Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SSU72 29101 hgsc.bcm.edu hg19 1 1509930 1509930 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e SSU72_ENST00000359060,NS,carcinoma,0,2 SSU72 NM_014188 exon1 c.C8T p.S3L GGGGACGACGGCA . 60.0 3.0 184.0 0.0 . 15 . . Atlas-SNP DFFB 1677 hgsc.bcm.edu hg19 1 3775365 3775365 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e DFFB,NS,carcinoma,0,2 DFFB NM_004402 exon2 c.C198T p.N66N CGACAACGCCGAG . 94.0 4.0 104.0 0.0 . 30 . . Atlas-SNP TAS1R1 80835 hgsc.bcm.edu hg19 1 6638906 6638906 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TAS1R1 NM_138697 exon6 c.G1788A p.V596V CCCTGTGGTGAGG . 100.0 5.0 107.0 0.0 . 76 . . Atlas-SNP UBE4B 10277 hgsc.bcm.edu hg19 1 10166449 10166449 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e UBE4B_ENST00000343090,NS,carcinoma,0,1 UBE4B NM_001105562 exon7 c.T1004C p.V335A ACACTGTCACTCA . 60.0 3.0 102.0 0.0 . 233 . . Atlas-SNP SPEN 23013 hgsc.bcm.edu hg19 1 16263967 16263967 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SPEN NM_015001 exon12 c.T10336C p.S3446P CCAGTCTCTCTTC . 74.0 6.0 50.0 0.0 . 374 . . Atlas-SNP EPHB2 2048 hgsc.bcm.edu hg19 1 23232489 23232489 + Missense_Mutation SNP G G T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . EPHB2 NM_004442 exon10 c.G1778T p.G593V CCCCAGGCATGAA . 89.0 38.0 99.0 0.0 . 257 . . Atlas-SNP ASAP3 55616 hgsc.bcm.edu hg19 1 23759640 23759640 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ASAP3 NM_017707 exon22 c.T2253C p.C751C CGGGGGACAGTCC . 164.0 7.0 118.0 0.0 . 65 . . Atlas-SNP GMEB1 10691 hgsc.bcm.edu hg19 1 29040628 29040628 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GMEB1 NM_006582 exon10 c.T1065C p.D355D CCAGGATCACAGG . 89.0 4.0 88.0 0.0 . 28 . . Atlas-SNP SFPQ 6421 hgsc.bcm.edu hg19 1 35656352 35656352 + Missense_Mutation SNP T T G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SFPQ NM_005066 exon3 c.A1262C p.K421T GCTGGCTTAGAAG . 155.0 57.0 137.0 0.0 . 51 . . Atlas-SNP KIAA0319L 79932 hgsc.bcm.edu hg19 1 35928258 35928258 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KIAA0319L NM_024874 exon8 c.T1258C p.S420P GCAAAGAGATCTC . 63.0 4.0 54.0 0.0 . 156 . . Atlas-SNP MYCL1 4610 hgsc.bcm.edu hg19 1 40363211 40363211 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e MYCL1_ENST00000397332,NS,carcinoma,0,1 MYCL1 NM_001033082 exon3 c.A1018G p.T340A CCAGGGTGGGCAC . 108.0 5.0 101.0 0.0 . 36 . . Atlas-SNP ZNF691 51058 hgsc.bcm.edu hg19 1 43316763 43316763 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZNF691 NM_001242739 exon4 c.T227C p.L76P AGAGCCTGTCGGA . 95.0 4.0 67.0 0.0 . 30 . . Atlas-SNP ERI3 79033 hgsc.bcm.edu hg19 1 44778868 44778868 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ERI3 NM_024066 exon5 c.T639C p.G213G TGGCTGACCATCC . 154.0 7.0 126.0 0.0 . 39 . . Atlas-SNP NRD1 4898 hgsc.bcm.edu hg19 1 52306079 52306079 + Missense_Mutation SNP T T A rs62648104 bycluster TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NRD1 NM_001101662 exon2 c.A449T p.E150V TCTTCCTCCACCT . 261.0 44.0 239.0 0.0 . 89 . T|0.024;A|0.976 Atlas-SNP AK4 205 hgsc.bcm.edu hg19 1 65690526 65690526 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . AK4 NM_203464 exon5 c.T530C p.V177A AAGACGTGGCAAA . 122.0 6.0 108.0 0.0 . 22 . . Atlas-SNP TCTEX1D1 200132 hgsc.bcm.edu hg19 1 67241997 67241997 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TCTEX1D1 NM_152665 exon4 c.C247G p.H83D GTCAATCATATTT . 231.0 95.0 174.0 0.0 . 27 . . Atlas-SNP SLC35D1 23169 hgsc.bcm.edu hg19 1 67512974 67512974 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLC35D1 NM_015139 exon7 c.T610C p.Y204H TTACGTATGCACC . 75.0 4.0 61.0 0.0 . 22 . . Atlas-SNP PTGER3 5733 hgsc.bcm.edu hg19 1 71478142 71478142 + Missense_Mutation SNP T T A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PTGER3 NM_001126044 exon2 c.A923T p.N308I GTCTGATTGAAGA . 99.0 35.0 65.0 0.0 . 246 . . Atlas-SNP FAM73A 374986 hgsc.bcm.edu hg19 1 78309009 78309009 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FAM73A NM_001270384 exon8 c.A913G p.T305A GATATCACCATGA . 63.0 4.0 47.0 0.0 . 56 . . Atlas-SNP RPAP2 79871 hgsc.bcm.edu hg19 1 92789250 92789250 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RPAP2 NM_024813 exon8 c.C773G p.S258C CTAACTCCAAACA . 149.0 73.0 125.0 0.0 . 48 . . Atlas-SNP MTF2 22823 hgsc.bcm.edu hg19 1 93575851 93575851 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MTF2 NM_001164392 exon2 c.A70G p.T24A CAAAAGACCCCAA . 140.0 8.0 120.0 0.0 . 51 . . Atlas-SNP F3 2152 hgsc.bcm.edu hg19 1 95001634 95001634 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . F3 NM_001993 exon3 c.A299G p.K100R GTCTGCTTCACAT . 121.0 5.0 108.0 0.0 . 21 . . Atlas-SNP GPSM2 29899 hgsc.bcm.edu hg19 1 109465167 109465167 + Silent SNP T T A rs79761186 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GPSM2 NM_013296 exon13 c.T1569A p.T523T AACAACTTCTTCC . 25.0 8.0 10.0 0.0 . 56 . . Atlas-SNP GPSM2 29899 hgsc.bcm.edu hg19 1 109465168 109465168 + Missense_Mutation SNP T T A rs201481482 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GPSM2 NM_013296 exon13 c.T1570A p.S524T ACAACTTCTTCCA . 25.0 8.0 7.0 0.0 . 56 . . Atlas-SNP RSBN1 54665 hgsc.bcm.edu hg19 1 114354478 114354478 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RSBN1 NM_018364 exon1 c.A557G p.K186R TGGCCCTTATGCT . 74.0 4.0 77.0 0.0 . 71 . . Atlas-SNP PTPN22 26191 hgsc.bcm.edu hg19 1 114380814 114380814 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PTPN22 NM_015967 exon13 c.C1208T p.P403L ACTATTGGAAATG . 124.0 45.0 126.0 0.0 . 90 . . Atlas-SNP AMPD1 270 hgsc.bcm.edu hg19 1 115215782 115215782 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . AMPD1 NM_000036 exon16 c.T2296C p.C766R CATAACACCAGGT . 149.0 6.0 164.0 0.0 . 223 . . Atlas-SNP IGSF3 3321 hgsc.bcm.edu hg19 1 117122269 117122269 + Missense_Mutation SNP G G C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . IGSF3 NM_001542 exon11 c.C3139G p.P1047A CTGTTGGGTCGTC . 89.0 5.0 93.0 0.0 . 294 . . Atlas-SNP TTF2 8458 hgsc.bcm.edu hg19 1 117634026 117634026 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TTF2 NM_003594 exon16 c.A2665G p.S889G CCATTCAGTAGAG . 71.0 4.0 46.0 0.0 . 92 . . Atlas-SNP CHD1L 9557 hgsc.bcm.edu hg19 1 146737617 146737617 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CHD1L NM_004284 exon8 c.C766G p.P256A TTGCAGCCATTTC . 94.0 4.0 109.0 0.0 . 72 . . Atlas-SNP MCL1 4170 hgsc.bcm.edu hg19 1 150551951 150551951 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MCL1 NM_182763 exon1 c.C56T p.A19V AAGCCGGCCCCCC . 138.0 33.0 82.0 0.0 . 27 . . Atlas-SNP THEM4 117145 hgsc.bcm.edu hg19 1 151867506 151867506 + Missense_Mutation SNP T T G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . THEM4 NM_053055 exon2 c.A264C p.Q88H GAAGTCTTGAATC . 241.0 11.0 97.0 0.0 . 19 . . Atlas-SNP DENND4B 9909 hgsc.bcm.edu hg19 1 153907287 153907287 + Missense_Mutation SNP G G C rs199597671 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DENND4B NM_014856 exon18 c.C2722G p.Q908E GCTGCTGCTGCTG . 143.0 48.0 14.0 0.0 . 210 . . Atlas-SNP DENND4B 9909 hgsc.bcm.edu hg19 1 153907315 153907315 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DENND4B NM_014856 exon18 c.G2694A p.Q898Q CTGCTGCTGCTGC . 182.0 14.0 86.0 0.0 . 210 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155448559 155448559 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ASH1L NM_018489 exon3 c.A4102G p.S1368G TAAGGCTGTGCAT . 146.0 6.0 50.0 0.0 . 279 . . Atlas-SNP YY1AP1 55249 hgsc.bcm.edu hg19 1 155630158 155630158 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . YY1AP1 NM_001198903 exon10 c.T1957C p.S653P CAGGGGAGGGCAT . 247.0 14.0 82.0 0.0 . 104 . . Atlas-SNP IFI16 3428 hgsc.bcm.edu hg19 1 158988074 158988074 + Missense_Mutation SNP A A T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . IFI16 NM_005531 exon5 c.A605T p.K202I TCCAAAAACGCCC . 364.0 120.0 128.0 0.0 . 111 . . Atlas-SNP ATP1A4 480 hgsc.bcm.edu hg19 1 160151564 160151564 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ATP1A4 NM_144699 exon19 c.T2827C p.S943P ATCATCTCCAAGA . 447.0 18.0 175.0 0.0 . 167 . . Atlas-SNP F5 2153 hgsc.bcm.edu hg19 1 169555549 169555549 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . F5 NM_000130 exon1 c.A76G p.T26A CTTCTGTCCCTTG . 220.0 10.0 96.0 0.0 . 301 . . Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171510373 171510373 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_015172 exon16 c.C3762T p.V1254V AGTTGTCCCCAAA . 431.0 29.0 157.0 0.0 . . . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179564922 179564922 + Nonsense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TDRD5 NM_173533 exon4 c.C800G p.S267X AGACTTCAAGACT . 259.0 42.0 102.0 0.0 . 149 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181452881 181452881 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CACNA1E NM_001205293 exon1 c.A1G p.M1V CTCAGGATGGCTC . 75.0 4.0 39.0 0.0 . 778 . . Atlas-SNP NVL 4931 hgsc.bcm.edu hg19 1 224514099 224514099 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NVL NM_001243147 exon2 c.T125C p.V42A CTGTACACTCTTT . 110.0 5.0 50.0 0.0 . 74 . . Atlas-SNP JMJD4 65094 hgsc.bcm.edu hg19 1 227922402 227922402 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . JMJD4 NM_023007 exon2 c.C516T p.G172G GGAGTAGCCCGCC . 562.0 285.0 287.0 0.0 . 28 . . Atlas-SNP HEATR1 55127 hgsc.bcm.edu hg19 1 236749177 236749177 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HEATR1 NM_018072 exon16 c.G1992C p.M664I CTCAATCATCTTC . 274.0 17.0 149.0 0.0 . 197 . . Atlas-SNP MTR 4548 hgsc.bcm.edu hg19 1 237038042 237038042 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MTR NM_000254 exon24 c.A2490G p.S830S CCTGTCAGGACTC . 75.0 4.0 31.0 0.0 . 127 . . Atlas-SNP PXDN 7837 hgsc.bcm.edu hg19 2 1677567 1677567 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PXDN NM_012293 exon9 c.A866G p.K289R TCTGTCTTCATGC . 121.0 5.0 108.0 0.0 . 255 . . Atlas-SNP ALLC 55821 hgsc.bcm.edu hg19 2 3729256 3729256 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ALLC NM_018436 exon6 c.A331G p.R111G GGAACCAGGACAG . 79.0 4.0 79.0 0.0 . 61 . . Atlas-SNP HS1BP3 64342 hgsc.bcm.edu hg19 2 20823705 20823705 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HS1BP3 NM_022460 exon6 c.G871T p.G291W TGGGCCCTCCACT . 103.0 33.0 84.0 0.0 . 33 . . Atlas-SNP ALK 238 hgsc.bcm.edu hg19 2 29451807 29451807 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ALK NM_004304 exon16 c.G2758T p.G920C CGAAACCCCCTCT . 385.0 164.0 331.0 1.0 . 533 . . Atlas-SNP CEP68 23177 hgsc.bcm.edu hg19 2 65296913 65296913 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CEP68 NM_015147 exon2 c.T335C p.L112P GAGACCTTCTGCT . 57.0 4.0 54.0 0.0 . 69 . . Atlas-SNP REV1 51455 hgsc.bcm.edu hg19 2 100029414 100029414 + Splice_Site SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . REV1 NM_016316 exon14 c.1952-1G>A . CAACTCCTAGGAA . 117.0 46.0 120.0 0.0 . 100 . . Atlas-SNP ARHGEF4 50649 hgsc.bcm.edu hg19 2 131801915 131801915 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ARHGEF4 NM_032995 exon12 c.A1643G p.D548G GGCTGGACATGGA . 209.0 9.0 162.0 0.0 . 89 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141819744 141819744 + Missense_Mutation SNP T T G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . LRP1B NM_018557 exon8 c.A1112C p.Q371P GCTGGCTGCTCTG . 173.0 62.0 163.0 0.0 . 1315 . . Atlas-SNP LY75 4065 hgsc.bcm.edu hg19 2 160676430 160676430 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . LY75 NM_002349 exon29 c.T3960C p.N1320N AGACTTATCTAGA . 98.0 4.0 64.0 0.0 . 151 . . Atlas-SNP SCN3A 6328 hgsc.bcm.edu hg19 2 166032778 166032778 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SCN3A NM_001081676 exon3 c.A127G p.N43D CATCATTATCTTG . 170.0 22.0 119.0 0.0 . 544 . . Atlas-SNP SCN3A 6328 hgsc.bcm.edu hg19 2 166032779 166032779 + Missense_Mutation SNP A A T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SCN3A NM_001081676 exon3 c.T126A p.D42E ATCATTATCTTGT . 170.0 9.0 121.0 0.0 . 544 . . Atlas-SNP PDE11A 50940 hgsc.bcm.edu hg19 2 178545631 178545631 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e PDE11A_ENST00000358450,NS,carcinoma,0,2 PDE11A NM_016953 exon16 c.G2346T p.E782D TCTCCTCCTGCAG . 