Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PHTF1	10745	hgsc.bcm.edu	hg19	1	114255975	114255975	+	Nonsense_Mutation	SNP	G	G	A	rs61730007	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PHTF1	NM_006608	exon7	c.C709T	p.Q237X	GACATTGTCTCCT	.	216.0	72.0	175.0	0.0	.	69	.	G|0.991;T|0.009	Atlas-SNP
LGR6	59352	hgsc.bcm.edu	hg19	1	202249945	202249945	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LGR6	NM_001017403	exon6	c.C681A	p.T227T	GGGGACCCACAGC	.	73.0	26.0	44.0	0.0	.	102	.	.	Atlas-SNP
OR2T11	127077	hgsc.bcm.edu	hg19	1	248790035	248790035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR2T11	NM_001001964	exon1	c.T395C	p.L132P	TTCATCAGGACTG	.	88.0	40.0	86.0	0.0	.	64	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54853192	54853192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SPTBN1	NM_003128	exon12	c.G1465A	p.E489K	GAGCTCGAGGCCG	.	108.0	42.0	134.0	0.0	.	378	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141660519	141660519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	LRP1B,NS,malignant_melanoma,0,1	LRP1B	NM_018557	exon23	c.G3736T	p.D1246Y	CTACATCCAGCTT	.	116.0	46.0	120.0	1.0	.	1315	.	.	Atlas-SNP
CACNB4	785	hgsc.bcm.edu	hg19	2	152695776	152695776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CACNB4	NM_000726	exon14	c.T1420A	p.L474M	AAGACAAGCGGTT	.	180.0	77.0	173.0	0.0	.	108	.	.	Atlas-SNP
RFTN2	130132	hgsc.bcm.edu	hg19	2	198436936	198436936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RFTN2	NM_144629	exon9	c.C1302A	p.D434E	GGTTGTGTCTAAT	.	170.0	62.0	162.0	0.0	.	68	.	.	Atlas-SNP
ANKMY1	51281	hgsc.bcm.edu	hg19	2	241463777	241463777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANKMY1	NM_016552	exon7	c.G1090A	p.V364I	TTGGAACAACTGG	.	56.0	17.0	65.0	0.0	.	112	.	.	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	hg19	3	18462375	18462375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SATB1	NM_002971	exon2	c.A85C	p.K29Q	CAATCTTGGCTGG	.	164.0	95.0	134.0	0.0	.	96	.	.	Atlas-SNP
MB21D2	151963	hgsc.bcm.edu	hg19	3	192516790	192516790	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MB21D2	NM_178496	exon2	c.G861A	p.W287X	CAGCCGCCATTCA	.	79.0	47.0	56.0	0.0	.	75	.	.	Atlas-SNP
LNX1	84708	hgsc.bcm.edu	hg19	4	54373548	54373548	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	LNX1,NS,carcinoma,0,1	LNX1	NM_001126328	exon4	c.G711C	p.G237G	TGCACTCCCGCTC	.	110.0	37.0	115.0	0.0	.	139	.	.	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	hg19	4	77661969	77661969	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SHROOM3	NM_020859	exon5	c.G2643A	p.P881P	GAGGCCGGACGCT	.	9.0	6.0	5.0	0.0	.	134	.	.	Atlas-SNP
MRPL1	65008	hgsc.bcm.edu	hg19	4	78806454	78806454	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MRPL1	NM_020236	exon4	c.A447G	p.P149P	ATACCCATTTGCT	.	127.0	55.0	131.0	0.0	.	37	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26889956	26889956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CDH9	NM_016279	exon9	c.A1501G	p.K501E	CAGGTTTTGCATT	.	139.0	48.0	95.0	0.0	.	305	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82836955	82836955	+	Silent	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	VCAN	NM_004385	exon8	c.T8133A	p.A2711A	AAAAGCTGAAGCA	.	94.0	27.0	88.0	0.0	.	498	.	.	Atlas-SNP
