Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ACAP3 116983 hgsc.bcm.edu hg19 1 1231249 1231249 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ACAP3 NM_030649 exon18 c.A1572G p.A524A GGCTGGTGCCATG . 83.0 4.0 110.0 0.0 . 87 . . Atlas-SNP NADK 65220 hgsc.bcm.edu hg19 1 1685559 1685559 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NADK NM_001198994 exon12 c.G1467T p.M489I CGTGATCATGATG . 117.0 5.0 190.0 0.0 . 79 . . Atlas-SNP PANK4 55229 hgsc.bcm.edu hg19 1 2451799 2451799 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PANK4 NM_018216 exon5 c.A661G p.T221A AGAAGGTGCCGCC . 82.0 4.0 104.0 0.0 . 64 . . Atlas-SNP TPRG1L 127262 hgsc.bcm.edu hg19 1 3544177 3544177 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TPRG1L NM_182752 exon4 c.C584A p.P195Q AACACCCGATGGC . 95.0 4.0 118.0 0.0 . 24 . . Atlas-SNP H6PD 9563 hgsc.bcm.edu hg19 1 9324411 9324411 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d H6PD,NS,carcinoma,0,1 H6PD NM_004285 exon5 c.A1859G p.D620G TGGTTGACGAGCG . 60.0 4.0 109.0 2.0 . 71 . . Atlas-SNP TMEM201 199953 hgsc.bcm.edu hg19 1 9662234 9662234 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMEM201 NM_001010866 exon6 c.T1064C p.L355P ACACGCTCAAGTT . 97.0 4.0 185.0 0.0 . 63 . . Atlas-SNP MTOR 2475 hgsc.bcm.edu hg19 1 11186822 11186822 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MTOR NM_004958 exon46 c.C6383T p.P2128L AGTTTTGGGGAAA . 93.0 4.0 125.0 0.0 . 327 . . Atlas-SNP VPS13D 55187 hgsc.bcm.edu hg19 1 12516140 12516140 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS13D NM_015378 exon66 c.C12420A p.A4140A TGCAGCCACAAGT . 62.0 4.0 84.0 0.0 . 316 . . Atlas-SNP CROCC 9696 hgsc.bcm.edu hg19 1 17265407 17265407 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CROCC NM_014675 exon12 c.G1378A p.V460I CAGGCCGTCTTGT . 80.0 4.0 129.0 0.0 . 185 . . Atlas-SNP PADI4 23569 hgsc.bcm.edu hg19 1 17674451 17674451 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PADI4 NM_012387 exon10 c.G1063T p.G355C GAGATCGGCTACA . 65.0 4.0 119.0 0.0 . 70 . . Atlas-SNP KLHDC7A 127707 hgsc.bcm.edu hg19 1 18807714 18807714 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLHDC7A NM_152375 exon1 c.C239T p.P80L GGGGGCCAAGACG . 97.0 4.0 125.0 0.0 . 60 . . Atlas-SNP UBR4 23352 hgsc.bcm.edu hg19 1 19407897 19407897 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UBR4 NM_020765 exon103 c.G15179A p.R5060Q AGCCTCCGCAAGA . 103.0 11.0 93.0 0.0 . 415 . . Atlas-SNP UBR4 23352 hgsc.bcm.edu hg19 1 19433073 19433073 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UBR4 NM_020765 exon83 c.G12383T p.W4128L CGCAGCCAGTTGT . 30.0 4.0 46.0 0.0 . 415 . . Atlas-SNP UBR4 23352 hgsc.bcm.edu hg19 1 19501462 19501462 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UBR4 NM_020765 exon21 c.C2839A p.R947R CAAGTCGGTTCAA . 109.0 5.0 133.0 0.0 . 415 . . Atlas-SNP PLA2G2F 64600 hgsc.bcm.edu hg19 1 20466705 20466705 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLA2G2F NM_022819 exon2 c.G163A p.G55S CTTGCTGGCAGCG . 64.0 4.0 108.0 0.0 . 28 . . Atlas-SNP PINK1 65018 hgsc.bcm.edu hg19 1 20971140 20971140 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d PINK1,NS,carcinoma,0,1 PINK1 NM_032409 exon4 c.C934T p.R312W CATGGCCGGACGC . 47.0 2.0 57.0 0.0 . 37 . . Atlas-SNP ALPL 249 hgsc.bcm.edu hg19 1 21902359 21902359 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ALPL NM_000478 exon10 c.G1131T p.A377A CACTGCGGACCAT . 108.0 5.0 129.0 0.0 . 50 . . Atlas-SNP HSPG2 3339 hgsc.bcm.edu hg19 1 22170757 22170757 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HSPG2 NM_005529 exon65 c.T8500C p.S2834P AGGAGGAGGGCTC . 105.0 5.0 184.0 0.0 . 311 . . Atlas-SNP HSPG2 3339 hgsc.bcm.edu hg19 1 22175467 22175467 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HSPG2 NM_005529 exon58 c.G7504A p.V2502M GGCACACGTACTC . 97.0 4.0 130.0 0.0 . 311 . . Atlas-SNP EPHB2 2048 hgsc.bcm.edu hg19 1 23110887 23110887 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EPHB2 NM_004442 exon3 c.G129T p.W43C ACAGTGGGAAGAG . 97.0 4.0 151.0 0.0 . 257 . . Atlas-SNP TCEA3 6920 hgsc.bcm.edu hg19 1 23710837 23710837 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TCEA3 NM_003196 exon11 c.1038+2T>C . ATACAGACCTTCC . 55.0 4.0 91.0 0.0 . 20 . . Atlas-SNP FUCA1 2517 hgsc.bcm.edu hg19 1 24186295 24186295 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FUCA1 NM_000147 exon4 c.C761A p.P254H TTGACAGGGCTGT . 73.0 4.0 90.0 0.0 . 24 . . Atlas-SNP WDTC1 23038 hgsc.bcm.edu hg19 1 27627864 27627864 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDTC1 NM_001276252 exon13 c.A1380G p.K460K CTTCAAAGGGAAA . 74.0 4.0 116.0 0.0 . 69 . . Atlas-SNP AHDC1 27245 hgsc.bcm.edu hg19 1 27876114 27876114 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AHDC1 NM_001029882 exon6 c.G2513A p.G838D AAGTAGCCGGTGA . 99.0 4.0 170.0 0.0 . 98 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34033348 34033348 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CSMD2 NM_052896 exon54 c.C8156A p.P2719H GGCTCAGGAGTCC . 125.0 5.0 142.0 0.0 . 946 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34080170 34080170 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CSMD2,caecum,carcinoma,0,1 CSMD2 NM_052896 exon40 c.G5947T p.G1983C GGAAGCCGGGGCT . 61.0 3.0 71.0 1.0 . 946 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34089068 34089068 + Splice_Site SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CSMD2 NM_052896 exon37 c.5506-2A>G . TGGATCTGGGAAG . 113.0 5.0 136.0 0.0 . 946 . . Atlas-SNP MAP7D1 55700 hgsc.bcm.edu hg19 1 36636731 36636731 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MAP7D1 NM_018067 exon2 c.A206G p.E69G AACCAGAGAGCCC . 77.0 4.0 119.0 0.0 . 62 . . Atlas-SNP SH3D21 79729 hgsc.bcm.edu hg19 1 36785547 36785547 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SH3D21 NM_001162530 exon14 c.T1283C p.I428T CTTCTATCCCAGA . 69.0 5.0 83.0 0.0 . 73 . . Atlas-SNP KCNQ4 9132 hgsc.bcm.edu hg19 1 41285131 41285131 + Missense_Mutation SNP T T C rs80358276 bycluster;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNQ4 NM_004700 exon5 c.T821C p.L274P ACTCGCTCTGGTG . 137.0 6.0 237.0 0.0 . 58 . . Atlas-SNP PTPRF 5792 hgsc.bcm.edu hg19 1 44083444 44083444 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d PTPRF,colon,carcinoma,0,1 PTPRF NM_002840 exon25 c.C4233A p.I1411I CTACATCGATGGC . 116.0 6.0 144.0 0.0 . 172 . . Atlas-SNP RNF220 55182 hgsc.bcm.edu hg19 1 45115396 45115396 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RNF220 NM_018150 exon13 c.A1509G p.E503E ACTTGAACGGCAG . 97.0 4.0 122.0 0.0 . 56 . . Atlas-SNP MUTYH 4595 hgsc.bcm.edu hg19 1 45797951 45797951 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d MUTYH,NS,chondrosarcoma,0,1 MUTYH NM_001128425 exon10 c.C820A p.R274R CTGGCCGGGCTGG . 51.0 3.0 87.0 0.0 . 38 . . Atlas-SNP CYP4B1 1580 hgsc.bcm.edu hg19 1 47264911 47264911 + Nonsense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CYP4B1,extremity,malignant_melanoma,0,1 CYP4B1 NM_000779 exon1 c.G158A p.W53X CCCACTGGCTTTT . 70.0 25.0 137.0 0.0 . 81 . . Atlas-SNP C8B 732 hgsc.bcm.edu hg19 1 57399139 57399139 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C8B NM_000066 exon10 c.T1421C p.V474A GCTGTCACTAGTT . 88.0 5.0 100.0 0.0 . 107 . . Atlas-SNP KANK4 163782 hgsc.bcm.edu hg19 1 62739434 62739434 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KANK4 NM_181712 exon3 c.C1342A p.R448R CTCCTCGGTGCCC . 113.0 5.0 140.0 0.0 . 135 . . Atlas-SNP PGM1 5236 hgsc.bcm.edu hg19 1 64114221 64114221 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PGM1 NM_001172818 exon8 c.G1232T p.W411L GACTGTGGGCTGT . 59.0 4.0 70.0 0.0 . 75 . . Atlas-SNP DIRAS3 9077 hgsc.bcm.edu hg19 1 68512864 68512864 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DIRAS3 NM_004675 exon2 c.C117T p.R39R CACGACGCGGTAA . 106.0 30.0 147.0 0.0 . 31 . . Atlas-SNP LRRC7 57554 hgsc.bcm.edu hg19 1 70504859 70504859 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRRC7 NM_020794 exon19 c.C3238A p.P1080T GGATACCCACCGA . 93.0 4.0 121.0 0.0 . 400 . . Atlas-SNP SRSF11 9295 hgsc.bcm.edu hg19 1 70710417 70710417 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SRSF11 NM_001190987 exon9 c.G851T p.R284L GGAGTCGGCGACG . 115.0 6.0 129.0 0.0 . 68 . . Atlas-SNP LPAR3 23566 hgsc.bcm.edu hg19 1 85331068 85331068 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LPAR3 NM_012152 exon2 c.G736T p.G246W ACCTACCTAAGAC . 71.0 4.0 118.0 0.0 . 53 . . Atlas-SNP COL24A1 255631 hgsc.bcm.edu hg19 1 86340972 86340972 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . COL24A1 NM_152890 exon34 c.A3072G p.E1024E ACCTGGTTCACCT . 108.0 5.0 220.0 0.0 . 202 . . Atlas-SNP GBP7 388646 hgsc.bcm.edu hg19 1 89607318 89607318 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GBP7 NM_207398 exon9 c.T1379C p.L460P CTCTGGAGGACCT . 100.0 4.0 148.0 0.0 . 57 . . Atlas-SNP GLMN 11146 hgsc.bcm.edu hg19 1 92712653 92712653 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d GLMN,NS,carcinoma,0,1 GLMN NM_053274 exon18 c.A1634G p.E545G GGGATCTCTTCTC . 24.0 2.0 47.0 0.0 . 37 . . Atlas-SNP CCDC18 343099 hgsc.bcm.edu hg19 1 93677670 93677670 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC18 NM_206886 exon11 c.A1347G p.A449A GCTTGCAATAAAA . 98.0 4.0 142.0 0.0 . 93 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94520858 94520858 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCA4 NM_000350 exon16 c.C2396A p.P799Q GCCACCGGAGACA . 64.0 4.0 69.0 0.0 . 275 . . Atlas-SNP LPPR5 0 hgsc.bcm.edu hg19 1 99418828 99418828 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001037317 exon3 c.G419T p.G140V ACTTGTCCAGCAT . 79.0 4.0 91.0 0.0 . . . . Atlas-SNP PALMD 54873 hgsc.bcm.edu hg19 1 100154877 100154877 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PALMD NM_017734 exon7 c.C1061A p.S354X AAGAATCGAATGT . 91.0 5.0 92.0 0.0 . 64 . . Atlas-SNP ATXN7L2 127002 hgsc.bcm.edu hg19 1 110032963 110032963 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATXN7L2 NM_153340 exon9 c.G1307T p.C436F GGTTCTGCTCAGC . 70.0 4.0 75.0 0.0 . 60 . . Atlas-SNP KCNA10 3744 hgsc.bcm.edu hg19 1 111061042 111061042 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNA10 NM_005549 exon1 c.A368G p.D123G ATGGAGTCAAAGA . 29.0 5.0 42.0 0.0 . 92 . . Atlas-SNP CHI3L2 1117 hgsc.bcm.edu hg19 1 111773369 111773369 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CHI3L2 NM_004000 exon3 c.G76A p.A26T GGATCTGCCTACA . 60.0 4.0 77.0 0.0 . 38 . . Atlas-SNP CHIA 27159 hgsc.bcm.edu hg19 1 111857977 111857977 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CHIA NM_201653 exon6 c.G400T p.G134W TTTGACGGGCTGG . 91.0 4.0 133.0 0.0 . 115 . . Atlas-SNP HIPK1 204851 hgsc.bcm.edu hg19 1 114499248 114499248 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HIPK1 NM_152696 exon6 c.1408-1G>T . TTGGAAGGTGAAT . 60.0 4.0 95.0 0.0 . 195 . . Atlas-SNP ATP1A1 476 hgsc.bcm.edu hg19 1 116942136 116942136 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATP1A1 NM_001160233 exon18 c.G2543T p.R848L ATGAGCGGCTGAT . 92.0 4.0 116.0 0.0 . 87 . . Atlas-SNP VTCN1 79679 hgsc.bcm.edu hg19 1 117690333 117690333 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VTCN1 NM_024626 exon5 c.T796C p.F266L TGGCAAAGAAAGA . 58.0 4.0 94.0 0.0 . 26 . . Atlas-SNP VPS72 6944 hgsc.bcm.edu hg19 1 151150609 151150609 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS72 NM_001271087 exon5 c.G575T p.R192L TCGAGCCGCTCAT . 78.0 4.0 71.0 0.0 . 31 . . Atlas-SNP RORC 6097 hgsc.bcm.edu hg19 1 151779983 151779983 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RORC NM_005060 exon11 c.A1522G p.T508A TTTCAGTGCTGAA . 76.0 4.0 73.0 0.0 . 70 . . Atlas-SNP SPRR2A 6700 hgsc.bcm.edu hg19 1 153029108 153029108 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPRR2A NM_005988 exon2 c.C104A p.P35H GGGCAGGGCTCAG . 183.0 34.0 183.0 0.0 . 9 . . Atlas-SNP DENND4B 9909 hgsc.bcm.edu hg19 1 153903278 153903278 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DENND4B NM_014856 exon26 c.G4170T p.L1390F CAGTGCCAAACTA . 100.0 4.0 49.0 0.0 . 210 . . Atlas-SNP FDPS 2224 hgsc.bcm.edu hg19 1 155289468 155289468 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FDPS NM_001135821 exon9 c.T913C p.F305L GAGTTCTTTCAGA . 88.0 4.0 118.0 0.0 . 41 . . Atlas-SNP CCT3 7203 hgsc.bcm.edu hg19 1 156280946 156280946 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCT3 NM_005998 exon12 c.G1196A p.R399H ACATTGCGACACA . 157.0 23.0 141.0 0.0 . 61 . . Atlas-SNP RRNAD1 51093 hgsc.bcm.edu hg19 1 156703277 156703277 + Nonsense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RRNAD1 NM_015997 exon5 c.C601T p.Q201X CTTCTGCAGGCTC . 75.0 4.0 77.0 0.0 . 39 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158641151 158641151 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPTA1 NM_003126 exon12 c.C1581A p.A527A TTCCTGGGCAGTA . 203.0 9.0 141.0 0.0 . 720 . . Atlas-SNP APCS 325 hgsc.bcm.edu hg19 1 159558025 159558025 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . APCS NM_001639 exon2 c.A199T p.S67C GCCTACAGCCTCT . 179.0 14.0 90.0 0.0 . 48 . . Atlas-SNP CD84 8832 hgsc.bcm.edu hg19 1 160519720 160519720 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CD84_ENST00000311224,NS,carcinoma,0,2 CD84 NM_001184879 exon7 c.A959G p.Q320R GCAAACTGCACTT . 69.0 3.0 90.0 0.0 . 71 . . Atlas-SNP CD48 962 hgsc.bcm.edu hg19 1 160648872 160648872 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD48 NM_001778 exon4 c.G702A p.V234V GGTGGGCACCGTG . 136.0 44.0 134.0 0.0 . 31 . . Atlas-SNP PPOX 5498 hgsc.bcm.edu hg19 1 161138329 161138329 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PPOX NM_000309 exon6 c.C579A p.T193T GCAAACCCATCGT . 94.0 4.0 106.0 0.0 . 34 . . Atlas-SNP DDR2 4921 hgsc.bcm.edu hg19 1 162743270 162743270 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DDR2 NM_001014796 exon15 c.T1740C p.C580C TCTCTGTGAAGTG . 117.0 5.0 112.0 0.0 . 228 . . Atlas-SNP ALDH9A1 223 hgsc.bcm.edu hg19 1 165664622 165664622 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ALDH9A1 NM_000696 exon2 c.C194A p.A65D AAAGTAGCTATCA . 96.0 4.0 98.0 0.0 . 75 . . Atlas-SNP DPT 1805 hgsc.bcm.edu hg19 1 168670334 168670334 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DPT NM_001937 exon3 c.G460T p.G154C CCTCACCATAGTG . 94.0 5.0 98.0 0.0 . 29 . . Atlas-SNP C1orf112 55732 hgsc.bcm.edu hg19 1 169806089 169806089 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d .,1 C1orf112 NM_018186 exon17 c.T1561C p.S521P AAATTTTCCCCAA . 36.0 2.0 34.0 0.0 . 74 . . Atlas-SNP FMO3 2328 hgsc.bcm.edu hg19 1 171076816 171076816 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FMO3 NM_006894 exon4 c.A322G p.T108A TCTTAGACATTTG . 143.0 6.0 156.0 0.0 . 73 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181684513 181684513 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CACNA1E NM_001205293 exon9 c.C1211T p.T404I CTGGAACATCCGC . 96.0 5.0 67.0 0.0 . 778 . . Atlas-SNP LAMC1 3915 hgsc.bcm.edu hg19 1 183086467 183086467 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LAMC1 NM_002293 exon9 c.G1577T p.W526L ATGGGTGGCGTGC . 