24.0 10.0 38.0 0.0 . 283 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179659759 179659759 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TTN NM_001267550 exon7 c.A1135G p.R379G CGTATCTCCCTTC . 57.0 4.0 31.0 0.0 . 18412 . . Atlas-SNP SSFA2 6744 hgsc.bcm.edu hg19 2 182781149 182781149 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e SSFA2,NS,carcinoma,0,1 SSFA2 NM_001130445 exon11 c.T2782C p.S928P AATCTTTCACAGG . 70.0 3.0 65.0 0.0 . 130 . . Atlas-SNP COL5A2 1290 hgsc.bcm.edu hg19 2 189922082 189922082 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . COL5A2 NM_000393 exon34 c.A2301G p.R767R AATTCCTCTTTCT . 90.0 5.0 86.0 0.0 . 230 . . Atlas-SNP FN1 2335 hgsc.bcm.edu hg19 2 216239959 216239959 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FN1 NM_212482 exon38 c.T6135C p.G2045G TGTGACACCAGGG . 116.0 5.0 110.0 0.0 . 521 . . Atlas-SNP CCDC108 255101 hgsc.bcm.edu hg19 2 219892384 219892384 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CCDC108 NM_194302 exon13 c.C2199T p.F733F GATGGCGAAGGCT . 255.0 84.0 185.0 0.0 . 208 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238244875 238244875 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e .,7 COL6A3 NM_004369 exon40 c.T8868C p.A2956A AGCAGCAGCGGGG . 47.0 5.0 39.0 1.0 . 608 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238244877 238244877 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . COL6A3 NM_004369 exon40 c.G8866C p.A2956P CAGCAGCGGGGGG . 46.0 4.0 40.0 0.0 . 608 . . Atlas-SNP PER2 8864 hgsc.bcm.edu hg19 2 239165617 239165617 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PER2 NM_022817 exon17 c.A2011G p.S671G TGTAGCTGCACTG . 113.0 6.0 78.0 0.0 . 85 . . Atlas-SNP TMEM43 79188 hgsc.bcm.edu hg19 3 14180787 14180787 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TMEM43 NM_024334 exon11 c.C990T p.L330L GATCCTCTACACC . 174.0 72.0 109.0 0.0 . 33 . . Atlas-SNP GOLGA4 2803 hgsc.bcm.edu hg19 3 37367411 37367411 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GOLGA4 NM_001172713 exon15 c.A4100G p.K1367R AGTTGAAGAAAGA . 76.0 4.0 54.0 0.0 . 173 . . Atlas-SNP DHX30 22907 hgsc.bcm.edu hg19 3 47882442 47882442 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DHX30 NM_138615 exon7 c.T442C p.S148P TTTGGCTCCCCTG . 161.0 8.0 112.0 0.0 . 101 . . Atlas-SNP CELSR3 1951 hgsc.bcm.edu hg19 3 48697030 48697030 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CELSR3 NM_001407 exon1 c.A3038G p.E1013G GTGGGCTCAATGG . 86.0 4.0 68.0 0.0 . 237 . . Atlas-SNP CCDC66 285331 hgsc.bcm.edu hg19 3 56650051 56650051 + Missense_Mutation SNP A A T rs74463118 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CCDC66 NM_001141947 exon13 c.A1813T p.T605S TCTACGACTTCTA . 99.0 5.0 96.0 0.0 . 145 . . Atlas-SNP PDHB 5162 hgsc.bcm.edu hg19 3 58415861 58415861 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PDHB NM_000925 exon7 c.A694G p.R232G CTTGCCTTTCTAT . 98.0 4.0 79.0 0.0 . 19 . . Atlas-SNP MITF 4286 hgsc.bcm.edu hg19 3 69813025 69813025 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MITF NM_006722 exon1 c.C33T p.F11F GGTTTTCCCACGA . 94.0 37.0 81.0 0.0 . 156 . . Atlas-SNP DRD3 1814 hgsc.bcm.edu hg19 3 113850192 113850192 + Missense_Mutation SNP T T G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DRD3 NM_033663 exon6 c.A779C p.Q260P GTGTCCTGGCAGA . 195.0 67.0 120.0 0.0 . 76 . . Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121186373 121186373 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . POLQ NM_199420 exon24 c.T6960C p.P2320P TGGGAAAGGCACA . 89.0 4.0 84.0 0.0 . 273 . . Atlas-SNP PARP14 54625 hgsc.bcm.edu hg19 3 122419294 122419294 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PARP14 NM_017554 exon6 c.T1893C p.T631T AAACACTGTAATC . 77.0 4.0 85.0 0.0 . 242 . . Atlas-SNP ITGB5 3693 hgsc.bcm.edu hg19 3 124515576 124515576 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ITGB5 NM_002213 exon10 c.A1352G p.D451G AGGCTGTCCCGGA . 106.0 6.0 119.0 0.0 . 66 . . Atlas-SNP SEC61A1 29927 hgsc.bcm.edu hg19 3 127775642 127775642 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SEC61A1 NM_013336 exon5 c.A311G p.D104G TTGGTGACACCCC . 105.0 6.0 82.0 0.0 . 39 . . Atlas-SNP KIAA1257 57501 hgsc.bcm.edu hg19 3 128694728 128694728 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KIAA1257 NM_020741 exon7 c.A915G p.T305T GGTTGGTGTTCTT . 90.0 4.0 64.0 0.0 . 33 . . Atlas-SNP TMCC1 23023 hgsc.bcm.edu hg19 3 129547013 129547013 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TMCC1 NM_001017395 exon3 c.T209C p.V70A TGCTGCACATCAT . 93.0 4.0 69.0 0.0 . 105 . . Atlas-SNP P2RY12 64805 hgsc.bcm.edu hg19 3 151055763 151055763 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . P2RY12 NM_022788 exon3 c.G871T p.A291S GGCATGCATTTAA . 66.0 46.0 111.0 0.0 . 36 . . Atlas-SNP ARHGEF26 26084 hgsc.bcm.edu hg19 3 153847474 153847474 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ARHGEF26 NM_001251962 exon4 c.A1235G p.K412R ACCATAAGCCATT . 93.0 4.0 198.0 0.0 . 158 . . Atlas-SNP KCNAB1 7881 hgsc.bcm.edu hg19 3 156183439 156183439 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KCNAB1 NM_172160 exon7 c.A535G p.T179A GCTGAAACAGAAA . 100.0 4.0 86.0 0.0 . 176 . . Atlas-SNP MFSD1 64747 hgsc.bcm.edu hg19 3 158527010 158527010 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MFSD1 NM_022736 exon6 c.T630C p.A210A ATATGCTGTGAGC . 74.0 4.0 58.0 0.0 . 88 . . Atlas-SNP ABCF3 55324 hgsc.bcm.edu hg19 3 183907218 183907218 + Missense_Mutation SNP A A G rs200262122 bycluster TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e ABCF3,colon,carcinoma,0,1 ABCF3 NM_018358 exon12 c.A1100G p.E367G GGCTGGAGAATTA . 164.0 18.0 115.0 1.0 . 72 . . Atlas-SNP ABCF3 55324 hgsc.bcm.edu hg19 3 183907370 183907370 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ABCF3 NM_018358 exon13 c.T1139C p.V380A TAGTCGTCTCCCA . 151.0 8.0 124.0 0.0 . 72 . . Atlas-SNP SST 6750 hgsc.bcm.edu hg19 3 187388043 187388043 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SST NM_001048 exon1 c.C37T p.L13L TGGACAGCGCAGC . 108.0 50.0 131.0 0.0 . 20 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195513683 195513683 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MUC4 NM_018406 exon2 c.A4768G p.T1590A AGGAAGTGTCGGT . 193.0 9.0 157.0 0.0 . 1505 . . Atlas-SNP UVSSA 57654 hgsc.bcm.edu hg19 4 1377635 1377635 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e KIAA1530,NS,carcinoma,0,1 . NM_020894 exon13 c.G1943A p.G648D GGAAAGGCAGGGG . 48.0 24.0 64.0 0.0 . . . . Atlas-SNP RAB28 9364 hgsc.bcm.edu hg19 4 13462450 13462450 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RAB28 NM_004249 exon4 c.A264G p.G88G GAGGACTCCCTGT . 104.0 5.0 63.0 0.0 . 56 . . Atlas-SNP RBM47 54502 hgsc.bcm.edu hg19 4 40440472 40440472 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RBM47 NM_001098634 exon4 c.A439G p.S147G CCACGCTGCAGCA . 95.0 4.0 96.0 0.0 . 146 . . Atlas-SNP NFXL1 152518 hgsc.bcm.edu hg19 4 47916121 47916121 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NFXL1 NM_152995 exon2 c.G100A p.G34R CTCCTCCGGCGCC . 37.0 15.0 89.0 0.0 . 79 . . Atlas-SNP SRP72 6731 hgsc.bcm.edu hg19 4 57340277 57340277 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SRP72 NM_006947 exon4 c.A412G p.N138D GTCCGAAACTCCC . 106.0 13.0 128.0 0.0 . 59 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79367953 79367953 + Missense_Mutation SNP A A C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FRAS1 NM_025074 exon43 c.A5929C p.S1977R GTGATAAGCAATT . 125.0 5.0 108.0 0.0 . 779 . . Atlas-SNP PKD2 5311 hgsc.bcm.edu hg19 4 88940628 88940628 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PKD2 NM_000297 exon2 c.T614C p.L205P CAAGACTCATGGA . 61.0 4.0 44.0 0.0 . 82 . . Atlas-SNP GPRIN3 285513 hgsc.bcm.edu hg19 4 90170576 90170576 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GPRIN3 NM_198281 exon2 c.A686G p.D229G TCAGAGTCACAGA . 78.0 4.0 65.0 0.0 . 90 . . Atlas-SNP PPP3CA 5530 hgsc.bcm.edu hg19 4 101982264 101982264 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PPP3CA NM_000944 exon10 c.C1136T p.S379L TCTTCTGACCCTA . 405.0 86.0 424.0 0.0 . 51 . . Atlas-SNP PPP3CA 5530 hgsc.bcm.edu hg19 4 102030182 102030182 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PPP3CA NM_000944 exon3 c.G313A p.G105R ATCCCCCGACTTC . 86.0 4.0 76.0 0.0 . 51 . . Atlas-SNP BANK1 55024 hgsc.bcm.edu hg19 4 102783739 102783739 + Missense_Mutation SNP G G T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BANK1 NM_017935 exon4 c.G681T p.E227D TGTAGAGGTTGAA . 187.0 73.0 144.0 0.0 . 95 . . Atlas-SNP SYNPO2 171024 hgsc.bcm.edu hg19 4 119947966 119947966 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SYNPO2 NM_001128934 exon3 c.A442G p.S148G CAAAGAAGTGGTC . 77.0 6.0 77.0 0.0 . 353 . . Atlas-SNP HSPA4L 22824 hgsc.bcm.edu hg19 4 128724944 128724944 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HSPA4L NM_014278 exon7 c.A824G p.K275R TAAAGAAGCTAAT . 99.0 4.0 111.0 0.0 . 82 . . Atlas-SNP INPP4B 8821 hgsc.bcm.edu hg19 4 143029265 143029265 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e INPP4B,NS,carcinoma,0,1 INPP4B NM_003866 exon24 c.G2355A p.M785I CTTTTCCATAAAT . 70.0 3.0 80.0 0.0 . 132 . . Atlas-SNP SH3D19 152503 hgsc.bcm.edu hg19 4 152095911 152095911 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SH3D19 NM_001128924 exon1 c.A605G p.D202G TCGATGTCCACCA . 125.0 5.0 96.0 0.0 . 54 . . Atlas-SNP FHDC1 85462 hgsc.bcm.edu hg19 4 153864458 153864458 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FHDC1 NM_033393 exon1 c.T249C p.T83T AACTACTCACATG . 108.0 5.0 96.0 0.0 . 102 . . Atlas-SNP C4orf46 201725 hgsc.bcm.edu hg19 4 159592902 159592902 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . C4orf46 NM_001008393 exon1 c.T52C p.S18P GAGAAGAGGGAGG . 125.0 9.0 174.0 0.0 . 11 . . Atlas-SNP CEP44 80817 hgsc.bcm.edu hg19 4 175225512 175225512 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CEP44 NM_001040157 exon6 c.T499C p.S167P ATGACCTCAGGAA . 166.0 12.0 146.0 0.0 . 35 . . Atlas-SNP SNX25 83891 hgsc.bcm.edu hg19 4 186185597 186185597 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SNX25 NM_031953 exon4 c.A245G p.E82G GACATGAAGAACA . 60.0 4.0 104.0 0.0 . 100 . . Atlas-SNP SLC9A3 6550 hgsc.bcm.edu hg19 5 477525 477525 + Missense_Mutation SNP G G T rs371187218 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLC9A3 NM_004174 exon11 c.C1682A p.S561Y CTGGGGGAGCGGA . 189.0 44.0 106.0 0.0 . 89 . . Atlas-SNP ROPN1L 83853 hgsc.bcm.edu hg19 5 10450066 10450066 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ROPN1L NM_031916 exon3 c.T258C p.C86C ACAGTGTCACCAC . 96.0 4.0 71.0 0.0 . 33 . . Atlas-SNP MYO10 4651 hgsc.bcm.edu hg19 5 16783454 16783454 + Missense_Mutation SNP G G T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MYO10 NM_012334 exon5 c.C592A p.L198I TTTCAAGAATAGC . 105.0 20.0 54.0 0.0 . 198 . . Atlas-SNP NIPBL 25836 hgsc.bcm.edu hg19 5 37063996 37063996 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NIPBL NM_015384 exon46 c.A7965G p.G2655G GCTTGGAGGAGGC . 99.0 4.0 64.0 0.0 . 513 . . Atlas-SNP ITGA2 3673 hgsc.bcm.edu hg19 5 52356813 52356813 + Silent SNP A A T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ITGA2 NM_002203 exon12 c.A1395T p.I465I CCAGATAGTGCTA . 194.0 73.0 189.0 0.0 . 211 . . Atlas-SNP SKIV2L2 23517 hgsc.bcm.edu hg19 5 54635841 54635841 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SKIV2L2 NM_015360 exon6 c.T519C p.Y173Y TAGGTATGCCATT . 93.0 5.0 73.0 0.0 . 104 . . Atlas-SNP IL31RA 133396 hgsc.bcm.edu hg19 5 55206415 55206415 + Missense_Mutation SNP G G T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . IL31RA NM_001242637 exon12 c.G1557T p.K519N ACGAAAGACCTCT . 267.0 105.0 233.0 0.0 . 84 . . Atlas-SNP SETD9 133383 hgsc.bcm.edu hg19 5 56205565 56205565 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_153706 exon1 c.C93T p.N31N CCACAACCCGAGG . 132.0 52.0 131.0 0.0 . . . . Atlas-SNP KIF2A 3796 hgsc.bcm.edu hg19 5 61659121 61659121 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KIF2A NM_001098511 exon13 c.A1236G p.K412K ACTGAAACTCATT . 92.0 6.0 45.0 0.0 . 69 . . Atlas-SNP TNPO1 3842 hgsc.bcm.edu hg19 5 72168546 72168546 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TNPO1 NM_002270 exon7 c.A677G p.E226G TTATTGAGGTAAG . 