Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CROCC 9696 hgsc.bcm.edu hg19 1 17256975 17256975 + Missense_Mutation SNP G G T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . CROCC NM_014675 exon7 c.G735T p.Q245H GGACCAGGCAGGC . 123.0 25.0 150.0 0.0 . 185 . . Atlas-SNP SLC44A5 204962 hgsc.bcm.edu hg19 1 75684996 75684996 + Missense_Mutation SNP T T A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SLC44A5 NM_152697 exon16 c.A1212T p.K404N TATGACTTTGTAT . 51.0 20.0 87.0 0.0 . 231 . . Atlas-SNP CD2 914 hgsc.bcm.edu hg19 1 117311336 117311336 + Silent SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . CD2 NM_001767 exon5 c.C987A p.P329P CCTCCCCAGACCT . 109.0 35.0 148.0 0.0 . 43 . . Atlas-SNP SHC1 6464 hgsc.bcm.edu hg19 1 154941042 154941042 + Missense_Mutation SNP A A C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SHC1 NM_183001 exon4 c.T679G p.F227V CAGCAAATTTCAG . 146.0 64.0 156.0 0.0 . 91 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158612680 158612680 + Missense_Mutation SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SPTA1 NM_003126 exon32 c.A4529G p.E1510G AGCTCCTCAAGGT . 292.0 13.0 276.0 0.0 . 720 . . Atlas-SNP PIGM 93183 hgsc.bcm.edu hg19 1 160001525 160001525 + Missense_Mutation SNP C C G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . PIGM NM_145167 exon1 c.G5C p.G2A GTGGAGCCCATGA . 104.0 17.0 105.0 0.0 . 27 . . Atlas-SNP PRG4 10216 hgsc.bcm.edu hg19 1 186277380 186277380 + Silent SNP T T A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . PRG4 NM_005807 exon7 c.T2529A p.A843A GCCTGCTCCAACT . 261.0 23.0 277.0 0.0 . 259 . . Atlas-SNP PRG4 10216 hgsc.bcm.edu hg19 1 186277383 186277383 + Silent SNP A A C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . PRG4 NM_005807 exon7 c.A2532C p.P844P TGCTCCAACTACT . 266.0 29.0 275.0 0.0 . 259 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237802427 237802427 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . RYR2 NM_001035 exon46 c.G7041A p.M2347I AGCAATGGAAGAA . 201.0 93.0 199.0 0.0 . 1273 . . Atlas-SNP POMC 5443 hgsc.bcm.edu hg19 2 25384548 25384548 + Missense_Mutation SNP G G C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . POMC NM_001035256 exon4 c.C206G p.P69R GTCAGAGGCTGCT . 80.0 19.0 113.0 0.0 . 33 . . Atlas-SNP NXPH2 11249 hgsc.bcm.edu hg19 2 139428887 139428887 + Missense_Mutation SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . NXPH2 NM_007226 exon2 c.A400G p.I134V CAACAATTTTCCC . 113.0 30.0 191.0 0.0 . 63 . . Atlas-SNP CCDC141 285025 hgsc.bcm.edu hg19 2 179753268 179753268 + Missense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . CCDC141 NM_173648 exon9 c.G1393T p.G465C GGTAACCCTCCAC . 78.0 19.0 162.0 0.0 . 362 . . Atlas-SNP SF3B1 23451 hgsc.bcm.edu hg19 2 198267752 198267752 + Missense_Mutation SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SF3B1 NM_012433 exon13 c.T1727C p.V576A ATGACCACGAGGA . 90.0 23.0 149.0 0.0 . 1038 . . Atlas-SNP ERBB4 2066 hgsc.bcm.edu hg19 2 212543852 212543852 + Missense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ERBB4 NM_001042599 exon13 c.G1547T p.G516V TCTGGCCCAGGTC . 172.0 43.0 256.0 0.0 . 480 . . Atlas-SNP TTLL4 9654 hgsc.bcm.edu hg19 2 219619007 219619007 + Silent SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . TTLL4 NM_014640 exon20 c.T3495C p.S1165S CCTTTCTACCCAG . 136.0 29.0 190.0 0.0 . 