_014946	exon6	c.879delG	p.P293fs	.	.	150.0	10.0	171.0	0.0	.	61	.	.	Atlas-INDEL
ABHD3	171586	hgsc.bcm.edu	hg19	18	19231648	19231648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABHD3	NM_138340	exon9	c.1135delC	p.L379fs	.	.	139.0	12.0	228.0	0.0	.	32	.	.	Atlas-INDEL
CYP26B1	56603	hgsc.bcm.edu	hg19	2	72359653	72359653	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CYP26B1,NS,carcinoma,0,1	CYP26B1	NM_019885	exon6	c.1243delG	p.D415fs	.	.	202.0	14.0	290.0	0.0	.	73	.	.	Atlas-INDEL
MPDZ	8777	hgsc.bcm.edu	hg19	9	13123168	13123168	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MPDZ	NM_003829	exon36	c.4938delT	p.G1646fs	.	.	145.0	10.0	202.0	0.0	.	324	.	.	Atlas-INDEL
TTLL2	83887	hgsc.bcm.edu	hg19	6	167755064	167755064	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTLL2	NM_031949	exon3	c.1675delG	p.V559fs	.	.	186.0	12.0	233.0	0.0	.	82	.	.	Atlas-INDEL
GK5	256356	hgsc.bcm.edu	hg19	3	141896386	141896386	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.,1	GK5	NM_001039547	exon12	c.1082delT	p.M361fs	.	.	191.0	12.0	269.0	0.0	.	45	.	.	Atlas-INDEL
BNIP2	663	hgsc.bcm.edu	hg19	15	59970126	59970126	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BNIP2	NM_004330	exon5	c.820delG	p.V274fs	.	.	204.0	13.0	259.0	0.0	.	27	.	.	Atlas-INDEL
HNRNPU	3192	hgsc.bcm.edu	hg19	1	245027581	245027581	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HNRNPU	NM_004501	exon1	c.30delG	p.K10fs	.	.	316.0	19.0	267.0	0.0	.	64	.	.	Atlas-INDEL
PGBD2	267002	hgsc.bcm.edu	hg19	1	249211954	249211954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGBD2	NM_170725	exon3	c.1170delG	p.L390fs	.	.	229.0	14.0	158.0	0.0	.	103	.	.	Atlas-INDEL
B3GNT4	79369	hgsc.bcm.edu	hg19	12	122691000	122691000	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	B3GNT4	NM_030765	exon3	c.201delT	p.A67fs	.	.	138.0	10.0	227.0	0.0	.	35	.	.	Atlas-INDEL
TNXB	7148	hgsc.bcm.edu	hg19	6	32036432	32036432	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNXB	NM_019105	exon17	c.5956delA	p.I1986fs	.	.	190.0	12.0	215.0	0.0	.	553	.	.	Atlas-INDEL
ITGA4	3676	hgsc.bcm.edu	hg19	2	182339748	182339748	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGA4	NM_000885	exon3	c.380delT	p.L127fs	.	.	250.0	15.0	322.0	0.0	.	142	.	.	Atlas-INDEL
GSG1	83445	hgsc.bcm.edu	hg19	12	13237891	13237891	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSG1	NM_001080555	exon7	c.1034delC	p.A345fs	.	.	209.0	13.0	342.0	0.0	.	62	.	.	Atlas-INDEL
EPHA8	2046	hgsc.bcm.edu	hg19	1	22927800	22927800	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPHA8	NM_020526	exon16	c.2736delA	p.P912fs	.	.	222.0	14.0	271.0	0.0	.	221	.	.	Atlas-INDEL
SWT1	54823	hgsc.bcm.edu	hg19	1	185143640	185143640	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SWT1	NM_017673	exon5	c.360delT	p.T120fs	.	.	238.0	15.0	207.0	0.0	.	88	.	.	Atlas-INDEL
ZNF71	58491	hgsc.bcm.edu	hg19	19	57133366	57133366	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF71	NM_021216	exon3	c.710delC	p.T237fs	.	.	163.0	10.0	239.0	0.0	.	69	.	.	Atlas-INDEL
INTS1	26173	hgsc.bcm.edu	hg19	7	1517412	1517412	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	INTS1	NM_001080453	exon34	c.4792delA	p.K1598fs	.	.	195.0	13.0	177.0	0.0	.	145	.	.	Atlas-INDEL