SKP1	6500	hgsc.bcm.edu	hg19	5	133494206	133494206	+	Silent	SNP	A	A	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SKP1	NM_170679	exon5	c.T396G	p.P132P	CTCCTCAGGAGTT	.	126.0	44.0	106.0	0.0	.	10	.	.	Atlas-SNP
TMEM173	340061	hgsc.bcm.edu	hg19	5	138856001	138856001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMEM173	NM_198282	exon8	c.G985T	p.V329F	GGAGAACCTCCTG	.	67.0	13.0	33.0	0.0	.	19	.	.	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160033981	160033981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ATP10B	NM_025153	exon19	c.C2951A	p.S984Y	GTGATGGATGGTG	.	300.0	166.0	187.0	1.0	.	201	.	.	Atlas-SNP
GMNN	51053	hgsc.bcm.edu	hg19	6	24785914	24785914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GMNN	NM_001251991	exon7	c.G517C	p.E173Q	AATCAGGAATTTG	.	143.0	40.0	71.0	0.0	.	19	.	.	Atlas-SNP
OR12D2	26529	hgsc.bcm.edu	hg19	6	29364910	29364910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR12D2	NM_013936	exon1	c.C434A	p.T145K	CCATCACAATCTG	.	227.0	63.0	160.0	0.0	.	42	.	.	Atlas-SNP
HSPA1L	3305	hgsc.bcm.edu	hg19	6	31778524	31778524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HSPA1L	NM_005527	exon2	c.G1226A	p.G409E	ACGCCCCCAGCCG	.	149.0	38.0	104.0	0.0	.	185	.	.	Atlas-SNP
IP6K3	117283	hgsc.bcm.edu	hg19	6	33690707	33690707	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IP6K3	NM_001142883	exon7	c.C1023T	p.G341G	CGGGCTGCCTGGG	.	166.0	41.0	107.0	0.0	.	52	.	.	Atlas-SNP
FIG4	9896	hgsc.bcm.edu	hg19	6	110059526	110059526	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FIG4	NM_014845	exon7	c.647-2A>G	.	TTTTTCAGGGGTA	.	90.0	54.0	121.0	0.0	.	77	.	.	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	hg19	7	34118587	34118587	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	BMPER,NS,carcinoma,0,1	BMPER	NM_133468	exon13	c.G1197T	p.S399S	TGCCTCGCCCTTC	.	70.0	21.0	58.0	0.0	.	131	.	.	Atlas-SNP
TYW1	55253	hgsc.bcm.edu	hg19	7	66463919	66463919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TYW1	NM_018264	exon3	c.G251T	p.G84V	TTTATGGTTCTCA	.	131.0	35.0	89.0	0.0	.	71	.	.	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	hg19	7	113519285	113519285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PPP1R3A	NM_002711	exon4	c.G1862A	p.R621K	CCAGTTCTTGATG	.	309.0	163.0	273.0	0.0	.	317	.	.	Atlas-SNP
WNT2	7472	hgsc.bcm.edu	hg19	7	116955172	116955172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	WNT2	NM_003391	exon3	c.G541A	p.D181N	TGGCATCCTTTCC	.	354.0	94.0	195.0	0.0	.	56	.	.	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	hg19	7	150644109	150644109	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KCNH2	NM_000238	exon14	c.T3186A	p.T1062T	CAGGACAGTGGCC	.	166.0	46.0	98.0	0.0	.	157	.	.	Atlas-SNP
PI15	51050	hgsc.bcm.edu	hg19	8	75761417	75761417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PI15	NM_015886	exon6	c.T706A	p.Y236N	CCAAGTTATGGGG	.	259.0	65.0	191.0	0.0	.	73	.	.	Atlas-SNP