87.0 5.0 93.0 0.0 . 176 . . Atlas-SNP CAMSAP2 23271 hgsc.bcm.edu hg19 1 200708967 200708967 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_203459 exon1 c.T12C p.A4A GGATGCTGCAGAC . 184.0 8.0 175.0 0.0 . . . . Atlas-SNP CAMSAP2 23271 hgsc.bcm.edu hg19 1 200817629 200817629 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_203459 exon11 c.T1732C p.L578L AGTATCTTAAATT . 100.0 4.0 103.0 0.0 . . . . Atlas-SNP DYRK3 8444 hgsc.bcm.edu hg19 1 206822049 206822049 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DYRK3 NM_003582 exon3 c.T1506C p.C502C AAGGTGTCTTCAC . 111.0 5.0 138.0 0.0 . 146 . . Atlas-SNP C1orf116 79098 hgsc.bcm.edu hg19 1 207195943 207195943 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d C1orf116,NS,carcinoma,0,1 C1orf116 NM_023938 exon4 c.G1166T p.G389V GCCAGACCTGGAG . 40.0 2.0 49.0 0.0 . 64 . . Atlas-SNP IRF6 3664 hgsc.bcm.edu hg19 1 209974642 209974642 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IRF6 NM_006147 exon3 c.C117T p.P39P TTTCCAGGGAATC . 79.0 4.0 101.0 0.0 . 65 . . Atlas-SNP RPS6KC1 26750 hgsc.bcm.edu hg19 1 213349823 213349823 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RPS6KC1 NM_012424 exon8 c.G1032T p.G344G CCTTGGGGTGATT . 123.0 5.0 111.0 0.0 . 114 . . Atlas-SNP HHIPL2 79802 hgsc.bcm.edu hg19 1 222717113 222717113 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HHIPL2 NM_024746 exon2 c.A740G p.D247G CTCCCATCAGGGA . 87.0 4.0 101.0 0.0 . 122 . . Atlas-SNP NVL 4931 hgsc.bcm.edu hg19 1 224475675 224475675 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NVL NM_002533 exon14 c.G1596T p.L532L CAACCCCAGCAGC . 70.0 4.0 66.0 0.0 . 74 . . Atlas-SNP DNAH14 127602 hgsc.bcm.edu hg19 1 225440023 225440023 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DNAH14 NM_001373 exon44 c.G6751A p.E2251K ACTGGTGAATGTT . 460.0 209.0 485.0 2.0 . 300 . . Atlas-SNP EPHX1 2052 hgsc.bcm.edu hg19 1 226027000 226027000 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EPHX1 NM_001136018 exon5 c.G675T p.G225G AGGAGGGGACTGG . 133.0 6.0 151.0 0.0 . 57 . . Atlas-SNP CNST 163882 hgsc.bcm.edu hg19 1 246784775 246784775 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CNST NM_152609 exon3 c.C424T p.L142L AAAGTACTAAGCG . 92.0 4.0 68.0 0.0 . 73 . . Atlas-SNP OR6F1 343169 hgsc.bcm.edu hg19 1 247875382 247875382 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR6F1 NM_001005286 exon1 c.C676A p.L226I TCCTGAGGATGGT . 97.0 4.0 95.0 0.0 . 88 . . Atlas-SNP KIDINS220 57498 hgsc.bcm.edu hg19 2 8919191 8919191 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIDINS220 NM_020738 exon19 c.C2449A p.Q817K GGTTCTGGTTAAT . 81.0 4.0 137.0 0.0 . 136 . . Atlas-SNP WDR35 57539 hgsc.bcm.edu hg19 2 20133274 20133274 + Splice_Site SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDR35 NM_020779 exon23 c.2548-2A>G . ATTTCCTGTACAA . 91.0 4.0 63.0 0.0 . 92 . . Atlas-SNP C2orf44 80304 hgsc.bcm.edu hg19 2 24261602 24261602 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C2orf44 NM_025203 exon2 c.G763T p.G255C CTTCACCAATAAC . 112.0 5.0 121.0 0.0 . 56 . . Atlas-SNP HADHA 3030 hgsc.bcm.edu hg19 2 26453120 26453120 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HADHA NM_000182 exon7 c.A616G p.S206G GAATGCTTCTACC . 82.0 4.0 108.0 0.0 . 87 . . Atlas-SNP CCDC164 92749 hgsc.bcm.edu hg19 2 26624926 26624926 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC164 NM_145038 exon1 c.C69T p.L23L GATTCTCGCGCCC . 64.0 4.0 122.0 0.0 . 84 . . Atlas-SNP TMEM214 54867 hgsc.bcm.edu hg19 2 27258128 27258128 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMEM214 NM_017727 exon3 c.A477G p.E159E AAGTGAACCCACG . 96.0 4.0 150.0 0.0 . 41 . . Atlas-SNP CAD 790 hgsc.bcm.edu hg19 2 27465209 27465209 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CAD NM_004341 exon40 c.G6136T p.G2046W AATGCTGGGGATG . 60.0 4.0 91.0 0.0 . 199 . . Atlas-SNP GTF3C2 2976 hgsc.bcm.edu hg19 2 27551011 27551011 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GTF3C2 NM_001521 exon18 c.C2302T p.P768S CTGGACCTTCAGG . 100.0 4.0 98.0 0.0 . 73 . . Atlas-SNP SNX17 9784 hgsc.bcm.edu hg19 2 27597622 27597622 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SNX17 NM_014748 exon8 c.T678C p.A226A TTATGCTCAGGTG . 89.0 4.0 110.0 0.0 . 40 . . Atlas-SNP IFT172 26160 hgsc.bcm.edu hg19 2 27679376 27679376 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IFT172 NM_015662 exon31 c.3371+2T>C . GGCCTCACCAATT . 106.0 5.0 120.0 0.0 . 119 . . Atlas-SNP IFT172 26160 hgsc.bcm.edu hg19 2 27703934 27703934 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IFT172 NM_015662 exon8 c.T764C p.V255A AGCACAACAGACT . 83.0 4.0 117.0 0.0 . 119 . . Atlas-SNP GPN1 11321 hgsc.bcm.edu hg19 2 27852779 27852779 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPN1 NM_007266 exon2 c.G207T p.L69L CAACCTGGATCCA . 121.0 5.0 148.0 0.0 . 28 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32678911 32678911 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BIRC6 NM_016252 exon23 c.G4654T p.G1552C GCTGAGGGTAGTT . 152.0 8.0 176.0 0.0 . 838 . . Atlas-SNP LTBP1 4052 hgsc.bcm.edu hg19 2 33526595 33526595 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LTBP1 NM_206943 exon22 c.A3365G p.D1122G ACATTGATGAATG . 94.0 4.0 118.0 0.0 . 317 . . Atlas-SNP RMDN2 151393 hgsc.bcm.edu hg19 2 38178622 38178622 + Silent SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_144713 exon2 c.T264A p.A88A AAATGCTTCCCCT . 54.0 4.0 76.0 0.0 . . . . Atlas-SNP EPAS1 2034 hgsc.bcm.edu hg19 2 46605102 46605102 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EPAS1 NM_001430 exon10 c.C1319A p.T440K GGGCCACGGAGTT . 100.0 4.0 141.0 0.0 . 83 . . Atlas-SNP MSH2 4436 hgsc.bcm.edu hg19 2 47703706 47703706 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d MSH2,NS,carcinoma,0,1 MSH2 NM_000251 exon13 c.C2206A p.L736I TCTATCCTCAGGT . 42.0 2.0 64.0 0.0 . 198 . . Atlas-SNP FAM161A 84140 hgsc.bcm.edu hg19 2 62067708 62067708 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAM161A NM_032180 exon3 c.C431T p.S144L TTTTCTGATACAG . 159.0 76.0 200.0 0.0 . 200 . . Atlas-SNP EHBP1 23301 hgsc.bcm.edu hg19 2 62998523 62998523 + Missense_Mutation SNP A A C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EHBP1 NM_001142616 exon5 c.A308C p.E103A TCATAGAAAATGT . 145.0 26.0 152.0 0.0 . 127 . . Atlas-SNP PLEK 5341 hgsc.bcm.edu hg19 2 68607861 68607861 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLEK NM_002664 exon3 c.T205C p.F69L TTTGTGTTTAAGA . 95.0 5.0 111.0 0.0 . 64 . . Atlas-SNP SFXN5 94097 hgsc.bcm.edu hg19 2 73247367 73247367 + Splice_Site SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SFXN5 NM_144579 exon7 c.357+1G>A . CACTTACAATTGG . 89.0 4.0 126.0 0.0 . 31 . . Atlas-SNP FBXO41 150726 hgsc.bcm.edu hg19 2 73496418 73496418 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FBXO41 NM_001080410 exon1 c.C341T p.P114L GCGAGGGGAGCGT . 60.0 4.0 129.0 0.0 . 82 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84822786 84822786 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DNAH6 NM_001370 exon18 c.T2741C p.L914P ATTGCCTGGATCC . 93.0 4.0 54.0 0.0 . 194 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84955003 84955003 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DNAH6 NM_001370 exon61 c.C10183A p.R3395R TTTCTCCGAGGTT . 91.0 4.0 103.0 0.0 . 194 . . Atlas-SNP GNLY 10578 hgsc.bcm.edu hg19 2 85922521 85922521 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GNLY NM_006433 exon2 c.C131T p.P44L CCTGCCCGTGCCT . 84.0 4.0 78.0 0.0 . 29 . . Atlas-SNP MRPS5 64969 hgsc.bcm.edu hg19 2 95756225 95756225 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MRPS5 NM_031902 exon11 c.G974A p.R325Q ATGAGCCGGCAGA . 87.0 24.0 122.0 0.0 . 52 . . Atlas-SNP FAHD2A 51011 hgsc.bcm.edu hg19 2 96078508 96078508 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAHD2A NM_016044 exon7 c.T878C p.L293P TCTTTCTCAAGGT . 98.0 4.0 105.0 0.0 . 25 . . Atlas-SNP KANSL3 55683 hgsc.bcm.edu hg19 2 97302719 97302719 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001115016 exon2 c.A154G p.S52G CACTACTGGCATC . 101.0 5.0 161.0 0.0 . . . . Atlas-SNP ZAP70 7535 hgsc.bcm.edu hg19 2 98349776 98349776 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZAP70 NM_001079 exon7 c.A807G p.T269T TCCCACACTCCCA . 124.0 6.0 191.0 0.0 . 77 . . Atlas-SNP LYG2 254773 hgsc.bcm.edu hg19 2 99870712 99870712 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LYG2 NM_175735 exon2 c.C12A p.S4S CACCACGGAGGAT . 57.0 5.0 73.0 0.0 . 26 . . Atlas-SNP AFF3 3899 hgsc.bcm.edu hg19 2 100185316 100185316 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d AFF3,NS,carcinoma,0,1 AFF3 NM_001025108 exon18 c.A3055G p.M1019V TCACCATTGCATC . 121.0 6.0 125.0 0.0 . 164 . . Atlas-SNP RFX8 731220 hgsc.bcm.edu hg19 2 102031354 102031354 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RFX8 NM_001145664 exon7 c.A523G p.R175G TTAGTCTTTTGAC . 76.0 4.0 115.0 0.0 . 16 . . Atlas-SNP IL1R1 3554 hgsc.bcm.edu hg19 2 102791944 102791944 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IL1R1 NM_000877 exon10 c.A1142G p.D381G CTTCAGATGGAAA . 557.0 109.0 555.0 0.0 . 52 . . Atlas-SNP NCK2 8440 hgsc.bcm.edu hg19 2 106498261 106498261 + Nonsense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NCK2 NM_001004720 exon3 c.G704A p.W235X AGTGGTGGAAATG . 91.0 5.0 118.0 0.0 . 75 . . Atlas-SNP TFCP2L1 29842 hgsc.bcm.edu hg19 2 121991665 121991665 + Splice_Site SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TFCP2L1 NM_014553 exon13 c.1198+2T>A . CAACTCACCAGAC . 56.0 4.0 61.0 0.0 . 54 . . Atlas-SNP PROC 5624 hgsc.bcm.edu hg19 2 128186178 128186178 + Silent SNP C C A rs121918141 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PROC NM_000312 exon9 c.C1042A p.R348R AGCAGCCGAGAGA . 67.0 4.0 131.0 0.0 . 31 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141773444 141773444 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP1B NM_018557 exon13 c.G2011T p.D671Y CGCTGTCATCTAT . 238.0 72.0 322.0 0.0 . 1315 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141777526 141777526 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP1B NM_018557 exon12 c.T1935C p.S645S GGGATGAGACATT . 84.0 5.0 100.0 0.0 . 1315 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168107554 168107554 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . XIRP2 NM_152381 exon9 c.C9652T p.P3218S ATGTCTCCTGCAA . 101.0 5.0 140.0 0.0 . 914 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170044602 170044602 + Missense_Mutation SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP2 NM_004525 exon49 c.A9206T p.H3069L GGGGTGTGGCACA . 196.0 49.0 318.0 0.0 . 751 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179577619 179577619 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TTN NM_001267550 exon94 c.A27133G p.T9045A GAGGTGTTCCTTT . 84.0 4.0 59.0 0.0 . 18412 . . Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197172805 197172805 + Nonsense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HECW2 NM_020760 exon11 c.G2439A p.W813X TGCCTCCCAGTCT . 89.0 4.0 68.0 0.0 . 239 . . Atlas-SNP PARD3B 117583 hgsc.bcm.edu hg19 2 205912377 205912377 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PARD3B NM_205863 exon4 c.A468G p.S156S CGCTTCACACCCT . 75.0 4.0 130.0 0.0 . 314 . . Atlas-SNP GPR1 2825 hgsc.bcm.edu hg19 2 207041152 207041152 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPR1 NM_001098199 exon3 c.C820A p.H274N TATTGTGGTGAAT . 83.0 4.0 127.0 0.0 . 38 . . Atlas-SNP SMARCAL1 50485 hgsc.bcm.edu hg19 2 217303199 217303199 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SMARCAL1,colon,carcinoma,0,1 SMARCAL1 NM_014140 exon10 c.G1701T p.P567P TATGCCGGTCCTA . 40.0 2.0 56.0 0.0 . 93 . . Atlas-SNP GPBAR1 151306 hgsc.bcm.edu hg19 2 219127770 219127770 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPBAR1 NM_170699 exon2 c.G323T p.G108V TGCACGGGGAGCG . 122.0 21.0 109.0 0.0 . 22 . . Atlas-SNP C2orf62 375307 hgsc.bcm.edu hg19 2 219222293 219222293 + Missense_Mutation SNP C C T rs369378162 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C2orf62 NM_198559 exon3 c.C155T p.T52M CTGAGACGCTGGC . 109.0 13.0 111.0 0.0 . 28 . . Atlas-SNP CRYBA2 1412 hgsc.bcm.edu hg19 2 219856962 219856962 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CRYBA2 NM_057094 exon3 c.G165T p.W55C GGCCACCCAACTG . 84.0 4.0 87.0 0.0 . 13 . . Atlas-SNP ATG9A 79065 hgsc.bcm.edu hg19 2 220089453 220089453 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATG9A NM_001077198 exon8 c.C640A p.R214S GGAAACGGAGGAT . 98.0 4.0 165.0 0.0 . 50 . . Atlas-SNP GMPPA 29926 hgsc.bcm.edu hg19 2 220366718 220366718 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GMPPA NM_205847 exon5 c.C388T p.H130Y GAAGCCCACCGAC . 65.0 6.0 115.0 0.0 . 50 . . Atlas-SNP OBSL1 23363 hgsc.bcm.edu hg19 2 220422083 220422083 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OBSL1 NM_001173431 exon12 c.T4048C p.F1350L CAAGGAAGATGCG . 38.0 4.0 54.0 0.0 . 120 . . Atlas-SNP PAX3 5077 hgsc.bcm.edu hg19 2 223066865 223066865 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PAX3 NM_181457 exon8 c.C1218A p.P406P AGTCTGGGGCTGA . 81.0 4.0 115.0 0.0 . 106 . . Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225376256 225376256 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CUL3 NM_001257198 exon6 c.A716G p.Y239C TTTATATATACTG . 118.0 5.0 110.0 0.0 . 96 . . Atlas-SNP DOCK10 55619 hgsc.bcm.edu hg19 2 225751231 225751231 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DOCK10 NM_014689 exon5 c.A434G p.E145G AGCTTCTCTGGTT . 73.0 4.0 95.0 0.0 . 308 . . Atlas-SNP DOCK10 55619 hgsc.bcm.edu hg19 2 225796364 225796364 + Nonsense_Mutation SNP C C A rs186136248 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DOCK10 NM_014689 exon2 c.G145T p.E49X AAGGCTCGAGAAG . 50.0 4.0 81.0 0.0 . 308 . C|0.999;T|0.001 Atlas-SNP NYAP2 57624 hgsc.bcm.edu hg19 2 226378371 226378371 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_020864 exon3 c.C506T p.T169I GGAAAACCCCTGA . 67.0 14.0 86.0 0.0 . . . . Atlas-SNP NYAP2 57624 hgsc.bcm.edu hg19 2 226447056 226447056 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_020864 exon4 c.A923G p.K308R TCGCCAAGGCCTC . 117.0 27.0 114.0 0.0 . . . . Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230643664 230643664 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRIP12 NM_004238 exon34 c.G4912A p.V1638I GAGATACAAGCGC . 82.0 4.0 106.0 0.0 . 207 . . Atlas-SNP DIS3L2 129563 hgsc.bcm.edu hg19 2 232880358 232880358 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DIS3L2 NM_001257282 exon3 c.T187C p.L63L GAAGGCTTGAAGA . 102.0 5.0 128.0 0.0 . 77 . . Atlas-SNP AGXT 189 hgsc.bcm.edu hg19 2 241813425 241813425 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AGXT NM_000030 exon6 c.A626G p.K209R CCCAGAAGGCCCT . 52.0 4.0 74.0 0.0 . 50 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4730230 4730230 + Nonsense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ITPR1 NM_001099952 exon31 c.C3727T p.Q1243X TTTTTGCAGAATT . 