133.0 6.0 117.0 0.0 . 90 . . Atlas-SNP VCAN 1462 hgsc.bcm.edu hg19 5 82835029 82835029 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . VCAN NM_004385 exon8 c.G6207A p.T2069T AGGTACGAAAGCT . 91.0 36.0 66.0 0.0 . 498 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89954088 89954088 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e GPR98,NS,NS,0,1 GPR98 NM_032119 exon21 c.T4745C p.I1582T CTTGTATACCAGA . 189.0 73.0 165.0 0.0 . 605 . . Atlas-SNP ERAP2 64167 hgsc.bcm.edu hg19 5 96215717 96215717 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ERAP2 NM_001130140 exon2 c.T328C p.L110L ATCATCTTGCACA . 100.0 4.0 125.0 0.0 . 77 . . Atlas-SNP AP3S1 1176 hgsc.bcm.edu hg19 5 115249174 115249174 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . AP3S1 NM_001284 exon6 c.C569A p.P190H ACCTGCCCTCTTT . 231.0 40.0 225.0 0.0 . 25 . . Atlas-SNP SLC12A2 6558 hgsc.bcm.edu hg19 5 127484452 127484452 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLC12A2 NM_001046 exon12 c.T1888C p.C630R GCTCTATGTAAGG . 97.0 4.0 66.0 0.0 . 119 . . Atlas-SNP IRF1 3659 hgsc.bcm.edu hg19 5 131825125 131825125 + Missense_Mutation SNP T T G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . IRF1 NM_002198 exon2 c.A46C p.I16L AATTAATCTGCAT . 128.0 41.0 114.0 0.0 . 26 . . Atlas-SNP ZCCHC10 54819 hgsc.bcm.edu hg19 5 132334321 132334321 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZCCHC10 NM_017665 exon4 c.A467G p.D156G CTGCTATCTGTGC . 100.0 36.0 82.0 0.0 . 7 . . Atlas-SNP PCDHA3 56145 hgsc.bcm.edu hg19 5 140181074 140181074 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e PCDHA3_ENST00000522353,rectum,carcinoma,0,2 PCDHA3 NM_031497 exon1 c.C292T p.R98W TGCGGGCGGAGCG . 71.0 3.0 59.0 0.0 . 396 . . Atlas-SNP ARAP3 64411 hgsc.bcm.edu hg19 5 141038204 141038204 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ARAP3 NM_022481 exon24 c.A3353G p.D1118G ATGAGGTCTCCAG . 87.0 6.0 81.0 0.0 . 139 . . Atlas-SNP FBXO38 81545 hgsc.bcm.edu hg19 5 147807217 147807217 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FBXO38 NM_030793 exon15 c.G2360A p.R787K AAAGGAGAACTAG . 100.0 33.0 82.0 0.0 . 115 . . Atlas-SNP ZNF300 91975 hgsc.bcm.edu hg19 5 150275250 150275250 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZNF300 NM_001172831 exon7 c.A1599G p.G533G TTTTTCTCCTGTG . 73.0 4.0 62.0 0.0 . 69 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150908876 150908876 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FAT2 NM_001447 exon14 c.A9889G p.S3297G AGGAGCTCTTCCG . 122.0 44.0 106.0 0.0 . 465 . . Atlas-SNP UBLCP1 134510 hgsc.bcm.edu hg19 5 158705274 158705274 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . UBLCP1 NM_145049 exon9 c.A713G p.K238R GGGGAAAGTTTTC . 74.0 4.0 46.0 0.0 . 27 . . Atlas-SNP SPDL1 54908 hgsc.bcm.edu hg19 5 169031187 169031187 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_017785 exon12 c.A1794G p.P598P TACTCCAGAGACC . 97.0 4.0 69.0 0.0 . . . . Atlas-SNP RNF44 22838 hgsc.bcm.edu hg19 5 175958000 175958000 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RNF44 NM_014901 exon5 c.A488G p.Q163R AGCTGCTGCATGG . 91.0 4.0 57.0 0.0 . 33 . . Atlas-SNP FLT4 2324 hgsc.bcm.edu hg19 5 180036905 180036905 + Silent SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FLT4 NM_182925 exon28 c.G3807T p.V1269V AAGTACCACAGAG . 124.0 49.0 109.0 0.0 . 356 . . Atlas-SNP MAS1L 116511 hgsc.bcm.edu hg19 6 29454972 29454972 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MAS1L NM_052967 exon1 c.A708G p.S236S CACAAGTGAAAGG . 83.0 4.0 53.0 0.0 . 66 . . Atlas-SNP HLA-E 3133 hgsc.bcm.edu hg19 6 30458995 30458995 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HLA-E NM_005516 exon4 c.C692G p.P231R TCTACCCTGCGGA . 166.0 58.0 130.0 0.0 . 35 . . Atlas-SNP MDC1 9656 hgsc.bcm.edu hg19 6 30679231 30679231 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MDC1 NM_014641 exon7 c.C2179T p.P727S CTTGGGGTGGAGT . 228.0 83.0 184.0 0.0 . 218 . . Atlas-SNP PRRC2A 7916 hgsc.bcm.edu hg19 6 31594920 31594920 + Missense_Mutation SNP T T A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PRRC2A NM_004638 exon11 c.T1235A p.L412Q CTCCCCTACCCCC . 86.0 4.0 78.0 0.0 . 152 . . Atlas-SNP ABHD16A 7920 hgsc.bcm.edu hg19 6 31669898 31669898 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ABHD16A NM_021160 exon2 c.T142C p.Y48H GCTGATAGTACGT . 93.0 4.0 77.0 0.0 . 34 . . Atlas-SNP COL11A2 1302 hgsc.bcm.edu hg19 6 33137627 33137627 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e COL11A2,NS,carcinoma,0,1 COL11A2 NM_080680 exon50 c.A3671G p.Q1224R TCGCCCTGGATCC . 86.0 8.0 67.0 1.0 . 124 . . Atlas-SNP SYNGAP1 8831 hgsc.bcm.edu hg19 6 33405455 33405455 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SYNGAP1 NM_006772 exon8 c.G773A p.R258H ACAGCCGCCGGGT . 64.0 24.0 59.0 0.0 . 202 . . Atlas-SNP IP6K3 117283 hgsc.bcm.edu hg19 6 33696059 33696059 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . IP6K3 NM_001142883 exon4 c.T218C p.L73P TTCCAGAGGTGCA . 113.0 6.0 89.0 0.0 . 52 . . Atlas-SNP TEAD3 7005 hgsc.bcm.edu hg19 6 35443341 35443341 + Splice_Site SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TEAD3 NM_003214 exon12 c.1041+2T>C . CCACTCACCTCCA . 131.0 6.0 95.0 0.0 . 52 . . Atlas-SNP GPR111 222611 hgsc.bcm.edu hg19 6 47649351 47649351 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GPR111 NM_153839 exon7 c.A852G p.E284E TTTGGAAGCCAGT . 96.0 4.0 71.0 0.0 . 123 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56443682 56443682 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DST NM_015548 exon31 c.A5088G p.K1696K AGCCGTTTTCTTC . 118.0 5.0 85.0 0.0 . 1427 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75806978 75806978 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . COL12A1 NM_004370 exon59 c.A8568G p.P2856P CGGCCCTGGTGGG . 72.0 4.0 110.0 0.0 . 385 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75864133 75864133 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . COL12A1 NM_004370 exon17 c.T3564C p.S1188S CTTACCAGAAGAT . 95.0 4.0 87.0 0.0 . 385 . . Atlas-SNP SENP6 26054 hgsc.bcm.edu hg19 6 76405605 76405605 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SENP6 NM_015571 exon17 c.A2161G p.R721G AATCAGAGAGAGA . 97.0 4.0 154.0 0.0 . 189 . . Atlas-SNP CGA 1081 hgsc.bcm.edu hg19 6 87795550 87795550 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e CGA,colon,carcinoma,0,1 CGA NM_001252383 exon5 c.T368C p.V123A ACTGTGACCTAAA . 64.0 3.0 89.0 2.0 . 22 . . Atlas-SNP ANKRD6 22881 hgsc.bcm.edu hg19 6 90340295 90340295 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ANKRD6 NM_001242809 exon16 c.T1756C p.S586P ACAGGCTCCCGAC . 99.0 5.0 130.0 0.0 . 51 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90411385 90411385 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MDN1 NM_014611 exon55 c.A8319G p.E2773E CTGAACTTCTTTG . 46.0 4.0 59.0 0.0 . 478 . . Atlas-SNP BACH2 60468 hgsc.bcm.edu hg19 6 90661367 90661367 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BACH2 NM_001170794 exon5 c.A458G p.H153R TCCTCGTGTGGGC . 46.0 4.0 79.0 0.0 . 224 . . Atlas-SNP PNISR 25957 hgsc.bcm.edu hg19 6 99862518 99862518 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PNISR NM_015491 exon2 c.A18G p.G6G AGGCTGTCCTCCT . 76.0 4.0 106.0 0.0 . 74 . . Atlas-SNP AIM1 202 hgsc.bcm.edu hg19 6 106967048 106967048 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e AIM1,NS,carcinoma,0,1 AIM1 NM_001624 exon2 c.T741C p.P247P AACCCCTAAGAAT . 36.0 3.0 51.0 0.0 . 161 . . Atlas-SNP BET3L 100128327 hgsc.bcm.edu hg19 6 116866643 116866643 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BET3L NM_001139444 exon1 c.A35G p.H12R ATTTTATGGTATT . 98.0 4.0 188.0 0.0 . 18 . . Atlas-SNP HEY2 23493 hgsc.bcm.edu hg19 6 126080600 126080600 + Silent SNP C C T rs376521140 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e HEY2,NS,carcinoma,0,1 HEY2 NM_012259 exon5 c.C666T p.H222H TGCCCACGGCTCT . 48.0 32.0 80.0 0.0 . 44 . . Atlas-SNP PPIL4 85313 hgsc.bcm.edu hg19 6 149867088 149867088 + Silent SNP G G A rs200555722 alternate_allele TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PPIL4 NM_139126 exon1 c.C54T p.T18T TTCTTCGGTGTAC . 49.0 4.0 86.0 0.0 . 36 . G|0.997;C|0.003 Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151121959 151121959 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PLEKHG1 NM_001029884 exon7 c.T734C p.L245P CCTATCTCTTGAA . 93.0 4.0 105.0 0.0 . 97 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152623096 152623096 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SYNE1 NM_182961 exon92 c.A17449G p.T5817A TCACCGTCAGCAG . 88.0 4.0 105.0 0.0 . 3227 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152647436 152647436 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e SYNE1_ENST00000423061,NS,carcinoma,0,3 SYNE1 NM_182961 exon79 c.G15288A p.L5096L CCTCTGCAAGAGA . 45.0 2.0 63.0 0.0 . 3227 . . Atlas-SNP TMEM181 57583 hgsc.bcm.edu hg19 6 159005001 159005001 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TMEM181 NM_020823 exon4 c.A595G p.I199V ATTCAAATACTTT . 48.0 4.0 65.0 0.0 . 47 . . Atlas-SNP PMS2 5395 hgsc.bcm.edu hg19 7 6026652 6026652 + Missense_Mutation SNP C C G rs63750739 alternate_allele TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PMS2 NM_000535 exon11 c.G1744C p.E582Q TTTCTTCTTTTTT . 86.0 41.0 77.0 0.0 . 88 . . Atlas-SNP ITGB8 3696 hgsc.bcm.edu hg19 7 20438493 20438493 + Nonsense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ITGB8 NM_002214 exon9 c.C1157A p.S386X TCATTTCAGAAGT . 159.0 60.0 127.0 0.0 . 159 . . Atlas-SNP HOXA11 3207 hgsc.bcm.edu hg19 7 27224736 27224736 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HOXA11 NM_005523 exon1 c.T28C p.S10P TAGAGGAGCAGGG . 95.0 4.0 45.0 0.0 . 29 . . Atlas-SNP EVX1 2128 hgsc.bcm.edu hg19 7 27285511 27285511 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . EVX1 NM_001989 exon3 c.T691C p.F231L GTGTGGTTCCAGA . 100.0 4.0 113.0 0.0 . 23 . . Atlas-SNP NPC1L1 29881 hgsc.bcm.edu hg19 7 44555505 44555505 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NPC1L1 NM_013389 exon19 c.G3774A p.K1258K CTGGGCCTTGGCG . 93.0 38.0 68.0 0.0 . 141 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48312769 48312769 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ABCA13 NM_152701 exon17 c.T3506C p.M1169T TTGACATGAATGT . 97.0 4.0 70.0 0.0 . 1192 . . Atlas-SNP MLXIPL 51085 hgsc.bcm.edu hg19 7 73010987 73010987 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MLXIPL NM_032954 exon11 c.T1804C p.S602P GGGGTGAGAGCCG . 129.0 6.0 85.0 0.0 . 54 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83590840 83590840 + Missense_Mutation SNP G G T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e SEMA3A,pharynx,carcinoma,0,1 SEMA3A NM_006080 exon17 c.C2163A p.F721L TTCACAGAACTCA . 549.0 109.0 238.0 0.0 . 121 . . Atlas-SNP LMTK2 22853 hgsc.bcm.edu hg19 7 97821985 97821985 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e LMTK2_ENST00000297293,NS,carcinoma,0,2 LMTK2 NM_014916 exon11 c.G2208A p.L736L CTCATTGTCCAGC . 40.0 3.0 30.0 0.0 . 228 . . Atlas-SNP PILRB 29990 hgsc.bcm.edu hg19 7 99957138 99957138 + Silent SNP C C G rs369458364 alternate_allele TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PILRB NM_178238 exon3 c.C633G p.L211L CCTCCTCCTGTGG . 126.0 16.0 84.0 0.0 . 26 . . Atlas-SNP PILRB 29990 hgsc.bcm.edu hg19 7 99957139 99957139 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PILRB NM_178238 exon3 c.C634T p.L212L CTCCTCCTGTGGT . 120.0 9.0 84.0 0.0 . 26 . . Atlas-SNP IFRD1 3475 hgsc.bcm.edu hg19 7 112095823 112095823 + Nonsense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e IFRD1,NS,carcinoma,0,1 IFRD1 NM_001007245 exon3 c.C100T p.Q34X GGTGGCCAGCATC . 39.0 2.0 37.0 0.0 . 46 . . Atlas-SNP GRM8 2918 hgsc.bcm.edu hg19 7 126079220 126079220 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GRM8 NM_000845 exon10 c.T2680C p.S894P TAGAGGAAGCTGT . 63.0 4.0 50.0 0.0 . 377 . . Atlas-SNP PAX4 5078 hgsc.bcm.edu hg19 7 127252032 127252032 + Silent SNP T T C rs370406503 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PAX4 NM_006193 exon7 c.A714G p.V238V CCTTGGTACAGTC . 75.0 4.0 59.0 0.0 . 