96 . . Atlas-SNP SGPP2 130367 hgsc.bcm.edu hg19 2 223423159 223423159 + Missense_Mutation SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SGPP2 NM_152386 exon5 c.C742T p.L248F AGCCCCCTCTTCC . 211.0 55.0 356.0 0.0 . 39 . . Atlas-SNP GADL1 339896 hgsc.bcm.edu hg19 3 30827899 30827899 + Splice_Site SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . GADL1 NM_207359 exon14 c.1251-1G>A . AGGTACCTAAAAT . 52.0 16.0 105.0 0.0 . 91 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41274911 41274911 + Missense_Mutation SNP T T A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 CTNNB1,NS,carcinoma,0,5 CTNNB1 NM_001098209 exon8 c.T1161A p.N387K CAGGAATCTTTCA . 100.0 22.0 162.0 0.0 . 4904 . . Atlas-SNP CCDC36 339834 hgsc.bcm.edu hg19 3 49294178 49294178 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . CCDC36 NM_001135197 exon8 c.G1248A p.M416I AAGTATGTTTTTG . 81.0 17.0 145.0 0.0 . 77 . . Atlas-SNP TMF1 7110 hgsc.bcm.edu hg19 3 69084238 69084238 + Missense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . TMF1 NM_007114 exon9 c.G2180T p.R727L TCTGTACGCTGCA . 122.0 41.0 183.0 0.0 . 77 . . Atlas-SNP MYH15 22989 hgsc.bcm.edu hg19 3 108220704 108220704 + Splice_Site SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . MYH15 NM_014981 exon5 c.256-2A>G . AGACTCTGCAGAG . 77.0 19.0 148.0 0.0 . 223 . . Atlas-SNP CD200R1L 344807 hgsc.bcm.edu hg19 3 112548190 112548190 + Missense_Mutation SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . CD200R1L NM_001008784 exon2 c.A88G p.N30D AATAGTTCTGTGT . 157.0 34.0 231.0 0.0 . 47 . . Atlas-SNP KIAA1407 57577 hgsc.bcm.edu hg19 3 113720527 113720527 + Missense_Mutation SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . KIAA1407 NM_020817 exon13 c.A2078G p.Q693R TCCTCTTGGGCCT . 211.0 63.0 319.0 0.0 . 80 . . Atlas-SNP ENAM 10117 hgsc.bcm.edu hg19 4 71508497 71508497 + Missense_Mutation SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ENAM NM_031889 exon9 c.A1354G p.K452E CCTACAAAGAATC . 46.0 12.0 92.0 0.0 . 140 . . Atlas-SNP MMRN1 22915 hgsc.bcm.edu hg19 4 90856345 90856345 + Missense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . MMRN1 NM_007351 exon6 c.C1514A p.S505Y ATGAATCCCTCAA . 134.0 26.0 216.0 0.0 . 174 . . Atlas-SNP SMARCAD1 56916 hgsc.bcm.edu hg19 4 95198291 95198291 + Missense_Mutation SNP G G T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SMARCAD1 NM_001128429 exon16 c.G2063T p.R688I TACGAAGAATGTT . 84.0 19.0 125.0 0.0 . 97 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13794081 13794081 + Silent SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . DNAH5 NM_001369 exon48 c.T7974C p.D2658D ATTCACATCATCA . 225.0 118.0 243.0 0.0 . 868 . . Atlas-SNP CDH18 1016 hgsc.bcm.edu hg19 5 19483500 19483500 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 CDH18_ENST00000507958,colon,carcinoma,0,4 CDH18 NM_004934 exon12 c.C1792T p.R598W AGGTCCGCACACG . 322.0 61.0 234.0 0.0 . 561 . . Atlas-SNP RAD1 5810 hgsc.bcm.edu hg19 5 34914840 34914840 + Missense_Mutation SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . RAD1 NM_002853 exon2 c.T158C p.V53A TTTTCCACTGTTA . 185.0 116.0 179.0 1.0 . 17 . . Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37226698 37226698 + Missense_Mutation SNP T T A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . C5orf42 NM_023073 exon12 c.A1999T p.T667S TTACAGTATTTGA . 184.0 42.0 142.0 0.0 . 422 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71489897 71489897 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . MAP1B NM_005909 exon5 c.G715A p.V239I GTGGAAGTCCCAT . 