97.0 4.0 139.0 0.0 . 659 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4735176 4735176 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ITPR1 NM_001099952 exon33 c.G4005T p.L1335L GTAGCTGGTCAAT . 98.0 4.0 122.0 0.0 . 659 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4747895 4747895 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ITPR1 NM_001099952 exon37 c.G4675A p.V1559I AGCCAAGTCAACA . 86.0 4.0 135.0 0.0 . 659 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4774886 4774886 + Missense_Mutation SNP G G T rs369108656 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ITPR1 NM_001168272 exon42 c.G5290T p.G1764C GGACCCGGCAAGC . 52.0 4.0 59.0 0.0 . 659 . . Atlas-SNP HRH1 3269 hgsc.bcm.edu hg19 3 11302057 11302057 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d HRH1,NS,carcinoma,0,1 HRH1 NM_000861 exon3 c.G1334T p.C445F ACTGTTGCAATGA . 54.0 3.0 70.0 0.0 . 58 . . Atlas-SNP NUP210 23225 hgsc.bcm.edu hg19 3 13413453 13413453 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NUP210 NM_024923 exon13 c.C1667T p.P556L CTCAGGGGCAGCT . 94.0 5.0 130.0 0.0 . 182 . . Atlas-SNP NUP210 23225 hgsc.bcm.edu hg19 3 13429809 13429809 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d NUP210,NS,carcinoma,0,1 NUP210 NM_024923 exon5 c.C678A p.V226V CTTGTAGACAGCC . 44.0 2.0 77.0 0.0 . 182 . . Atlas-SNP WNT7A 7476 hgsc.bcm.edu hg19 3 13860913 13860913 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WNT7A NM_004625 exon4 c.A578G p.E193G TTCTCCTCCAGGA . 59.0 4.0 62.0 0.0 . 70 . . Atlas-SNP SLC6A6 6533 hgsc.bcm.edu hg19 3 14526411 14526411 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC6A6 NM_003043 exon15 c.C1759T p.R587C CCCAACCGCTGGG . 68.0 4.0 117.0 0.0 . 58 . . Atlas-SNP FGD5 152273 hgsc.bcm.edu hg19 3 14958766 14958766 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FGD5 NM_152536 exon12 c.T3416C p.V1139A ACGATGTGCTCCT . 84.0 4.0 121.0 0.0 . 248 . . Atlas-SNP TBC1D5 9779 hgsc.bcm.edu hg19 3 17333464 17333464 + Missense_Mutation SNP C C A rs143029277 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TBC1D5 NM_014744 exon15 c.G1168T p.G390C GAAGGCCGAGACA . 72.0 4.0 103.0 0.0 . 69 . C|1.000;T|0.000 Atlas-SNP SATB1 6304 hgsc.bcm.edu hg19 3 18393620 18393620 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SATB1 NM_002971 exon10 c.A1643G p.N548S GAGAGGTTCTCCC . 146.0 6.0 220.0 0.0 . 96 . . Atlas-SNP KAT2B 8850 hgsc.bcm.edu hg19 3 20153102 20153102 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KAT2B NM_003884 exon6 c.G866A p.C289Y GTTACTGCAACGT . 73.0 4.0 86.0 0.0 . 73 . . Atlas-SNP NGLY1 55768 hgsc.bcm.edu hg19 3 25778936 25778936 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NGLY1 NM_018297 exon6 c.C892A p.P298T TCTCAGGGTTATT . 45.0 4.0 52.0 0.0 . 57 . . Atlas-SNP AZI2 64343 hgsc.bcm.edu hg19 3 28368437 28368437 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AZI2 NM_022461 exon7 c.A652G p.N218D GCATATTATCACT . 92.0 4.0 105.0 0.0 . 33 . . Atlas-SNP LRRFIP2 9209 hgsc.bcm.edu hg19 3 37107332 37107332 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRRFIP2 NM_006309 exon24 c.G1668T p.Q556H CAAGACCTGAGCA . 137.0 6.0 167.0 0.0 . 71 . . Atlas-SNP VILL 50853 hgsc.bcm.edu hg19 3 38044030 38044030 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VILL NM_015873 exon13 c.G1623T p.L541L CTTGCTGGTCACA . 119.0 7.0 87.0 0.0 . 61 . . Atlas-SNP CSRNP1 64651 hgsc.bcm.edu hg19 3 39184971 39184971 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CSRNP1 NM_033027 exon5 c.T1345C p.F449L ATGTGAAGCTACA . 88.0 5.0 124.0 0.0 . 59 . . Atlas-SNP CSRNP1 64651 hgsc.bcm.edu hg19 3 39185786 39185786 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CSRNP1 NM_033027 exon4 c.C622A p.R208R GAGCTCGACGTCG . 90.0 6.0 146.0 0.0 . 59 . . Atlas-SNP XIRP1 165904 hgsc.bcm.edu hg19 3 39229162 39229162 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . XIRP1 NM_001198621 exon2 c.A1775G p.Q592R ATGGTCTGCACAT . 134.0 8.0 189.0 0.0 . 173 . . Atlas-SNP ZNF620 253639 hgsc.bcm.edu hg19 3 40558019 40558019 + Nonsense_Mutation SNP G G T rs377575762 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZNF620,NS,carcinoma,0,1 ZNF620 NM_175888 exon5 c.G934T p.E312X TGTAACGAATGTT . 40.0 2.0 27.0 0.0 . 38 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41275034 41275034 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CTNNB1 NM_001098209 exon9 c.T1200C p.G400G GGAAGGTCTCCTT . 97.0 5.0 107.0 0.0 . 4904 . . Atlas-SNP TRAK1 22906 hgsc.bcm.edu hg19 3 42244317 42244317 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRAK1 NM_001265610 exon12 c.A1595G p.K532R TGCGGAAGGCGGG . 66.0 4.0 107.0 0.0 . 188 . . Atlas-SNP CCDC13 152206 hgsc.bcm.edu hg19 3 42754719 42754719 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC13 NM_144719 exon14 c.A1808G p.E603G ATCTTCTCCAGAT . 80.0 5.0 122.0 0.0 . 71 . . Atlas-SNP ANO10 55129 hgsc.bcm.edu hg19 3 43621859 43621859 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ANO10,NS,carcinoma,0,1 ANO10 NM_018075 exon5 c.A578G p.K193R TGATACTTCAAAG . 30.0 4.0 38.0 0.0 . 70 . . Atlas-SNP CCR9 10803 hgsc.bcm.edu hg19 3 45942794 45942794 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CCR9,NS,carcinoma,0,1 CCR9 NM_031200 exon3 c.A514G p.I172V TTTACCATCTGGG . 72.0 20.0 106.0 0.0 . 45 . . Atlas-SNP NBEAL2 23218 hgsc.bcm.edu hg19 3 47046023 47046023 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NBEAL2 NM_015175 exon38 c.G6237T p.L2079F GTACTTGATGCAA . 74.0 4.0 139.0 0.0 . 267 . . Atlas-SNP PLXNB1 5364 hgsc.bcm.edu hg19 3 48465517 48465517 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLXNB1 NM_001130082 exon3 c.G504A p.V168V TCGCCCCACAAAC . 88.0 4.0 91.0 0.0 . 150 . . Atlas-SNP SLC26A6 65010 hgsc.bcm.edu hg19 3 48669737 48669737 + Nonsense_Mutation SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC26A6 NM_022911 exon5 c.A526T p.R176X CATCTCTGGCTGT . 262.0 109.0 340.0 0.0 . 45 . . Atlas-SNP WDR6 11180 hgsc.bcm.edu hg19 3 49049708 49049708 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDR6 NM_018031 exon2 c.G831T p.R277R GGGTCGGGTGCAG . 117.0 5.0 147.0 0.0 . 79 . . Atlas-SNP WDR6 11180 hgsc.bcm.edu hg19 3 49051271 49051271 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDR6 NM_018031 exon2 c.A2394G p.T798T ACTCACAGCTGTT . 84.0 4.0 99.0 0.0 . 79 . . Atlas-SNP CCDC36 339834 hgsc.bcm.edu hg19 3 49293752 49293752 + Silent SNP G G T rs143925037 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CCDC36_ENST00000438782,NS,carcinoma,0,2 CCDC36 NM_001135197 exon8 c.G822T p.S274S GACGTCGCCACCT . 47.0 2.0 42.0 0.0 . 77 . G|1.000;A|0.000 Atlas-SNP FAM212A 389119 hgsc.bcm.edu hg19 3 49841899 49841899 + Nonsense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_203370 exon2 c.C343T p.Q115X GTATCCCAGCGCC . 83.0 4.0 124.0 0.0 . . . . Atlas-SNP CYB561D2 11068 hgsc.bcm.edu hg19 3 50390719 50390719 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CYB561D2 NM_007022 exon4 c.T213C p.S71S TGAGAGTTCGCTG . 91.0 4.0 86.0 0.0 . 13 . . Atlas-SNP DOCK3 1795 hgsc.bcm.edu hg19 3 51376393 51376393 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DOCK3 NM_004947 exon37 c.G3700A p.E1234K AACAAGGAAGAAA . 98.0 4.0 108.0 0.0 . 397 . . Atlas-SNP VPRBP 9730 hgsc.bcm.edu hg19 3 51505002 51505002 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPRBP NM_014703 exon4 c.A130G p.K44E TTTCTTTTTCAAT . 99.0 4.0 119.0 0.0 . 107 . . Atlas-SNP GLT8D1 55830 hgsc.bcm.edu hg19 3 52730329 52730329 + Silent SNP G G T rs371584519 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GLT8D1 NM_152932 exon6 c.C453A p.T151T TGCAAAGGTTAAC . 90.0 4.0 128.0 0.0 . 28 . . Atlas-SNP TMEM110-MUSTN1 100526772 hgsc.bcm.edu hg19 3 52874604 52874604 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001198974 exon8 c.A791G p.E264G TCCATCTCATCAT . 55.0 4.0 66.0 0.0 . . . . Atlas-SNP TKT 7086 hgsc.bcm.edu hg19 3 53289863 53289863 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TKT NM_001258028 exon1 c.G96A p.A32A GCCCGCCGCAGTG . 80.0 4.0 148.0 0.0 . 38 . . Atlas-SNP CACNA1D 776 hgsc.bcm.edu hg19 3 53815596 53815596 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CACNA1D NM_000720 exon40 c.A4754G p.N1585S CAGGGAACCTGGA . 117.0 5.0 176.0 0.0 . 324 . . Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77617564 77617564 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ROBO2 NM_002942 exon13 c.C1950A p.T650T TCCCACCACGGTT . 95.0 4.0 108.0 0.0 . 527 . . Atlas-SNP STX19 415117 hgsc.bcm.edu hg19 3 93733245 93733245 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STX19 NM_001001850 exon2 c.G869A p.C290Y CTACAGCATGGAC . 84.0 5.0 99.0 0.0 . 19 . . Atlas-SNP DHFRL1 200895 hgsc.bcm.edu hg19 3 93779792 93779792 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DHFRL1 NM_001195643 exon2 c.A564G p.X188X TTCATATTAATCA . 125.0 5.0 122.0 0.0 . 25 . . Atlas-SNP TRMT10C 54931 hgsc.bcm.edu hg19 3 101284095 101284095 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_017819 exon2 c.G470T p.R157M CAGCAAGGGAAGA . 50.0 4.0 69.0 0.0 . . . . Atlas-SNP PLCXD2 257068 hgsc.bcm.edu hg19 3 111432801 111432801 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLCXD2 NM_001185106 exon3 c.C692A p.P231Q AGATTCCAGCGCC . 52.0 4.0 98.0 0.0 . 36 . . Atlas-SNP BOC 91653 hgsc.bcm.edu hg19 3 112987288 112987288 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BOC NM_033254 exon5 c.C519T p.S173S GGCCTCCAGAGGT . 68.0 16.0 65.0 0.0 . 139 . . Atlas-SNP KIAA1407 57577 hgsc.bcm.edu hg19 3 113737567 113737567 + Missense_Mutation SNP C C A rs76418892 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA1407 NM_020817 exon8 c.G1121T p.R374L GTCTCCCGCTCCA . 81.0 4.0 93.0 0.0 . 80 . C|0.991;T|0.009 Atlas-SNP QTRTD1 79691 hgsc.bcm.edu hg19 3 113789666 113789666 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . QTRTD1 NM_001256835 exon5 c.G563T p.R188L GTCTGCGGCTGCA . 93.0 4.0 57.0 0.0 . 29 . . Atlas-SNP POPDC2 64091 hgsc.bcm.edu hg19 3 119378819 119378819 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . POPDC2 NM_022135 exon1 c.A452G p.E151G GGTGTCTCACCCT . 76.0 5.0 96.0 0.0 . 36 . . Atlas-SNP PARP14 54625 hgsc.bcm.edu hg19 3 122419215 122419215 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PARP14 NM_017554 exon6 c.A1814G p.N605S TTGAGAACAAAGA . 79.0 4.0 92.0 0.0 . 242 . . Atlas-SNP CCDC14 64770 hgsc.bcm.edu hg19 3 123634090 123634090 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC14 NM_022757 exon12 c.C2275A p.Q759K GTGGCTGAGGGGA . 76.0 4.0 109.0 0.0 . 97 . . Atlas-SNP HEG1 57493 hgsc.bcm.edu hg19 3 124732817 124732817 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d HEG1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 HEG1 NM_020733 exon6 c.G1606T p.G536C CTTGACCGTAGCT . 46.0 3.0 44.0 1.0 . 109 . . Atlas-SNP IFT122 55764 hgsc.bcm.edu hg19 3 129238004 129238004 + Missense_Mutation SNP C C A rs373326394 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IFT122 NM_052985 exon29 c.C3599A p.P1200Q AGGACCCGTTCAC . 93.0 5.0 145.0 0.0 . 117 . . Atlas-SNP PLXND1 23129 hgsc.bcm.edu hg19 3 129279245 129279245 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLXND1 NM_015103 exon31 c.G5061C p.K1687N AGACTTCTTGGGC . 117.0 5.0 197.0 0.0 . 149 . . Atlas-SNP DNAJC13 23317 hgsc.bcm.edu hg19 3 132193831 132193831 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DNAJC13 NM_015268 exon22 c.G2347T p.E783X CGAGAAGAACTGA . 86.0 4.0 102.0 0.0 . 253 . . Atlas-SNP CEP63 80254 hgsc.bcm.edu hg19 3 134264444 134264444 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CEP63 NM_001042383 exon7 c.G572T p.R191L TCAATCGGAAACA . 78.0 4.0 105.0 0.0 . 56 . . Atlas-SNP CLSTN2 64084 hgsc.bcm.edu hg19 3 140251313 140251313 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CLSTN2 NM_022131 exon9 c.G1492T p.G498C ACAGTCGGCGCTT . 91.0 5.0 122.0 0.0 . 190 . . Atlas-SNP EIF2A 83939 hgsc.bcm.edu hg19 3 150285799 150285799 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EIF2A NM_032025 exon8 c.G660A p.K220K CTTTAAGGCAGAT . 61.0 19.0 61.0 0.0 . 59 . . Atlas-SNP ARHGEF26 26084 hgsc.bcm.edu hg19 3 153840716 153840716 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARHGEF26 NM_001251962 exon2 c.T935C p.L312S GAGGCTTGCGGTC . 95.0 4.0 160.0 0.0 . 158 . . Atlas-SNP GPR149 344758 hgsc.bcm.edu hg19 3 154145382 154145382 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d GPR149,NS,carcinoma,0,1 GPR149 NM_001038705 exon2 c.G1097A p.R366H GTCCAGCGTTTGG . 71.0 3.0 116.0 0.0 . 134 . . Atlas-SNP KCNAB1 7881 hgsc.bcm.edu hg19 3 155838515 155838515 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNAB1 NM_172160 exon1 c.T115C p.S39P AAAGCCTCAGAAA . 137.0 6.0 197.0 0.0 . 176 . . Atlas-SNP TRIM59 286827 hgsc.bcm.edu hg19 3 160155954 160155954 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRIM59 NM_173084 exon3 c.G1018C p.V340L GTATTACTGAAAT . 271.0 85.0 299.0 0.0 . 42 . . Atlas-SNP SPATA16 83893 hgsc.bcm.edu hg19 3 172835323 172835323 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPATA16 NM_031955 exon2 c.A199G p.K67E TGCCCTTTGTCAT . 1219.0 190.0 696.0 0.0 . 111 . . Atlas-SNP YEATS2 55689 hgsc.bcm.edu hg19 3 183521785 183521785 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . YEATS2 NM_018023 exon27 c.C3593A p.A1198E AAAGAGCAATGAC . 111.0 5.0 129.0 0.0 . 111 . . Atlas-SNP EIF4G1 1981 hgsc.bcm.edu hg19 3 184049840 184049840 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EIF4G1 NM_001194946 exon33 c.C4605A p.L1535L CGCCCTCCAGGCC . 78.0 4.0 86.0 0.0 . 151 . . Atlas-SNP SENP2 59343 hgsc.bcm.edu hg19 3 185316214 185316214 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SENP2 NM_021627 exon3 c.C172A p.Q58K ATTCACCAAGTGA . 175.0 7.0 186.0 0.0 . 88 . . Atlas-SNP LPP 4026 hgsc.bcm.edu hg19 3 188327323 188327323 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LPP NM_005578 exon6 c.G804T p.R268R AACACGGGGAGGC . 89.0 4.0 119.0 0.0 . 72 . . Atlas-SNP LPP 4026 hgsc.bcm.edu hg19 3 188592145 188592145 + Missense_Mutation SNP G G T rs9830664 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LPP NM_005578 exon11 c.G1717T p.G573C GATTGCGGTGGTC . 79.0 4.0 67.0 0.0 . 72 . G|0.998;A|0.002 Atlas-SNP CPN2 1370 hgsc.bcm.edu hg19 3 194062557 194062557 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CPN2 NM_001080513 exon2 c.T875C p.V292A AGGCCAACCAGGC . 97.0 4.0 146.0 0.0 . 56 . . Atlas-SNP SLC51A 200931 hgsc.bcm.edu hg19 3 195944788 195944788 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_152672 exon2 c.A114G p.T38T TCCCACAGCAGCC . 43.0 5.0 85.0 0.0 . . . . Atlas-SNP MFSD7 84179 hgsc.bcm.edu hg19 4 678289 678289 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MFSD7 NM_032219 exon6 c.G823A p.A275T CGCTTGCACAGAG . 79.0 4.0 125.0 0.0 . 50 . . Atlas-SNP GAK 2580 hgsc.bcm.edu hg19 4 843758 843758 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GAK NM_005255 exon27 c.G3756A p.V1252V CATGCCCACGGGC . 84.0 4.0 94.0 0.0 . 104 . . Atlas-SNP SLC26A1 10861 hgsc.bcm.edu hg19 4 984946 984946 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC26A1 NM_022042 exon2 c.C546A p.T182T GAGGGCGGTGGCG . 