66 . . Atlas-SNP WEE2 494551 hgsc.bcm.edu hg19 7 141420771 141420771 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . WEE2 NM_001105558 exon5 c.G795A p.V265V CGCAGTGCTTGGG . 96.0 4.0 75.0 0.0 . 59 . . Atlas-SNP SSBP1 6742 hgsc.bcm.edu hg19 7 141441987 141441987 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SSBP1 NM_001256513 exon3 c.A43G p.R15G TTTGTAAGACATG . 61.0 4.0 41.0 0.0 . 17 . . Atlas-SNP GIMAP8 155038 hgsc.bcm.edu hg19 7 150171348 150171348 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GIMAP8 NM_175571 exon4 c.A931G p.N311D TTAAAGAACATTG . 126.0 31.0 63.0 0.0 . 136 . . Atlas-SNP PAXIP1 22976 hgsc.bcm.edu hg19 7 154759592 154759592 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e PAXIP1_ENST00000397192,colon,carcinoma,0,2 PAXIP1 NM_007349 exon8 c.T1827C p.C609C AAACACACATCCC . 75.0 4.0 71.0 1.0 . 150 . . Atlas-SNP INSIG1 3638 hgsc.bcm.edu hg19 7 155090257 155090257 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . INSIG1 NM_198337 exon2 c.A262G p.S88G CAGAGGAGCCTCG . 77.0 4.0 59.0 0.0 . 20 . . Atlas-SNP MTMR9 66036 hgsc.bcm.edu hg19 8 11174246 11174246 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MTMR9 NM_015458 exon8 c.A1178G p.E393G AGTGGGAGGCTCC . 139.0 6.0 191.0 0.0 . 58 . . Atlas-SNP VPS37A 137492 hgsc.bcm.edu hg19 8 17132309 17132309 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . VPS37A NM_152415 exon5 c.C484A p.P162T CCATATCCTCCAC . 117.0 65.0 174.0 0.0 . 22 . . Atlas-SNP ATP6V1B2 526 hgsc.bcm.edu hg19 8 20074766 20074766 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ATP6V1B2 NM_001693 exon12 c.A1197G p.S399S ACTATCACGGTTA . 95.0 4.0 80.0 0.0 . 34 . . Atlas-SNP POLR3D 661 hgsc.bcm.edu hg19 8 22106822 22106822 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . POLR3D NM_001722 exon7 c.A921G p.R307R AGACCGAGTACGC . 84.0 5.0 90.0 0.0 . 26 . . Atlas-SNP EXTL3 2137 hgsc.bcm.edu hg19 8 28575571 28575571 + Silent SNP G G T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . EXTL3 NM_001440 exon3 c.G1995T p.V665V CACGGTGGTGATG . 165.0 94.0 222.0 1.0 . 83 . . Atlas-SNP FGFR1 2260 hgsc.bcm.edu hg19 8 38285912 38285912 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FGFR1 NM_001174067 exon5 c.T499C p.S167P AAGAGGAGTCATC . 84.0 4.0 123.0 0.0 . 284 . . Atlas-SNP IDO2 169355 hgsc.bcm.edu hg19 8 39840206 39840206 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . IDO2 NM_194294 exon5 c.A390G p.E130E TGTCGAAGTCTCC . 70.0 5.0 85.0 0.0 . 78 . . Atlas-SNP AP3M2 10947 hgsc.bcm.edu hg19 8 42022975 42022975 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . AP3M2 NM_001134296 exon7 c.C700T p.H234Y AGCTTCCATCCTT . 329.0 140.0 245.0 0.0 . 41 . . Atlas-SNP FNTA 2339 hgsc.bcm.edu hg19 8 42939883 42939883 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FNTA NM_002027 exon8 c.T876C p.Y292Y CAAATATCCTAAT . 104.0 6.0 89.0 0.0 . 34 . . Atlas-SNP PCMTD1 115294 hgsc.bcm.edu hg19 8 52746162 52746162 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PCMTD1 NM_052937 exon4 c.A498G p.G166G TCCAGCTCCACAA . 74.0 4.0 84.0 0.0 . 73 . . Atlas-SNP RP1 6101 hgsc.bcm.edu hg19 8 55537397 55537397 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RP1 NM_006269 exon4 c.A955G p.I319V GATGATATTGAGA . 94.0 4.0 79.0 0.0 . 429 . . Atlas-SNP CHD7 55636 hgsc.bcm.edu hg19 8 61707642 61707642 + Missense_Mutation SNP C C T rs200277422 bycluster;alternate_allele TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CHD7 NM_017780 exon4 c.C2194T p.P732S ACACCCCCACCAT . 79.0 4.0 57.0 0.0 . 534 . C|0.998;G|0.002 Atlas-SNP SULF1 23213 hgsc.bcm.edu hg19 8 70541861 70541861 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SULF1 NM_001128205 exon19 c.T2231C p.L744P CTGGCCTCACTTG . 120.0 6.0 109.0 0.0 . 153 . . Atlas-SNP SLCO5A1 81796 hgsc.bcm.edu hg19 8 70744610 70744610 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLCO5A1 NM_030958 exon2 c.A299G p.D100G CTGAGGTCCACCC . 138.0 18.0 117.0 0.0 . 142 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77616371 77616371 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e ZFHX4,NS,carcinoma,0,1 ZFHX4 NM_024721 exon2 c.G48A p.Q16Q TGGGCAGAGCACA . 144.0 63.0 126.0 0.0 . 878 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77768488 77768488 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZFHX4 NM_024721 exon10 c.G9331A p.G3111R CTCCCCGGAATGA . 69.0 5.0 66.0 0.0 . 878 . . Atlas-SNP TMEM67 91147 hgsc.bcm.edu hg19 8 94822029 94822029 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TMEM67 NM_153704 exon26 c.A2678G p.D893G AAATGGATTACTT . 92.0 4.0 90.0 0.0 . 187 . . Atlas-SNP NCALD 83988 hgsc.bcm.edu hg19 8 102731720 102731720 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NCALD NM_001040627 exon4 c.A138G p.E46E AAACTCTTCCATT . 121.0 5.0 120.0 0.0 . 16 . . Atlas-SNP RIMS2 9699 hgsc.bcm.edu hg19 8 104898200 104898200 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RIMS2 NM_001100117 exon4 c.A1373G p.H458R AACAGCACCACTT . 109.0 5.0 79.0 0.0 . 1357 . . Atlas-SNP RIMS2 9699 hgsc.bcm.edu hg19 8 105257145 105257145 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e RIMS2_ENST00000507740,NS,carcinoma,0,4 RIMS2 NM_001100117 exon20 c.A3336G p.K1112K TGCAGAAGCAGGA . 66.0 3.0 69.0 1.0 . 1357 . . Atlas-SNP SAMD12 401474 hgsc.bcm.edu hg19 8 119452108 119452108 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SAMD12 NM_207506 exon3 c.G285C p.Q95H GTAGATCTGATAC . 176.0 70.0 172.0 0.0 . 24 . . Atlas-SNP ZHX2 22882 hgsc.bcm.edu hg19 8 123964092 123964092 + Missense_Mutation SNP A A T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZHX2 NM_014943 exon3 c.A342T p.E114D TGCAGAATGTAAC . 75.0 21.0 43.0 0.0 . 106 . . Atlas-SNP TONSL 4796 hgsc.bcm.edu hg19 8 145659589 145659589 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TONSL NM_013432 exon21 c.C3159T p.A1053A GTCCAGGGCCAGG . 100.0 9.0 123.0 0.0 . 128 . . Atlas-SNP GLDC 2731 hgsc.bcm.edu hg19 9 6554742 6554742 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GLDC NM_000170 exon19 c.T2242C p.S748P GGTGCGAGACATC . 74.0 5.0 52.0 0.0 . 118 . . Atlas-SNP CCDC171 203238 hgsc.bcm.edu hg19 9 15695299 15695299 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_173550 exon11 c.T1282C p.L428L TCGATCTTGGACA . 95.0 4.0 96.0 0.0 . . . . Atlas-SNP PLIN2 123 hgsc.bcm.edu hg19 9 19116605 19116605 + Missense_Mutation SNP G G C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PLIN2 NM_001122 exon8 c.C955G p.Q319E GCTGCTGAGTCAG . 217.0 97.0 200.0 0.0 . 41 . . Atlas-SNP MLLT3 4300 hgsc.bcm.edu hg19 9 20414041 20414041 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MLLT3 NM_004529 exon5 c.A803G p.N268S AGTAAGTTACTAT . 451.0 179.0 439.0 1.0 . 125 . . Atlas-SNP IFNA6 3443 hgsc.bcm.edu hg19 9 21350645 21350645 + Missense_Mutation SNP T T G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . IFNA6 NM_021002 exon1 c.A242C p.H81P ACCTCATGGAGGA . 239.0 110.0 193.0 0.0 . 27 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79324155 79324155 + Missense_Mutation SNP G G T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PRUNE2 NM_015225 exon8 c.C3035A p.P1012H GACTGAGGAGGAA . 176.0 9.0 151.0 0.0 . 331 . . Atlas-SNP TXN 7295 hgsc.bcm.edu hg19 9 113018699 113018699 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TXN NM_001244938 exon1 c.A17G p.E6G TTGCTCTCGATCT . 65.0 6.0 52.0 0.0 . 6 . . Atlas-SNP HSDL2 84263 hgsc.bcm.edu hg19 9 115232768 115232768 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HSDL2 NM_032303 exon11 c.A1201G p.M401V GGTAACATGGCCC . 42.0 4.0 54.0 0.0 . 24 . . Atlas-SNP COL27A1 85301 hgsc.bcm.edu hg19 9 117015214 117015214 + Splice_Site SNP T T A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . COL27A1 NM_032888 exon27 c.3141+2T>A . CCCAGGTAAGCAA . 166.0 58.0 128.0 0.0 . 200 . . Atlas-SNP OR5C1 392391 hgsc.bcm.edu hg19 9 125551531 125551531 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . OR5C1 NM_001001923 exon1 c.T320C p.V107A TGTTTGTCTTTGC . 101.0 5.0 86.0 0.0 . 45 . . Atlas-SNP CRB2 286204 hgsc.bcm.edu hg19 9 126139301 126139301 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CRB2 NM_173689 exon13 c.A3818G p.D1273G AGATGGACAGTGT . 137.0 6.0 142.0 0.0 . 86 . . Atlas-SNP FPGS 2356 hgsc.bcm.edu hg19 9 130573285 130573285 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FPGS NM_004957 exon14 c.A1349G p.N450S CAGGCAACGCAGG . 62.0 4.0 46.0 0.0 . 30 . . Atlas-SNP SETX 23064 hgsc.bcm.edu hg19 9 135202230 135202230 + Silent SNP A A G rs151237267 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SETX NM_015046 exon10 c.T4755C p.P1585P AGGAGGAGGCAAG . 127.0 6.0 127.0 0.0 . 234 . A|0.995;C|0.005 Atlas-SNP TSC1 7248 hgsc.bcm.edu hg19 9 135798881 135798881 + Splice_Site SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TSC1 NM_001162427 exon6 c.211-2A>G . TCCATCTGCAGGA . 127.0 7.0 119.0 0.0 . 167 . . Atlas-SNP C9orf173 441476 hgsc.bcm.edu hg19 9 140147365 140147365 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . C9orf173 NM_001004353 exon5 c.G744A p.S248S CCGCTCGCCGGCC . 70.0 36.0 63.0 0.0 . 19 . . Atlas-SNP C10orf113 387638 hgsc.bcm.edu hg19 10 21435343 21435343 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . C10orf113 NM_001177483 exon1 c.G95T p.S32I CAAACACTCTCTC . 101.0 5.0 64.0 0.0 . 32 . . Atlas-SNP C10orf113 387638 hgsc.bcm.edu hg19 10 21435344 21435344 + Missense_Mutation SNP T T A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . C10orf113 NM_001177483 exon1 c.A94T p.S32C AAACACTCTCTCT . 103.0 6.0 65.0 0.0 . 32 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26443748 26443748 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MYO3A NM_017433 exon25 c.T2789C p.F930S CATATTTTAGAGT . 90.0 4.0 68.0 0.0 . 371 . . Atlas-SNP DDX50 79009 hgsc.bcm.edu hg19 10 70694063 70694063 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DDX50 NM_024045 exon9 c.C1348T p.R450C GCTGCCCGTGGTT . 66.0 24.0 52.0 0.0 . 65 . . Atlas-SNP KAT6B 23522 hgsc.bcm.edu hg19 10 76741556 76741556 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_012330 exon11 c.T2243C p.L748P CAAAGCTTTACCT . 76.0 4.0 52.0 0.0 . . . . Atlas-SNP DUPD1 338599 hgsc.bcm.edu hg19 10 76818256 76818256 + Missense_Mutation SNP A A T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DUPD1 NM_001003892 exon1 c.T17A p.V6E GTCTTCACTTCTC . 79.0 23.0 53.0 0.0 . 30 . . Atlas-SNP DUSP13 51207 hgsc.bcm.edu hg19 10 76868819 76868819 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DUSP13 NM_001007272 exon1 c.T97C p.S33P AAGAAGACTTCCC . 84.0 4.0 64.0 0.0 . 82 . . Atlas-SNP FAS 355 hgsc.bcm.edu hg19 10 90762898 90762898 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FAS NM_152872 exon2 c.A143G p.N48S CTCAGAACTTGGA . 72.0 4.0 109.0 0.0 . 47 . . Atlas-SNP TBC1D12 23232 hgsc.bcm.edu hg19 10 96260080 96260080 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TBC1D12 NM_015188 exon6 c.T1515C p.T505T TATCACTCCTGGT . 70.0 4.0 120.0 0.0 . 51 . . Atlas-SNP HPSE2 60495 hgsc.bcm.edu hg19 10 100904083 100904083 + Silent SNP C C T rs200038077 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HPSE2 NM_001166246 exon3 c.G522A p.L174L GAGCTCCAGCATA . 62.0 4.0 69.0 0.0 . 203 . C|0.999;T|0.001 Atlas-SNP CHUK 1147 hgsc.bcm.edu hg19 10 101978562 101978562 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e CHUK,caecum,carcinoma,0,5 CHUK NM_001278 exon8 c.A710G p.K237R GGATCCTTCTTCT . 79.0 4.0 118.0 0.0 . 71 . . Atlas-SNP BTRC 8945 hgsc.bcm.edu hg19 10 103190119 103190119 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BTRC NM_001256856 exon2 c.T66C p.S22S CAGGTCTCTGTGG . 82.0 4.0 146.0 0.0 . 64 . . Atlas-SNP PPRC1 23082 hgsc.bcm.edu hg19 10 103908392 103908392 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PPRC1 NM_015062 exon11 c.T4558C p.S1520P TACAGCTCTTATC . 97.0 4.0 130.0 0.0 . 151 . . Atlas-SNP TAF5 6877 hgsc.bcm.edu hg19 10 105139430 105139430 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TAF5 NM_006951 exon4 c.A1179G p.G393G AGAGGGAGAAAAT . 89.0 4.0 134.0 0.0 . 47 . . Atlas-SNP COL17A1 1308 hgsc.bcm.edu hg19 10 105830329 105830329 + Splice_Site SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . COL17A1 NM_000494 exon10 c.464-2A>G . TGTCCCTGTGAAA . 43.0 4.0 58.0 0.0 . 149 . . Atlas-SNP SMC3 9126 hgsc.bcm.edu hg19 10 112356255 112356255 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SMC3 NM_005445 exon19 c.A2063G p.E688G AAGAAGAACTAGG . 