83.0 13.0 144.0 0.0 . 243 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89989829 89989829 + Missense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . GPR98 NM_032119 exon33 c.C7256A p.P2419H GGGTGCCTGACCC . 109.0 31.0 169.0 0.0 . 605 . . Atlas-SNP GRIA1 2890 hgsc.bcm.edu hg19 5 153149817 153149817 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 GRIA1_ENST00000544403,NS,malignant_melanoma,0,2 GRIA1 NM_001258021 exon13 c.G2142A p.M714I GGGGATGATTCGA . 122.0 63.0 181.0 0.0 . 321 . . Atlas-SNP ARG1 383 hgsc.bcm.edu hg19 6 131904974 131904974 + Missense_Mutation SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ARG1 NM_001244438 exon8 c.A919G p.I307V GTTGCAATAACCT . 78.0 44.0 85.0 0.0 . 33 . . Atlas-SNP PDK4 5166 hgsc.bcm.edu hg19 7 95222151 95222151 + Silent SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . PDK4 NM_002612 exon4 c.C450T p.V150V ATTGGTGACTGGG . 129.0 35.0 189.0 0.0 . 42 . . Atlas-SNP ZBTB10 65986 hgsc.bcm.edu hg19 8 81412172 81412172 + Silent SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ZBTB10 NM_023929 exon2 c.A1416G p.P472P AGCTCCAGAGTCT . 77.0 16.0 68.0 0.0 . 51 . . Atlas-SNP SLC39A4 55630 hgsc.bcm.edu hg19 8 145641255 145641255 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SLC39A4 NM_130849 exon2 c.C413T p.P138L AGGCCCGGGGTCA . 111.0 7.0 19.0 0.0 . 54 . . Atlas-SNP ZCCHC7 84186 hgsc.bcm.edu hg19 9 37302184 37302184 + Splice_Site SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ZCCHC7 NM_032226 exon3 c.611-1G>A . TTTGTAGGAGAAG . 38.0 7.0 75.0 0.0 . 56 . . Atlas-SNP FAM120A 23196 hgsc.bcm.edu hg19 9 96318785 96318785 + Missense_Mutation SNP G G T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . FAM120A NM_014612 exon13 c.G2396T p.W799L GTCCTTGGATGTA . 132.0 34.0 180.0 0.0 . 105 . . Atlas-SNP ZNF169 169841 hgsc.bcm.edu hg19 9 97063227 97063227 + Missense_Mutation SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ZNF169 NM_194320 exon5 c.T1387C p.C463R CCTGATTGTGGGC . 77.0 17.0 99.0 0.0 . 60 . . Atlas-SNP ZNF169 169841 hgsc.bcm.edu hg19 9 97063234 97063234 + Missense_Mutation SNP G G C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ZNF169 NM_194320 exon5 c.G1394C p.R465P GTGGGCGTGGCTT . 82.0 16.0 114.0 0.0 . 60 . . Atlas-SNP SFMBT2 57713 hgsc.bcm.edu hg19 10 7327859 7327859 + Nonsense_Mutation SNP G G T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 SFMBT2,NS,malignant_melanoma,0,1 SFMBT2 NM_001029880 exon5 c.C494A p.S165X GTCCTCGAACCAG . 179.0 31.0 233.0 0.0 . 209 . . Atlas-SNP SFMBT2 57713 hgsc.bcm.edu hg19 10 7327860 7327860 + Missense_Mutation SNP A A T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SFMBT2 NM_001029880 exon5 c.T493A p.S165T TCCTCGAACCAGT . 179.0 31.0 233.0 0.0 . 209 . . Atlas-SNP ALOX5 240 hgsc.bcm.edu hg19 10 45939709 45939709 + Missense_Mutation SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ALOX5 NM_000698 exon13 c.C1820T p.A607V TGTGGGCGCTGAG . 118.0 11.0 102.0 0.0 . 88 . . Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 50025347 50025347 + Nonsense_Mutation SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 WDFY4,NS,carcinoma,0,1 WDFY4 NM_020945 exon32 c.C5398T p.Q1800X GTGCTGCAGTTCC . 63.0 19.0 83.0 0.0 . 205 . . Atlas-SNP ACTR1A 10121 hgsc.bcm.edu hg19 10 104247919 104247919 + Silent SNP A A C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ACTR1A NM_005736 exon4 c.T303G p.T101T TGAGAAAGTCTGC . 