121.0 5.0 156.0 0.0 . 44 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3131704 3131704 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d HTT,NS,carcinoma,0,1 HTT NM_002111 exon13 c.G1797T p.Q599H GCCCCAGGATGAA . 99.0 6.0 100.0 0.0 . 221 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3225849 3225849 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HTT NM_002111 exon56 c.G7756T p.A2586S TCTCCGGCTACTA . 98.0 35.0 98.0 0.0 . 221 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3241606 3241606 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HTT NM_002111 exon67 c.G9249T p.L3083L CAAGCTGGAGCAG . 92.0 4.0 91.0 0.0 . 221 . . Atlas-SNP RGS12 6002 hgsc.bcm.edu hg19 4 3424105 3424105 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RGS12 NM_002926 exon11 c.G2841T p.S947S CCAGTCGGAGGCC . 122.0 5.0 141.0 0.0 . 128 . . Atlas-SNP HGFAC 3083 hgsc.bcm.edu hg19 4 3443800 3443800 + Silent SNP G G C rs372137428 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HGFAC NM_001528 exon1 c.G72C p.L24L CCTCCTGCTGCTG . 22.0 4.0 27.0 0.0 . 69 . . Atlas-SNP STK32B 55351 hgsc.bcm.edu hg19 4 5399971 5399971 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d STK32B,NS,carcinoma,0,1 STK32B NM_018401 exon5 c.G472T p.G158X GAACACGGTAAGC . 96.0 4.0 146.0 0.0 . 87 . . Atlas-SNP SORCS2 57537 hgsc.bcm.edu hg19 4 7735080 7735080 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SORCS2 NM_020777 exon24 c.C3140T p.A1047V TGAACGCACAGAA . 107.0 5.0 117.0 0.0 . 98 . . Atlas-SNP WDR1 9948 hgsc.bcm.edu hg19 4 10100740 10100740 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDR1 NM_017491 exon4 c.T253C p.W85R TATCCCAGATCCT . 99.0 4.0 173.0 0.0 . 93 . . Atlas-SNP BOD1L1 259282 hgsc.bcm.edu hg19 4 13603749 13603749 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_148894 exon10 c.G4775A p.G1592D GCCCCACCTTCTT . 95.0 4.0 123.0 0.0 . . . . Atlas-SNP KCNIP4 80333 hgsc.bcm.edu hg19 4 20852249 20852249 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d KCNIP4_ENST00000447367,NS,carcinoma,+1,4 KCNIP4 NM_025221 exon2 c.C145T p.R49W CAGGCCGATGCCT . 43.0 2.0 57.0 0.0 . 85 . . Atlas-SNP LGI2 55203 hgsc.bcm.edu hg19 4 25005815 25005815 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LGI2 NM_018176 exon8 c.G896T p.G299V TGAGAGCCACCGA . 89.0 4.0 152.0 0.0 . 62 . . Atlas-SNP SLAIN2 57606 hgsc.bcm.edu hg19 4 48422205 48422205 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLAIN2 NM_020846 exon7 c.T1424C p.V475A AACCAGTGAAAGC . 96.0 4.0 178.0 0.0 . 31 . . Atlas-SNP TMPRSS11BNL 401136 hgsc.bcm.edu hg19 4 69078095 69078095 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMPRSS11BNL NM_001129907 exon2 c.C109A p.H37N GAAAATGAACAAG . 306.0 89.0 438.0 1.0 . 4 . . Atlas-SNP ANKRD17 26057 hgsc.bcm.edu hg19 4 74005966 74005966 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANKRD17 NM_032217 exon15 c.A2367G p.P789P GTTTGCTGGCAAA . 84.0 4.0 89.0 0.0 . 214 . . Atlas-SNP G3BP2 9908 hgsc.bcm.edu hg19 4 76573877 76573877 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . G3BP2 NM_012297 exon9 c.C874T p.R292C GTTCACGCACACG . 35.0 4.0 34.0 0.0 . 52 . . Atlas-SNP SCD5 79966 hgsc.bcm.edu hg19 4 83582036 83582036 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SCD5 NM_024906 exon4 c.T764C p.V255A CAGAATACCTCCA . 99.0 4.0 114.0 0.0 . 58 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87690933 87690933 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPN13 NM_080685 exon29 c.G4516T p.E1506X ACATTTGAGGTAA . 93.0 4.0 81.0 0.0 . 203 . . Atlas-SNP HERC6 55008 hgsc.bcm.edu hg19 4 89356960 89356960 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HERC6 NM_017912 exon18 c.T2334C p.P778P CCTTCCTTTCCCA . 104.0 5.0 129.0 0.0 . 104 . . Atlas-SNP UNC5C 8633 hgsc.bcm.edu hg19 4 96104119 96104119 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UNC5C NM_003728 exon14 c.G2380A p.V794I TGCAAACCAGCTC . 98.0 4.0 155.0 0.0 . 141 . . Atlas-SNP TET2 54790 hgsc.bcm.edu hg19 4 106155605 106155605 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TET2 NM_001127208 exon3 c.A506T p.H169L CAACACATAACTG . 149.0 43.0 220.0 0.0 . 1762 . . Atlas-SNP SGMS2 166929 hgsc.bcm.edu hg19 4 108824505 108824505 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SGMS2 NM_001136257 exon4 c.G690T p.T230T TCACACGGTTACG . 98.0 4.0 92.0 0.0 . 39 . . Atlas-SNP ELOVL6 79071 hgsc.bcm.edu hg19 4 111119423 111119423 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ELOVL6 NM_001130721 exon2 c.C69T p.I23I CCATTGGATGGCT . 78.0 5.0 140.0 0.0 . 27 . . Atlas-SNP ANXA5 308 hgsc.bcm.edu hg19 4 122607464 122607464 + Silent SNP G G T rs370872365 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANXA5 NM_001154 exon3 c.C73A p.R25R CCTTCCGAAGAGT . 80.0 4.0 124.0 0.0 . 29 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123274969 123274969 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA1109 NM_015312 exon80 c.G14102T p.G4701V TTGTAGGCTCCAG . 87.0 4.0 132.0 0.0 . 424 . . Atlas-SNP GAB1 2549 hgsc.bcm.edu hg19 4 144378898 144378898 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GAB1 NM_207123 exon7 c.G1651T p.G551C ACCATAGGTGACT . 87.0 4.0 112.0 0.0 . 80 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155244428 155244428 + Missense_Mutation SNP T T G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d DCHS2_ENST00000339452,NS,carcinoma,0,1 DCHS2 NM_001142552 exon8 c.A4072C p.K1358Q TTTGTTTTTTGCA . 81.0 5.0 53.0 1.0 . 594 . . Atlas-SNP ANXA10 11199 hgsc.bcm.edu hg19 4 169060641 169060641 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANXA10 NM_007193 exon3 c.T105C p.C35C AGACTGTGACAAA . 100.0 4.0 146.0 0.0 . 44 . . Atlas-SNP CBR4 84869 hgsc.bcm.edu hg19 4 169931172 169931172 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CBR4 NM_032783 exon1 c.C69A p.A23A TTTCCGGGCCATT . 93.0 4.0 116.0 0.0 . 15 . . Atlas-SNP GALNTL6 442117 hgsc.bcm.edu hg19 4 173730515 173730515 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GALNTL6 NM_001034845 exon6 c.A557G p.H186R TAGAACACCTGAA . 94.0 4.0 138.0 0.0 . 102 . . Atlas-SNP STOX2 56977 hgsc.bcm.edu hg19 4 184930350 184930350 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STOX2 NM_020225 exon3 c.T359C p.L120P ACACGCTGAACAC . 86.0 5.0 91.0 0.0 . 142 . . Atlas-SNP PDZD2 23037 hgsc.bcm.edu hg19 5 32098708 32098708 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PDZD2 NM_178140 exon22 c.C8186A p.S2729Y TGCTGTCCAGAAA . 65.0 4.0 67.0 0.0 . 306 . . Atlas-SNP NADKD1 133686 hgsc.bcm.edu hg19 5 36217963 36217963 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NADKD1 NM_001085411 exon6 c.G668T p.R223M TATAACCTGATTC . 103.0 5.0 164.0 0.0 . 47 . . Atlas-SNP MAST4 375449 hgsc.bcm.edu hg19 5 66459398 66459398 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MAST4 NM_001164664 exon29 c.G4391A p.R1464H GCTCCCGCAAGCA . 62.0 4.0 88.0 0.0 . 218 . . Atlas-SNP CARTPT 9607 hgsc.bcm.edu hg19 5 71015234 71015234 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CARTPT NM_004291 exon1 c.G114T p.L38L AGCCCTGGACATC . 95.0 4.0 104.0 0.0 . 10 . . Atlas-SNP ENC1 8507 hgsc.bcm.edu hg19 5 73930624 73930624 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ENC1 NM_003633 exon2 c.G1687T p.D563Y ACACGTCTAATGT . 100.0 4.0 150.0 0.0 . 56 . . Atlas-SNP GFM2 84340 hgsc.bcm.edu hg19 5 74028915 74028915 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GFM2 NM_032380 exon16 c.C1519A p.H507N ACGCATGTTCCAA . 84.0 4.0 108.0 0.0 . 38 . . Atlas-SNP JMY 133746 hgsc.bcm.edu hg19 5 78533050 78533050 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . JMY NM_152405 exon1 c.A577G p.I193V GAGGAGATAGAGG . 121.0 5.0 206.0 0.0 . 82 . . Atlas-SNP CMYA5 202333 hgsc.bcm.edu hg19 5 79034137 79034137 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CMYA5 NM_153610 exon2 c.G9549T p.L3183L ATTTCTGGAGGAG . 86.0 4.0 111.0 0.0 . 643 . . Atlas-SNP THBS4 7060 hgsc.bcm.edu hg19 5 79351663 79351663 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . THBS4 NM_003248 exon3 c.C348T p.N116N CAACAACCTGCAG . 82.0 4.0 151.0 0.0 . 82 . . Atlas-SNP THBS4 7060 hgsc.bcm.edu hg19 5 79355537 79355537 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . THBS4 NM_003248 exon7 c.T796C p.F266L CTCAAGTTTCAGT . 54.0 4.0 94.0 0.0 . 82 . . Atlas-SNP ARRDC3 57561 hgsc.bcm.edu hg19 5 90670966 90670966 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ARRDC3,bladder,carcinoma,0,1 ARRDC3 NM_020801 exon5 c.G643A p.E215K AGTTCTCAATCTC . 64.0 3.0 51.0 0.0 . 56 . . Atlas-SNP MCTP1 79772 hgsc.bcm.edu hg19 5 94275844 94275844 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MCTP1 NM_024717 exon5 c.G1117T p.G373X TGATTCCAAGATC . 82.0 4.0 124.0 0.0 . 110 . . Atlas-SNP ARSK 153642 hgsc.bcm.edu hg19 5 94939217 94939217 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARSK NM_198150 exon8 c.C1598A p.P533Q TGAATCCAAGAGC . 73.0 4.0 74.0 0.0 . 29 . . Atlas-SNP TRPC7 57113 hgsc.bcm.edu hg19 5 135692571 135692571 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRPC7 NM_001167576 exon2 c.A505G p.I169V CCAGGATGATGGG . 93.0 4.0 116.0 0.0 . 126 . . Atlas-SNP KIF20A 10112 hgsc.bcm.edu hg19 5 137518950 137518950 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIF20A NM_005733 exon8 c.T925C p.Y309H GAGATCTACAACG . 84.0 4.0 83.0 0.0 . 53 . . Atlas-SNP ETF1 2107 hgsc.bcm.edu hg19 5 137844000 137844000 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ETF1 NM_004730 exon11 c.C1308T p.D436D CTAGTAGTCATCA . 124.0 19.0 96.0 0.0 . 38 . . Atlas-SNP PSD2 84249 hgsc.bcm.edu hg19 5 139189371 139189371 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PSD2 NM_032289 exon2 c.C346A p.P116T CTCTACCCAGATG . 113.0 5.0 64.0 0.0 . 88 . . Atlas-SNP PCDHAC2 56134 hgsc.bcm.edu hg19 5 140347691 140347691 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCDHAC2 NM_031883 exon1 c.C1340A p.P447Q GAATACCGCAGCT . 87.0 5.0 151.0 0.0 . 142 . . Atlas-SNP PCDHGA2 56113 hgsc.bcm.edu hg19 5 140719523 140719523 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCDHGA2 NM_018915 exon1 c.A985G p.T329A CTTCTAACCAGAG . 98.0 4.0 149.0 0.0 . 205 . . Atlas-SNP PCDHGA6 56109 hgsc.bcm.edu hg19 5 140754660 140754660 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCDHGA6 NM_018919 exon1 c.T1010C p.I337T TAACTATCTTGGA . 98.0 6.0 151.0 0.0 . 219 . . Atlas-SNP PCDHGA7 56108 hgsc.bcm.edu hg19 5 140762724 140762724 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCDHGA7 NM_032087 exon1 c.T258C p.T86T GGTCACTGCGGGC . 97.0 4.0 160.0 0.0 . 130 . . Atlas-SNP PCDHGB4 8641 hgsc.bcm.edu hg19 5 140768682 140768682 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d PCDHGB4,NS,carcinoma,0,1 PCDHGB4 NM_032098 exon1 c.G1231T p.E411X GACCGCGAGCAGA . 83.0 4.0 92.0 0.0 . 125 . . Atlas-SNP PCDHGB4 8641 hgsc.bcm.edu hg19 5 140769224 140769224 + Silent SNP G G T rs372714152 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d PCDHGB4,colon,carcinoma,0,1 PCDHGB4 NM_032098 exon1 c.G1773T p.A591A AGTGGCGGTGGAC . 63.0 3.0 81.0 0.0 . 125 . . Atlas-SNP DIAPH1 1729 hgsc.bcm.edu hg19 5 140953135 140953135 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DIAPH1 NM_005219 exon16 c.C2282A p.P761Q AGAACTGGGGCTG . 94.0 5.0 133.0 0.0 . 64 . . Atlas-SNP PDE6A 5145 hgsc.bcm.edu hg19 5 149278051 149278051 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PDE6A NM_000440 exon10 c.G1282T p.G428C ACCAGCCCAGAAA . 57.0 4.0 52.0 0.0 . 98 . . Atlas-SNP NDST1 3340 hgsc.bcm.edu hg19 5 149927823 149927823 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NDST1 NM_001543 exon12 c.T2189C p.F730S ACACCTTCCATGA . 104.0 5.0 133.0 0.0 . 79 . . Atlas-SNP TIMD4 91937 hgsc.bcm.edu hg19 5 156349214 156349214 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TIMD4 NM_138379 exon7 c.C908A p.P303H GACATGGGTATTC . 82.0 5.0 125.0 0.0 . 94 . . Atlas-SNP C5orf52 100190949 hgsc.bcm.edu hg19 5 157102111 157102111 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C5orf52 NM_001145132 exon2 c.C224A p.S75Y TGAATTCCAGTGA . 90.0 4.0 157.0 0.0 . 17 . . Atlas-SNP GABRA1 2554 hgsc.bcm.edu hg19 5 161300201 161300201 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GABRA1 NM_001127643 exon6 c.C334A p.R112R GTCCTCCGGTTAA . 133.0 42.0 167.0 0.0 . 132 . . Atlas-SNP TENM2 57451 hgsc.bcm.edu hg19 5 167675305 167675305 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001122679 exon27 c.C7334T p.P2445L CGGCCCCCTTTAA . 98.0 4.0 144.0 0.0 . . . . Atlas-SNP TENM2 57451 hgsc.bcm.edu hg19 5 167689229 167689229 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001122679 exon29 c.G7712T p.R2571L AAGGGCGGGTGAC . 89.0 6.0 115.0 0.0 . . . . Atlas-SNP CDHR2 54825 hgsc.bcm.edu hg19 5 175995734 175995734 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CDHR2 NM_017675 exon4 c.T180C p.Y60Y GACCTATGGGATG . 98.0 4.0 121.0 0.0 . 152 . . Atlas-SNP UIMC1 51720 hgsc.bcm.edu hg19 5 176396709 176396709 + Splice_Site SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UIMC1 NM_016290 exon6 c.358-2A>G . CAACTCTGAAACA . 89.0 4.0 107.0 0.0 . 55 . . Atlas-SNP ZNF346 23567 hgsc.bcm.edu hg19 5 176477805 176477805 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF346 NM_012279 exon5 c.C571T p.H191Y CTCTGCCATGCAA . 71.0 4.0 129.0 0.0 . 24 . . Atlas-SNP FGFR4 2264 hgsc.bcm.edu hg19 5 176523334 176523334 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d FGFR4_ENST00000292408,colon,carcinoma,0,2 FGFR4 NM_002011 exon15 c.G1991T p.R664L TTGACCGGGTGTA . 75.0 3.0 127.0 0.0 . 174 . . Atlas-SNP NSD1 64324 hgsc.bcm.edu hg19 5 176722236 176722236 + Missense_Mutation SNP A A C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NSD1 NM_022455 exon23 c.A7867C p.S2623R GAGCAAAGTCCCT . 110.0 39.0 151.0 0.0 . 416 . . Atlas-SNP NSD1 64324 hgsc.bcm.edu hg19 5 176722361 176722361 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NSD1 NM_022455 exon23 c.T7992C p.S2664S CTGGTCTCTTGGA . 96.0 5.0 139.0 0.0 . 416 . . Atlas-SNP F12 2161 hgsc.bcm.edu hg19 5 176833015 176833015 + Silent SNP G G T rs201132135 bycluster;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . F12 NM_000505 exon3 c.C163A p.R55R GCTGCCGGTGGTA . 87.0 4.0 127.0 0.0 . 35 . . Atlas-SNP ZNF354C 30832 hgsc.bcm.edu hg19 5 178506014 178506014 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF354C NM_014594 exon5 c.G581T p.G194V CATTTGGGAAAGA . 70.0 5.0 71.0 0.0 . 77 . . Atlas-SNP MGAT1 4245 hgsc.bcm.edu hg19 5 180219412 180219412 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MGAT1 NM_001114617 exon3 c.G560T p.R187L TAGTGGCGCGCGA . 91.0 30.0 110.0 0.0 . 48 . . Atlas-SNP TRIM41 90933 hgsc.bcm.edu hg19 5 180651055 180651055 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRIM41 NM_201627 exon1 c.T56C p.V19A AGGCGGTGTGCGC . 100.0 4.0 115.0 0.0 . 96 . . Atlas-SNP GNB2L1 10399 hgsc.bcm.edu hg19 5 180668513 180668513 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GNB2L1 NM_006098 exon3 c.T408C p.G136G GCACACACCCAGG . 76.0 5.0 76.0 0.0 . 22 . . Atlas-SNP SLC22A23 63027 hgsc.bcm.edu hg19 6 3416016 3416016 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC22A23 NM_015482 exon2 c.G728A p.G243D AGGTAGCCAAAGA . 