Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CELF3 11189 hgsc.bcm.edu hg19 1 151679702 151679702 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CELF3 NM_007185 exon8 c.G841A p.G281S TGTAGCCGTTGAC . 125.0 17.0 103.0 0.0 . 49 . . Atlas-SNP PBX1 5087 hgsc.bcm.edu hg19 1 164768969 164768969 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PBX1 NM_001204963 exon4 c.C544T p.L182F ATGAATCTCCTGC . 83.0 16.0 58.0 0.0 . 60 . . Atlas-SNP DHX9 1660 hgsc.bcm.edu hg19 1 182852382 182852382 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DHX9 NM_001357 exon25 c.A3023T p.E1008V ATAAGGAAAAGAG . 156.0 83.0 129.0 0.0 . 114 . . Atlas-SNP YOD1 55432 hgsc.bcm.edu hg19 1 207224106 207224106 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . YOD1 NM_018566 exon1 c.C270T p.L90L TCCGACGAGGATT . 123.0 11.0 68.0 0.0 . 24 . . Atlas-SNP CR2 1380 hgsc.bcm.edu hg19 1 207641906 207641906 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CR2 NM_001006658 exon3 c.C480T p.I160I TATGATCCACAAT . 293.0 160.0 239.0 0.0 . 164 . . Atlas-SNP PCNXL2 80003 hgsc.bcm.edu hg19 1 233397906 233397906 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PCNXL2 NM_014801 exon3 c.A365G p.N122S TGCCTATTATTGC . 144.0 19.0 108.0 0.0 . 204 . . Atlas-SNP PLD5 200150 hgsc.bcm.edu hg19 1 242451667 242451667 + Nonsense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PLD5 NM_152666 exon4 c.T492A p.C164X TACCTGACATGCT . 559.0 59.0 424.0 0.0 . 216 . . Atlas-SNP ADSS 159 hgsc.bcm.edu hg19 1 244595870 244595870 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ADSS NM_001126 exon4 c.T383A p.I128N GATATAATAAGCC . 783.0 32.0 572.0 0.0 . 49 . . Atlas-SNP OR2T4 127074 hgsc.bcm.edu hg19 1 248524908 248524908 + Missense_Mutation SNP G G A rs140989725 TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 OR2T4,NS,carcinoma,0,1 OR2T4 NM_001004696 exon1 c.G26A p.S9N TGGCCAGCCACAC . 388.0 16.0 321.0 1.0 . 126 . . Atlas-SNP SEMA4F 10505 hgsc.bcm.edu hg19 2 74901762 74901762 + Silent SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SEMA4F NM_004263 exon8 c.G960C p.G320G GCTTGGGGCAGGG . 93.0 27.0 140.0 0.0 . 89 . . Atlas-SNP REG1B 5968 hgsc.bcm.edu hg19 2 79314699 79314699 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 REG1B,right_lower_lobe,carcinoma,0,1 REG1B NM_006507 exon2 c.C40A p.L14M ACATCAGGGAGGA . 106.0 30.0 148.0 0.0 . 83 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84852030 84852030 + Missense_Mutation SNP G G T rs368034415 alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAH6 NM_001370 exon29 c.G4358T p.R1453L AGGATCGCTGCTA . 86.0 34.0 129.0 0.0 . 194 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168097234 168097234 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . XIRP2 NM_001199143 exon8 c.G1129T p.V377F CAATATGTTCAAG . 164.0 71.0 184.0 0.0 . 914 . . Atlas-SNP CHL1 10752 hgsc.bcm.edu hg19 3 423911 423911 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CHL1 NM_001253388 exon15 c.G1926T p.R642S GAACAGGAGTGTT . 78.0 27.0 95.0 0.0 . 242 . . Atlas-SNP BSN 8927 hgsc.bcm.edu hg19 3 49694892 49694892 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . BSN NM_003458 exon5 c.C7903T p.R2635C CTTCCCCGCCACT . 34.0 7.0 54.0 0.0 . 272 . . Atlas-SNP TMPRSS7 344805 hgsc.bcm.edu hg19 3 111764780 111764780 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TMPRSS7 NM_001042575 exon4 c.G342A p.V114V CTCTGTGGTACTA . 322.0 117.0 372.0 0.0 . 126 . . Atlas-SNP CCDC14 64770 hgsc.bcm.edu hg19 3 123665744 123665744 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CCDC14 NM_022757 exon7 c.T1128A p.D376E CTGTACATCCTTC . 63.0 9.0 74.0 0.0 . 