73.0 17.0 129.0 0.0 . 26 . . Atlas-SNP ADD3 120 hgsc.bcm.edu hg19 10 111883814 111883814 + Missense_Mutation SNP C C G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ADD3 NM_001121 exon10 c.C1183G p.R395G CTCATTCGAGAGA . 72.0 22.0 75.0 0.0 . 89 . . Atlas-SNP USP47 55031 hgsc.bcm.edu hg19 11 11963990 11963990 + Missense_Mutation SNP C C G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . USP47 NM_017944 exon19 c.C2218G p.L740V GTTTTGCTACCTG . 67.0 14.0 113.0 0.0 . 91 . . Atlas-SNP OR10Q1 219960 hgsc.bcm.edu hg19 11 57995759 57995759 + Missense_Mutation SNP T T A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . OR10Q1 NM_001004471 exon1 c.A589T p.I197F CGCGGATGTCAGC . 114.0 42.0 172.0 0.0 . 79 . . Atlas-SNP MS4A15 219995 hgsc.bcm.edu hg19 11 60543106 60543106 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . MS4A15 NM_001098835 exon7 c.G641A p.S214N CCTTCAGCGCAGA . 45.0 17.0 99.0 0.0 . 37 . . Atlas-SNP TECTA 7007 hgsc.bcm.edu hg19 11 120989400 120989400 + Silent SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . TECTA NM_005422 exon6 c.C1176T p.I392I TCTCATCCCCAAA . 54.0 12.0 89.0 0.0 . 329 . . Atlas-SNP UBE2N 7334 hgsc.bcm.edu hg19 12 93835640 93835640 + Missense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 UBE2N,NS,carcinoma,0,1 UBE2N NM_003348 exon1 c.G21T p.R7S GATGATCCTGCGG . 199.0 55.0 258.0 0.0 . 20 . . Atlas-SNP DHX37 57647 hgsc.bcm.edu hg19 12 125451669 125451669 + Missense_Mutation SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . DHX37 NM_032656 exon11 c.G1504A p.E502K CTTTACCTTGTGG . 87.0 7.0 103.0 0.0 . 114 . . Atlas-SNP PGAM5 192111 hgsc.bcm.edu hg19 12 133291565 133291565 + Missense_Mutation SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . PGAM5 NM_138575 exon2 c.C313T p.H105Y ATCAGGCATTCCC . 112.0 25.0 185.0 0.0 . 18 . . Atlas-SNP ZMYM5 9205 hgsc.bcm.edu hg19 13 20411886 20411886 + Silent SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ZMYM5 NM_001039650 exon6 c.A948G p.T316T ACAAGATGTACTA . 76.0 12.0 168.0 0.0 . 73 . . Atlas-SNP STARD13 90627 hgsc.bcm.edu hg19 13 33703451 33703451 + Missense_Mutation SNP G G C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 STARD13,NS,carcinoma,0,1 STARD13 NM_178006 exon5 c.C1363G p.R455G TGACTCGGCTGGC . 66.0 20.0 122.0 1.0 . 100 . . Atlas-SNP TRPC4 7223 hgsc.bcm.edu hg19 13 38211433 38211433 + Silent SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . TRPC4 NM_003306 exon11 c.A2556G p.L852L ATGAAATAACCCA . 72.0 26.0 141.0 0.0 . 389 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39261907 39261907 + Silent SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . FREM2 NM_207361 exon1 c.C426A p.G142G CCTGGGCGCGCGC . 42.0 17.0 12.0 0.0 . 385 . . Atlas-SNP EFNB2 1948 hgsc.bcm.edu hg19 13 107164993 107164993 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . EFNB2 NM_004093 exon2 c.C290T p.P97L AGGAGAGGGGTAT . 123.0 36.0 225.0 0.0 . 39 . . Atlas-SNP MNS1 55329 hgsc.bcm.edu hg19 15 56748716 56748716 + Missense_Mutation SNP C C G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . MNS1 NM_018365 exon3 c.G229C p.E77Q TTTCTTCTGCCTG . 104.0 32.0 279.0 0.0 . 39 . . Atlas-SNP SPESP1 246777 hgsc.bcm.edu hg19 15 69238762 69238762 + Missense_Mutation SNP G G C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SPESP1 NM_145658 exon2 c.G889C p.E297Q GACATCGAAACTG . 51.0 12.0 127.0 0.0 . 