61.0 4.0 61.0 0.0 . 103 . . Atlas-SNP VWA2 340706 hgsc.bcm.edu hg19 10 116044664 116044664 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . VWA2 NM_001272046 exon10 c.T932C p.V311A CATGTGTTCCAGA . 65.0 4.0 75.0 0.0 . 64 . . Atlas-SNP SEC23IP 11196 hgsc.bcm.edu hg19 10 121677482 121677482 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SEC23IP NM_007190 exon9 c.A1679G p.N560S AGATAAACCATCT . 93.0 5.0 101.0 0.0 . 100 . . Atlas-SNP PIDD 55367 hgsc.bcm.edu hg19 11 802841 802841 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PIDD NM_145887 exon4 c.T760C p.S254P GCACAGAGGCCAG . 147.0 6.0 127.0 0.0 . 76 . . Atlas-SNP IFITM10 402778 hgsc.bcm.edu hg19 11 1756545 1756545 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_001170820 exon3 c.T652C p.F218L AGATGAAGACGAG . 82.0 5.0 63.0 0.0 . . . . Atlas-SNP OR51G1 79324 hgsc.bcm.edu hg19 11 4944635 4944635 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . OR51G1 NM_001005237 exon1 c.T935C p.I312T GACTTTATAAACT . 117.0 16.0 113.0 0.0 . 74 . . Atlas-SNP AMPD3 272 hgsc.bcm.edu hg19 11 10500172 10500172 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . AMPD3 NM_000480 exon3 c.T348C p.S116S CATGTCTCCCACA . 114.0 5.0 89.0 0.0 . 68 . . Atlas-SNP EIF4G2 1982 hgsc.bcm.edu hg19 11 10824623 10824623 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . EIF4G2 NM_001172705 exon11 c.A950G p.D317G CCATTGTCAAGAA . 125.0 5.0 99.0 0.0 . 89 . . Atlas-SNP SERGEF 26297 hgsc.bcm.edu hg19 11 18026056 18026056 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SERGEF NM_012139 exon4 c.T379C p.S127P AGTTGGATCCACA . 62.0 4.0 48.0 0.0 . 38 . . Atlas-SNP FBXO3 26273 hgsc.bcm.edu hg19 11 33770421 33770421 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FBXO3 NM_012175 exon9 c.A950G p.D317G AGTGCATCTTTTG . 88.0 4.0 72.0 0.0 . 37 . . Atlas-SNP AMBRA1 55626 hgsc.bcm.edu hg19 11 46431903 46431903 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . AMBRA1 NM_001267782 exon18 c.T3141C p.G1047G CTCAACACCAGAG . 96.0 4.0 79.0 0.0 . 201 . . Atlas-SNP SPI1 6688 hgsc.bcm.edu hg19 11 47380554 47380554 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SPI1 NM_001080547 exon4 c.T337C p.S113P GGTAGGAGACCTG . 306.0 13.0 225.0 0.0 . 21 . . Atlas-SNP OR4S2 219431 hgsc.bcm.edu hg19 11 55418935 55418935 + Missense_Mutation SNP G G T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . OR4S2 NM_001004059 exon1 c.G556T p.A186S AAACTTGCCTGCA . 301.0 114.0 235.0 0.0 . 89 . . Atlas-SNP OR5M10 390167 hgsc.bcm.edu hg19 11 56344846 56344846 + Missense_Mutation SNP T T A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e .,1 OR5M10 NM_001004741 exon1 c.A352T p.M118L ATGCCATTGAAGC . 115.0 13.0 80.0 0.0 . 56 . . Atlas-SNP OR5M10 390167 hgsc.bcm.edu hg19 11 56344847 56344847 + Silent SNP T T G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . OR5M10 NM_001004741 exon1 c.A351C p.S117S TGCCATTGAAGCA . 114.0 12.0 80.0 0.0 . 56 . . Atlas-SNP OR5M10 390167 hgsc.bcm.edu hg19 11 56344851 56344851 + Missense_Mutation SNP G G C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . OR5M10 NM_001004741 exon1 c.C347G p.A116G ATTGAAGCAAGGA . 120.0 5.0 81.0 0.0 . 56 . . Atlas-SNP TNKS1BP1 85456 hgsc.bcm.edu hg19 11 57076580 57076580 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TNKS1BP1 NM_033396 exon6 c.A3605G p.D1202G TTCATGTCTCTCA . 125.0 5.0 116.0 0.0 . 148 . . Atlas-SNP MPEG1 219972 hgsc.bcm.edu hg19 11 58979671 58979671 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MPEG1 NM_001039396 exon1 c.C668T p.A223V AAGGAGGCCCTGA . 49.0 21.0 44.0 0.0 . 72 . . Atlas-SNP FADS3 3995 hgsc.bcm.edu hg19 11 61641336 61641336 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FADS3 NM_021727 exon12 c.T1288C p.S430P TCAGGGACCTGGG . 242.0 10.0 132.0 0.0 . 29 . . Atlas-SNP SLC22A11 55867 hgsc.bcm.edu hg19 11 64326710 64326710 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLC22A11 NM_018484 exon2 c.G497A p.R166Q CCTACCGGTGAGT . 98.0 39.0 67.0 0.0 . 54 . . Atlas-SNP LTBP3 4054 hgsc.bcm.edu hg19 11 65315205 65315205 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e LTBP3,colon,carcinoma,0,1 LTBP3 NM_001130144 exon13 c.G1934C p.R645P TAGCCGCGGTTGC . 40.0 5.0 34.0 0.0 . 55 . . Atlas-SNP AP5B1 91056 hgsc.bcm.edu hg19 11 65547419 65547419 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . AP5B1 NM_138368 exon2 c.T545C p.V182A GGCTGGACAGGGC . 100.0 6.0 115.0 0.0 . 40 . . Atlas-SNP ANKRD13D 338692 hgsc.bcm.edu hg19 11 67067337 67067337 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ANKRD13D NM_207354 exon9 c.A920G p.Q307R TGGCGCAGCAGCA . 100.0 4.0 108.0 0.0 . 71 . . Atlas-SNP ARHGEF17 9828 hgsc.bcm.edu hg19 11 73076917 73076917 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ARHGEF17 NM_014786 exon20 c.C5920A p.R1974S CACGTCCGCTTCT . 90.0 28.0 72.0 0.0 . 117 . . Atlas-SNP FAM168A 23201 hgsc.bcm.edu hg19 11 73179515 73179515 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FAM168A NM_015159 exon2 c.A5G p.N2S ACAGGGTTCATTG . 74.0 4.0 69.0 0.0 . 18 . . Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76858854 76858854 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MYO7A NM_001127179 exon4 c.T143C p.I48T ACTGGATCTCTCC . 147.0 7.0 95.0 0.0 . 164 . . Atlas-SNP CADM1 23705 hgsc.bcm.edu hg19 11 115049371 115049371 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CADM1 NM_014333 exon9 c.A1203G p.R401R TTTATGTCTGGCA . 54.0 4.0 45.0 0.0 . 74 . . Atlas-SNP CEP164 22897 hgsc.bcm.edu hg19 11 117222640 117222640 + Missense_Mutation SNP A A C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CEP164 NM_001271933 exon4 c.A329C p.K110T CCATTAAGAAGAA . 87.0 6.0 57.0 0.0 . 121 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118368716 118368716 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MLL NM_001197104 exon21 c.A5730G p.S1910S GTGGTCAGCGGAA . 95.0 4.0 93.0 0.0 . 548 . . Atlas-SNP CXCR5 643 hgsc.bcm.edu hg19 11 118764607 118764607 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CXCR5 NM_001716 exon2 c.G354A p.G118G CCTGGGGACCTTC . 177.0 42.0 173.0 0.0 . 34 . . Atlas-SNP BCL9L 283149 hgsc.bcm.edu hg19 11 118769314 118769314 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BCL9L NM_182557 exon8 c.A4310G p.K1437R CGCTGCTTCATCA . 113.0 5.0 159.0 0.0 . 254 . . Atlas-SNP ABCG4 64137 hgsc.bcm.edu hg19 11 119030961 119030961 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ABCG4 NM_022169 exon13 c.A1462G p.S488G TACTGCAGCATTG . 141.0 6.0 108.0 0.0 . 77 . . Atlas-SNP SORL1 6653 hgsc.bcm.edu hg19 11 121420770 121420770 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SORL1 NM_003105 exon15 c.T2153C p.V718A GCCCTGTGGGTTC . 92.0 5.0 54.0 0.0 . 218 . . Atlas-SNP ARHGAP32 9743 hgsc.bcm.edu hg19 11 128932247 128932247 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ARHGAP32 NM_001142685 exon9 c.A849G p.G283G AATGTCTCCCACC . 47.0 4.0 43.0 0.0 . 307 . . Atlas-SNP SLC6A13 6540 hgsc.bcm.edu hg19 12 333670 333670 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLC6A13 NM_016615 exon10 c.T1070C p.L357P AAAGCCAGGCCAG . 176.0 63.0 152.0 0.0 . 62 . . Atlas-SNP CD163L1 283316 hgsc.bcm.edu hg19 12 7510070 7510070 + Missense_Mutation SNP T T A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CD163L1 NM_174941 exon19 c.A4292T p.N1431I CCATGGTTGGGGG . 74.0 24.0 52.0 0.0 . 238 . . Atlas-SNP PLCZ1 89869 hgsc.bcm.edu hg19 12 18841123 18841123 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e PLCZ1,lower_third,carcinoma,0,1 PLCZ1 NM_033123 exon13 c.T1491C p.T497T TGAATGAGTAAGA . 44.0 2.0 29.0 0.0 . 107 . . Atlas-SNP PLEKHA5 54477 hgsc.bcm.edu hg19 12 19436349 19436349 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PLEKHA5 NM_001256470 exon12 c.T1449C p.P483P AACCCCTTCCACT . 92.0 5.0 85.0 0.0 . 198 . . Atlas-SNP ARNTL2 56938 hgsc.bcm.edu hg19 12 27573461 27573461 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ARNTL2 NM_020183 exon17 c.T1907C p.L636P GGACCCTCTAGCC . 67.0 5.0 74.0 0.0 . 54 . . Atlas-SNP KIAA1551 55196 hgsc.bcm.edu hg19 12 32136525 32136525 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_018169 exon4 c.C2636T p.S879L AGGAGTCAAGGAA . 170.0 47.0 137.0 0.0 . . . . Atlas-SNP SLC38A1 81539 hgsc.bcm.edu hg19 12 46598344 46598344 + Silent SNP A A G rs148843987 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e SLC38A1,hand,malignant_melanoma,0,1 SLC38A1 NM_030674 exon10 c.T676C p.L226L AGCTCAAGGAAAA . 58.0 3.0 53.0 0.0 . 58 . . Atlas-SNP DDN 23109 hgsc.bcm.edu hg19 12 49391026 49391026 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DDN NM_015086 exon2 c.A1633G p.T545A GGAAAGTGCGCTC . 49.0 4.0 68.0 0.0 . 54 . . Atlas-SNP NCKAP5L 57701 hgsc.bcm.edu hg19 12 50189186 50189186 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NCKAP5L NM_001037806 exon8 c.T2457C p.P819P CTTGGAAGGGAGC . 65.0 5.0 43.0 0.0 . 142 . . Atlas-SNP CSRNP2 81566 hgsc.bcm.edu hg19 12 51457625 51457625 + Silent SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CSRNP2 NM_030809 exon5 c.G1536T p.T512T ATTGTCCGTGCGG . 152.0 71.0 154.0 0.0 . 47 . . Atlas-SNP CSRNP2 81566 hgsc.bcm.edu hg19 12 51457641 51457641 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CSRNP2 NM_030809 exon5 c.G1520T p.S507I GGGAGGCTTGAGG . 169.0 76.0 166.0 0.0 . 47 . . Atlas-SNP CELA1 1990 hgsc.bcm.edu hg19 12 51723604 51723604 + Missense_Mutation SNP C C G rs201129231 bycluster TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CELA1 NM_001971 exon7 c.G623C p.G208A AGGGGGCCCCCAG . 35.0 4.0 46.0 0.0 . 39 . C|0.999;G|0.001 Atlas-SNP BAZ2A 11176 hgsc.bcm.edu hg19 12 56995380 56995380 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BAZ2A NM_013449 exon20 c.T4027C p.S1343P CCTCAGAAACTGC . 88.0 5.0 67.0 0.0 . 263 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57569808 57569808 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . LRP1 NM_002332 exon24 c.T3910C p.F1304L CTGGACTTCCACC . 117.0 7.0 106.0 0.0 . 428 . . Atlas-SNP KIF5A 3798 hgsc.bcm.edu hg19 12 57966045 57966045 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KIF5A NM_004984 exon14 c.A1564G p.K522E TCTCAGAAGGTGG . 93.0 4.0 93.0 0.0 . 143 . . Atlas-SNP TBK1 29110 hgsc.bcm.edu hg19 12 64889483 64889483 + Missense_Mutation SNP G G C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TBK1 NM_013254 exon15 c.G1648C p.E550Q AGTGTAGAAAAAC . 109.0 50.0 58.0 0.0 . 149 . . Atlas-SNP CAND1 55832 hgsc.bcm.edu hg19 12 67701207 67701207 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CAND1 NM_018448 exon11 c.C2960T p.T987M TGGTTACGGCTGT . 82.0 34.0 57.0 0.0 . 100 . . Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78513703 78513703 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NAV3 NM_014903 exon15 c.A3727G p.I1243V CCAGATATTGCCT . 200.0 75.0 155.0 0.0 . 506 . . Atlas-SNP CEP290 80184 hgsc.bcm.edu hg19 12 88444170 88444170 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CEP290 NM_025114 exon53 c.A7170G p.T2390T GAGCTGTGTCTCT . 65.0 4.0 41.0 0.0 . 195 . . Atlas-SNP CEP290 80184 hgsc.bcm.edu hg19 12 88486591 88486591 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CEP290 NM_025114 exon29 c.G3328T p.D1110Y GTGCATCCAAATT . 177.0 64.0 176.0 0.0 . 195 . . Atlas-SNP WSCD2 9671 hgsc.bcm.edu hg19 12 108642083 108642083 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . WSCD2 NM_014653 exon9 c.A1661G p.N554S GGCGGAACCTAAC . 95.0 4.0 70.0 0.0 . 125 . . Atlas-SNP DAO 1610 hgsc.bcm.edu hg19 12 109288106 109288106 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DAO NM_001917 exon7 c.A575G p.D192G AACGAGACCCCCT . 92.0 4.0 98.0 0.0 . 58 . . Atlas-SNP ACACB 32 hgsc.bcm.edu hg19 12 109613960 109613960 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ACACB NM_001093 exon8 c.A1329G p.A443A CCAGGCAGCAGAA . 94.0 4.0 74.0 0.0 . 330 . . Atlas-SNP ANAPC7 51434 hgsc.bcm.edu hg19 12 110812082 110812082 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ANAPC7 NM_016238 exon11 c.A1667G p.E556G GGACTCTCCTCCT . 83.0 5.0 57.0 0.0 . 68 . . Atlas-SNP ARPC3 10094 hgsc.bcm.edu hg19 12 110874444 110874444 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ARPC3 NM_005719 exon5 c.A297G p.G99G AGTGATTCCCAGC . 94.0 4.0 102.0 0.0 . 