104.0 5.0 174.0 0.0 . 89 . . Atlas-SNP GCNT2 2651 hgsc.bcm.edu hg19 6 10621632 10621632 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GCNT2 NM_145649 exon4 c.C974T p.A325V TCAGAGCTATAAA . 87.0 4.0 90.0 0.0 . 123 . . Atlas-SNP TBC1D7 51256 hgsc.bcm.edu hg19 6 13316857 13316857 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TBC1D7 NM_001143965 exon5 c.C465A p.T155T GCGTCGGGTGATC . 96.0 4.0 101.0 0.0 . 34 . . Atlas-SNP SOX4 6659 hgsc.bcm.edu hg19 6 21595158 21595158 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SOX4,bladder,carcinoma,0,1 SOX4 NM_003107 exon1 c.G393A p.R131R GCCCAGGAAGAAG . 59.0 4.0 96.0 0.0 . 11 . . Atlas-SNP HIST1H2BA 255626 hgsc.bcm.edu hg19 6 25727451 25727451 + Silent SNP G G T rs145569895 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HIST1H2BA NM_170610 exon1 c.G315T p.P105P ACTGCCGGGAGAG . 125.0 6.0 124.0 0.0 . 25 . G|1.000;C|0.000 Atlas-SNP LOC554223 0 hgsc.bcm.edu hg19 6 29760408 29760408 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001207043 exon2 c.A493G p.T165A ACAGGGACCGCCA . 83.0 5.0 37.0 0.0 . . . . Atlas-SNP ATP6V1G2 534 hgsc.bcm.edu hg19 6 31513188 31513188 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATP6V1G2 NM_130463 exon3 c.C354A p.A118A GCCCTAGGCAGAA . 58.0 4.0 56.0 0.0 . 15 . . Atlas-SNP TNF 7124 hgsc.bcm.edu hg19 6 31544346 31544346 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNF NM_000594 exon2 c.C222A p.A74A TCTGGCCCAGGCA . 74.0 4.0 73.0 0.0 . 15 . . Atlas-SNP CLIC1 1192 hgsc.bcm.edu hg19 6 31698776 31698776 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CLIC1 NM_001288 exon6 c.T569C p.V190A TTACACACCACCT . 123.0 5.0 96.0 0.0 . 15 . . Atlas-SNP TNXB 7148 hgsc.bcm.edu hg19 6 32029479 32029479 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNXB NM_019105 exon21 c.C7187A p.P2396H GGGCTGGGGGTCT . 115.0 5.0 131.0 0.0 . 553 . . Atlas-SNP TNXB 7148 hgsc.bcm.edu hg19 6 32038106 32038106 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNXB NM_019105 exon14 c.C5076A p.L1692L CCAGGAGAGGCGC . 166.0 31.0 187.0 0.0 . 553 . . Atlas-SNP RNF5 6048 hgsc.bcm.edu hg19 6 32148076 32148076 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RNF5 NM_006913 exon6 c.C516T p.F172F CATCTTCTTCTTT . 63.0 4.0 44.0 0.0 . 16 . . Atlas-SNP SLC39A7 7922 hgsc.bcm.edu hg19 6 33170874 33170874 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC39A7 NM_006979 exon6 c.C1128A p.S376R CTGCAGCAAAAAG . 84.0 4.0 119.0 0.0 . 32 . . Atlas-SNP DEF6 50619 hgsc.bcm.edu hg19 6 35288753 35288753 + Splice_Site SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DEF6 NM_022047 exon10 c.1672+2T>A . TGGAGGTGAGAAG . 93.0 4.0 134.0 0.0 . 36 . . Atlas-SNP FKBP5 2289 hgsc.bcm.edu hg19 6 35604882 35604882 + Silent SNP A A C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FKBP5 NM_001145775 exon4 c.T159G p.V53V GACATAAACTTTG . 117.0 40.0 204.0 0.0 . 64 . . Atlas-SNP SLC26A8 116369 hgsc.bcm.edu hg19 6 35918964 35918964 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC26A8 NM_052961 exon19 c.G2448T p.R816R GGTTTCCCGTATC . 99.0 4.0 146.0 0.0 . 95 . . Atlas-SNP TREM2 54209 hgsc.bcm.edu hg19 6 41130810 41130810 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TREM2 NM_018965 exon1 c.T11C p.L4P AGCCGGAGAGGCT . 88.0 4.0 139.0 0.0 . 35 . . Atlas-SNP KLHL31 401265 hgsc.bcm.edu hg19 6 53516499 53516499 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLHL31 NM_001003760 exon3 c.C1802A p.P601H GCCTCGGGTAGCT . 88.0 5.0 133.0 0.0 . 48 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56350122 56350122 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d DST_ENST00000370769,pharynx,carcinoma,0,1 DST NM_015548 exon69 c.C13326A p.I4442I ATTATCGATCAGA . 106.0 5.0 150.0 0.0 . 1427 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56365936 56365936 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DST NM_015548 exon61 c.A11969G p.E3990G TTCTGCTCACTTA . 77.0 5.0 103.0 0.0 . 1427 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56376052 56376052 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DST NM_015548 exon54 c.A10854G p.K3618K ATCTTCTTTAATT . 132.0 6.0 164.0 0.0 . 1427 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 66094343 66094343 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EYS NM_001142801 exon8 c.G1235A p.C412Y AGTTTACAGTGGT . 83.0 4.0 131.0 0.0 . 527 . . Atlas-SNP BAI3 577 hgsc.bcm.edu hg19 6 69666002 69666002 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BAI3 NM_001704 exon7 c.A1282G p.T428A CAGTGCACTGCAG . 70.0 4.0 93.0 0.0 . 451 . . Atlas-SNP COL19A1 1310 hgsc.bcm.edu hg19 6 70897949 70897949 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d COL19A1,right_upper_lobe,carcinoma,+1,1 COL19A1 NM_001858 exon47 c.G3027T p.P1009P CATTCCGGTAAGT . 97.0 4.0 120.0 1.0 . 232 . . Atlas-SNP TMEM30A 55754 hgsc.bcm.edu hg19 6 75970580 75970580 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMEM30A NM_018247 exon4 c.A501G p.P167P AGCAATTGGTTTG . 189.0 69.0 263.0 0.0 . 40 . . Atlas-SNP MYO6 4646 hgsc.bcm.edu hg19 6 76542624 76542624 + Missense_Mutation SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYO6 NM_004999 exon6 c.T457A p.S153T GGAGAATCAGGAG . 84.0 4.0 109.0 0.0 . 124 . . Atlas-SNP SNAP91 9892 hgsc.bcm.edu hg19 6 84300973 84300973 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SNAP91 NM_001242792 exon21 c.T1971C p.S657S AGCCTGAGATGCA . 44.0 4.0 87.0 0.0 . 199 . . Atlas-SNP CASP8AP2 9994 hgsc.bcm.edu hg19 6 90577355 90577355 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CASP8AP2 NM_001137667 exon8 c.C4346T p.P1449L CATCGCCTCTGAA . 79.0 4.0 105.0 0.0 . 108 . . Atlas-SNP BACH2 60468 hgsc.bcm.edu hg19 6 90661010 90661010 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BACH2 NM_001170794 exon5 c.G815T p.R272M TGCCCCCTGGCAA . 95.0 4.0 135.0 0.0 . 224 . . Atlas-SNP MANEA 79694 hgsc.bcm.edu hg19 6 96034523 96034523 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MANEA NM_024641 exon2 c.G208A p.E70K AACAGTGAAACAA . 96.0 4.0 111.0 0.0 . 58 . . Atlas-SNP BEND3 57673 hgsc.bcm.edu hg19 6 107390471 107390471 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BEND3 NM_001080450 exon5 c.C1924A p.R642S GGCAGCGCTCATC . 77.0 4.0 94.0 0.0 . 70 . . Atlas-SNP WASF1 8936 hgsc.bcm.edu hg19 6 110426738 110426738 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WASF1 NM_001024935 exon7 c.A585G p.R195R AGGTGCTCTTGGC . 95.0 4.0 103.0 0.0 . 35 . . Atlas-SNP HS3ST5 222537 hgsc.bcm.edu hg19 6 114383915 114383915 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HS3ST5 NM_153612 exon1 c.G95T p.G32V AAGCTCCCAACTC . 100.0 4.0 125.0 0.0 . 80 . . Atlas-SNP ZUFSP 221302 hgsc.bcm.edu hg19 6 116988328 116988328 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZUFSP NM_145062 exon2 c.A28G p.T10A TTACTGTTTCACC . 99.0 4.0 120.0 0.0 . 46 . . Atlas-SNP GOPC 57120 hgsc.bcm.edu hg19 6 117884507 117884507 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GOPC NM_020399 exon9 c.A1299G p.G433G CAGGTCTCCATTT . 96.0 4.0 129.0 0.0 . 29 . . Atlas-SNP RNF146 81847 hgsc.bcm.edu hg19 6 127607967 127607967 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RNF146 NM_001242850 exon3 c.G209T p.R70L GAAAGCGGTGTGC . 200.0 9.0 243.0 0.0 . 31 . . Atlas-SNP THEMIS 387357 hgsc.bcm.edu hg19 6 128134090 128134090 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . THEMIS NM_001010923 exon4 c.A1696G p.T566A ACTTTGTTTCCTC . 95.0 4.0 88.0 0.0 . 168 . . Atlas-SNP ENPP3 5169 hgsc.bcm.edu hg19 6 131996238 131996238 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ENPP3 NM_005021 exon9 c.T781C p.Y261H GCAATGTATCAAG . 84.0 4.0 92.0 0.0 . 117 . . Atlas-SNP ENPP3 5169 hgsc.bcm.edu hg19 6 132068028 132068028 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ENPP3 NM_005021 exon25 c.A2560G p.K854E CAGGATAAAGTGC . 151.0 37.0 217.0 0.0 . 117 . . Atlas-SNP VNN2 8875 hgsc.bcm.edu hg19 6 133071001 133071001 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VNN2 NM_004665 exon6 c.T1204C p.C402R GTGTGCAGACCTA . 93.0 4.0 115.0 0.0 . 83 . . Atlas-SNP PEX7 5191 hgsc.bcm.edu hg19 6 137193356 137193356 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PEX7 NM_000288 exon8 c.T768C p.S256S TGCTTCTGTGCTG . 92.0 5.0 100.0 0.0 . 24 . . Atlas-SNP NHSL1 57224 hgsc.bcm.edu hg19 6 138745873 138745873 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NHSL1 NM_020464 exon7 c.C4178T p.P1393L CCGGTGGGTGTCA . 105.0 5.0 136.0 0.0 . 99 . . Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151152098 151152098 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLEKHG1 NM_001029884 exon16 c.A1851G p.T617T CAACACATGCCCT . 62.0 4.0 114.0 0.0 . 97 . . Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157502170 157502170 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARID1B NM_020732 exon12 c.A3203G p.E1068G AGCCAGAGAGAAA . 38.0 4.0 73.0 0.0 . 320 . . Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157502190 157502190 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ARID1B_ENST00000346085,NS,adenocarcinoma,0,2 ARID1B NM_020732 exon12 c.C3223A p.R1075R GTCGACCGATACC . 43.0 3.0 78.0 0.0 . 320 . . Atlas-SNP FNDC1 84624 hgsc.bcm.edu hg19 6 159618551 159618551 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FNDC1 NM_032532 exon2 c.C198A p.T66T TGCTACCAGTAGA . 96.0 4.0 134.0 0.0 . 250 . . Atlas-SNP IGF2R 3482 hgsc.bcm.edu hg19 6 160450671 160450671 + Missense_Mutation SNP C C A rs373279911 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IGF2R NM_000876 exon7 c.C866A p.P289Q TTTGCCCGTCGGA . 125.0 5.0 168.0 0.0 . 251 . . Atlas-SNP SLC22A2 6582 hgsc.bcm.edu hg19 6 160663434 160663434 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC22A2 NM_003058 exon8 c.A1280G p.D427G TGTAGATCTAAGA . 61.0 4.0 124.0 0.0 . 78 . . Atlas-SNP SLC22A2 6582 hgsc.bcm.edu hg19 6 160666525 160666525 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC22A2 NM_003058 exon6 c.A1010G p.D337G ACCAAGTCAAGAA . 79.0 4.0 85.0 0.0 . 78 . . Atlas-SNP MAP3K4 4216 hgsc.bcm.edu hg19 6 161508771 161508771 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MAP3K4 NM_006724 exon10 c.G2608A p.A870T ACTCTTGCTGAGG . 92.0 4.0 129.0 0.0 . 364 . . Atlas-SNP RNASET2 8635 hgsc.bcm.edu hg19 6 167356557 167356557 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RNASET2 NM_003730 exon5 c.G282A p.R94R GTATGCCCTCATT . 70.0 4.0 72.0 0.0 . 18 . . Atlas-SNP ADAP1 11033 hgsc.bcm.edu hg19 7 975141 975141 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADAP1 NM_006869 exon2 c.A83G p.D28G TCGGGATCTGCAA . 93.0 4.0 143.0 0.0 . 23 . . Atlas-SNP IQCE 23288 hgsc.bcm.edu hg19 7 2644523 2644523 + Silent SNP G G A rs201471152 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IQCE NM_152558 exon19 c.G1641A p.V547V GGCTGTGGTGCTT . 91.0 4.0 111.0 0.0 . 66 . G|1.000;T|0.000 Atlas-SNP RADIL 55698 hgsc.bcm.edu hg19 7 4917718 4917718 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RADIL NM_018059 exon2 c.A53G p.K18R TGCCGCTTCAGTT . 83.0 4.0 98.0 0.0 . 110 . . Atlas-SNP FAM220A 84792 hgsc.bcm.edu hg19 7 6370275 6370275 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001037163 exon2 c.C511A p.P171T TTGGTGGGTCATC . 118.0 5.0 139.0 0.0 . . . . Atlas-SNP DAGLB 221955 hgsc.bcm.edu hg19 7 6474496 6474496 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DAGLB NM_139179 exon4 c.T575C p.V192A TCCCACACGCTTG . 114.0 6.0 190.0 0.0 . 74 . . Atlas-SNP GRID2IP 392862 hgsc.bcm.edu hg19 7 6561059 6561059 + Splice_Site SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GRID2IP NM_001145118 exon7 c.1084+1G>A . GTCTCACCACTGG . 97.0 5.0 144.0 0.0 . 82 . . Atlas-SNP ITGB8 3696 hgsc.bcm.edu hg19 7 20444277 20444277 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ITGB8 NM_002214 exon11 c.T1714C p.C572R GGCAGATGCCAAT . 100.0 6.0 136.0 0.0 . 159 . . Atlas-SNP CBX3 11335 hgsc.bcm.edu hg19 7 26248156 26248156 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CBX3 NM_016587 exon4 c.C311A p.S104X GCAAATCAAAGAA . 116.0 5.0 139.0 0.0 . 25 . . Atlas-SNP SKAP2 8935 hgsc.bcm.edu hg19 7 26779530 26779530 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SKAP2 NM_003930 exon5 c.G361A p.G121S GGTAGCCAGCCTT . 99.0 4.0 162.0 0.0 . 40 . . Atlas-SNP CREB5 9586 hgsc.bcm.edu hg19 7 28547292 28547292 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CREB5,colon,carcinoma,0,2 CREB5 NM_182898 exon4 c.C228A p.S76R CTTCAGCGAGCTG . 119.0 5.0 162.0 0.0 . 115 . . Atlas-SNP VPS41 27072 hgsc.bcm.edu hg19 7 38798051 38798051 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS41 NM_014396 exon18 c.G1453T p.G485X GATCTCCAGGCCA . 95.0 4.0 150.0 0.0 . 102 . . Atlas-SNP INHBA 3624 hgsc.bcm.edu hg19 7 41729530 41729530 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d INHBA,NS,carcinoma,0,1 INHBA NM_002192 exon3 c.C999A p.I333I CCAGCCGATGTCC . 32.0 2.0 50.0 1.0 . 118 . . Atlas-SNP NACAD 23148 hgsc.bcm.edu hg19 7 45125286 45125286 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NACAD NM_001146334 exon2 c.T493C p.S165P GAGGGGAAGGCAC . 80.0 4.0 78.0 0.0 . 44 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47870945 47870945 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PKD1L1 NM_138295 exon42 c.A6343G p.S2115G CACTGCTGGGTGC . 92.0 4.0 129.0 0.0 . 328 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47874578 47874578 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PKD1L1 NM_138295 exon39 c.C6114A p.T2038T TGCCTCGGTCTGT . 84.0 4.0 109.0 0.0 . 328 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47898327 47898327 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PKD1L1 NM_138295 exon27 c.A4306G p.K1436E CCTCCTTCGAGTT . 77.0 4.0 80.0 0.0 . 328 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47947753 47947753 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PKD1L1 NM_138295 exon9 c.C1323A p.A441A AGACACGGCCTCA . 75.0 4.0 75.0 0.0 . 328 . . Atlas-SNP ZNF107 51427 hgsc.bcm.edu hg19 7 64166707 64166707 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF107 NM_016220 exon7 c.T25C p.S9P GTAATGTCTTTTC . 63.0 4.0 78.0 0.0 . 107 . . Atlas-SNP GUSB 2990 hgsc.bcm.edu hg19 7 65435344 65435344 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GUSB NM_000181 exon9 c.C1401A p.I467I GTGAGCGATCACC . 89.0 5.0 82.0 0.0 . 52 . . Atlas-SNP WBSCR17 64409 hgsc.bcm.edu hg19 7 70880904 70880904 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WBSCR17 NM_022479 exon4 c.G619A p.V207I GAGTATGTCCACA . 86.0 21.0 154.0 0.0 . 208 . . Atlas-SNP FGL2 10875 hgsc.bcm.edu hg19 7 76828978 76828978 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FGL2 NM_006682 exon1 c.A133G p.S45G CTCTGCTTTCTAG . 89.0 4.0 112.0 0.0 . 40 . . Atlas-SNP AKAP9 10142 hgsc.bcm.edu hg19 7 91652178 91652178 + Missense_Mutation SNP A A C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d .,2 AKAP9 NM_005751 exon14 c.A4003C p.K1335Q AAAACTAAACTTG . 116.0 7.0 50.0 2.0 . 