39 . . Atlas-SNP TBC1D21 161514 hgsc.bcm.edu hg19 15 74177139 74177139 + Missense_Mutation SNP A A C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . TBC1D21 NM_153356 exon5 c.A385C p.I129L CAGAAAATCTATG . 88.0 33.0 109.0 0.0 . 38 . . Atlas-SNP WDR24 84219 hgsc.bcm.edu hg19 16 735892 735892 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . WDR24 NM_032259 exon5 c.C1550T p.S517L GTGGCCGAGGAGT . 93.0 30.0 132.0 0.0 . 111 . . Atlas-SNP VWA3A 146177 hgsc.bcm.edu hg19 16 22162149 22162149 + Missense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . VWA3A NM_173615 exon30 c.C3263A p.S1088Y CCATTTCCTTGAA . 70.0 17.0 108.0 0.0 . 115 . . Atlas-SNP VWA3A 146177 hgsc.bcm.edu hg19 16 22162150 22162150 + Silent SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . VWA3A NM_173615 exon30 c.C3264A p.S1088S CATTTCCTTGAAC . 70.0 15.0 108.0 0.0 . 115 . . Atlas-SNP SF3B3 23450 hgsc.bcm.edu hg19 16 70595533 70595533 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SF3B3 NM_012426 exon17 c.G2134A p.V712I CCTCAGGTATTGG . 46.0 8.0 79.0 0.0 . 99 . . Atlas-SNP PER1 5187 hgsc.bcm.edu hg19 17 8051980 8051980 + Missense_Mutation SNP T T C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . PER1 NM_002616 exon8 c.A1030G p.I344V AATGGATGCGCTC . 72.0 19.0 64.0 0.0 . 104 . . Atlas-SNP CD300C 10871 hgsc.bcm.edu hg19 17 72539019 72539019 + Nonsense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . CD300C NM_006678 exon3 c.G508T p.E170X TGGGTTCGGGGCT . 118.0 37.0 144.0 0.0 . 41 . . Atlas-SNP CD300C 10871 hgsc.bcm.edu hg19 17 72539020 72539020 + Silent SNP G G T rs147705680 alternate_allele TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . CD300C NM_006678 exon3 c.C507A p.P169P GGGTTCGGGGCTG . 121.0 37.0 145.0 0.0 . 41 . G|1.000;A|0.000 Atlas-SNP ACOX1 51 hgsc.bcm.edu hg19 17 73975154 73975154 + Missense_Mutation SNP T T G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ACOX1 NM_007292 exon1 c.A1C p.M1L GGTTCATGGCGAC . 36.0 8.0 61.0 0.0 . 85 . . Atlas-SNP OGFOD3 79701 hgsc.bcm.edu hg19 17 80373361 80373361 + Missense_Mutation SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . . NM_175902 exon2 c.G217A p.V73I CCAGGACCTCTGC . 77.0 25.0 74.0 0.0 . . . . Atlas-SNP DCC 1630 hgsc.bcm.edu hg19 18 50918256 50918256 + Missense_Mutation SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . DCC NM_005215 exon17 c.A2687G p.K896R AATACAAGGTGAA . 49.0 20.0 52.0 0.0 . 360 . . Atlas-SNP ANKRD24 170961 hgsc.bcm.edu hg19 19 4224480 4224480 + Missense_Mutation SNP G G C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ANKRD24 NM_133475 exon22 c.G3419C p.R1140T TGCAGAGACTCCA . 48.0 15.0 84.0 0.0 . 180 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 8994178 8994178 + Missense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . MUC16 NM_024690 exon65 c.G41507T p.G13836V AGAGGGCCAACAC . 93.0 22.0 123.0 0.0 . 4315 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38384931 38384931 + Missense_Mutation SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . WDR87 NM_031951 exon4 c.G1295A p.R432Q AGACCCCGCCCCA . 68.0 16.0 153.0 0.0 . 191 . . Atlas-SNP KLK8 11202 hgsc.bcm.edu hg19 19 51503826 51503826 + Silent SNP T T A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . KLK8 NM_144505 exon3 c.A219T p.A73A CTCCTGTGCCCTG . 74.0 28.0 101.0 0.0 . 46 . . Atlas-SNP LILRA6 79168 hgsc.bcm.edu hg19 19 54746124 54746124 + Missense_Mutation SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . LILRA6 NM_024318 exon3 c.G133A p.V45M TGGTCACGGGGCT . 