Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TMEM51 55092 hgsc.bcm.edu hg19 1 15541828 15541828 + Missense_Mutation SNP G G A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . TMEM51 NM_018022 exon2 c.G245A p.C82Y CTATCTGCCTGAG . 36.0 11.0 41.0 0.0 . 28 . . Atlas-SNP PAPPA2 60676 hgsc.bcm.edu hg19 1 176564726 176564726 + Silent SNP C C T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . PAPPA2 NM_021936 exon3 c.C1986T p.P662P CTCACCCAAGAGG . 39.0 14.0 39.0 0.0 . 665 . . Atlas-SNP LYST 1130 hgsc.bcm.edu hg19 1 235937265 235937265 + Missense_Mutation SNP T T A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . LYST NM_000081 exon19 c.A5661T p.E1887D AATATCTTCACCA . 277.0 87.0 216.0 0.0 . 370 . . Atlas-SNP OR6F1 343169 hgsc.bcm.edu hg19 1 247875185 247875185 + Silent SNP C C T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb OR6F1,NS,carcinoma,0,2 OR6F1 NM_001005286 exon1 c.G873A p.T291T ACGAAGCGTATAG . 61.0 19.0 55.0 0.0 . 88 . . Atlas-SNP SNTG2 54221 hgsc.bcm.edu hg19 2 1241722 1241722 + Missense_Mutation SNP C C G novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . SNTG2 NM_018968 exon10 c.C782G p.T261R TTTACACAGCCCA . 37.0 10.0 30.0 0.0 . 125 . . Atlas-SNP CRIM1 51232 hgsc.bcm.edu hg19 2 36739445 36739445 + Missense_Mutation SNP G G A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . CRIM1 NM_016441 exon10 c.G1688A p.R563H TCTGTCGCTGTAA . 144.0 7.0 129.0 0.0 . 88 . . Atlas-SNP HEATR5B 54497 hgsc.bcm.edu hg19 2 37306331 37306331 + Missense_Mutation SNP C C A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . HEATR5B NM_019024 exon3 c.G270T p.Q90H AAGTGTCTGAAAA . 155.0 51.0 139.0 0.0 . 185 . . Atlas-SNP SPHKAP 80309 hgsc.bcm.edu hg19 2 228884827 228884827 + Missense_Mutation SNP T T A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . SPHKAP NM_030623 exon7 c.A743T p.Q248L TTTAGCTGTTTAC . 177.0 52.0 134.0 0.0 . 750 . . Atlas-SNP SHQ1 55164 hgsc.bcm.edu hg19 3 72890225 72890225 + Missense_Mutation SNP A A T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . SHQ1 NM_018130 exon4 c.T457A p.L153I ATCGTAAGTTTCC . 153.0 59.0 132.0 0.0 . 60 . . Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130354582 130354582 + Missense_Mutation SNP C C A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . COL6A6 NM_001102608 exon27 c.C5068A p.L1690M ACTGGGCTGAAGG . 58.0 25.0 53.0 0.0 . 497 . . Atlas-SNP KY 339855 hgsc.bcm.edu hg19 3 134366278 134366278 + Silent SNP G G A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb KY_ENST00000423778,NS,carcinoma,0,2 KY NM_178554 exon2 c.C198T p.H66H TTTACCGTGAAAG . 62.0 16.0 76.0 0.0 . 92 . . Atlas-SNP PSMD2 5708 hgsc.bcm.edu hg19 3 184020202 184020202 + Missense_Mutation SNP G G A rs11545182 byhapmap;alternate_allele TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . PSMD2 NM_002808 exon6 c.G749A p.R250H TACTGCGTTGTGC . 111.0 31.0 111.0 0.0 . 56 . G|1.000;|0.000 Atlas-SNP USP38 84640 hgsc.bcm.edu hg19 4 144135683 144135683 + Missense_Mutation SNP T T C novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . USP38 NM_032557 exon9 c.T2554C p.S852P GGTATATCCTCTG . 133.0 6.0 103.0 0.0 . 92 . . Atlas-SNP USP38 84640 hgsc.bcm.edu hg19 4 144135888 144135888 + Missense_Mutation SNP G G T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . USP38 NM_032557 exon9 c.G2759T p.R920I ACAGTAGAGTGAC . 217.0 76.0 172.0 0.0 . 