788 . . Atlas-SNP CDK6 1021 hgsc.bcm.edu hg19 7 92300836 92300836 + Nonsense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CDK6 NM_001259 exon5 c.G551A p.W184X CTGTACCACAGCG . 137.0 6.0 92.0 0.0 . 30 . . Atlas-SNP ARPC1B 10095 hgsc.bcm.edu hg19 7 98988562 98988562 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARPC1B NM_005720 exon6 c.A547G p.T183A GCACCCACCCCGT . 70.0 4.0 36.0 0.0 . 41 . . Atlas-SNP ZNF655 79027 hgsc.bcm.edu hg19 7 99169920 99169920 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF655 NM_001085368 exon4 c.G294T p.S98S AATTTCGGAAGAA . 123.0 5.0 64.0 0.0 . 75 . . Atlas-SNP TAF6 6878 hgsc.bcm.edu hg19 7 99709449 99709449 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d TAF6,NS,carcinoma,0,1 TAF6 NM_001190415 exon9 c.C913A p.R305S TCACACGGACCTG . 125.0 5.0 154.0 0.0 . 55 . . Atlas-SNP C7orf43 55262 hgsc.bcm.edu hg19 7 99754538 99754538 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C7orf43 NM_018275 exon6 c.A923G p.N308S AGGGCATTCAGCG . 58.0 4.0 53.0 0.0 . 28 . . Atlas-SNP AGFG2 3268 hgsc.bcm.edu hg19 7 100161852 100161852 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AGFG2 NM_006076 exon11 c.G1312T p.G438W TCCTTCGGGGACT . 93.0 4.0 117.0 0.0 . 44 . . Atlas-SNP LRCH4 4034 hgsc.bcm.edu hg19 7 100175328 100175328 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRCH4 NM_002319 exon9 c.A1075G p.S359G CATGGCTGTCGAT . 72.0 4.0 67.0 0.0 . 53 . . Atlas-SNP SLC12A9 56996 hgsc.bcm.edu hg19 7 100454532 100454532 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC12A9 NM_001267812 exon5 c.A491G p.Y164C AGGGCTACGGCTG . 84.0 4.0 83.0 0.0 . 81 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100675798 100675798 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MUC17 NM_001040105 exon3 c.T1101C p.T367T GACCACTTCTACT . 83.0 4.0 70.0 0.0 . 804 . . Atlas-SNP CUX1 1523 hgsc.bcm.edu hg19 7 101840082 101840082 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CUX1 NM_001202543 exon15 c.C1424A p.S475Y GCTCATCCCTGGC . 146.0 6.0 162.0 0.0 . 253 . . Atlas-SNP LAMB4 22798 hgsc.bcm.edu hg19 7 107706357 107706357 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LAMB4 NM_007356 exon21 c.G2686T p.D896Y AACCATCAATACA . 81.0 5.0 65.0 0.0 . 253 . . Atlas-SNP LAMB4 22798 hgsc.bcm.edu hg19 7 107720067 107720067 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LAMB4 NM_007356 exon15 c.T1866C p.I622I AATGGCAATGGTG . 49.0 4.0 74.0 0.0 . 253 . . Atlas-SNP IMPDH1 3614 hgsc.bcm.edu hg19 7 128034563 128034563 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IMPDH1 NM_000883 exon15 c.A1641G p.A547A GATGCCTGCTATG . 91.0 4.0 96.0 0.0 . 38 . . Atlas-SNP FLNC 2318 hgsc.bcm.edu hg19 7 128494726 128494726 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FLNC NM_001458 exon41 c.C6987A p.A2329A TGTGGCCGGCGTG . 95.0 4.0 113.0 0.0 . 339 . . Atlas-SNP KIAA1549 57670 hgsc.bcm.edu hg19 7 138554406 138554406 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d KIAA1549_ENST00000422774,NS,carcinoma,0,2 KIAA1549 NM_020910 exon14 c.C4653T p.D1551D CAGGTCGTCTACC . 194.0 31.0 161.0 0.0 . 314 . . Atlas-SNP TRPV6 55503 hgsc.bcm.edu hg19 7 142574527 142574527 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRPV6 NM_018646 exon5 c.A551G p.E184G CCATGCTCAATGA . 119.0 5.0 148.0 0.0 . 108 . . Atlas-SNP AGAP3 116988 hgsc.bcm.edu hg19 7 150814236 150814236 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AGAP3 NM_001042535 exon3 c.A445G p.T149A TATCTGACGGGGA . 100.0 4.0 121.0 0.0 . 121 . . Atlas-SNP ASB10 136371 hgsc.bcm.edu hg19 7 150878505 150878505 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ASB10 NM_001142459 exon3 c.G625T p.G209C ACCGACCATCCAC . 94.0 4.0 120.0 0.0 . 99 . . Atlas-SNP PAXIP1 22976 hgsc.bcm.edu hg19 7 154738503 154738503 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PAXIP1 NM_007349 exon18 c.A2943G p.T981T TCCAGGTGTGATG . 49.0 4.0 44.0 0.0 . 150 . . Atlas-SNP UBE3C 9690 hgsc.bcm.edu hg19 7 156961778 156961778 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UBE3C NM_014671 exon3 c.C157A p.Q53K ATTATCCAGTCAT . 73.0 4.0 90.0 0.0 . 124 . . Atlas-SNP PTPRN2 5799 hgsc.bcm.edu hg19 7 157959974 157959974 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPRN2 NM_130843 exon6 c.C559A p.R187S AGAAGCGGTCATC . 95.0 5.0 71.0 0.0 . 243 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 2967694 2967694 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CSMD1 NM_033225 exon43 c.T6594C p.D2198D AATGTAATCGTTG . 52.0 4.0 72.0 0.0 . 1469 . . Atlas-SNP SGK223 0 hgsc.bcm.edu hg19 8 8185764 8185764 + Missense_Mutation SNP G G T rs150737128 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001080826 exon4 c.C2528A p.P843H AGCTTGGGGCTTG . 72.0 4.0 149.0 0.0 . . . G|1.000;A|0.000 Atlas-SNP RP1L1 94137 hgsc.bcm.edu hg19 8 10468763 10468763 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d RP1L1,right_upper_lobe,carcinoma,0,1 RP1L1 NM_178857 exon4 c.C2845T p.P949S AGCGGGGCAGAGA . 44.0 2.0 103.0 0.0 . 453 . . Atlas-SNP MSR1 4481 hgsc.bcm.edu hg19 8 15967718 15967718 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d MSR1,NS,carcinoma,0,1 MSR1 NM_138715 exon10 c.C1232T p.P411L CATATTGGACCAG . 73.0 3.0 132.0 0.0 . 140 . . Atlas-SNP EFHA2 286097 hgsc.bcm.edu hg19 8 16921741 16921741 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EFHA2 NM_181723 exon2 c.C530A p.P177H ATGAGCCCAAAGG . 87.0 4.0 130.0 0.0 . 60 . . Atlas-SNP VPS37A 137492 hgsc.bcm.edu hg19 8 17126365 17126365 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS37A NM_152415 exon4 c.T316C p.F106L TTTCAGTTTACAA . 79.0 4.0 117.0 0.0 . 22 . . Atlas-SNP EGR3 1960 hgsc.bcm.edu hg19 8 22548215 22548215 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EGR3 NM_004430 exon2 c.G935A p.R312Q AAGCTCCGCATGC . 100.0 4.0 207.0 0.0 . 33 . . Atlas-SNP TNFRSF10D 8793 hgsc.bcm.edu hg19 8 23003279 23003279 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNFRSF10D NM_003840 exon5 c.T638C p.L213P ATGATAAGGTAGT . 56.0 4.0 101.0 0.0 . 21 . . Atlas-SNP DPYSL2 1808 hgsc.bcm.edu hg19 8 26439530 26439530 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DPYSL2 NM_001197293 exon2 c.C400A p.Q134K GATGACCAGTCGT . 85.0 4.0 126.0 0.0 . 49 . . Atlas-SNP CHRNA2 1135 hgsc.bcm.edu hg19 8 27320754 27320754 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CHRNA2 NM_000742 exon6 c.C1206T p.H402H CAGCCAGTGATAA . 37.0 4.0 79.0 0.0 . 48 . . Atlas-SNP ESCO2 157570 hgsc.bcm.edu hg19 8 27633887 27633887 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ESCO2 NM_001017420 exon3 c.A62G p.H21R TTTTACACTTCAC . 79.0 4.0 143.0 0.0 . 50 . . Atlas-SNP HTRA4 203100 hgsc.bcm.edu hg19 8 38845473 38845473 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HTRA4 NM_153692 exon9 c.C1287T p.H429H AGATCACGATGTA . 46.0 4.0 87.0 0.0 . 25 . . Atlas-SNP ADAM9 8754 hgsc.bcm.edu hg19 8 38934925 38934925 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADAM9 NM_003816 exon16 c.G1876A p.G626R GGTGCTGGAAAGG . 85.0 4.0 173.0 0.0 . 66 . . Atlas-SNP ADAM2 2515 hgsc.bcm.edu hg19 8 39678655 39678655 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADAM2 NM_001464 exon6 c.A379G p.I127V GTTCTATTCCATA . 99.0 5.0 163.0 0.0 . 124 . . Atlas-SNP KAT6A 7994 hgsc.bcm.edu hg19 8 41790607 41790607 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001099412 exon18 c.T5131C p.F1711L GGGTGAAACTGTT . 72.0 4.0 185.0 0.0 . . . . Atlas-SNP POLB 5423 hgsc.bcm.edu hg19 8 42214709 42214709 + Missense_Mutation SNP A A G rs200554507 bycluster TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . POLB NM_002690 exon8 c.A445G p.R149G GAAAAAAGAATTC . 99.0 4.0 181.0 0.0 . 60 . A|0.999;G|0.001 Atlas-SNP PRKDC 5591 hgsc.bcm.edu hg19 8 48707064 48707064 + Splice_Site SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRKDC NM_001081640 exon75 c.10458-2A>T . GAGATCTAAAACA . 73.0 4.0 81.0 0.0 . 394 . . Atlas-SNP CHD7 55636 hgsc.bcm.edu hg19 8 61765595 61765595 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CHD7 NM_017780 exon31 c.C6311T p.A2104V TTGGTGCTGCTAA . 220.0 95.0 241.0 1.0 . 534 . . Atlas-SNP RRS1 23212 hgsc.bcm.edu hg19 8 67342183 67342183 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RRS1 NM_015169 exon1 c.C817T p.R273C CTGCTTCGTGTCA . 73.0 5.0 58.0 0.0 . 13 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69104651 69104651 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d PREX2,colon,carcinoma,0,1 PREX2 NM_024870 exon37 c.G4495A p.A1499T GCCTGTGCAAACA . 68.0 17.0 73.0 0.0 . 614 . . Atlas-SNP LY96 23643 hgsc.bcm.edu hg19 8 74941217 74941217 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LY96 NM_015364 exon5 c.T411C p.A137A TGAAGCTATTTCT . 94.0 4.0 84.0 0.0 . 17 . . Atlas-SNP MRPS28 28957 hgsc.bcm.edu hg19 8 80942312 80942312 + Silent SNP G G T rs147337080 bycluster;byfrequency;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MRPS28 NM_014018 exon1 c.C172A p.R58R AGTGCCGCTCCAA . 89.0 4.0 58.0 0.0 . 11 . G|0.997;A|0.003 Atlas-SNP WWP1 11059 hgsc.bcm.edu hg19 8 87439874 87439874 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WWP1 NM_007013 exon11 c.G1160T p.W387L GTAGTTGGGAAAG . 130.0 6.0 129.0 0.0 . 97 . . Atlas-SNP KIAA1429 25962 hgsc.bcm.edu hg19 8 95531221 95531221 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA1429 NM_015496 exon9 c.A2505G p.E835E CAAGGCTTCTTTG . 68.0 4.0 64.0 0.0 . 176 . . Atlas-SNP MTDH 92140 hgsc.bcm.edu hg19 8 98656988 98656988 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MTDH NM_178812 exon1 c.C254T p.P85L GGAGCCCGCCCCG . 32.0 4.0 28.0 0.0 . 54 . . Atlas-SNP FBXO43 286151 hgsc.bcm.edu hg19 8 101153750 101153750 + Silent SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d FBXO43_ENST00000428847,colon,carcinoma,0,3 FBXO43 NM_001029860 exon2 c.A732T p.L244L TTCAAATAGGCTA . 50.0 2.0 50.0 1.0 . 155 . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110457403 110457403 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PKHD1L1 NM_177531 exon38 c.G5305T p.G1769X ATTGAAGGAGAAG . 59.0 4.0 62.0 0.0 . 522 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113650925 113650925 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CSMD3_ENST00000343508,left_upper_lobe,carcinoma,0,2 CSMD3 NM_198123 exon21 c.G3526A p.E1176K TCTCACCAGAGAA . 25.0 2.0 26.0 0.0 . 2325 . . Atlas-SNP KIAA0196 9897 hgsc.bcm.edu hg19 8 126093910 126093910 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA0196 NM_014846 exon5 c.C511A p.R171R TGTATCGGTAGTA . 121.0 5.0 114.0 0.0 . 90 . . Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 131833641 131833641 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADCY8 NM_001115 exon13 c.T2701C p.S901P GCAGTGATACCTC . 97.0 4.0 88.0 0.0 . 291 . . Atlas-SNP KCNQ3 3786 hgsc.bcm.edu hg19 8 133153569 133153569 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNQ3 NM_004519 exon10 c.G1272A p.L424L GAGACCCAGCTTT . 105.0 50.0 85.0 0.0 . 164 . . Atlas-SNP PTK2 5747 hgsc.bcm.edu hg19 8 141753415 141753415 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTK2 NM_005607 exon20 c.G1715T p.R572L ACATTCCGAGCAG . 91.0 4.0 76.0 0.0 . 311 . . Atlas-SNP GPR20 2843 hgsc.bcm.edu hg19 8 142366956 142366956 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPR20 NM_005293 exon2 c.C1068A p.P356P AGCCTCGGGCCCA . 73.0 5.0 57.0 0.0 . 43 . . Atlas-SNP TSNARE1 203062 hgsc.bcm.edu hg19 8 143436037 143436037 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TSNARE1 NM_145003 exon2 c.C49T p.P17S CGAAAGGGCCACG . 64.0 5.0 58.0 0.0 . 59 . . Atlas-SNP BAI1 575 hgsc.bcm.edu hg19 8 143603470 143603470 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BAI1 NM_001702 exon20 c.G3169A p.G1057S TGCCTGGGCTGGG . 57.0 4.0 64.0 0.0 . 146 . . Atlas-SNP LYNX1 66004 hgsc.bcm.edu hg19 8 143846491 143846491 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d LYNX1_ENST00000317543,NS,carcinoma,0,2 LYNX1 NM_023946 exon4 c.C222T p.C74C CCTCAGGCATCTG . 39.0 3.0 71.0 0.0 . 40 . . Atlas-SNP PUF60 22827 hgsc.bcm.edu hg19 8 144904074 144904074 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PUF60 NM_078480 exon3 c.T121C p.S41P TGATGGAGTCTGT . 61.0 4.0 61.0 0.0 . 26 . . Atlas-SNP EPPK1 83481 hgsc.bcm.edu hg19 8 144942463 144942463 + Silent SNP G G T rs377506188 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EPPK1 NM_031308 exon1 c.C4959A p.T1653T GGGGTCGGTGTAG . 152.0 7.0 146.0 0.0 . 199 . . Atlas-SNP PLEC 5339 hgsc.bcm.edu hg19 8 144996328 144996328 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLEC NM_201380 exon32 c.A8072G p.E2691G CGCGCCTCCTCCA . 48.0 4.0 50.0 0.0 . 1144 . . Atlas-SNP EXOSC4 54512 hgsc.bcm.edu hg19 8 145135446 145135446 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EXOSC4 NM_019037 exon3 c.T680C p.L227P ACACCCTCTTAGA . 54.0 6.0 71.0 0.0 . 19 . . Atlas-SNP CPSF1 29894 hgsc.bcm.edu hg19 8 145622853 145622853 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CPSF1 NM_013291 exon22 c.A2234G p.E745G AGCATCTCCTCCT . 78.0 4.0 70.0 0.0 . 92 . . Atlas-SNP SLC39A4 55630 hgsc.bcm.edu hg19 8 145640174 145640174 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SLC39A4_ENST00000276833,NS,carcinoma,0,2 SLC39A4 NM_130849 exon5 c.A911G p.Q304R CTCAGCTGCTGTT . 75.0 3.0 94.0 1.0 . 54 . . Atlas-SNP TONSL 4796 hgsc.bcm.edu hg19 8 145659654 145659654 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TONSL NM_013432 exon21 c.C3094A p.Q1032K CCTGTTGGTGCTC . 90.0 4.0 125.0 0.0 . 128 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2056807 2056807 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SMARCA2 NM_139045 exon7 c.A1309G p.K437E CAGCAGAAGATTG . 65.0 4.0 107.0 0.0 . 313 . . Atlas-SNP ERMP1 79956 hgsc.bcm.edu hg19 9 5830996 5830996 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ERMP1 NM_024896 exon2 c.C371A p.P124H GTCCTGGGGCCAA . 89.0 4.0 134.0 0.0 . 63 . . Atlas-SNP BNC2 54796 hgsc.bcm.edu hg19 9 16552604 16552604 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BNC2 NM_017637 exon5 c.A593G p.K198R TCTTGCTTCAGGA . 77.0 5.0 163.0 0.0 . 166 . . Atlas-SNP CNTLN 54875 hgsc.bcm.edu hg19 9 17332673 17332673 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CNTLN NM_017738 exon10 c.A1589G p.K530R TACAGAAGCTGAG . 137.0 6.0 244.0 0.0 . 128 . . Atlas-SNP SH3GL2 6456 hgsc.bcm.edu hg19 9 17791315 17791315 + Silent SNP G G T rs150625805 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SH3GL2 NM_003026 exon7 c.G711T p.T237T AGTCACGGTCAGA . 91.0 4.0 234.0 0.0 . 60 . G|0.998;A|0.002 Atlas-SNP FOCAD 54914 hgsc.bcm.edu hg19 9 20907148 20907148 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_017794 exon24 c.2626-1G>T . CCCATAGGTTCAT . 64.0 4.0 80.0 0.0 . . . . Atlas-SNP TEK 7010 hgsc.bcm.edu hg19 9 27212778 27212778 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TEK NM_000459 exon17 c.G2760T p.L920L TGTGCTGGAGACG . 84.0 4.0 141.0 0.0 . 250 . . Atlas-SNP NFX1 4799 hgsc.bcm.edu hg19 9 33364038 33364038 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NFX1 NM_147133 exon20 c.G2904T p.E968D CAGTGAGGATTCT . 136.0 6.0 173.0 0.0 . 85 . . Atlas-SNP FRMPD1 22844 hgsc.bcm.edu hg19 9 37737222 37737222 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FRMPD1 NM_014907 exon14 c.C1531A p.R511R GCGCACCGGGTAT . 