97 . . Atlas-SNP MBD4 8930 hgsc.bcm.edu hg19 3 129155490 129155490 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MBD4 NM_003925 exon3 c.A997T p.I333L TGTTTATGATGCC . 143.0 23.0 179.0 0.0 . 53 . . Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130289820 130289820 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . COL6A6 NM_001102608 exon6 c.G2560A p.A854T AAGTATGCTGATG . 88.0 16.0 93.0 0.0 . 497 . . Atlas-SNP NLGN1 22871 hgsc.bcm.edu hg19 3 173322666 173322666 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 NLGN1,caecum,adenoma,0,3 NLGN1 NM_014932 exon3 c.G278T p.R93L GGGAACGTCGTTT . 94.0 39.0 102.0 0.0 . 209 . . Atlas-SNP NLGN1 22871 hgsc.bcm.edu hg19 3 173525610 173525610 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NLGN1 NM_014932 exon4 c.C634A p.L212I TATCGACTTGGAG . 97.0 52.0 137.0 0.0 . 209 . . Atlas-SNP CD38 952 hgsc.bcm.edu hg19 4 15839760 15839760 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CD38 NM_001775 exon5 c.T631C p.S211P AATGGATCCCGCA . 53.0 33.0 59.0 0.0 . 36 . . Atlas-SNP ZNF827 152485 hgsc.bcm.edu hg19 4 146859553 146859553 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF827 NM_178835 exon1 c.A7T p.R3W TCCTCCTGGGCAT . 96.0 68.0 160.0 0.0 . 102 . . Atlas-SNP ZNF131 7690 hgsc.bcm.edu hg19 5 43161948 43161948 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF131 NM_003432 exon6 c.T867C p.T289T AAGAACTGGGAAA . 145.0 78.0 169.0 0.0 . 51 . . Atlas-SNP ELL2 22936 hgsc.bcm.edu hg19 5 95226823 95226823 + Missense_Mutation SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ELL2 NM_012081 exon10 c.G1745T p.G582V TTTGAGCCTGGAG . 145.0 86.0 119.0 0.0 . 63 . . Atlas-SNP DMXL1 1657 hgsc.bcm.edu hg19 5 118485268 118485268 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DMXL1 NM_005509 exon18 c.C3746T p.P1249L AAGAACCTGTTAT . 56.0 35.0 56.0 0.0 . 268 . . Atlas-SNP PRR16 51334 hgsc.bcm.edu hg19 5 120022233 120022233 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PRR16 NM_016644 exon3 c.C675T p.G225G CCAAGGCCCTCCC . 118.0 28.0 100.0 0.0 . 71 . . Atlas-SNP FSTL4 23105 hgsc.bcm.edu hg19 5 132585166 132585166 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FSTL4 NM_015082 exon7 c.G830A p.R277K GGTGGCCTCAGGT . 91.0 13.0 74.0 0.0 . 74 . . Atlas-SNP DNAJC18 202052 hgsc.bcm.edu hg19 5 138764241 138764241 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAJC18 NM_152686 exon3 c.C359A p.T120K GCATCTGTTGCTC . 81.0 26.0 60.0 0.0 . 30 . . Atlas-SNP MYLK4 340156 hgsc.bcm.edu hg19 6 2685624 2685624 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MYLK4 NM_001012418 exon6 c.G451A p.E151K TGATCTCGTTCTT . 92.0 25.0 75.0 0.0 . 74 . . Atlas-SNP PRL 5617 hgsc.bcm.edu hg19 6 22294684 22294684 + Missense_Mutation SNP A A T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PRL NM_000948 exon2 c.T158A p.L53Q TGGGACAGGACGA . 270.0 56.0 142.0 0.0 . 41 . . Atlas-SNP CDKN1A 1026 hgsc.bcm.edu hg19 6 36651881 36651881 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CDKN1A NM_001220778 exon2 c.G3T p.M1I CGCCATGTCAGAA . 50.0 45.0 56.0 0.0 . 27 . . Atlas-SNP CRIP3 401262 hgsc.bcm.edu hg19 6 43274043 43274043 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CRIP3 NM_206922 exon6 c.G409A p.V137M ACATCACCTTCTC . 53.0 50.0 43.0 0.0 . 30 . . Atlas-SNP CRIP3 401262 hgsc.bcm.edu hg19 6 43274045 43274045 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CRIP3 NM_206922 exon6 c.A407T p.K136M ATCACCTTCTCAG . 50.0 47.0 43.0 0.0 . 30 . . Atlas-SNP CRIP3 401262 hgsc.bcm.edu hg19 6 43274046 43274046 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CRIP3 NM_206922 exon6 c.A406G p.K136E TCACCTTCTCAGC . 50.0 48.0 43.0 0.0 . 30 . . Atlas-SNP GPR115 221393 hgsc.bcm.edu hg19 6 47681793 47681793 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GPR115 NM_153838 exon6 c.G812A p.G271E TCTTAGGAATGGT . 