92 . . Atlas-SNP LRRC14B 389257 hgsc.bcm.edu hg19 5 192439 192439 + Silent SNP C C T rs369014987 TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . LRRC14B NM_001080478 exon1 c.C786T p.D262D TCCCGACGGCGAG . 69.0 21.0 76.0 0.0 . 30 . . Atlas-SNP HIVEP1 3096 hgsc.bcm.edu hg19 6 12121666 12121666 + Silent SNP G G A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . HIVEP1 NM_002114 exon4 c.G1638A p.L546L CTTTTTGCTACAG . 65.0 21.0 62.0 0.0 . 242 . . Atlas-SNP MDC1 9656 hgsc.bcm.edu hg19 6 30673414 30673414 + Silent SNP G G A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . MDC1 NM_014641 exon10 c.C3546T p.P1182P AGATGTGGGCTCA . 265.0 82.0 240.0 0.0 . 218 . . Atlas-SNP PPT2 9374 hgsc.bcm.edu hg19 6 32130607 32130607 + Silent SNP G G A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . PPT2 NM_138717 exon9 c.G807A p.G269G TTTTGGGTTGAAG . 142.0 37.0 140.0 0.0 . 19 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 65612308 65612308 + Silent SNP G G A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . EYS NM_001142800 exon17 c.C2727T p.V909V ATTGTTGACCATA . 109.0 43.0 103.0 0.0 . 527 . . Atlas-SNP MOSPD3 64598 hgsc.bcm.edu hg19 7 100211234 100211234 + Missense_Mutation SNP C C T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb MOSPD3,NS,carcinoma,0,1 MOSPD3 NM_001040098 exon4 c.C416T p.A139V CCCCAGCGTACCC . 66.0 25.0 54.0 0.0 . 29 . . Atlas-SNP FBXL6 26233 hgsc.bcm.edu hg19 8 145580146 145580146 + Missense_Mutation SNP G G C novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . FBXL6 NM_012162 exon7 c.C1039G p.R347G CCCCTCGTCCCGG . 75.0 25.0 70.0 0.0 . 26 . . Atlas-SNP SPAG8 26206 hgsc.bcm.edu hg19 9 35810300 35810300 + Missense_Mutation SNP C C G novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . SPAG8 NM_001039592 exon6 c.G1207C p.D403H GGTAGTCGTGAGG . 67.0 21.0 86.0 0.0 . 67 . . Atlas-SNP GRIN1 2902 hgsc.bcm.edu hg19 9 140057102 140057102 + Missense_Mutation SNP A A G novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . GRIN1 NM_001185091 exon15 c.A1987G p.I663V GCCATGATCATCG . 25.0 11.0 19.0 0.0 . 51 . . Atlas-SNP OR51I1 390063 hgsc.bcm.edu hg19 11 5462320 5462320 + Missense_Mutation SNP C C T rs138548705 TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb OR51I1,NS,carcinoma,-1,1 OR51I1 NM_001005288 exon1 c.G425A p.R142H AATATACGGTTGT . 92.0 36.0 83.0 1.0 . 66 . C|1.000;T|0.000 Atlas-SNP LYVE1 10894 hgsc.bcm.edu hg19 11 10580711 10580711 + Missense_Mutation SNP C C T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . LYVE1 NM_006691 exon6 c.G916A p.E306K TGGACTCTTCTGG . 344.0 104.0 327.0 0.0 . 19 . . Atlas-SNP CEP290 80184 hgsc.bcm.edu hg19 12 88478474 88478474 + Silent SNP A A C novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . CEP290 NM_025114 exon35 c.T4593G p.S1531S GTGGTGAGATTTT . 178.0 62.0 151.0 0.0 . 195 . . Atlas-SNP ANO4 121601 hgsc.bcm.edu hg19 12 101333093 101333093 + Missense_Mutation SNP T T A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . ANO4 NM_178826 exon3 c.T56A p.V19E TTCTAGTGGCCAA . 171.0 37.0 165.0 0.0 . 183 . . Atlas-SNP TMEM132C 92293 hgsc.bcm.edu hg19 12 129190073 129190073 + Nonsense_Mutation SNP C C T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . TMEM132C NM_001136103 exon9 c.C2560T p.R854X GCTCTCCGAAGAG . 27.0 9.0 37.0 0.0 . 142 . . Atlas-SNP MEX3B 84206 hgsc.bcm.edu hg19 15 82336764 82336764 + Silent SNP G G T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . MEX3B NM_032246 exon2 c.C447A p.G149G CACCGCGCCGTTG . 