MIR205HG	642587	hgsc.bcm.edu	hg19	1	209602687	209602687	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001104548	exon2	c.44delG	p.G15fs	.	.	195.0	14.0	164.0	0.0	.	.	.	.	Atlas-INDEL
C3orf38	285237	hgsc.bcm.edu	hg19	3	88205437	88205437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C3orf38	NM_173824	exon3	c.641delG	p.S214fs	.	.	143.0	10.0	189.0	0.0	.	29	.	.	Atlas-INDEL
TNFSF11	8600	hgsc.bcm.edu	hg19	13	43180938	43180938	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNFSF11	NM_003701	exon5	c.837delA	p.G279fs	.	.	194.0	13.0	303.0	0.0	.	43	.	.	Atlas-INDEL
C16orf71	146562	hgsc.bcm.edu	hg19	16	4797357	4797357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C16orf71	NM_139170	exon9	c.1293delG	p.G431fs	.	.	191.0	12.0	296.0	0.0	.	46	.	.	Atlas-INDEL
DPP6	1804	hgsc.bcm.edu	hg19	7	154263979	154263979	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DPP6	NM_130797	exon5	c.604delC	p.L202fs	.	.	139.0	10.0	115.0	0.0	.	383	.	.	Atlas-INDEL
PCGF2	7703	hgsc.bcm.edu	hg19	17	36891838	36891838	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCGF2	NM_007144	exon11	c.674delT	p.L225fs	.	.	133.0	10.0	124.0	0.0	.	24	.	.	Atlas-INDEL
FIBCD1	84929	hgsc.bcm.edu	hg19	9	133799700	133799700	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FIBCD1	NM_032843	exon3	c.637delC	p.L213fs	.	.	131.0	12.0	185.0	0.0	.	34	.	.	Atlas-INDEL
SENP7	57337	hgsc.bcm.edu	hg19	3	101051684	101051684	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SENP7	NM_020654	exon18	c.2504delG	p.R835fs	.	.	223.0	15.0	264.0	0.0	.	170	.	.	Atlas-INDEL
PDPK1	5170	hgsc.bcm.edu	hg19	16	2607955	2607955	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDPK1	NM_001261816	exon2	c.275delC	p.S92fs	.	.	208.0	16.0	339.0	0.0	.	37	.	.	Atlas-INDEL
SYNGAP1	8831	hgsc.bcm.edu	hg19	6	33388070	33388070	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYNGAP1	NM_006772	exon1	c.28delC	p.R10fs	.	.	193.0	13.0	264.0	0.0	.	202	.	.	Atlas-INDEL
GREM1	26585	hgsc.bcm.edu	hg19	15	33022990	33022990	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GREM1	NM_013372	exon2	c.98delT	p.I33fs	.	.	114.0	11.0	143.0	0.0	.	18	.	.	Atlas-INDEL
SPIN2B	474343	hgsc.bcm.edu	hg19	X	57146927	57146927	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPIN2B	NM_001006683	exon2	c.137delG	p.R46fs	.	.	157.0	10.0	279.0	0.0	.	11	.	.	Atlas-INDEL
COL16A1	1307	hgsc.bcm.edu	hg19	1	32136240	32136240	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL16A1	NM_001856	exon49	c.3159delA	p.P1053fs	.	.	193.0	12.0	187.0	0.0	.	137	.	.	Atlas-INDEL
METTL4	64863	hgsc.bcm.edu	hg19	18	2544668	2544668	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	METTL4	NM_022840	exon7	c.1166delC	p.T389fs	.	.	165.0	12.0	257.0	0.0	.	40	.	.	Atlas-INDEL
TMEM126B	55863	hgsc.bcm.edu	hg19	11	85346800	85346800	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM126B	NM_018480	exon4	c.486delT	p.T162fs	.	.	161.0	10.0	180.0	0.0	.	13	.	.	Atlas-INDEL
UGT1A3	54659	hgsc.bcm.edu	hg19	2	234638491	234638492	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT1A3	NM_019093	exon1	c.718_719del	p.240_240del	.	.	327.0	72.0	473.0	0.0	.	91	.	.	Atlas-Indel,Pindel