106.0 5.0 122.0 0.0 . 237 . . Atlas-SNP TJP2 9414 hgsc.bcm.edu hg19 9 71842715 71842715 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TJP2 NM_001170416 exon8 c.T1338C p.S446S ATTTTCTCCAGAG . 91.0 5.0 142.0 0.0 . 120 . . Atlas-SNP FAM189A2 9413 hgsc.bcm.edu hg19 9 72003281 72003281 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAM189A2 NM_004816 exon10 c.A1064G p.E355G TCCATGAACTTGT . 94.0 4.0 140.0 0.0 . 55 . . Atlas-SNP MAMDC2 256691 hgsc.bcm.edu hg19 9 72728033 72728033 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MAMDC2 NM_153267 exon5 c.T628C p.F210L CACACCTTCAAGA . 96.0 4.0 120.0 0.0 . 55 . . Atlas-SNP PCSK5 5125 hgsc.bcm.edu hg19 9 78749051 78749051 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCSK5 NM_006200 exon10 c.A1235G p.Q412R ACGTACAGCATGT . 72.0 4.0 73.0 0.0 . 329 . . Atlas-SNP SPATA31D1 389763 hgsc.bcm.edu hg19 9 84608274 84608274 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001001670 exon4 c.C2889A p.S963S TAAGTCCCGTAGT . 89.0 4.0 107.0 0.0 . . . . Atlas-SNP NTRK2 4915 hgsc.bcm.edu hg19 9 87339221 87339221 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NTRK2 NM_001018065 exon8 c.C803T p.A268V GTGTGGCGGAAAA . 140.0 35.0 188.0 0.0 . 331 . . Atlas-SNP WNK2 65268 hgsc.bcm.edu hg19 9 96079837 96079837 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WNK2 NM_006648 exon28 c.T6552C p.R2184R GCCACGTCTGCCC . 96.0 4.0 131.0 0.0 . 277 . . Atlas-SNP PTPDC1 138639 hgsc.bcm.edu hg19 9 96827014 96827014 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPDC1 . . . . TCCAACAGACTAC . 46.0 4.0 78.0 0.0 . 134 . . Atlas-SNP HIATL1 84641 hgsc.bcm.edu hg19 9 97218607 97218607 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HIATL1 NM_032558 exon10 c.T1114C p.S372P GCAGAGTCAGATC . 84.0 4.0 112.0 0.0 . 31 . . Atlas-SNP ERCC6L2 375748 hgsc.bcm.edu hg19 9 98643510 98643510 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001010895 exon2 c.G439A p.G147R CTTTATGGACACT . 79.0 4.0 96.0 0.0 . . . . Atlas-SNP CCDC180 0 hgsc.bcm.edu hg19 9 100080840 100080840 + Missense_Mutation SNP G G T rs368120179 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d KIAA1529,colon,carcinoma,0,1 . NM_020893 exon10 c.G1187T p.R396L AAAGGCGGCTGAA . 26.0 2.0 36.0 0.0 . . . . Atlas-SNP C9orf156 51531 hgsc.bcm.edu hg19 9 100667081 100667081 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C9orf156 NM_016481 exon5 c.C1260A p.I420I CGGCTTGATCCTC . 106.0 6.0 122.0 0.0 . 35 . . Atlas-SNP TEX10 54881 hgsc.bcm.edu hg19 9 103090232 103090232 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TEX10 NM_001161584 exon8 c.A1647G p.K549K TAACACTTTACTA . 113.0 5.0 113.0 0.0 . 99 . . Atlas-SNP CYLC2 1539 hgsc.bcm.edu hg19 9 105767096 105767096 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CYLC2,NS,carcinoma,0,1 CYLC2 NM_001340 exon4 c.A300G p.K100K TCTCAAACCAACT . 46.0 2.0 65.0 0.0 . 109 . . Atlas-SNP SMC2 10592 hgsc.bcm.edu hg19 9 106877083 106877083 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SMC2L1,NS,carcinoma,0,2 SMC2 NM_006444 exon13 c.A1644G p.R548R AGAACGACTCTAC . 81.0 4.0 99.0 2.0 . 127 . . Atlas-SNP OR13D1 286365 hgsc.bcm.edu hg19 9 107457666 107457666 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR13D1 NM_001004484 exon1 c.T964C p.Y322H ATCATCTATAGCC . 90.0 4.0 137.0 0.0 . 42 . . Atlas-SNP RAD23B 5887 hgsc.bcm.edu hg19 9 110045933 110045933 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RAD23B NM_002874 exon1 c.T23C p.L8P AGACCCTCCAGCA . 39.0 4.0 76.0 0.0 . 31 . . Atlas-SNP IKBKAP 8518 hgsc.bcm.edu hg19 9 111665171 111665171 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IKBKAP NM_003640 exon16 c.T1802C p.V601A AACCGAACAGGAA . 120.0 6.0 175.0 0.0 . 122 . . Atlas-SNP IKBKAP 8518 hgsc.bcm.edu hg19 9 111685163 111685163 + Missense_Mutation SNP G G A rs202179488 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IKBKAP NM_003640 exon6 c.C511T p.H171Y ATCCATGGAACTG . 100.0 4.0 110.0 0.0 . 122 . G|0.999;C|0.001 Atlas-SNP EPB41L4B 54566 hgsc.bcm.edu hg19 9 112013790 112013790 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EPB41L4B NM_019114 exon13 c.A1281G p.A427A GTTGCTTGCTATA . 121.0 5.0 135.0 0.0 . 111 . . Atlas-SNP PALM2-AKAP2 445815 hgsc.bcm.edu hg19 9 112899145 112899145 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PALM2-AKAP2 NM_007203 exon8 c.A1321G p.R441G AAAGTGAGGCCTT . 93.0 4.0 130.0 0.0 . 117 . . Atlas-SNP KIAA0368 23392 hgsc.bcm.edu hg19 9 114172333 114172333 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA0368 NM_001080398 exon24 c.A3072G p.K1024K TGTTTCTTTACTG . 122.0 5.0 109.0 0.0 . 144 . . Atlas-SNP C9orf84 158401 hgsc.bcm.edu hg19 9 114480520 114480520 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C9orf84 NM_173521 exon14 c.A1988G p.H663R AGAAGATGTAAGA . 80.0 4.0 133.0 0.0 . 207 . . Atlas-SNP PRPF4 9128 hgsc.bcm.edu hg19 9 116053881 116053881 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRPF4 NM_004697 exon14 c.G1510A p.G504R TCCGATGGGCAGC . 78.0 4.0 135.0 0.0 . 56 . . Atlas-SNP COL27A1 85301 hgsc.bcm.edu hg19 9 117068856 117068856 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . COL27A1 NM_032888 exon58 c.C4995A p.T1665T TAAAACCTTACAC . 84.0 4.0 77.0 0.0 . 200 . . Atlas-SNP FBXW2 26190 hgsc.bcm.edu hg19 9 123526947 123526947 + Missense_Mutation SNP C C T rs374464211 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FBXW2 NM_012164 exon8 c.G1255A p.E419K ATGCTTCGCCTGC . 95.0 5.0 115.0 0.0 . 34 . . Atlas-SNP FBXW2 26190 hgsc.bcm.edu hg19 9 123526956 123526956 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FBXW2 NM_012164 exon8 c.C1246A p.L416M CTGCCAGGAAGCT . 96.0 4.0 105.0 0.0 . 34 . . Atlas-SNP PHF19 26147 hgsc.bcm.edu hg19 9 123636996 123636996 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PHF19 NM_015651 exon2 c.A24G p.P8P AGTCCCTGGATCC . 63.0 4.0 58.0 0.0 . 47 . . Atlas-SNP SCAI 286205 hgsc.bcm.edu hg19 9 127781126 127781126 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SCAI NM_173690 exon10 c.A882G p.G294G CAACTGTCCCACA . 82.0 4.0 105.0 0.0 . 84 . . Atlas-SNP FAM129B 64855 hgsc.bcm.edu hg19 9 130272586 130272586 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAM129B NM_022833 exon9 c.T1000C p.C334R GCACGCACACCTC . 66.0 4.0 108.0 0.0 . 84 . . Atlas-SNP C9orf117 286207 hgsc.bcm.edu hg19 9 130473684 130473684 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C9orf117 NM_001012502 exon4 c.T764C p.L255P AGCAGCTCAAGGG . 70.0 4.0 121.0 0.0 . 21 . . Atlas-SNP LCN2 3934 hgsc.bcm.edu hg19 9 130911932 130911932 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LCN2 NM_005564 exon1 c.A128G p.Q43R ACTTCCAGGACAA . 99.0 5.0 110.0 0.0 . 12 . . Atlas-SNP SPTAN1 6709 hgsc.bcm.edu hg19 9 131337065 131337065 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPTAN1 NM_003127 exon4 c.G475T p.E159X GAATGTGAGGACG . 100.0 4.0 124.0 0.0 . 266 . . Atlas-SNP NUP188 23511 hgsc.bcm.edu hg19 9 131765691 131765691 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NUP188 NM_015354 exon38 c.G4392T p.K1464N CATGAAGGAGTGG . 46.0 4.0 67.0 0.0 . 140 . . Atlas-SNP USP20 10868 hgsc.bcm.edu hg19 9 132642472 132642472 + Missense_Mutation SNP C C A rs200854092 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP20 NM_001008563 exon25 c.C2665A p.R889S GCCATCCGCCAGA . 50.0 4.0 112.0 0.0 . 186 . C|1.000;T|0.000 Atlas-SNP NUP214 8021 hgsc.bcm.edu hg19 9 134049687 134049687 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NUP214 NM_005085 exon22 c.G3139A p.G1047S TCACCTGGTGTGA . 93.0 4.0 153.0 0.0 . 166 . . Atlas-SNP SETX 23064 hgsc.bcm.edu hg19 9 135218087 135218087 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SETX NM_015046 exon5 c.C488A p.P163H TCATTGGGATGGA . 74.0 5.0 104.0 0.0 . 234 . . Atlas-SNP TSC1 7248 hgsc.bcm.edu hg19 9 135779080 135779080 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TSC1 NM_000368 exon17 c.G2166T p.K722N GATCACCTTGCGG . 82.0 33.0 94.0 0.0 . 167 . . Atlas-SNP GBGT1 26301 hgsc.bcm.edu hg19 9 136029419 136029419 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d .,1 GBGT1 NM_021996 exon7 c.C589A p.R197R CCTCCCGGTGAGC . 99.0 4.0 114.0 0.0 . 25 . . Atlas-SNP GBGT1 26301 hgsc.bcm.edu hg19 9 136031411 136031411 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GBGT1 NM_021996 exon4 c.C179A p.P60H ACCACGGGCTGGA . 83.0 4.0 149.0 0.0 . 25 . . Atlas-SNP CACFD1 11094 hgsc.bcm.edu hg19 9 136328625 136328625 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CACFD1 NM_001242370 exon2 c.T142C p.F48L GGCCTCTTCAACT . 93.0 4.0 119.0 0.0 . 1 . . Atlas-SNP GPSM1 26086 hgsc.bcm.edu hg19 9 139250846 139250846 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPSM1 NM_001145638 exon13 c.C1665T p.I555I CCTCATCGCCAGC . 65.0 19.0 76.0 0.0 . 50 . . Atlas-SNP SEC16A 9919 hgsc.bcm.edu hg19 9 139370230 139370230 + Missense_Mutation SNP G G T rs371898934 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SEC16A NM_014866 exon3 c.C1838A p.P613Q TTTACCGGTTCGA . 51.0 4.0 84.0 0.0 . 249 . . Atlas-SNP GRIN1 2902 hgsc.bcm.edu hg19 9 140036523 140036523 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GRIN1 NM_000832 exon2 c.C317T p.P106L CCACCCCTGTCTC . 191.0 32.0 287.0 0.0 . 51 . . Atlas-SNP ANAPC2 29882 hgsc.bcm.edu hg19 9 140077667 140077667 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANAPC2 NM_013366 exon6 c.T1196C p.L399P ATATAGAGGGTGA . 93.0 5.0 136.0 0.0 . 57 . . Atlas-SNP ANAPC2 29882 hgsc.bcm.edu hg19 9 140082090 140082090 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANAPC2 NM_013366 exon2 c.A583G p.T195A GGTCTGTGCCCCC . 95.0 4.0 148.0 0.0 . 57 . . Atlas-SNP TOR4A 54863 hgsc.bcm.edu hg19 9 140173587 140173587 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_017723 exon2 c.A446G p.D149G GCTATGACCTCGA . 67.0 4.0 97.0 0.0 . . . . Atlas-SNP AKR1E2 83592 hgsc.bcm.edu hg19 10 4879675 4879675 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AKR1E2 NM_001040177 exon5 c.G484T p.G162W ATCACCGGGCTGG . 81.0 4.0 98.0 0.0 . 30 . . Atlas-SNP ITIH2 3698 hgsc.bcm.edu hg19 10 7751027 7751027 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ITIH2 NM_002216 exon4 c.T235C p.S79P GTCCAGTCTACTA . 91.0 4.0 107.0 0.0 . 144 . . Atlas-SNP NUDT5 11164 hgsc.bcm.edu hg19 10 12219831 12219831 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d NUDT5,caecum,carcinoma,0,1 NUDT5 NM_014142 exon5 c.C250A p.R84R GTGGTCGGAACTG . 54.0 4.0 91.0 0.0 . 10 . . Atlas-SNP NUDT5 11164 hgsc.bcm.edu hg19 10 12219892 12219892 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NUDT5 NM_014142 exon5 c.G189T p.A63A GATGACCGCGACA . 48.0 4.0 57.0 0.0 . 10 . . Atlas-SNP FAM188A 80013 hgsc.bcm.edu hg19 10 15821138 15821138 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAM188A NM_024948 exon15 c.C1191A p.V397V GTACATGACCTGT . 69.0 4.0 112.0 0.0 . 44 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17127716 17127716 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CUBN NM_001081 exon16 c.T1990C p.F664L TGCAGAACTTCCC . 87.0 4.0 152.0 0.0 . 515 . . Atlas-SNP STAM 8027 hgsc.bcm.edu hg19 10 17747603 17747603 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d STAM,colon,carcinoma,0,1 STAM NM_003473 exon12 c.T1072C p.S358P GAACTCTCAGAAC . 59.0 3.0 82.0 0.0 . 60 . . Atlas-SNP ARL5B 221079 hgsc.bcm.edu hg19 10 18963040 18963040 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARL5B NM_178815 exon5 c.C467A p.S156Y TTCAATCCTGCTG . 64.0 4.0 85.0 0.0 . 12 . . Atlas-SNP NEBL 10529 hgsc.bcm.edu hg19 10 21104614 21104614 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NEBL NM_006393 exon22 c.C2181A p.T727T TAAAGTGGTAGCT . 92.0 4.0 139.0 0.0 . 199 . . Atlas-SNP MLLT10 8028 hgsc.bcm.edu hg19 10 21884283 21884283 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d MLLT10_ENST00000377072,colon,carcinoma,0,2 MLLT10 NM_001195626 exon4 c.C319T p.L107L TGTGCCCTGTATA . 98.0 5.0 128.0 0.0 . 183 . . Atlas-SNP PIP4K2A 5305 hgsc.bcm.edu hg19 10 22880591 22880591 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PIP4K2A NM_005028 exon4 c.C459A p.A153A CATTTCGGCCACG . 120.0 6.0 125.0 0.0 . 59 . . Atlas-SNP APBB1IP 54518 hgsc.bcm.edu hg19 10 26825148 26825148 + Splice_Site SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . APBB1IP NM_019043 exon10 c.1044+2T>C . CTAAGGTCAGAAA . 80.0 4.0 73.0 0.0 . 117 . . Atlas-SNP ZNF248 57209 hgsc.bcm.edu hg19 10 38126943 38126943 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF248 NM_001267597 exon4 c.C112A p.L38M TTTCCAGGATCAC . 96.0 4.0 148.0 0.0 . 61 . . Atlas-SNP ZNF33A 7581 hgsc.bcm.edu hg19 10 38343701 38343701 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF33A NM_006954 exon5 c.C649A p.H217N TTAGAGCACAATT . 118.0 5.0 142.0 0.0 . 103 . . Atlas-SNP ZNF33B 7582 hgsc.bcm.edu hg19 10 43088543 43088543 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF33B NM_006955 exon5 c.T1855C p.C619R TCTGGCAGAAGGT . 121.0 5.0 129.0 0.0 . 78 . . Atlas-SNP RASGEF1A 221002 hgsc.bcm.edu hg19 10 43698747 43698747 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RASGEF1A NM_145313 exon3 c.A320G p.K107R CTCACCTTTTCAG . 100.0 4.0 91.0 0.0 . 66 . . Atlas-SNP TMEM72 643236 hgsc.bcm.edu hg19 10 45429084 45429084 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMEM72 NM_001123376 exon4 c.210-1G>T . TCCCCAGGTGTCA . 52.0 4.0 63.0 0.0 . 25 . . Atlas-SNP C10orf71 118461 hgsc.bcm.edu hg19 10 50532329 50532329 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C10orf71 NM_001135196 exon3 c.C1739T p.P580L CTGACCCCAGTGA . 86.0 4.0 133.0 0.0 . 179 . . Atlas-SNP CHAT 1103 hgsc.bcm.edu hg19 10 50833615 50833615 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CHAT,NS,carcinoma,0,1 CHAT NM_020549 exon6 c.C849A p.P283P GCTCCCCGGCCAT . 71.0 4.0 108.0 0.0 . 162 . . Atlas-SNP OGDHL 55753 hgsc.bcm.edu hg19 10 50948862 50948862 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OGDHL NM_018245 exon16 c.T2034C p.H678H CTGGTCATGGAGA . 47.0 4.0 67.0 0.0 . 149 . . Atlas-SNP SGMS1 259230 hgsc.bcm.edu hg19 10 52066912 52066912 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SGMS1 NM_147156 exon11 c.A1232G p.N411S GTGTCATTCACCA . 149.0 6.0 223.0 0.0 . 40 . . Atlas-SNP A1CF 29974 hgsc.bcm.edu hg19 10 52619608 52619608 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . A1CF NM_138932 exon3 c.G93T p.L31F CTGGACCAAGCTA . 80.0 4.0 105.0 0.0 . 190 . . Atlas-SNP EGR2 1959 hgsc.bcm.edu hg19 10 64575711 64575711 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EGR2 NM_000399 exon1 c.C79A p.P27T CCACCGGGTAGAT . 122.0 5.0 178.0 0.0 . 77 . . Atlas-SNP STOX1 219736 hgsc.bcm.edu hg19 10 70645469 70645469 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STOX1 NM_152709 exon3 c.T1917C p.H639H TCCGCATAGTCTG . 54.0 4.0 60.0 0.0 . 75 . . Atlas-SNP PRF1 5551 hgsc.bcm.edu hg19 10 72357906 72357906 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRF1 NM_001083116 exon3 c.G1571T p.R524M AAGCACCTGGCAT . 79.0 6.0 88.0 0.0 . 