7 . . Atlas-SNP ACAD10 80724 hgsc.bcm.edu hg19 12 112186252 112186252 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ACAD10 NM_001136538 exon18 c.A2710G p.T904A CCTCTGACGGTGT . 97.0 4.0 63.0 0.0 . 93 . . Atlas-SNP RPH3A 22895 hgsc.bcm.edu hg19 12 113319635 113319635 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RPH3A NM_001143854 exon15 c.T1310C p.L437P ACCTCCTGCCGGG . 111.0 5.0 99.0 0.0 . 98 . . Atlas-SNP OAS3 4940 hgsc.bcm.edu hg19 12 113384738 113384738 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . OAS3 NM_006187 exon4 c.A827G p.E276G GCTTCGAGGACCC . 150.0 6.0 141.0 0.0 . 63 . . Atlas-SNP TPCN1 53373 hgsc.bcm.edu hg19 12 113730811 113730811 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TPCN1 NM_001143819 exon27 c.A2402G p.E801G ACCGGGAGGCACG . 87.0 5.0 71.0 0.0 . 109 . . Atlas-SNP CIT 11113 hgsc.bcm.edu hg19 12 120172998 120172998 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CIT NM_001206999 exon25 c.G3123A p.T1041T TCGTTCCGTGATC . 450.0 155.0 371.0 0.0 . 535 . . Atlas-SNP OASL 8638 hgsc.bcm.edu hg19 12 121469367 121469367 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . OASL NM_198213 exon3 c.A535G p.K179E AGGCCTTGATCAG . 64.0 4.0 59.0 0.0 . 49 . . Atlas-SNP SETD1B 23067 hgsc.bcm.edu hg19 12 122246139 122246139 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SETD1B NM_015048 exon4 c.A570G p.E190E CTATGAACTGTTG . 142.0 6.0 114.0 0.0 . 105 . . Atlas-SNP CLIP1 6249 hgsc.bcm.edu hg19 12 122864937 122864937 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CLIP1 NM_002956 exon2 c.A63G p.T21T CAGAGCTGTGCTT . 74.0 4.0 51.0 0.0 . 126 . . Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132527997 132527997 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . EP400 NM_015409 exon33 c.T6356C p.F2119S CTGACTTCATGGA . 82.0 4.0 82.0 0.0 . 370 . . Atlas-SNP P2RX2 22953 hgsc.bcm.edu hg19 12 133196677 133196677 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . P2RX2 NM_170683 exon5 c.T549C p.S183S GGCCTCTGTCAGG . 96.0 4.0 94.0 0.0 . 49 . . Atlas-SNP ZMYM2 7750 hgsc.bcm.edu hg19 13 20567643 20567643 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZMYM2 NM_001190964 exon4 c.C431T p.P144L GACCTCCTGAGAC . 113.0 43.0 91.0 0.0 . 191 . . Atlas-SNP LATS2 26524 hgsc.bcm.edu hg19 13 21555755 21555755 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . LATS2 NM_014572 exon6 c.A2515G p.S839G GGTCGCTGGGCTC . 89.0 4.0 98.0 0.0 . 176 . . Atlas-SNP SPATA13 221178 hgsc.bcm.edu hg19 13 24797158 24797158 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SPATA13 NM_001166271 exon2 c.T91C p.C31R GCCCCCTGTGCAG . 94.0 4.0 80.0 0.0 . 92 . . Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25266639 25266639 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ATP12A NM_001185085 exon9 c.A1159G p.T387A GTGGAGACCCTCG . 87.0 4.0 66.0 0.0 . 172 . . Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25266681 25266681 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ATP12A NM_001185085 exon9 c.A1201G p.T401A ACTGGGACACTGA . 125.0 7.0 101.0 0.0 . 172 . . Atlas-SNP BRCA2 675 hgsc.bcm.edu hg19 13 32937516 32937516 + Missense_Mutation SNP A A G rs80359064 bycluster TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BRCA2 NM_000059 exon18 c.A8177G p.Y2726C GGTGGTATGCTGT . 168.0 66.0 139.0 0.0 . 812 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 36046643 36046643 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NBEA NM_015678 exon41 c.T6555C p.D2185D TGAGGATGATTCT . 94.0 4.0 88.0 0.0 . 340 . . Atlas-SNP WBP4 11193 hgsc.bcm.edu hg19 13 41642739 41642739 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . WBP4 NM_007187 exon5 c.C305T p.P102L CTATCCCACCTAC . 64.0 4.0 50.0 0.0 . 40 . . Atlas-SNP NAA16 79612 hgsc.bcm.edu hg19 13 41941630 41941630 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NAA16 NM_024561 exon14 c.A1595G p.K532R TGAGAAAGATGAC . 91.0 4.0 74.0 0.0 . 74 . . Atlas-SNP LACC1 144811 hgsc.bcm.edu hg19 13 44455558 44455558 + Missense_Mutation SNP C C A rs150202700 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_001128303 exon2 c.C437A p.S146Y AACAGTCCATTGA . 76.0 25.0 76.0 0.0 . . . C|1.000;A|0.000 Atlas-SNP TDRD3 81550 hgsc.bcm.edu hg19 13 61084796 61084796 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e TDRD3_ENST00000535286,NS,carcinoma,0,2 TDRD3 NM_001146070 exon10 c.G1048A p.E350K AGATCTGAAGATG . 43.0 3.0 35.0 0.0 . 123 . . Atlas-SNP SCEL 8796 hgsc.bcm.edu hg19 13 78143580 78143580 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SCEL NM_003843 exon8 c.A473G p.K158R TAAAGAAGAAGAG . 65.0 4.0 56.0 0.0 . 85 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103394092 103394092 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_001146197 exon4 c.G8955A p.E2985E TTCTCTCTCCCAC . 86.0 4.0 74.0 0.0 . . . . Atlas-SNP SLC10A2 6555 hgsc.bcm.edu hg19 13 103701761 103701761 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLC10A2 NM_000452 exon5 c.A797G p.N266S TGCGTGTTCTGCA . 187.0 70.0 143.0 0.0 . 67 . . Atlas-SNP DHRS4L1 728635 hgsc.bcm.edu hg19 14 24517998 24517998 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_001082488 exon8 c.T653C p.I218T GACTTATCAAGAC . 875.0 333.0 674.0 0.0 . . . . Atlas-SNP LRRC16B 90668 hgsc.bcm.edu hg19 14 24523470 24523470 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . LRRC16B NM_138360 exon4 c.T206C p.V69A TCAATGTCCTGGA . 94.0 4.0 61.0 0.0 . 120 . . Atlas-SNP NYNRIN 57523 hgsc.bcm.edu hg19 14 24879219 24879219 + Missense_Mutation SNP A A C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NYNRIN NM_025081 exon4 c.A2219C p.Q740P AGTTTCAGATGGA . 138.0 8.0 98.0 0.0 . 120 . . Atlas-SNP AKAP6 9472 hgsc.bcm.edu hg19 14 33291695 33291695 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . AKAP6 NM_004274 exon13 c.T4676C p.L1559P AACAGCTCTCCCT . 93.0 4.0 90.0 0.0 . 308 . . Atlas-SNP BAZ1A 11177 hgsc.bcm.edu hg19 14 35227928 35227928 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BAZ1A NM_013448 exon25 c.A4368G p.K1456K AACAAGTTTCAAA . 65.0 4.0 58.0 0.0 . 128 . . Atlas-SNP LRFN5 145581 hgsc.bcm.edu hg19 14 42357029 42357029 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . LRFN5 NM_152447 exon3 c.A1201G p.T401A ACTTCTACCAAGT . 92.0 4.0 62.0 0.0 . 269 . . Atlas-SNP TMEM260 0 hgsc.bcm.edu hg19 14 57083976 57083976 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_017799 exon9 c.A1017G p.R339R TTGGAGAGCAAAT . 108.0 5.0 109.0 0.0 . . . . Atlas-SNP PCNXL4 64430 hgsc.bcm.edu hg19 14 60585412 60585412 + Splice_Site SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_022495 exon6 c.1240+2T>C . TTTAGGTAAGTAA . 100.0 4.0 80.0 0.0 . . . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68220472 68220472 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZFYVE26 NM_015346 exon39 c.A7140G p.G2380G TTTCCCTCCCAGC . 77.0 4.0 61.0 0.0 . 223 . . Atlas-SNP C14orf1 11161 hgsc.bcm.edu hg19 14 76117958 76117958 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . C14orf1 NM_007176 exon5 c.G363A p.M121I GACCAGCATACCC . 104.0 37.0 76.0 0.0 . 13 . . Atlas-SNP NRDE2 55051 hgsc.bcm.edu hg19 14 90755002 90755002 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_017970 exon11 c.T2717C p.L906P TTAGCCAGGCTAA . 72.0 4.0 45.0 0.0 . . . . Atlas-SNP CCDC88C 440193 hgsc.bcm.edu hg19 14 91806281 91806281 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CCDC88C NM_001080414 exon7 c.A571G p.S191G CCATGCTCCTCGA . 181.0 12.0 147.0 0.0 . 192 . . Atlas-SNP YY1 7528 hgsc.bcm.edu hg19 14 100742844 100742844 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . YY1 NM_003403 exon4 c.C921G p.F307L GATGTTCAGGGAT . 105.0 27.0 85.0 0.0 . 20 . . Atlas-SNP GABRB3 2562 hgsc.bcm.edu hg19 15 26828551 26828551 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GABRB3 NM_021912 exon5 c.A472G p.T158A CTGCTGTCGTGGT . 78.0 4.0 93.0 0.0 . 338 . . Atlas-SNP C15orf52 388115 hgsc.bcm.edu hg19 15 40628995 40628995 + Silent SNP T T C rs143912259 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . C15orf52 NM_207380 exon8 c.A894G p.K298K CTGTAGTTTCTGG . 74.0 39.0 64.0 0.0 . 47 . T|1.000;C|0.000 Atlas-SNP SPTBN5 51332 hgsc.bcm.edu hg19 15 42163597 42163597 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SPTBN5 NM_016642 exon29 c.T5318C p.V1773A TGACGGACCATGG . 153.0 7.0 212.0 0.0 . 171 . . Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49033896 49033896 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CEP152 NM_001194998 exon26 c.A3995G p.E1332G TTTTTCTCAGCCC . 89.0 4.0 70.0 0.0 . 145 . . Atlas-SNP RORA 6095 hgsc.bcm.edu hg19 15 60806947 60806947 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RORA NM_134260 exon5 c.A391G p.R131G TTCTCCTGAAAAA . 99.0 4.0 107.0 0.0 . 114 . . Atlas-SNP CLN6 54982 hgsc.bcm.edu hg19 15 68504129 68504129 + Missense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CLN6 NM_017882 exon4 c.G370A p.A124T TGCTGGCACCCAT . 95.0 4.0 95.0 0.0 . 16 . . Atlas-SNP ITGA11 22801 hgsc.bcm.edu hg19 15 68620599 68620599 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ITGA11 NM_001004439 exon16 c.T1903C p.S635P GGCGGGACCTGGA . 130.0 8.0 92.0 0.0 . 110 . . Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72170493 72170493 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MYO9A NM_006901 exon31 c.A5819G p.E1940G CGCTGCTCAAGCC . 184.0 9.0 120.0 0.0 . 203 . . Atlas-SNP SCAMP5 192683 hgsc.bcm.edu hg19 15 75310253 75310253 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SCAMP5 NM_001178111 exon6 c.C336T p.F112F TACCTTCATGGCT . 135.0 50.0 121.0 0.0 . 34 . . Atlas-SNP IQGAP1 8826 hgsc.bcm.edu hg19 15 91043300 91043300 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . IQGAP1 NM_003870 exon38 c.T4934C p.L1645P TCAACCTCCTGAT . 96.0 5.0 94.0 0.0 . 140 . . Atlas-SNP LRRC28 123355 hgsc.bcm.edu hg19 15 99892588 99892588 + Nonsense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e LRRC28,NS,malignant_melanoma,0,1 LRRC28 NM_144598 exon7 c.C607T p.R203X CGATCTCGAGAAC . 25.0 2.0 33.0 0.0 . 38 . . Atlas-SNP SNRPA1 6627 hgsc.bcm.edu hg19 15 101827183 101827183 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SNRPA1 NM_003090 exon5 c.A389G p.H130R CTGTAATGCTTCT . 87.0 4.0 64.0 0.0 . 11 . . Atlas-SNP TELO2 9894 hgsc.bcm.edu hg19 16 1551668 1551668 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TELO2 NM_016111 exon11 c.T1366C p.S456P AGCACGTCCCTCG . 138.0 6.0 121.0 0.0 . 44 . . Atlas-SNP PKD1 5310 hgsc.bcm.edu hg19 16 2153323 2153323 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PKD1 NM_000296 exon23 c.A8735G p.D2912G CTGCTGTCCAGGG . 86.0 4.0 110.0 0.0 . 184 . . Atlas-SNP TIGD7 91151 hgsc.bcm.edu hg19 16 3348989 3348989 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TIGD7 NM_033208 exon2 c.T1626C p.P542P AGTTGAAGGCCCA . 80.0 4.0 92.0 0.0 . 41 . . Atlas-SNP NLRC3 197358 hgsc.bcm.edu hg19 16 3602250 3602250 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NLRC3 NM_178844 exon10 c.A2298G p.G766G CTGGGCTCCCATG . 117.0 5.0 92.0 0.0 . 103 . . Atlas-SNP ATF7IP2 80063 hgsc.bcm.edu hg19 16 10527419 10527419 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ATF7IP2 NM_024997 exon4 c.G873A p.E291E AAACGAGGAAAAT . 190.0 47.0 168.0 0.0 . 40 . . Atlas-SNP CIITA 4261 hgsc.bcm.edu hg19 16 10989540 10989540 + Missense_Mutation SNP A A G rs143732812 bycluster TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CIITA NM_000246 exon3 c.A214G p.T72A ACAGACACCATCA . 136.0 6.0 102.0 0.0 . 92 . A|1.000;G|0.000 Atlas-SNP ACSM2A 123876 hgsc.bcm.edu hg19 16 20497902 20497902 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ACSM2A NM_001010845 exon15 c.T1636C p.F546L ATAGAGTTTGTCT . 163.0 8.0 149.0 0.0 . 120 . . Atlas-SNP DNAH3 55567 hgsc.bcm.edu hg19 16 21139101 21139101 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DNAH3 NM_017539 exon8 c.A1115G p.E372G AGTATTTCTGCTG . 89.0 4.0 58.0 0.0 . 1142 . . Atlas-SNP HS3ST2 9956 hgsc.bcm.edu hg19 16 22926369 22926369 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HS3ST2 NM_006043 exon2 c.A590G p.D197G CCCGAGACACCAA . 81.0 4.0 89.0 0.0 . 59 . . Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24801289 24801289 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TNRC6A NM_014494 exon6 c.A1326G p.Q442Q TGGTCAACCTCAA . 83.0 4.0 72.0 0.0 . 171 . . Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24801444 24801444 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TNRC6A NM_014494 exon6 c.A1481G p.Q494R AGATGCAGGCTCC . 86.0 4.0 90.0 0.0 . 171 . . Atlas-SNP NFATC2IP 84901 hgsc.bcm.edu hg19 16 28967623 28967623 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NFATC2IP NM_032815 exon5 c.T811C p.C271R ATCCGTTGCCGGG . 90.0 4.0 68.0 0.0 . 24 . . Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30732698 30732698 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SRCAP NM_006662 exon21 c.T3442C p.S1148P ACCACTTCTACCA . 100.0 5.0 69.0 0.0 . 298 . . Atlas-SNP ZNF629 23361 hgsc.bcm.edu hg19 16 30793663 30793663 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZNF629 NM_001080417 exon3 c.C1986T p.Y662Y GCAGATGTAGGTC . 56.0 18.0 58.0 0.0 . 44 . . Atlas-SNP C16orf78 123970 hgsc.bcm.edu hg19 16 49412388 49412388 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e C16orf78,NS,malignant_melanoma,0,1 C16orf78 NM_144602 exon3 c.G278A p.G93E CCTTAGGAAAGAG . 43.0 14.0 42.0 0.0 . 57 . . Atlas-SNP CCDC135 84229 hgsc.bcm.edu hg19 16 57758667 57758667 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CCDC135 NM_032269 exon12 c.T1678C p.S560P TTCCTCTCCTACC . 123.0 7.0 84.0 0.0 . 97 . . Atlas-SNP ZNF319 57567 hgsc.bcm.edu hg19 16 58031121 58031121 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZNF319 NM_020807 exon2 c.T1049C p.M350T AAGCCCATGGGGC . 75.0 5.0 88.0 0.0 . 42 . . Atlas-SNP AARS 16 hgsc.bcm.edu hg19 16 70303590 70303590 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . AARS NM_001605 exon7 c.T893C p.L298P TCAGCCAGCACCC . 107.0 5.0 89.0 0.0 . 62 . . Atlas-SNP COG4 25839 hgsc.bcm.edu hg19 16 70553593 70553593 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . COG4 NM_015386 exon2 c.A213G p.Q71Q GGTGTTTTGCTGT . 115.0 5.0 88.0 0.0 . 64 . . Atlas-SNP HYDIN 54768 hgsc.bcm.edu hg19 16 70884467 70884467 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HYDIN NM_001270974 exon74 c.A12535G p.T4179A TTAATGTCACAGG . 212.0 39.0 149.0 0.0 . 788 . . Atlas-SNP ADAMTS18 170692 hgsc.bcm.edu hg19 16 77326981 77326981 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ADAMTS18 NM_199355 exon20 c.T3181C p.W1061R CGCTCCACGAAGA . 63.0 4.0 44.0 0.0 . 270 . . Atlas-SNP C16orf46 123775 hgsc.bcm.edu hg19 16 81095083 81095083 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . C16orf46 NM_001100873 exon3 c.C871T p.L291L CGGTCAGCAGGGA . 208.0 67.0 184.0 0.0 . 57 . . Atlas-SNP TAF1C 9013 hgsc.bcm.edu hg19 16 84212770 84212770 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TAF1C NM_005679 exon14 c.A2387G p.Q796R AACTCCTGGGAGG . 68.0 4.0 71.0 0.0 . 60 . . Atlas-SNP ADAD2 161931 hgsc.bcm.edu hg19 16 84229269 84229269 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ADAD2 NM_139174 exon7 c.A1264G p.S422G TACATCAGCAACA . 70.0 4.0 118.0 0.0 . 46 . . Atlas-SNP ATP2C2 9914 hgsc.bcm.edu hg19 16 84438813 84438813 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ATP2C2 NM_014861 exon3 c.A290G p.D97G TTGCTGACAACAG . 144.0 6.0 128.0 0.0 . 75 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88497617 88497617 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZNF469 NM_001127464 exon2 c.T3655C p.S1219P TTGCGTTCTCCTC . 88.0 4.0 73.0 0.0 . 121 . . Atlas-SNP ACSF3 197322 hgsc.bcm.edu hg19 16 89180759 89180759 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ACSF3 NM_174917 exon6 c.A990G p.S330S GGTCTCAGGCTCA . 139.0 9.0 121.0 0.0 . 40 . . Atlas-SNP PELP1 27043 hgsc.bcm.edu hg19 17 4585844 4585844 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PELP1 NM_014389 exon5 c.A595G p.M199V CCTTCATTCCTTC . 61.0 4.0 75.0 0.0 . 102 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7721766 7721766 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DNAH2 NM_020877 exon68 c.T10524C p.A3508A CTTTGCTGTTAAA . 57.0 33.0 80.0 0.0 . 498 . . Atlas-SNP CNTROB 116840 hgsc.bcm.edu hg19 17 7842848 7842848 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CNTROB NM_001037144 exon8 c.T945C p.A315A GCAAGCTCTGACT . 85.0 6.0 135.0 0.0 . 61 . . Atlas-SNP ULK2 9706 hgsc.bcm.edu hg19 17 19700945 19700945 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ULK2 NM_001142610 exon18 c.A1573G p.R525G GCAGTCTAGCACC . 33.0 4.0 42.0 0.0 . 142 . . Atlas-SNP KSR1 8844 hgsc.bcm.edu hg19 17 25932752 25932752 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KSR1 NM_014238 exon15 c.T1562C p.V521A AAGAGGTGATGAA . 147.0 8.0 110.0 0.0 . 151 . . Atlas-SNP TP53I13 90313 hgsc.bcm.edu hg19 17 27899619 27899619 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TP53I13 NM_138349 exon6 c.A973G p.T325A CTGCTCACCCTGG . 116.0 5.0 90.0 0.0 . 17 . . Atlas-SNP CPD 1362 hgsc.bcm.edu hg19 17 28770949 28770949 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CPD NM_001304 exon11 c.T2503C p.L835L CGTCTCTTGGTTC . 90.0 5.0 61.0 0.0 . 89 . . Atlas-SNP NF1 4763 hgsc.bcm.edu hg19 17 29576138 29576138 + Splice_Site SNP G G C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e NF1_ENST00000358273,NS,carcinoma,0,3 NF1 NM_000267 exon30 c.4110+1G>C . TACCAGGTATGCT . 94.0 28.0 87.0 0.0 . 1586 . . Atlas-SNP ZNF830 91603 hgsc.bcm.edu hg19 17 33289487 33289487 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZNF830 NM_052857 exon1 c.T902C p.L301S GACGGTTGGACCG . 93.0 4.0 73.0 0.0 . 26 . . Atlas-SNP SLFN14 342618 hgsc.bcm.edu hg19 17 33880034 33880034 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLFN14 NM_001129820 exon3 c.A1619G p.E540G TCCATTTCCTCCT . 109.0 9.0 112.0 0.0 . 43 . . Atlas-SNP GAS2L2 246176 hgsc.bcm.edu hg19 17 34073039 34073039 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GAS2L2 NM_139285 exon6 c.T1477C p.S493P TTGGAGAACGGAC . 77.0 4.0 53.0 0.0 . 94 . . Atlas-SNP TOP2A 7153 hgsc.bcm.edu hg19 17 38552571 38552571 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TOP2A NM_001067 exon28 c.A3684G p.K1228K CTCTGCTTTCATT . 46.0 4.0 69.0 0.0 . 124 . . Atlas-SNP KRTAP1-4 728255 hgsc.bcm.edu hg19 17 39186236 39186236 + Missense_Mutation SNP G G T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KRTAP1-4 NM_001257305 exon1 c.C95A p.T32N GAGCTGGTCTGGC . 101.0 46.0 69.0 0.0 . 4 . . Atlas-SNP KRTAP9-2 83899 hgsc.bcm.edu hg19 17 39383332 39383332 + Missense_Mutation SNP G G C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KRTAP9-2 NM_031961 exon1 c.G426C p.Q142H CTGCCAGCCCTGC . 239.0 17.0 181.0 0.0 . 24 . . Atlas-SNP KRT17 3872 hgsc.bcm.edu hg19 17 39778675 39778675 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KRT17 NM_000422 exon3 c.G604T p.A202S GGTCGGCTCTGGC . 608.0 224.0 438.0 0.0 . 57 . . Atlas-SNP MPP3 4356 hgsc.bcm.edu hg19 17 41907094 41907094 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MPP3 NM_001932 exon7 c.T369C p.P123P ATTGTCAGGCAGA . 96.0 4.0 84.0 0.0 . 42 . . Atlas-SNP SPOP 8405 hgsc.bcm.edu hg19 17 47684733 47684733 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SPOP NM_001007228 exon8 c.A716G p.N239S ACTCGATTCTATG . 67.0 4.0 81.0 0.0 . 91 . . Atlas-SNP CACNA1G 8913 hgsc.bcm.edu hg19 17 48703642 48703642 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CACNA1G NM_018896 exon38 c.A6664G p.S2222G GAGCTGAGCTGGA . 123.0 5.0 96.0 0.0 . 659 . . Atlas-SNP CEP95 90799 hgsc.bcm.edu hg19 17 62528114 62528114 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CEP95 NM_138363 exon14 c.T1646C p.L549P GTGGCCTCCCAAA . 80.0 4.0 57.0 0.0 . 103 . . Atlas-SNP HELZ 9931 hgsc.bcm.edu hg19 17 65105654 65105654 + Missense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HELZ NM_014877 exon29 c.C4067T p.P1356L CGATTAGGGATTG . 501.0 131.0 305.0 0.0 . 160 . . Atlas-SNP SDK2 54549 hgsc.bcm.edu hg19 17 71386431 71386431 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SDK2 NM_001144952 exon29 c.A4187G p.K1396R CCTCTCTTCTCGG . 84.0 4.0 59.0 0.0 . 219 . . Atlas-SNP SLC9A3R1 9368 hgsc.bcm.edu hg19 17 72759578 72759578 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLC9A3R1 NM_004252 exon3 c.A676G p.T226A GACGAGACCAAGC . 242.0 12.0 152.0 0.0 . 12 . . Atlas-SNP ITGB4 3691 hgsc.bcm.edu hg19 17 73729645 73729645 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ITGB4 NM_001005731 exon13 c.A1529G p.K510R AGGACAAGCCGTG . 96.0 4.0 52.0 0.0 . 165 . . Atlas-SNP CYGB 114757 hgsc.bcm.edu hg19 17 74527573 74527573 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CYGB NM_134268 exon2 c.T344C p.L115P TGCTTGAGGGCGT . 119.0 5.0 57.0 0.0 . 9 . . Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76464900 76464900 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DNAH17 NM_173628 exon55 c.A8577G p.T2859T GGAGTCTGTCATC . 111.0 5.0 62.0 0.0 . 347 . . Atlas-SNP CHMP6 79643 hgsc.bcm.edu hg19 17 78972946 78972946 + Missense_Mutation SNP C C G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CHMP6 NM_024591 exon8 c.C599G p.A200G TGGCAGCTTCGTA . 128.0 37.0 95.0 0.0 . 16 . . Atlas-SNP VAPA 9218 hgsc.bcm.edu hg19 18 9931911 9931911 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . VAPA NM_003574 exon2 c.A184G p.R62G TGTGTGAGGCCCA . 97.0 4.0 73.0 0.0 . 28 . . Atlas-SNP DSG4 147409 hgsc.bcm.edu hg19 18 28971041 28971041 + Nonsense_Mutation SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DSG4 NM_001134453 exon7 c.C685T p.Q229X ATTAAGCAACACA . 83.0 4.0 84.0 0.0 . 343 . . Atlas-SNP ASXL3 80816 hgsc.bcm.edu hg19 18 31326119 31326119 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ASXL3 NM_030632 exon12 c.T6307C p.Y2103H GTTTCCTATGACC . 80.0 4.0 48.0 0.0 . 405 . . Atlas-SNP ALPK2 115701 hgsc.bcm.edu hg19 18 56247584 56247584 + Nonsense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ALPK2 NM_052947 exon4 c.G424T p.E142X CCTTCTCATCAAT . 306.0 125.0 270.0 1.0 . 487 . . Atlas-SNP PIGN 23556 hgsc.bcm.edu hg19 18 59713126 59713126 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PIGN NM_176787 exon31 c.T2759C p.L920P AGTCTGAGTTTCT . 94.0 5.0 77.0 0.0 . 62 . . Atlas-SNP SERPINB10 5273 hgsc.bcm.edu hg19 18 61587033 61587033 + Silent SNP A A G rs149788289 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SERPINB10 NM_005024 exon4 c.A384G p.E128E TTTAGAAGACATG . 75.0 4.0 66.0 0.0 . 53 . A|1.000;G|0.000 Atlas-SNP MUM1 84939 hgsc.bcm.edu hg19 19 1362334 1362334 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MUM1 NM_032853 exon6 c.A1200G p.R400R ACCAAGAGTCCTT . 95.0 5.0 80.0 0.0 . 54 . . Atlas-SNP REXO1 57455 hgsc.bcm.edu hg19 19 1816497 1816497 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . REXO1 NM_020695 exon14 c.T3389C p.L1130P ATGCTCAGCAGAA . 77.0 4.0 71.0 0.0 . 55 . . Atlas-SNP FZR1 51343 hgsc.bcm.edu hg19 19 3530851 3530851 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FZR1 NM_001136198 exon7 c.A716G p.E239G GGTCTGAGCGGGT . 87.0 4.0 67.0 0.0 . 42 . . Atlas-SNP ANKRD24 170961 hgsc.bcm.edu hg19 19 4200121 4200121 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ANKRD24 NM_133475 exon5 c.A296G p.E99G GTCTGGAGGTGAT . 114.0 5.0 100.0 0.0 . 180 . . Atlas-SNP DCAF15 90379 hgsc.bcm.edu hg19 19 14071164 14071164 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DCAF15 NM_138353 exon11 c.T1592C p.V531A AGACAGTCAGTGT . 85.0 4.0 115.0 0.0 . 30 . . Atlas-SNP FKBP8 23770 hgsc.bcm.edu hg19 19 18649200 18649200 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FKBP8 NM_012181 exon5 c.A598G p.T200A TCAGGGTCACCTC . 113.0 5.0 118.0 0.0 . 69 . . Atlas-SNP ZNF681 148213 hgsc.bcm.edu hg19 19 23938330 23938330 + Silent SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZNF681 NM_138286 exon2 c.G27T p.V9V TATGGCCACATCC . 36.0 10.0 36.0 0.0 . 76 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36229022 36229022 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MLL4 NM_014727 exon36 c.T7802C p.V2601A AGATGGTCATCGA . 100.0 6.0 68.0 0.0 . 229 . . Atlas-SNP NPHS1 4868 hgsc.bcm.edu hg19 19 36342181 36342181 + Missense_Mutation SNP A A T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NPHS1 NM_004646 exon3 c.T380A p.V127E AGGATCACTCTGG . 110.0 26.0 82.0 0.0 . 165 . . Atlas-SNP C19orf33 64073 hgsc.bcm.edu hg19 19 38795554 38795554 + Missense_Mutation SNP A A G rs79297344 bycluster TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . C19orf33 NM_033520 exon4 c.A271G p.K91E AAGAAGAAGGAGA . 310.0 14.0 226.0 0.0 . 