GALNT12	79695	hgsc.bcm.edu	hg19	9	101606479	101606479	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GALNT12	NM_024642	exon8	c.1445delT	p.M482fs	.	.	149.0	10.0	249.0	0.0	.	37	.	.	Atlas-INDEL
LRFN4	78999	hgsc.bcm.edu	hg19	11	66627620	66627620	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRFN4	NM_024036	exon2	c.1861delC	p.R621fs	.	.	147.0	10.0	98.0	0.0	.	25	.	.	Atlas-INDEL
PARP8	79668	hgsc.bcm.edu	hg19	5	50129819	50129819	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARP8	NM_001178055	exon25	c.2313delG	p.Q771fs	.	.	157.0	11.0	242.0	0.0	.	93	.	.	Atlas-INDEL
PAPOLA	10914	hgsc.bcm.edu	hg19	14	97022557	97022557	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAPOLA	NM_032632	exon19	c.1810delA	p.I604fs	.	.	169.0	13.0	209.0	0.0	.	58	.	.	Atlas-INDEL
KAT6A	7994	hgsc.bcm.edu	hg19	8	41792228	41792228	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_006766	exon17	c.3511delC	p.P1171fs	.	.	194.0	14.0	252.0	0.0	.	.	.	.	Atlas-INDEL
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125261880	125261880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTNAP5	NM_130773	exon8	c.1070delC	p.T357fs	.	.	173.0	12.0	223.0	0.0	.	405	.	.	Atlas-INDEL
OLFML3	56944	hgsc.bcm.edu	hg19	1	114524304	114524304	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OLFML3	NM_020190	exon3	c.1133delA	p.N378fs	.	.	181.0	11.0	214.0	0.0	.	42	.	.	Atlas-INDEL
FGF9	2254	hgsc.bcm.edu	hg19	13	22246178	22246178	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FGF9	NM_002010	exon1	c.126delA	p.A42fs	.	.	175.0	12.0	227.0	0.0	.	25	.	.	Atlas-INDEL
IQGAP3	128239	hgsc.bcm.edu	hg19	1	156503821	156503821	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IQGAP3	NM_178229	exon30	c.3854delA	p.E1285fs	.	.	168.0	11.0	127.0	0.0	.	146	.	.	Atlas-INDEL
EFTUD1	79631	hgsc.bcm.edu	hg19	15	82512000	82512000	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EFTUD1	NM_024580	exon14	c.1605delA	p.L535fs	.	.	244.0	19.0	253.0	0.0	.	74	.	.	Atlas-INDEL
ATG13	9776	hgsc.bcm.edu	hg19	11	46670721	46670721	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ATG13_ENST00000528494,NS,carcinoma,0,2	ATG13	NM_001142673	exon6	c.304delG	p.E102fs	.	.	192.0	12.0	265.0	0.0	.	60	.	.	Atlas-INDEL
HSPB3	8988	hgsc.bcm.edu	hg19	5	53751734	53751734	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSPB3	NM_006308	exon1	c.114delT	p.P38fs	.	.	147.0	11.0	201.0	0.0	.	17	.	.	Atlas-INDEL
SWT1	54823	hgsc.bcm.edu	hg19	1	185175808	185175808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SWT1	NM_017673	exon13	c.1884delT	p.F628fs	.	.	181.0	11.0	158.0	0.0	.	88	.	.	Atlas-INDEL
TMEM168	64418	hgsc.bcm.edu	hg19	7	112424114	112424114	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM168	NM_022484	exon2	c.768delG	p.L256fs	.	.	154.0	11.0	113.0	0.0	.	84	.	.	Atlas-INDEL
THOC2	57187	hgsc.bcm.edu	hg19	X	122802060	122802060	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THOC2	NM_001081550	exon10	c.968delT	p.M323fs	.	.	163.0	10.0	220.0	0.0	.	310	.	.	Atlas-INDEL
AHNAK	79026	hgsc.bcm.edu	hg19	11	62288928	62288928	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHNAK	NM_001620	exon5	c.12962delT	p.M4321fs	.	.	163.0	10.0	255.0	0.0	.	532	.	.	Atlas-INDEL