93.0 24.0 61.0 0.0 . 140 . . Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51824795 51824795 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PKHD1 NM_170724 exon36 c.A5781T p.R1927S GGACCATCTCCGG . 122.0 13.0 60.0 0.0 . 927 . . Atlas-SNP HTR1B 3351 hgsc.bcm.edu hg19 6 78172410 78172410 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . HTR1B NM_000863 exon1 c.C711T p.S237S AATCCGGGAGCGG . 23.0 19.0 37.0 0.0 . 55 . . Atlas-SNP GPR63 81491 hgsc.bcm.edu hg19 6 97246970 97246970 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GPR63 NM_030784 exon2 c.T638C p.L213S ACGGCTAAAGGAA . 25.0 15.0 58.0 0.0 . 60 . . Atlas-SNP RADIL 55698 hgsc.bcm.edu hg19 7 4874647 4874647 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RADIL NM_018059 exon4 c.C1007T p.T336I ACCACGGTCCTGT . 35.0 20.0 41.0 0.0 . 110 . . Atlas-SNP FIGNL1 63979 hgsc.bcm.edu hg19 7 50514900 50514900 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FIGNL1 NM_001042762 exon4 c.C86T p.P29L GCCTTCGGTCCGG . 70.0 20.0 82.0 0.0 . 73 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83590805 83590805 + Missense_Mutation SNP C C A rs318240753 bycluster;alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SEMA3A NM_006080 exon17 c.G2198T p.R733L TGCCGACGTTGTT . 182.0 76.0 234.0 0.0 . 121 . . Atlas-SNP OR2AE1 81392 hgsc.bcm.edu hg19 7 99474046 99474046 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . OR2AE1 NM_001005276 exon1 c.T611C p.I204T AGGAGAATGCTGC . 51.0 16.0 59.0 0.0 . 32 . . Atlas-SNP INSIG1 3638 hgsc.bcm.edu hg19 7 155094019 155094019 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . INSIG1 NM_005542 exon4 c.G596A p.G199D CTTTGGGCCTTTG . 209.0 41.0 246.0 0.0 . 20 . . Atlas-SNP ZBTB6 10773 hgsc.bcm.edu hg19 9 125674263 125674263 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZBTB6 NM_006626 exon2 c.A89G p.N30S AATAAATTCTGCT . 65.0 56.0 112.0 0.0 . 32 . . Atlas-SNP CDK9 1025 hgsc.bcm.edu hg19 9 130550943 130550943 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CDK9 NM_001261 exon6 c.G725T p.S242I TCATCAGTCAGCT . 59.0 44.0 144.0 1.0 . 22 . . Atlas-SNP TACR2 6865 hgsc.bcm.edu hg19 10 71175879 71175879 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TACR2 NM_001057 exon1 c.C201T p.V67V GTTGGTGACTGTG . 82.0 27.0 50.0 0.0 . 37 . . Atlas-SNP CPN1 1369 hgsc.bcm.edu hg19 10 101802222 101802222 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CPN1 NM_001308 exon9 c.G1339A p.E447K CCATTTCTTTCTT . 83.0 35.0 80.0 0.0 . 62 . . Atlas-SNP TUBGCP2 10844 hgsc.bcm.edu hg19 10 135099037 135099037 + Silent SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TUBGCP2 NM_001256617 exon13 c.G1902T p.T634T CAGCTCCGTGGGG . 39.0 16.0 49.0 0.0 . 79 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1026952 1026952 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MUC6 NM_005961 exon19 c.G2383A p.G795S CAACACCGGTGGC . 84.0 30.0 60.0 0.0 . 408 . . Atlas-SNP CHRM4 1132 hgsc.bcm.edu hg19 11 46406927 46406927 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CHRM4 NM_000741 exon1 c.G1181A p.R394Q CGCTCCCGGGCCG . 89.0 23.0 73.0 0.0 . 47 . . Atlas-SNP TNKS1BP1 85456 hgsc.bcm.edu hg19 11 57080609 57080609 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TNKS1BP1 NM_033396 exon5 c.C1553T p.S518F CTGCTGGAAACGG . 85.0 21.0 28.0 0.0 . 148 . . Atlas-SNP CNIH2 254263 hgsc.bcm.edu hg19 11 66050758 66050758 + Nonsense_Mutation SNP T T G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CNIH2 NM_182553 exon5 c.T351G p.Y117X CATGTATGATGCG . 33.0 19.0 62.0 0.0 . 