ANGPT1	284	hgsc.bcm.edu	hg19	8	108334350	108334350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANGPT1	NM_001199859	exon4	c.A582T	p.L194F	ATGTTCTAATAAA	.	210.0	45.0	129.0	0.0	.	111	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125072474	125072474	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FER1L6	NM_001039112	exon23	c.C2928G	p.T976T	CATCACCCAGATC	.	71.0	13.0	52.0	0.0	.	268	.	.	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	hg19	9	18777712	18777712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	ADAMTSL1_ENST00000380548,NS,neuroblastoma,0,1	ADAMTSL1	NM_001040272	exon19	c.G3485A	p.R1162H	CACACCGCAAGCC	.	96.0	13.0	68.0	0.0	.	306	.	.	Atlas-SNP
ZNF618	114991	hgsc.bcm.edu	hg19	9	116731402	116731402	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZNF618	NM_133374	exon2	c.C39T	p.D13D	GGCTGACGGAGCC	.	20.0	16.0	30.0	0.0	.	184	.	.	Atlas-SNP
FANK1	92565	hgsc.bcm.edu	hg19	10	127697046	127697046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FANK1	NM_145235	exon8	c.G776T	p.R259M	ATCAGAGGGTGGC	.	109.0	41.0	89.0	0.0	.	46	.	.	Atlas-SNP
IFITM5	387733	hgsc.bcm.edu	hg19	11	299408	299408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IFITM5	NM_001025295	exon1	c.C83T	p.A28V	TGCGGGGCCCCCA	.	61.0	29.0	35.0	0.0	.	12	.	.	Atlas-SNP
LGR4	55366	hgsc.bcm.edu	hg19	11	27389536	27389536	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LGR4	NM_018490	exon18	c.G2734T	p.E912X	AATCTTCTTCATC	.	58.0	17.0	83.0	0.0	.	87	.	.	Atlas-SNP
DAGLA	747	hgsc.bcm.edu	hg19	11	61502408	61502408	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DAGLA	NM_006133	exon10	c.C1062A	p.I354I	TGCCATCCGGCGC	.	37.0	11.0	56.0	0.0	.	109	.	.	Atlas-SNP
OR10G8	219869	hgsc.bcm.edu	hg19	11	123900948	123900948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR10G8	NM_001004464	exon1	c.T619C	p.S207P	GTGGCCTCGGGCT	.	215.0	95.0	246.0	0.0	.	132	.	.	Atlas-SNP
FOXRED1	55572	hgsc.bcm.edu	hg19	11	126145999	126145999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FOXRED1	NM_017547	exon8	c.A856G	p.I286V	TGCGCCATTGTGA	.	81.0	25.0	94.0	0.0	.	38	.	.	Atlas-SNP
ADCY6	112	hgsc.bcm.edu	hg19	12	49176704	49176704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	ADCY6,bladder,carcinoma,0,1	ADCY6	NM_020983	exon2	c.G514T	p.A172S	CGGGTGCGGCGTG	.	52.0	23.0	43.0	0.0	.	81	.	.	Atlas-SNP
HNRNPA1	3178	hgsc.bcm.edu	hg19	12	54676893	54676893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HNRNPA1	NM_031157	exon8	c.C782G	p.S261C	GTTACTCTGGAGG	.	81.0	34.0	71.0	0.0	.	72	.	.	Atlas-SNP
ANO4	121601	hgsc.bcm.edu	hg19	12	101520844	101520844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	ANO4,rectum,carcinoma,0,1	ANO4	NM_178826	exon26	c.C2759A	p.P920Q	AGTGGCCGTGACC	.	73.0	26.0	87.0	0.0	.	183	.	.	Atlas-SNP
KSR2	283455	hgsc.bcm.edu	hg19	12	118298110	118298110	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KSR2	NM_173598	exon2	c.A220T	p.K74X	CCTCCTTGCGCAC	.	23.0	8.0	24.0	0.0	.	208	.	.	Atlas-SNP
ZNF410	57862	hgsc.bcm.edu	hg19	14	74363143	74363143	+	Silent	SNP	G	G	A	rs150263864		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZNF410	NM_001242924	exon5	c.G345A	p.P115P	ATCCCCGGAGTTT	.	122.0	33.0	100.0	0.0	.	25	.	G|1.000;A|0.000	Atlas-SNP