AP4B1	10717	hgsc.bcm.edu	hg19	1	114442999	114442999	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AP4B1	NM_006594	exon6	c.642delC	p.G214fs	.	.	188.0	13.0	238.0	0.0	.	72	.	.	Atlas-INDEL
CENPC1	1060	hgsc.bcm.edu	hg19	4	68374713	68374713	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CENPC1	NM_001812	exon10	c.1724delC	p.T575fs	.	.	205.0	13.0	208.0	0.0	.	66	.	.	Atlas-INDEL
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27337888	27337888	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD26	NM_014915	exon17	c.1657delC	p.H553fs	.	.	198.0	15.0	270.0	0.0	.	179	.	.	Atlas-INDEL
UPF2	26019	hgsc.bcm.edu	hg19	10	11997384	11997384	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UPF2	NM_080599	exon14	c.2698delG	p.G900fs	.	.	127.0	10.0	202.0	0.0	.	111	.	.	Atlas-INDEL
PREX2	80243	hgsc.bcm.edu	hg19	8	68995503	68995503	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PREX2	NM_025170	exon18	c.1906delA	p.I636fs	.	.	159.0	10.0	157.0	0.0	.	614	.	.	Atlas-INDEL
SH3GL1	6455	hgsc.bcm.edu	hg19	19	4364123	4364123	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH3GL1	NM_003025	exon5	c.428delT	p.L143fs	.	.	206.0	14.0	299.0	0.0	.	52	.	.	Atlas-INDEL
PKHD1	5314	hgsc.bcm.edu	hg19	6	51927342	51927342	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKHD1	NM_170724	exon14	c.1094delG	p.W365fs	.	.	162.0	10.0	216.0	0.0	.	927	.	.	Atlas-INDEL
LYST	1130	hgsc.bcm.edu	hg19	1	235964220	235964220	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYST	NM_000081	exon9	c.3891delG	p.L1297fs	.	.	151.0	12.0	136.0	0.0	.	370	.	.	Atlas-INDEL
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161455391	161455391	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP3K4	NM_006724	exon2	c.252delT	p.S84fs	.	.	157.0	10.0	195.0	0.0	.	364	.	.	Atlas-INDEL
ABCB4	5244	hgsc.bcm.edu	hg19	7	87079305	87079305	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCB4	NM_018849	exon8	c.813delC	p.G271fs	.	.	297.0	18.0	305.0	0.0	.	177	.	.	Atlas-INDEL
PARN	5073	hgsc.bcm.edu	hg19	16	14576541	14576541	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARN	NM_002582	exon22	c.1625delA	p.Q542fs	.	.	200.0	15.0	317.0	0.0	.	72	.	.	Atlas-INDEL
LRP1	4035	hgsc.bcm.edu	hg19	12	57550002	57550002	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRP1	NM_002332	exon9	c.1352delA	p.Q451fs	.	.	177.0	11.0	225.0	0.0	.	428	.	.	Atlas-INDEL
AGBL2	79841	hgsc.bcm.edu	hg19	11	47721054	47721054	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AGBL2	NM_024783	exon8	c.639delG	p.K213fs	.	.	149.0	10.0	198.0	0.0	.	73	.	.	Atlas-INDEL
USP31	57478	hgsc.bcm.edu	hg19	16	23093870	23093870	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	USP31,right_lower_lobe,carcinoma,0,1	USP31	NM_020718	exon12	c.1840delG	p.D614fs	.	.	147.0	10.0	253.0	0.0	.	122	.	.	Atlas-INDEL
FBXO5	26271	hgsc.bcm.edu	hg19	6	153296240	153296240	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO5	NM_012177	exon2	c.621delG	p.K207fs	.	.	148.0	11.0	243.0	0.0	.	40	.	.	Atlas-INDEL
RUSC2	9853	hgsc.bcm.edu	hg19	9	35557957	35557957	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RUSC2	NM_014806	exon6	c.3029delA	p.H1010fs	.	.	148.0	10.0	204.0	0.0	.	88	.	.	Atlas-INDEL