15 . . Atlas-SNP CASP4 837 hgsc.bcm.edu hg19 11 104820474 104820474 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . CASP4 NM_001225 exon5 c.A577G p.T193A GTCTGGTAGCAAA . 50.0 10.0 101.0 0.0 . 57 . . Atlas-SNP KBTBD3 143879 hgsc.bcm.edu hg19 11 105925003 105925003 + Missense_Mutation SNP G G C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KBTBD3 NM_152433 exon3 c.C413G p.S138C GCTTTGGATAGGA . 72.0 26.0 138.0 0.0 . 59 . . Atlas-SNP OR8B8 26493 hgsc.bcm.edu hg19 11 124310110 124310110 + Missense_Mutation SNP C C T rs147220624 bycluster;by1000genomes;alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . OR8B8 NM_012378 exon1 c.G872A p.S291N CTCAGGCTATAAA . 35.0 16.0 66.0 0.0 . 76 . C|0.999;A|0.001 Atlas-SNP OR8B8 26493 hgsc.bcm.edu hg19 11 124310343 124310343 + Silent SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . OR8B8 NM_012378 exon1 c.C639A p.T213T GAAGATGGTGACT . 40.0 18.0 86.0 0.0 . 76 . . Atlas-SNP NRIP2 83714 hgsc.bcm.edu hg19 12 2944113 2944113 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NRIP2 NM_031474 exon1 c.C37T p.P13S AGGAGGGTCTCCA . 64.0 14.0 88.0 0.0 . 21 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124257438 124257438 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAH10 NM_207437 exon4 c.C271T p.P91S CCTCTTCCCGAGG . 59.0 32.0 53.0 0.0 . 888 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124257449 124257449 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . DNAH10 NM_207437 exon4 c.C282T p.F94F GGAGTTCCTGGAC . 58.0 33.0 58.0 0.0 . 888 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39265055 39265055 + Nonsense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . FREM2 NM_207361 exon1 c.G3574T p.E1192X CAGCCAGAGATGT . 55.0 44.0 136.0 0.0 . 385 . . Atlas-SNP COL4A2 1284 hgsc.bcm.edu hg19 13 111082761 111082761 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . COL4A2 NM_001846 exon9 c.A563G p.E188G CTGGAGAGCCTGG . 76.0 27.0 114.0 0.0 . 178 . . Atlas-SNP NFATC4 4776 hgsc.bcm.edu hg19 14 24844908 24844908 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NFATC4 NM_001198967 exon8 c.T2105A p.L702Q ACCGACTGCAGAG . 53.0 17.0 96.0 0.0 . 115 . . Atlas-SNP RHCG 51458 hgsc.bcm.edu hg19 15 90023512 90023512 + Nonsense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . RHCG NM_016321 exon4 c.C650A p.S217X AGGTCCGACTGGT . 44.0 19.0 44.0 0.0 . 49 . . Atlas-SNP IQGAP1 8826 hgsc.bcm.edu hg19 15 91020941 91020941 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . IQGAP1 NM_003870 exon26 c.C3149T p.T1050M ATCCTACGGTTAT . 66.0 15.0 63.0 0.0 . 140 . . Atlas-SNP TMC7 79905 hgsc.bcm.edu hg19 16 19049310 19049310 + Missense_Mutation SNP G G T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TMC7 NM_024847 exon8 c.G1120T p.G374W GTTTTAGGGGCAT . 161.0 85.0 177.0 0.0 . 75 . . Atlas-SNP WBP2 23558 hgsc.bcm.edu hg19 17 73851333 73851333 + Missense_Mutation SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . WBP2 NM_012478 exon1 c.A46G p.N16D TGTTATTGACGAT . 105.0 98.0 85.0 0.0 . 17 . . Atlas-SNP YES1 7525 hgsc.bcm.edu hg19 18 742994 742994 + Silent SNP T T C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . YES1 NM_005433 exon8 c.A984G p.R328R ATCATGTCTTAAT . 132.0 69.0 184.0 0.0 . 50 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 6975955 6975955 + Missense_Mutation SNP T T A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . LAMA1 NM_005559 exon45 c.A6470T p.Y2157F CCGAGGTAGAAGA . 89.0 24.0 109.0 0.0 . 458 . . Atlas-SNP MALT1 10892 hgsc.bcm.edu hg19 18 56415027 56415027 + Missense_Mutation SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . MALT1 NM_006785 exon17 c.G2428A p.E810K ACTGATGAAATAC . 81.0 35.0 100.0 0.0 . 