GSTZ1	2954	hgsc.bcm.edu	hg19	14	77796672	77796672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GSTZ1	NM_145870	exon8	c.G494T	p.C165F	ATCTGTGCTTGGT	.	72.0	27.0	79.0	0.0	.	35	.	.	Atlas-SNP
BTBD7	55727	hgsc.bcm.edu	hg19	14	93720038	93720038	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BTBD7	NM_001002860	exon7	c.C1707A	p.I569I	AACATAGATGCCA	.	90.0	33.0	72.0	0.0	.	112	.	.	Atlas-SNP
NARG2	79664	hgsc.bcm.edu	hg19	15	60740303	60740303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NARG2	NM_024611	exon11	c.G2161A	p.E721K	GGTATTCCGATGT	.	77.0	31.0	62.0	0.0	.	82	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	360070	360070	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	AXIN1	NM_181050	exon5	c.1020-1G>T	.	CCATCCCTGTCCA	.	24.0	12.0	35.0	0.0	.	290	.	.	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	hg19	17	1580416	1580416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PRPF8	NM_006445	exon15	c.T2035A	p.S679T	AATGTGACTCCAC	.	59.0	21.0	53.0	0.0	.	169	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A	rs121913344		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	TP53_ENST00000455263,NS,adenocarcinoma,0,166	TP53	NM_000546	exon8	c.C916T	p.R306X	TACCTCGCTTAGT	.	39.0	21.0	64.0	1.0	.	33396	.	.	Atlas-SNP
TMEM88	92162	hgsc.bcm.edu	hg19	17	7758491	7758491	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMEM88	NM_203411	exon1	c.C99T	p.A33A	AACAGCCCAGAAT	.	25.0	18.0	46.0	0.0	.	6	.	.	Atlas-SNP
CHD3	1107	hgsc.bcm.edu	hg19	17	7811224	7811224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CHD3	NM_001005271	exon34	c.G5216T	p.G1739V	TAAAAGGTGACCG	.	24.0	15.0	74.0	0.0	.	169	.	.	Atlas-SNP
ODF4	146852	hgsc.bcm.edu	hg19	17	8243610	8243610	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ODF4	NM_153007	exon1	c.C241T	p.Q81X	ATGGCCCAGGTGT	.	41.0	28.0	67.0	0.0	.	23	.	.	Atlas-SNP
SLFN14	342618	hgsc.bcm.edu	hg19	17	33884944	33884944	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SLFN14	NM_001129820	exon1	c.C138A	p.I46I	AGCCCGGATAATT	.	152.0	61.0	137.0	0.0	.	43	.	.	Atlas-SNP
GOSR2	9570	hgsc.bcm.edu	hg19	17	45015970	45015970	+	Silent	SNP	T	T	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GOSR2	NM_004287	exon6	c.T483G	p.T161T	GGGGACTCAGAAG	.	68.0	22.0	69.0	0.0	.	38	.	.	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	hg19	17	73840324	73840324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	UNC13D	NM_199242	exon1	c.C95T	p.P32L	GGCGGGGGATCCT	.	21.0	10.0	27.0	0.0	.	68	.	.	Atlas-SNP
POTEC	388468	hgsc.bcm.edu	hg19	18	14542851	14542851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	POTEC,NS,carcinoma,0,1	POTEC	NM_001137671	exon1	c.G295T	p.G99C	ACTTGCCCATCTT	.	268.0	91.0	247.0	0.0	.	129	.	.	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	hg19	18	52901914	52901914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TCF4	NM_001243226	exon17	c.G1657A	p.V553M	TCCCCACCTGAAA	.	27.0	16.0	45.0	0.0	.	178	.	.	Atlas-SNP