30.0 17.0 60.0 0.0 . 50 . . Atlas-SNP MEX3B 84206 hgsc.bcm.edu hg19 15 82336765 82336765 + Missense_Mutation SNP C C T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . MEX3B NM_032246 exon2 c.G446A p.G149D ACCGCGCCGTTGA . 30.0 17.0 61.0 0.0 . 50 . . Atlas-SNP C16orf90 646174 hgsc.bcm.edu hg19 16 3543984 3543984 + Missense_Mutation SNP G G A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . C16orf90 NM_001080524 exon3 c.C404T p.S135F GAACTGGAAGCTG . 21.0 8.0 22.0 0.0 . 16 . . Atlas-SNP BRD7 29117 hgsc.bcm.edu hg19 16 50357553 50357553 + Nonsense_Mutation SNP A A T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . BRD7 NM_013263 exon12 c.T1388A p.L463X TCCAGTAAACTAT . 103.0 55.0 107.0 0.0 . 61 . . Atlas-SNP BCL2 596 hgsc.bcm.edu hg19 18 60795937 60795937 + Nonsense_Mutation SNP C C T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . BCL2 NM_000633 exon3 c.G641A p.W214X GACAGCCAGGAGA . 96.0 36.0 76.0 0.0 . 272 . . Atlas-SNP OR1I1 126370 hgsc.bcm.edu hg19 19 15198366 15198366 + Missense_Mutation SNP G G A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . OR1I1 NM_001004713 exon1 c.G490A p.A164T CTCATGGCTCAAC . 69.0 9.0 88.0 0.0 . 58 . . Atlas-SNP KIAA1683 80726 hgsc.bcm.edu hg19 19 18368567 18368567 + Missense_Mutation SNP C C T novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb KIAA1683_ENST00000392413,colon,carcinoma,0,2 KIAA1683 NM_001145304 exon4 c.G3527A p.R1176H TCCCGGCGGGTGC . 11.0 4.0 40.0 0.0 . 190 . . Atlas-SNP UMODL1 89766 hgsc.bcm.edu hg19 21 43529725 43529725 + Missense_Mutation SNP T T A novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . UMODL1 NM_173568 exon10 c.T1573A p.C525S GCCTGGTGCATCA . 14.0 8.0 24.0 0.0 . 186 . . Atlas-SNP LPAR4 2846 hgsc.bcm.edu hg19 X 78010878 78010878 + Missense_Mutation SNP T T C novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . LPAR4 NM_005296 exon2 c.T512C p.I171T GCGGTATTTCAGC . 88.0 4.0 75.0 0.0 . 83 . . Atlas-SNP TIAL1 7073 hgsc.bcm.edu hg19 10 121342010 121342010 + Frame_Shift_Del DEL A A - novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . TIAL1 NM_001033925 exon3 c.241delG p.A81fs . . 151.0 46.0 163.0 0.0 . 47 . . Atlas-INDEL PHYHIPL 84457 hgsc.bcm.edu hg19 10 61005153 61005174 + Frame_Shift_Del DEL GACCTGTACAGAAGAAGATGGG GACCTGTACAGAAGAAGATGGG - novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 GACCTGTACAGAAGAAGATGGG GACCTGTACAGAAGAAGATGGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . PHYHIPL NM_032439 exon5 c.932_953del p.311_318del . . 89.0 12.0 129.0 0.0 . 44 . . Atlas-Indel,Pindel RB1 5925 hgsc.bcm.edu hg19 13 48954378 48954378 + Frame_Shift_Del DEL G G - novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb RB1,NS,carcinoma,0,1 RB1 NM_000321 exon16 c.1498delA p.R500fs . . 107.0 55.0 116.0 0.0 . 1068 . . Atlas-Indel,Pindel TIAL1 7073 hgsc.bcm.edu hg19 10 121342007 121342008 + Frame_Shift_Del DEL TG TG - novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . TIAL1 NM_001033925 exon3 c.243_244del p.81_82del . . 152.0 46.0 163.0 0.0 . 47 . . Atlas-INDEL TIAL1 7073 hgsc.bcm.edu hg19 10 121342011 121342013 + In_Frame_Del DEL GCA GCA - novel TCGA-G3-A3CH-01A-11D-A22F-10 TCGA-G3-A3CH-11A-11D-A22F-10 GCA GCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f57d294a-3b16-45e5-a1ff-1eaae9229aee cd23964a-9449-49ed-a1db-32a3dfb922bb . TIAL1 NM_001033925 exon3 c.238_240del p.80_80del . . 151.0 41.0 163.0 0.0 . 47 . . Pindel