379.0 57.0 601.0 0.0 . 75 . . Atlas-SNP LILRB4 11006 hgsc.bcm.edu hg19 19 55176617 55176617 + Missense_Mutation SNP C C T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . LILRB4 NM_006847 exon6 c.C743T p.S248L CAGGGTCAGTCCC . 162.0 38.0 225.0 0.0 . 86 . . Atlas-SNP CHRNA4 1137 hgsc.bcm.edu hg19 20 61978128 61978128 + Missense_Mutation SNP C C A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . CHRNA4 NM_000744 exon6 c.G1846T p.G616C AGAGGCCCACCGT . 72.0 29.0 57.0 0.0 . 98 . . Atlas-SNP SAMSN1 64092 hgsc.bcm.edu hg19 21 15873032 15873032 + Missense_Mutation SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . SAMSN1 NM_001256370 exon7 c.T790C p.C264R TTTTGCAAATAAT . 98.0 12.0 180.0 0.0 . 112 . . Atlas-SNP DYRK1A 1859 hgsc.bcm.edu hg19 21 38865436 38865436 + Nonsense_Mutation SNP G G T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . DYRK1A NM_001396 exon7 c.G1069T p.G357X CACACTGGAGAAC . 73.0 16.0 132.0 0.0 . 85 . . Atlas-SNP GAB4 128954 hgsc.bcm.edu hg19 22 17450871 17450871 + Missense_Mutation SNP G G T novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . GAB4 NM_001037814 exon4 c.C899A p.T300N CCTCTGGTGTGGC . 77.0 29.0 152.0 0.0 . 95 . . Atlas-SNP RASD2 23551 hgsc.bcm.edu hg19 22 35947948 35947948 + Missense_Mutation SNP G G A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . RASD2 NM_014310 exon3 c.G670A p.E224K GTCAAGGAGATGG . 54.0 15.0 74.0 0.0 . 34 . . Atlas-SNP PCDH11Y 83259 hgsc.bcm.edu hg19 Y 4968507 4968507 + Missense_Mutation SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . PCDH11Y NM_032972 exon2 c.A2888G p.D963G AGCCTGACAGCCC . 46.0 21.0 59.0 0.0 . 163 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 12699 12699 + Silent SNP A A G novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . . ENST00000361567 exon1 c.A363G p.L121L ATATCTACTCATC . 230.0 211.0 4.0 0.0 . . . . Atlas-SNP PRDM16 63976 hgsc.bcm.edu hg19 1 3322119 3322120 + Frame_Shift_Ins INS - - C novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . PRDM16 NM_022114 exon8 c.1093_1094insC p.A365fs . . 84.0 11.0 39.0 0.0 . 147 . . Atlas-INDEL NLRP8 126205 hgsc.bcm.edu hg19 19 56473481 56473482 + Frame_Shift_Del DEL TG TG - novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . NLRP8 NM_176811 exon4 c.2090_2091del p.697_697del . . 142.0 15.0 173.0 0.0 . 225 . . Atlas-Indel,Pindel ALB 213 hgsc.bcm.edu hg19 4 74274387 74274388 + Frame_Shift_Ins INS - - A novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . ALB NM_000477 exon4 c.347_348insA p.A116fs . . 78.0 20.0 141.0 0.0 . 132 . . Atlas-INDEL NFKBIA 4792 hgsc.bcm.edu hg19 14 35871997 35872005 + In_Frame_Del DEL CCAAGGACA CCAAGGACA - novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 CCAAGGACA CCAAGGACA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . NFKBIA NM_020529 exon4 c.609_617del p.203_206del . . 76.0 12.0 110.0 0.0 . 28 . . Atlas-INDEL PRG4 10216 hgsc.bcm.edu hg19 1 186277360 186277383 + In_Frame_Del DEL ACTACCCCCAAGAAGCCTGCTCCA ACTACCCCCAAGAAGCCTGCTCCA - novel TCGA-EP-A3JL-01A-11D-A20W-10 TCGA-EP-A3JL-10A-01D-A20W-10 ACTACCCCCAAGAAGCCTGCTCCA ACTACCCCCAAGAAGCCTGCTCCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3c3e9b90-d106-48ce-a6d4-999adc5870e0 87055f49-edc2-4751-a7c5-8715fea95a43 . PRG4 NM_005807 exon7 c.2508_2531del p.836_844del . . 262.0 16.0 272.0 0.0 . 259 . . Pindel