ZNF646	9726	hgsc.bcm.edu	hg19	16	31092588	31092588	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF646	NM_014699	exon2	c.4942delA	p.T1648fs	.	.	165.0	10.0	230.0	0.0	.	133	.	.	Atlas-INDEL
AMER3	205147	hgsc.bcm.edu	hg19	2	131520663	131520663	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001105195	exon2	c.1017delA	p.Q339fs	.	.	157.0	10.0	221.0	0.0	.	.	.	.	Atlas-INDEL
MAPKBP1	23005	hgsc.bcm.edu	hg19	15	42092080	42092080	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPKBP1	NM_001128608	exon3	c.173delA	p.D58fs	.	.	158.0	14.0	254.0	0.0	.	120	.	.	Atlas-INDEL
SLC9A2	6549	hgsc.bcm.edu	hg19	2	103300596	103300596	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC9A2	NM_003048	exon5	c.1225delG	p.V409fs	.	.	177.0	11.0	268.0	0.0	.	112	.	.	Atlas-INDEL
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48056088	48056088	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEMA6D	NM_153617	exon10	c.788delT	p.M263fs	.	.	193.0	12.0	301.0	0.0	.	322	.	.	Atlas-INDEL
MAP2	4133	hgsc.bcm.edu	hg19	2	210558065	210558065	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP2	NM_002374	exon7	c.1170delA	p.L390fs	.	.	182.0	11.0	260.0	0.0	.	372	.	.	Atlas-INDEL
ATF4	468	hgsc.bcm.edu	hg19	22	39917489	39917489	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATF4	NM_001675	exon1	c.38delT	p.V13fs	.	.	181.0	11.0	215.0	0.0	.	27	.	.	Atlas-INDEL
POC5	134359	hgsc.bcm.edu	hg19	5	74998581	74998581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POC5	NM_001099271	exon5	c.363delC	p.F121fs	.	.	173.0	15.0	258.0	0.0	.	82	.	.	Atlas-INDEL
DNAJB12	54788	hgsc.bcm.edu	hg19	10	74104834	74104834	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJB12	NM_017626	exon2	c.288delA	p.P96fs	.	.	155.0	10.0	167.0	0.0	.	22	.	.	Atlas-INDEL
ERBB2IP	55914	hgsc.bcm.edu	hg19	5	65374265	65374265	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERBB2IP	NM_001253699	exon26	c.4166delG	p.S1389fs	.	.	216.0	13.0	309.0	0.0	.	120	.	.	Atlas-INDEL
C20orf26	26074	hgsc.bcm.edu	hg19	20	20226815	20226815	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C20orf26	NM_015585	exon19	c.2114delG	p.G705fs	.	.	217.0	10.0	237.0	0.0	.	188	.	.	Pindel
SUCLG2	8801	hgsc.bcm.edu	hg19	3	67570955	67570955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUCLG2	NM_001177599	exon5	c.522delC	p.G174fs	.	.	242.0	11.0	342.0	0.0	.	95	.	.	Pindel
ZNF362	149076	hgsc.bcm.edu	hg19	1	33745933	33745933	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF362	NM_152493	exon5	c.557delG	p.G186fs	.	.	231.0	10.0	264.0	0.0	.	31	.	.	Pindel
POLR1A	25885	hgsc.bcm.edu	hg19	2	86259442	86259442	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLR1A	NM_015425	exon29	c.4226delA	p.D1409fs	.	.	243.0	10.0	283.0	0.0	.	137	.	.	Pindel
GAPT	202309	hgsc.bcm.edu	hg19	5	57790552	57790552	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GAPT	NM_152687	exon3	c.188delG	p.G63fs	.	.	186.0	10.0	230.0	0.0	.	21	.	.	Pindel
MPRIP	23164	hgsc.bcm.edu	hg19	17	17061760	17061760	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MPRIP	NM_015134	exon14	c.1489delG	p.E497fs	.	.	273.0	12.0	432.0	0.0	.	87	.	.	Pindel
SLC29A1	2030	hgsc.bcm.edu	hg19	6	44197187	44197187	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC29A1	NM_004955	exon3	c.89delA	p.N30fs	.	.	282.0	12.0	371.0	0.0	.	45	.	.	Pindel