9 . . Atlas-SNP KCNK6 9424 hgsc.bcm.edu hg19 19 38817935 38817935 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KCNK6 NM_004823 exon3 c.T834C p.S278S TGCCAGTTTCAAT . 114.0 6.0 94.0 0.0 . 37 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38939069 38939069 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RYR1 NM_001042723 exon10 c.T875C p.L292P TAGCGCTCACCGA . 82.0 4.0 68.0 0.0 . 708 . . Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 41029483 41029483 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SPTBN4 NM_020971 exon17 c.T3794C p.L1265P AGGGCCTGCTGAG . 86.0 5.0 62.0 0.0 . 213 . . Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 41066144 41066144 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SPTBN4 NM_020971 exon27 c.A5750G p.E1917G GCCGGGAGCAGGA . 156.0 7.0 145.0 0.0 . 213 . . Atlas-SNP HNRNPUL1 11100 hgsc.bcm.edu hg19 19 41800283 41800283 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HNRNPUL1 NM_007040 exon9 c.C1307A p.T436K AGACCACATGGGC . 235.0 82.0 190.0 0.0 . 73 . . Atlas-SNP CIC 23152 hgsc.bcm.edu hg19 19 42798458 42798458 + Splice_Site SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CIC NM_015125 exon18 c.4327+2T>C . TACAGGTGCCGTG . 69.0 4.0 71.0 0.0 . 249 . . Atlas-SNP MEGF8 1954 hgsc.bcm.edu hg19 19 42855634 42855634 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MEGF8 NM_001271938 exon17 c.A2909G p.Q970R GGTGCCAGTCCAC . 81.0 4.0 76.0 0.0 . 358 . . Atlas-SNP CADM4 199731 hgsc.bcm.edu hg19 19 44127546 44127546 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CADM4 NM_145296 exon9 c.A1103G p.E368G CTTGCTTCTCCCT . 126.0 9.0 91.0 0.0 . 26 . . Atlas-SNP CEACAM20 125931 hgsc.bcm.edu hg19 19 45026890 45026890 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CEACAM20 NM_001102600 exon4 c.A524G p.E175G ACCACCTCCCCAC . 121.0 6.0 90.0 0.0 . 31 . . Atlas-SNP SLC1A5 6510 hgsc.bcm.edu hg19 19 47280496 47280496 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLC1A5 NM_005628 exon6 c.T1225C p.L409L AGTCCAAGGACTG . 82.0 5.0 49.0 0.0 . 31 . . Atlas-SNP PLA2G4C 8605 hgsc.bcm.edu hg19 19 48565265 48565265 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PLA2G4C NM_001159322 exon14 c.A1277G p.D426G AAAGGATCTCCGG . 59.0 26.0 45.0 0.0 . 76 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657886 49657886 + Silent SNP C C T novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HRC NM_002152 exon1 c.G609A p.E203E GGCCTCCTCTTCC . 158.0 10.0 137.0 0.0 . 85 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657916 49657916 + Silent SNP T T C rs7409255 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HRC NM_002152 exon1 c.A579G p.E193E CTCCTCTTCTCCT . 173.0 16.0 129.0 0.0 . 85 . . Atlas-SNP BRSK1 84446 hgsc.bcm.edu hg19 19 55815939 55815939 + Silent SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BRSK1 NM_032430 exon14 c.A1368G p.S456S CTTTTCACCGGAG . 73.0 5.0 46.0 0.0 . 192 . . Atlas-SNP ZNF835 90485 hgsc.bcm.edu hg19 19 57175640 57175640 + Missense_Mutation SNP C C A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZNF835 NM_001005850 exon2 c.G927T p.Q309H GCAGTCCTGGCAC . 21.0 12.0 16.0 0.0 . 106 . . Atlas-SNP ZNF264 9422 hgsc.bcm.edu hg19 19 57723920 57723920 + Silent SNP C C T rs145421065 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e ZNF264,colon,carcinoma,0,1 ZNF264 NM_003417 exon4 c.C1455T p.C485C TGAGTGCGTGGAG . 72.0 3.0 50.0 0.0 . 65 . C|1.000;T|0.000 Atlas-SNP PSMF1 9491 hgsc.bcm.edu hg19 20 1145055 1145055 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PSMF1 NM_006814 exon6 c.T699C p.P233P ACTTCCTCCAGGC . 118.0 6.0 111.0 0.0 . 27 . . Atlas-SNP CST5 1473 hgsc.bcm.edu hg19 20 23860229 23860229 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . CST5 NM_001900 exon1 c.A85G p.T29A CCAAGGTCCTAGA . 99.0 4.0 63.0 0.0 . 24 . . Atlas-SNP NINL 22981 hgsc.bcm.edu hg19 20 25478915 25478915 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . NINL NM_025176 exon9 c.T1100C p.L367P GTCATGAGCTCGT . 108.0 6.0 86.0 0.0 . 148 . . Atlas-SNP ID1 3397 hgsc.bcm.edu hg19 20 30193564 30193564 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ID1 NM_002165 exon1 c.T374C p.V125A TGCCGGTCCGGGC . 108.0 5.0 121.0 0.0 . 12 . . Atlas-SNP RBM12 10137 hgsc.bcm.edu hg19 20 34240764 34240764 + Silent SNP A A G rs201125389 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e RBM12,rectum,NS,0,2 RBM12 NM_001198840 exon2 c.T2481C p.P827P GGGGCCAGGCCCA . 41.0 3.0 39.0 0.0 . 93 . A|0.996;G|0.004 Atlas-SNP SNX21 90203 hgsc.bcm.edu hg19 20 44469288 44469288 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SNX21 NM_001042633 exon5 c.T469C p.S157P ACACCCTCGCCGT . 86.0 4.0 76.0 0.0 . 23 . . Atlas-SNP LRRC3 81543 hgsc.bcm.edu hg19 21 45877204 45877204 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . LRRC3 NM_030891 exon2 c.T677C p.V226A ACTATGTGCGCCA . 77.0 5.0 84.0 0.0 . 22 . . Atlas-SNP PCBP3 54039 hgsc.bcm.edu hg19 21 47360058 47360058 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PCBP3 NM_020528 exon13 c.A1024G p.T342A CAGATCACCATCA . 90.0 4.0 73.0 0.0 . 82 . . Atlas-SNP SUSD2 56241 hgsc.bcm.edu hg19 22 24582054 24582054 + Silent SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SUSD2 NM_019601 exon9 c.G1410A p.E470E CGGAGAGTACGTG . 220.0 52.0 136.0 0.0 . 68 . . Atlas-SNP MORC2 22880 hgsc.bcm.edu hg19 22 31333805 31333805 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . MORC2 NM_014941 exon15 c.A1180G p.I394V TACCGATGGCAAT . 228.0 110.0 140.0 0.0 . 78 . . Atlas-SNP TNRC6B 23112 hgsc.bcm.edu hg19 22 40660706 40660706 + Missense_Mutation SNP G G A rs367663125 alternate_allele TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . TNRC6B NM_001162501 exon5 c.G472A p.G158S CTTGGAGGTGCTG . 138.0 36.0 94.0 0.0 . 195 . . Atlas-SNP ZBED4 9889 hgsc.bcm.edu hg19 22 50280096 50280096 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZBED4 NM_014838 exon2 c.T2786C p.V929A GGGAGGTCATGCA . 111.0 5.0 165.0 0.0 . 102 . . Atlas-SNP PIM3 415116 hgsc.bcm.edu hg19 22 50355358 50355358 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e PIM3_ENST00000360612,NS,carcinoma,0,1 PIM3 NM_001001852 exon4 c.A515G p.K172R ACATTAAGGACGA . 74.0 4.0 109.0 0.0 . 15 . . Atlas-SNP STS 412 hgsc.bcm.edu hg19 X 7177425 7177425 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . STS NM_000351 exon5 c.A433G p.T145A AGCAAGACTGACT . 98.0 4.0 60.0 0.0 . 64 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 31497178 31497178 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . DMD NM_004006 exon58 c.A8590G p.S2864G GAGTACTCATGAT . 93.0 4.0 72.0 0.0 . 2127 . . Atlas-SNP CHDC2 286464 hgsc.bcm.edu hg19 X 36156122 36156122 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_173695 exon9 c.T1093C p.S365P GACCTTTCAGATG . 91.0 4.0 98.0 0.0 . . . . Atlas-SNP KDM5C 8242 hgsc.bcm.edu hg19 X 53226132 53226132 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KDM5C NM_004187 exon19 c.A2717G p.E906G CCCCTCTCCAACA . 76.0 6.0 68.0 0.0 . 385 . . Atlas-SNP FOXR2 139628 hgsc.bcm.edu hg19 X 55650773 55650773 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . FOXR2 NM_198451 exon1 c.A629G p.H210R ACCCCCACTGTGG . 86.0 4.0 59.0 0.0 . 42 . . Atlas-SNP PJA1 64219 hgsc.bcm.edu hg19 X 68382107 68382107 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . PJA1 NM_145119 exon2 c.A975G p.K325K TTCCCGTTTGTCT . 88.0 5.0 68.0 0.0 . 106 . . Atlas-SNP ERCC6L 54821 hgsc.bcm.edu hg19 X 71426725 71426725 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ERCC6L NM_017669 exon2 c.A1892G p.E631G AGATCCTCGATTG . 83.0 6.0 82.0 0.0 . 98 . . Atlas-SNP IL1RAPL2 26280 hgsc.bcm.edu hg19 X 104728324 104728324 + Silent SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . IL1RAPL2 NM_017416 exon6 c.T717C p.P239P CAAGCCTCCCAAG . 431.0 23.0 180.0 0.0 . 105 . . Atlas-SNP KIAA1210 57481 hgsc.bcm.edu hg19 X 118221124 118221124 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KIAA1210 NM_020721 exon11 c.A4069G p.K1357E TCTGCTTTACAGG . 92.0 4.0 43.0 0.0 . 171 . . Atlas-SNP GRIA3 2892 hgsc.bcm.edu hg19 X 122336604 122336604 + Missense_Mutation SNP C C G rs72609489 TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . GRIA3 NM_001256743 exon3 c.C385G p.P129A GGTGGGCCCGCCA . 133.0 15.0 67.0 0.0 . 386 . . Atlas-SNP HCFC1 3054 hgsc.bcm.edu hg19 X 153230097 153230097 + Missense_Mutation SNP T T C novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . HCFC1 NM_005334 exon2 c.A274G p.T92A GGCGAGTCCCGTC . 250.0 11.0 97.0 0.0 . 284 . . Atlas-SNP G6PD 2539 hgsc.bcm.edu hg19 X 153774307 153774307 + Nonsense_Mutation SNP G G A novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . G6PD NM_000402 exon2 c.C154T p.Q52X CGCCCTGGAAAAG . 60.0 4.0 33.0 0.0 . 73 . . Atlas-SNP USP9Y 8287 hgsc.bcm.edu hg19 Y 14928278 14928278 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . USP9Y NM_004654 exon32 c.A4829G p.E1610G ACAGTGAGGTAAA . 87.0 4.0 54.0 0.0 . 49 . . Atlas-SNP USP9Y 8287 hgsc.bcm.edu hg19 Y 14951989 14951989 + Missense_Mutation SNP A A G novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . USP9Y NM_004654 exon36 c.A5537G p.N1846S CAGAAAATGAGTT . 68.0 4.0 48.0 0.0 . 49 . . Atlas-SNP SRP72 6731 hgsc.bcm.edu hg19 4 57340266 57340277 + In_Frame_Del DEL ATCTCGTCCGAA ATCTCGTCCGAA - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 ATCTCGTCCGAA ATCTCGTCCGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SRP72 NM_001267722 exon4 c.400_411del p.134_137del . . 122.0 20.0 124.0 0.0 . 59 . . Atlas-Indel,Pindel ZIC1 7545 hgsc.bcm.edu hg19 3 147128512 147128526 + In_Frame_Del DEL GCCGCGCATCACGGC GCCGCGCATCACGGC - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 GCCGCGCATCACGGC GCCGCGCATCACGGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZIC1 NM_003412 exon1 c.612_626del p.204_209del . . 49.0 15.0 116.0 0.0 . 141 . . Atlas-Indel,Pindel SLC24A4 123041 hgsc.bcm.edu hg19 14 92953018 92953024 + Frame_Shift_Del DEL TATCGGA TATCGGA - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 TATCGGA TATCGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . SLC24A4 NM_153646 exon14 c.1430_1436del p.477_479del . . 240.0 38.0 224.0 0.0 . 112 . . Atlas-Indel,Pindel BRCA2 675 hgsc.bcm.edu hg19 13 32953916 32953924 + In_Frame_Del DEL GATTTATAT GATTTATAT - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 GATTTATAT GATTTATAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . BRCA2 NM_000059 exon23 c.8982_8990del p.2994_2997del . . 162.0 17.0 175.0 0.0 . 812 . . Atlas-Indel,Pindel KDM4D 55693 hgsc.bcm.edu hg19 11 94732090 94732104 + In_Frame_Del DEL CTGGGCCCCTGTGCC CTGGGCCCCTGTGCC - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 CTGGGCCCCTGTGCC CTGGGCCCCTGTGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . KDM4D NM_018039 exon3 c.1553_1567del p.518_523del . . 135.0 20.0 125.0 0.0 . 58 . . Atlas-Indel,Pindel RBM6 10180 hgsc.bcm.edu hg19 3 50103698 50103698 + Frame_Shift_Del DEL C C - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . RBM6 NM_005777 exon17 c.2705delT p.I902fs . . 52.0 16.0 44.0 0.0 . 85 . . Atlas-Indel,Pindel ZFAT 57623 hgsc.bcm.edu hg19 8 135545117 135545124 + Frame_Shift_Del DEL CACGTTGG CACGTTGG - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 CACGTTGG CACGTTGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . ZFAT NM_020863 exon12 c.3069_3076del p.1023_1026del . . 63.0 10.0 66.0 0.0 . 265 . . Atlas-Indel,Pindel GSE1 23199 hgsc.bcm.edu hg19 16 85687882 85687996 + Frame_Shift_Del DEL ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . . NM_014615 exon4 c.427_443del p.143_148del . . 75.0 19.0 0.0 0.0 . . . . Pindel XRCC6 2547 hgsc.bcm.edu hg19 22 42057392 42057407 + Frame_Shift_Del DEL AGCTTGTTTACCCACC AGCTTGTTTACCCACC - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 AGCTTGTTTACCCACC AGCTTGTTTACCCACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . XRCC6 NM_001469 exon12 c.1579_1594del p.527_532del . . 101.0 14.0 0.0 0.0 . 64 . . Pindel EPN2 22905 hgsc.bcm.edu hg19 17 19186829 19186873 + In_Frame_Del DEL CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT - novel TCGA-FV-A2QR-01A-11D-A20W-10 TCGA-FV-A2QR-11A-11D-A20W-10 CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34b26fff-981d-4f15-b59f-68a9208af0f5 39ada55b-dcea-4e2e-81da-374a3020c56e . EPN2 NM_148921 exon3 c.396_440del p.132_147del . . 50.0 15.0 0.0 0.0 . 52 . . Pindel