55 . . Atlas-SNP PLCB1 23236 hgsc.bcm.edu hg19 20 8626827 8626827 + Silent SNP G G A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . PLCB1 NM_015192 exon5 c.A463A p.S155S GAAAAAGCGTAAG . 121.0 16.0 137.0 0.0 . 394 . . Atlas-SNP GDF5 8200 hgsc.bcm.edu hg19 20 34022378 34022378 + Missense_Mutation SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . GDF5 NM_000557 exon2 c.G835A p.D279N GCACATCCAGCAA . 51.0 12.0 50.0 0.0 . 66 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57767023 57767023 + Silent SNP C C A novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ZNF831 NM_178457 exon1 c.C949A p.R317R CTGCAGCGGCAGC . 16.0 10.0 19.0 0.0 . 287 . . Atlas-SNP USP25 29761 hgsc.bcm.edu hg19 21 17197365 17197365 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . USP25 NM_013396 exon12 c.A1289G p.Q430R TATTACAACAAAG . 156.0 36.0 275.0 0.0 . 156 . . Atlas-SNP TTC3 7267 hgsc.bcm.edu hg19 21 38538901 38538901 + Missense_Mutation SNP A A G novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TTC3 NM_001001894 exon33 c.A4385G p.Q1462R ACGTGCAGATGGT . 67.0 21.0 108.0 0.0 . 182 . . Atlas-SNP REPS2 9185 hgsc.bcm.edu hg19 X 17095520 17095520 + Silent SNP C C T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . REPS2 NM_004726 exon13 c.C1506T p.P502P CCAGCCCAGTGTG . 33.0 15.0 26.0 0.0 . 76 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 12610 12610 + Missense_Mutation SNP G G A rs367601393 alternate_allele TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . . ENST00000361567 exon1 c.G274A p.V92M ATCCCTGTAGCAT . 456.0 184.0 252.0 0.0 . . . C|0.009;T|0.991 Atlas-SNP KIF3B 9371 hgsc.bcm.edu hg19 20 30897746 30897746 + Frame_Shift_Del DEL A A - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . KIF3B NM_004798 exon2 c.165delG p.K55fs . . 68.0 19.0 95.0 0.0 . 75 . . Atlas-Indel,Pindel SIN3B 23309 hgsc.bcm.edu hg19 19 16989085 16989085 + Frame_Shift_Del DEL G G - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . SIN3B NM_015260 exon19 c.3141delC p.G1047fs . . 16.0 16.0 20.0 0.0 . 90 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74283386 74283387 + Frame_Shift_Del DEL TG TG - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ALB NM_000477 exon11 c.1427_1428del p.476_476del . . 23.0 20.0 59.0 0.0 . 132 . . Atlas-Indel,Pindel L3MBTL1 26013 hgsc.bcm.edu hg19 20 42143656 42143656 + Frame_Shift_Del DEL C C - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . L3MBTL1 NM_032107 exon5 c.443delA p.H148fs . . 65.0 22.0 42.0 0.0 . 105 . . Atlas-Indel,Pindel TTLL3 26140 hgsc.bcm.edu hg19 3 9870684 9870685 + Frame_Shift_Del DEL GA GA - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 GA GA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TTLL3 NM_001025930 exon10 c.1587_1588del p.529_530del . . 36.0 15.0 50.0 0.0 . 51 . . Atlas-Indel,Pindel NBEA 26960 hgsc.bcm.edu hg19 13 36229035 36229036 + Frame_Shift_Ins INS - - C novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . NBEA NM_015678 exon53 c.8016_8017insC p.V2672fs . . 45.0 30.0 73.0 0.0 . 340 . . Atlas-INDEL TRNT1 51095 hgsc.bcm.edu hg19 3 3186326 3186329 + Frame_Shift_Del DEL AGTT AGTT - novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 AGTT AGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . TRNT1 NM_182916 exon5 c.539_542del p.180_181del . . 151.0 23.0 204.0 0.0 . 34 . . Atlas-Indel,Pindel ALB 213 hgsc.bcm.edu hg19 4 74283297 74283298 + Frame_Shift_Ins INS - - T novel TCGA-G3-A25S-01A-11D-A16V-10 TCGA-G3-A25S-10A-01D-A16V-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c05adc19-2e01-4712-a35a-69eee4d40998 084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5 . ALB NM_000477 exon11 c.1339_1340insT p.L447fs . . 51.0 42.0 112.0 0.0 . 132 . . Atlas-INDEL