NETO1	81832	hgsc.bcm.edu	hg19	18	70417752	70417752	+	Silent	SNP	G	G	A	rs145217972		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NETO1	NM_001201465	exon9	c.C1086T	p.I362I	CTGTACGATGACA	.	71.0	21.0	58.0	0.0	.	178	.	G|1.000;A|0.000	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9057255	9057255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MUC16	NM_024690	exon3	c.C30191A	p.T10064K	GTGCTTGTGTCTG	.	90.0	45.0	110.0	0.0	.	4315	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13387893	13387893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CACNA1A	NM_001127221	exon23	c.T3875C	p.M1292T	ATCACCATCTCAA	.	55.0	17.0	48.0	0.0	.	715	.	.	Atlas-SNP
KIAA0355	9710	hgsc.bcm.edu	hg19	19	34810943	34810943	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KIAA0355	NM_014686	exon3	c.C627T	p.G209G	CAGCGGCAGTGGC	.	95.0	41.0	107.0	0.0	.	105	.	.	Atlas-SNP
NUP62	23636	hgsc.bcm.edu	hg19	19	50411919	50411919	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NUP62	NM_153719	exon3	c.G1146T	p.V382V	CAGCTTCACCTTC	.	58.0	22.0	54.0	0.0	.	50	.	.	Atlas-SNP
P2RX6	9127	hgsc.bcm.edu	hg19	22	21380718	21380718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	NM_005446	exon12	c.C1138T	p.P380S	AAGGCCCCGAAAG	.	57.0	19.0	65.0	0.0	.	.	.	.	Atlas-SNP
MAPK1	5594	hgsc.bcm.edu	hg19	22	22160192	22160192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAPK1	NM_002745	exon3	c.C439T	p.H147Y	CACGGTGCAGAAC	.	135.0	46.0	156.0	0.0	.	38	.	.	Atlas-SNP
BRD1	23774	hgsc.bcm.edu	hg19	22	50169766	50169766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BRD1	NM_014577	exon10	c.G2770A	p.A924T	CCGAGGCGGCGGC	.	12.0	7.0	7.0	0.0	.	144	.	.	Atlas-SNP
RGAG1	57529	hgsc.bcm.edu	hg19	X	109695878	109695878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RGAG1	NM_020769	exon3	c.C2033T	p.A678V	CTGGAGCAATGTC	.	48.0	38.0	79.0	0.0	.	168	.	.	Atlas-SNP
ARHGAP36	158763	hgsc.bcm.edu	hg19	X	130219933	130219933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ARHGAP36	NM_144967	exon9	c.G1151T	p.G384V	TGTTTGGATCTGC	.	80.0	61.0	80.0	0.0	.	171	.	.	Atlas-SNP
USP9Y	8287	hgsc.bcm.edu	hg19	Y	14968377	14968377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	USP9Y	NM_004654	exon43	c.G7177T	p.V2393L	TGTATGGTAGCTC	.	92.0	75.0	118.0	0.0	.	49	.	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	hg19	22	29885586	29885587	+	In_Frame_Ins	INS	-	-	AGTCCCCTGAGAAGGCCA	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.,1	NEFH	NM_021076	exon4	c.1957_1958insAGTCCCCTGAGAAGGCCA	p.K653delinsKSPEKAK	.	.	111.0	69.0	103.0	0.0	.	178	.	.	Atlas-INDEL
SHANK1	50944	hgsc.bcm.edu	hg19	19	51169520	51169526	+	Frame_Shift_Del	DEL	CCCACTG	CCCACTG	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	CCCACTG	CCCACTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SHANK1	NM_016148	exon22	c.5692_5698del	p.1898_1900del	.	.	42.0	19.0	33.0	0.0	.	210	.	.	Atlas-Indel,Pindel
KIF14	9928	hgsc.bcm.edu	hg19	1	200587131	200587131	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KIF14	NM_014875	exon2	c.722delA	p.Q241fs	.	.	135.0	56.0	156.0	0.0	.	156	.	.	Atlas-Indel,Pindel
TSC1	7248	hgsc.bcm.edu	hg19	9	135786464	135786464	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	TSC1,NS,neuroblastoma,0,1	TSC1	NM_001162426	exon11	c.1067delC	p.T356fs	.	.	49.0	28.0	86.0	0.0	.	167	.	.	Atlas-Indel,Pindel