64 . . Atlas-SNP PSAP 5660 hgsc.bcm.edu hg19 10 73585601 73585601 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PSAP NM_001042466 exon7 c.T770C p.M257T ATGTGCATCATCA . 88.0 4.0 102.0 0.0 . 43 . . Atlas-SNP SEC24C 9632 hgsc.bcm.edu hg19 10 75526220 75526220 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SEC24C NM_198597 exon12 c.T1720C p.S574P GTTGTGTCTGATG . 50.0 4.0 69.0 0.0 . 86 . . Atlas-SNP CAMK2G 818 hgsc.bcm.edu hg19 10 75602229 75602229 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CAMK2G NM_172170 exon11 c.G890T p.R297L TTTCTCCGGGCAT . 91.0 5.0 110.0 0.0 . 79 . . Atlas-SNP PLAU 5328 hgsc.bcm.edu hg19 10 75671984 75671984 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLAU NM_002658 exon4 c.T97C p.C33R TGTGACTGTCTAA . 93.0 4.0 94.0 0.0 . 47 . . Atlas-SNP MAT1A 4143 hgsc.bcm.edu hg19 10 82039957 82039957 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MAT1A NM_000429 exon5 c.C521A p.P174H AGCCAGGGGAGGA . 70.0 19.0 100.0 0.0 . 52 . . Atlas-SNP TSPAN14 81619 hgsc.bcm.edu hg19 10 82275975 82275975 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TSPAN14 NM_030927 exon8 c.G637T p.D213Y AAGTGGGATGAGT . 83.0 4.0 154.0 0.0 . 29 . . Atlas-SNP IFIT2 3433 hgsc.bcm.edu hg19 10 91066851 91066851 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IFIT2 NM_001547 exon2 c.T1138C p.F380L GGCAACTTTCAGC . 91.0 4.0 96.0 0.0 . 39 . . Atlas-SNP IDE 3416 hgsc.bcm.edu hg19 10 94291601 94291601 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IDE NM_004969 exon4 c.G565T p.E189X CATGTTCTGAATC . 76.0 5.0 114.0 0.0 . 77 . . Atlas-SNP HPS1 3257 hgsc.bcm.edu hg19 10 100182230 100182230 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HPS1 NM_000195 exon17 c.G1639A p.V547M GGTCCACATAGAT . 89.0 4.0 87.0 0.0 . 65 . . Atlas-SNP ABCC2 1244 hgsc.bcm.edu hg19 10 101567952 101567952 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCC2 NM_000392 exon13 c.G1781A p.S594N CCCTGAGCATGCT . 115.0 39.0 160.0 0.0 . 160 . . Atlas-SNP CPN1 1369 hgsc.bcm.edu hg19 10 101824984 101824984 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CPN1 NM_001308 exon4 c.C720A p.T240T GCTGGCGGTGCGG . 87.0 4.0 96.0 0.0 . 62 . . Atlas-SNP CHUK 1147 hgsc.bcm.edu hg19 10 101964400 101964400 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CHUK NM_001278 exon13 c.G1370T p.R457I TTATATCTAAGAA . 115.0 5.0 104.0 0.0 . 71 . . Atlas-SNP CHUK 1147 hgsc.bcm.edu hg19 10 101982628 101982628 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CHUK,NS,carcinoma,0,1 CHUK NM_001278 exon3 c.C310A p.R104R CCTTTCGGAGATC . 98.0 4.0 86.0 1.0 . 71 . . Atlas-SNP OBFC1 79991 hgsc.bcm.edu hg19 10 105652001 105652001 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OBFC1 NM_024928 exon8 c.A763G p.K255E CCTTCTTAAAATT . 93.0 4.0 77.0 0.0 . 33 . . Atlas-SNP VWA2 340706 hgsc.bcm.edu hg19 10 116045927 116045927 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VWA2 NM_001272046 exon11 c.C1227T p.S409S CTGGAGCCTCGAT . 85.0 4.0 159.0 0.0 . 64 . . Atlas-SNP BTBD16 118663 hgsc.bcm.edu hg19 10 124096039 124096039 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BTBD16 NM_144587 exon15 c.T1294C p.S432P TCTCCCTCTGCGG . 93.0 4.0 121.0 0.0 . 44 . . Atlas-SNP DMBT1 1755 hgsc.bcm.edu hg19 10 124380739 124380739 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d DMBT1_ENST00000368915,NS,carcinoma,0,3 DMBT1 NM_007329 exon41 c.G5064T p.S1688S CATGTCGGCCCCA . 49.0 3.0 102.0 1.0 . 677 . . Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134694527 134694527 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TTC40 NM_001200049 exon28 c.A3637G p.M1213V ACTCCATCTCAGG . 51.0 5.0 91.0 0.0 . 100 . . Atlas-SNP GPR123 84435 hgsc.bcm.edu hg19 10 134910585 134910585 + Silent SNP C C T rs62624493 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPR123 NM_001083909 exon3 c.C111T p.V37V CTTCGTCACCTAC . 36.0 8.0 35.0 0.0 . 118 . C|0.993;G|0.007 Atlas-SNP ADAM8 101 hgsc.bcm.edu hg19 10 135087474 135087474 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADAM8 NM_001164489 exon4 c.C287T p.T96M TGCTCCGTCACCT . 62.0 17.0 101.0 0.0 . 41 . . Atlas-SNP ECHS1 1892 hgsc.bcm.edu hg19 10 135182430 135182430 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ECHS1 NM_004092 exon4 c.C511A p.P171T TACCTGGGATGGT . 109.0 6.0 135.0 0.0 . 31 . . Atlas-SNP PHRF1 57661 hgsc.bcm.edu hg19 11 607103 607103 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PHRF1 NM_020901 exon14 c.C1644A p.S548S TCTGTCCAGAGGG . 85.0 4.0 93.0 0.0 . 188 . . Atlas-SNP OSBPL5 114879 hgsc.bcm.edu hg19 11 3143580 3143580 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OSBPL5 NM_145638 exon4 c.A298G p.K100E TCACCTTGAGAGT . 80.0 4.0 107.0 0.0 . 78 . . Atlas-SNP OR52A1 23538 hgsc.bcm.edu hg19 11 5173434 5173434 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR52A1 NM_012375 exon1 c.A166G p.S56G GGAGACTGCGCTC . 112.0 5.0 132.0 0.0 . 58 . . Atlas-SNP RRP8 23378 hgsc.bcm.edu hg19 11 6622399 6622399 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d RRP8,NS,adenocarcinoma,0,1 RRP8 NM_015324 exon3 c.C897A p.I299I CCTGGCGATGCGG . 41.0 2.0 54.0 1.0 . 40 . . Atlas-SNP DCHS1 8642 hgsc.bcm.edu hg19 11 6653382 6653382 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DCHS1 NM_003737 exon6 c.G3361A p.G1121R TGGTCCCTGGGGG . 112.0 5.0 128.0 0.0 . 277 . . Atlas-SNP NLRP14 338323 hgsc.bcm.edu hg19 11 7091661 7091661 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NLRP14 NM_176822 exon11 c.T3120C p.S1040S GAAGTCTCCTAAG . 96.0 4.0 139.0 0.0 . 187 . . Atlas-SNP OR10A3 26496 hgsc.bcm.edu hg19 11 7960614 7960614 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR10A3 NM_001003745 exon1 c.G454T p.G152W TGATCCCTGAGAT . 129.0 6.0 117.0 0.0 . 54 . . Atlas-SNP TRIM66 9866 hgsc.bcm.edu hg19 11 8642090 8642090 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRIM66 NM_014818 exon16 c.G3047A p.S1016N GTCAGGCTGCGGC . 132.0 34.0 167.0 0.0 . 45 . . Atlas-SNP DKK3 27122 hgsc.bcm.edu hg19 11 11988502 11988502 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DKK3 NM_001018057 exon5 c.A672G p.R224R CTCACCTCTCTGG . 129.0 6.0 232.0 0.0 . 35 . . Atlas-SNP TEAD1 7003 hgsc.bcm.edu hg19 11 12904610 12904610 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TEAD1 NM_021961 exon9 c.A637G p.T213A ATTGGCACAACCA . 97.0 4.0 137.0 0.0 . 40 . . Atlas-SNP ARNTL 406 hgsc.bcm.edu hg19 11 13408153 13408153 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARNTL NM_001030272 exon19 c.C1728A p.P576P GAACCCCCACATA . 72.0 4.0 103.0 0.0 . 46 . . Atlas-SNP C11orf58 10944 hgsc.bcm.edu hg19 11 16774369 16774369 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d C11orf58,bladder,carcinoma,+1,1 C11orf58 NM_014267 exon4 c.T246C p.S82S GGAGTCTCAATAT . 98.0 5.0 145.0 0.0 . 14 . . Atlas-SNP SAA2-SAA4 100528017 hgsc.bcm.edu hg19 11 18253136 18253136 + Silent SNP C C A rs201938371 by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SAA4,colon,carcinoma,0,1 . NM_001199744 exon6 c.G540T p.S180S GGACTTCGAGTCC . 111.0 28.0 169.0 0.0 . . . C|1.000;T|0.000 Atlas-SNP IGSF22 283284 hgsc.bcm.edu hg19 11 18732375 18732375 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IGSF22 NM_173588 exon16 c.A2399G p.E800G GGAGGCTCTGTGG . 132.0 6.0 137.0 0.0 . 211 . . Atlas-SNP LUZP2 338645 hgsc.bcm.edu hg19 11 24759781 24759781 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d LUZP2,colon,carcinoma,0,1 LUZP2 NM_001252010 exon4 c.C266G p.S89C TGAAGTCTCTTCA . 183.0 55.0 251.0 1.0 . 90 . . Atlas-SNP WT1 7490 hgsc.bcm.edu hg19 11 32452076 32452076 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WT1 NM_001198551 exon1 c.G10A p.G4S ACGAACCCTTCTC . 63.0 4.0 104.0 0.0 . 744 . . Atlas-SNP LDLRAD3 143458 hgsc.bcm.edu hg19 11 36250861 36250861 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LDLRAD3 NM_174902 exon6 c.A952G p.S318G GACACCAGCCACA . 90.0 4.0 127.0 0.0 . 52 . . Atlas-SNP ACCS 84680 hgsc.bcm.edu hg19 11 44089232 44089232 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ACCS,rectum,carcinoma,0,1 ACCS NM_032592 exon2 c.A55G p.T19A GGCCCCACCTGCA . 112.0 5.0 127.0 0.0 . 64 . . Atlas-SNP C11orf94 143678 hgsc.bcm.edu hg19 11 45928125 45928125 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C11orf94 NM_001080446 exon3 c.C292A p.L98I GTCATAGGTGTGC . 82.0 4.0 87.0 0.0 . 13 . . Atlas-SNP LRP4 4038 hgsc.bcm.edu hg19 11 46896443 46896443 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP4 NM_002334 exon28 c.C4137A p.V1379V AACAGGGACATGC . 114.0 31.0 134.0 0.0 . 160 . . Atlas-SNP PACSIN3 29763 hgsc.bcm.edu hg19 11 47199984 47199984 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PACSIN3 NM_016223 exon10 c.C1092A p.T364T AACCCCGGTGGCA . 87.0 4.0 155.0 0.0 . 28 . . Atlas-SNP MADD 8567 hgsc.bcm.edu hg19 11 47307982 47307982 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MADD NM_130470 exon15 c.2552-2A>G . CTTGATAGGCAGC . 69.0 4.0 102.0 0.0 . 172 . . Atlas-SNP TNKS1BP1 85456 hgsc.bcm.edu hg19 11 57069548 57069548 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNKS1BP1 NM_033396 exon8 c.G4834T p.E1612X CCCTACCTGTAGA . 82.0 4.0 94.0 0.0 . 148 . . Atlas-SNP P2RX3 5024 hgsc.bcm.edu hg19 11 57115686 57115686 + Missense_Mutation SNP G G T rs115850675 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . P2RX3 NM_002559 exon5 c.G434T p.R145L TGCTCCGGACCTG . 68.0 5.0 57.0 0.0 . 55 . G|0.996;A|0.004 Atlas-SNP MS4A13 503497 hgsc.bcm.edu hg19 11 60292725 60292725 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MS4A13 NM_001012417 exon5 c.A232T p.I78F ACTACAATTACTG . 373.0 126.0 409.0 0.0 . 27 . . Atlas-SNP PRPF19 27339 hgsc.bcm.edu hg19 11 60666657 60666657 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRPF19 NM_014502 exon11 c.C948A p.A316A GCCAGTGGCATGA . 77.0 4.0 110.0 0.0 . 62 . . Atlas-SNP TUT1 64852 hgsc.bcm.edu hg19 11 62346379 62346379 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TUT1 NM_022830 exon5 c.G928T p.D310Y CAGAATCCTGGGG . 91.0 4.0 140.0 0.0 . 122 . . Atlas-SNP HNRNPUL2 221092 hgsc.bcm.edu hg19 11 62488867 62488867 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HNRNPUL2 NM_001079559 exon9 c.A1511G p.D504G TTGGGGTCCATCT . 90.0 4.0 132.0 0.0 . 41 . . Atlas-SNP FLRT1 23769 hgsc.bcm.edu hg19 11 63884020 63884020 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FLRT1 NM_013280 exon2 c.A281G p.N94S AGATCAACAACGC . 61.0 5.0 65.0 0.0 . 46 . . Atlas-SNP STIP1 10963 hgsc.bcm.edu hg19 11 63962047 63962047 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STIP1 NM_006819 exon4 c.G458T p.R153L CCTACCGGGAGCT . 93.0 5.0 134.0 0.0 . 63 . . Atlas-SNP CDC42BPG 55561 hgsc.bcm.edu hg19 11 64599915 64599915 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CDC42BPG NM_017525 exon27 c.G3072A p.L1024L GCGTGGCAGGTCC . 75.0 4.0 119.0 0.0 . 101 . . Atlas-SNP MAP3K11 4296 hgsc.bcm.edu hg19 11 65373551 65373551 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MAP3K11 NM_002419 exon7 c.G1605A p.L535L AGGCTCCACTGCA . 58.0 4.0 48.0 0.0 . 67 . . Atlas-SNP KLC2 64837 hgsc.bcm.edu hg19 11 66031564 66031564 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLC2 NM_022822 exon8 c.G990T p.L330L CAACCTGGCCCTG . 142.0 18.0 118.0 0.0 . 50 . . Atlas-SNP BBS1 582 hgsc.bcm.edu hg19 11 66283057 66283057 + Missense_Mutation SNP G G T rs376894444 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BBS1 NM_024649 exon5 c.G479T p.R160L GCATCCGGTGAGA . 195.0 8.0 132.0 0.0 . 58 . . Atlas-SNP RBM14 10432 hgsc.bcm.edu hg19 11 66392658 66392658 + Silent SNP C C A rs375934305 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RBM14 NM_006328 exon2 c.C1311A p.A437A GCCAGCCACAGCT . 75.0 4.0 40.0 0.0 . 59 . . Atlas-SNP RBM14 10432 hgsc.bcm.edu hg19 11 66392968 66392968 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RBM14 NM_006328 exon2 c.C1621A p.R541S TCCTACCGCGGCC . 126.0 6.0 88.0 0.0 . 59 . . Atlas-SNP KDM2A 22992 hgsc.bcm.edu hg19 11 67017960 67017960 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KDM2A NM_012308 exon17 c.A2459G p.Q820R AGCTGCAGGCCAT . 85.0 4.0 107.0 0.0 . 80 . . Atlas-SNP ACY3 91703 hgsc.bcm.edu hg19 11 67410349 67410349 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ACY3 NM_080658 exon8 c.A806G p.D269G AGCAGGTCCTCCC . 91.0 4.0 73.0 0.0 . 27 . . Atlas-SNP TCIRG1 10312 hgsc.bcm.edu hg19 11 67818045 67818045 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TCIRG1 NM_006019 exon19 c.C2328A p.I776I CCCCATCTTTGCC . 386.0 167.0 433.0 1.0 . 40 . . Atlas-SNP SHANK2 22941 hgsc.bcm.edu hg19 11 70332784 70332784 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SHANK2 NM_133266 exon10 c.T1850C p.L617P CCTGTGAGTGGGT . 101.0 5.0 87.0 0.0 . 340 . . Atlas-SNP P2RY2 5029 hgsc.bcm.edu hg19 11 72946264 72946264 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . P2RY2 NM_176071 exon3 c.G1060T p.G354C GTGTTGGGCAGCA . 94.0 4.0 127.0 0.0 . 54 . . Atlas-SNP C2CD3 26005 hgsc.bcm.edu hg19 11 73796884 73796884 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C2CD3 NM_015531 exon21 c.G3689T p.G1230V TTGACCCCGACTG . 116.0 5.0 178.0 0.0 . 288 . . Atlas-SNP LIPT2 387787 hgsc.bcm.edu hg19 11 74203187 74203187 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LIPT2 NM_001144869 exon2 c.C689A p.P230H CAGTTGGGGCTGT . 95.0 4.0 117.0 0.0 . 5 . . Atlas-SNP PICALM 8301 hgsc.bcm.edu hg19 11 85701369 85701369 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PICALM NM_007166 exon13 c.T1332C p.S444S ATCACCACTACTT . 100.0 4.0 131.0 0.0 . 82 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92616016 92616016 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAT3 NM_001008781 exon23 c.T12394C p.Y4132H GGCCAGTACTGCG . 76.0 22.0 130.0 0.0 . 1822 . . Atlas-SNP HEPHL1 341208 hgsc.bcm.edu hg19 11 93844139 93844139 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HEPHL1 NM_001098672 exon18 c.C3116T p.A1039V TGTTTGCAGATCA . 91.0 4.0 112.0 0.0 . 144 . . Atlas-SNP CNTN5 53942 hgsc.bcm.edu hg19 11 100141826 100141826 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CNTN5 NM_001243270 exon17 c.C2167T p.P723S ATAGTCCCAGAAA . 70.0 4.0 89.0 0.0 . 324 . . Atlas-SNP BIRC2 329 hgsc.bcm.edu hg19 11 102221307 102221307 + Missense_Mutation SNP G G T rs144530384 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BIRC2 NM_001256163 exon2 c.G722T p.R241L AACACCGGAGGCA . 83.0 4.0 82.0 0.0 . 51 . G|1.000;A|0.000 Atlas-SNP TMEM123 114908 hgsc.bcm.edu hg19 11 102272281 102272281 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMEM123 NM_052932 exon4 c.G591A p.R197R TCGATACCGAATG . 90.0 5.0 108.0 0.0 . 16 . . Atlas-SNP KBTBD3 143879 hgsc.bcm.edu hg19 11 105924774 105924774 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KBTBD3 NM_152433 exon3 c.G642A p.M214I CAGTACCATTTCT . 92.0 4.0 88.0 0.0 . 59 . . Atlas-SNP CWF19L2 143884 hgsc.bcm.edu hg19 11 107263571 107263571 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CWF19L2 NM_152434 exon11 c.A1668G p.R556R CCATACTCTTCCA . 86.0 4.0 108.0 0.0 . 135 . . Atlas-SNP C11orf88 399949 hgsc.bcm.edu hg19 11 111385715 111385715 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C11orf88 NM_001100388 exon1 c.C206A p.P69H CGCGGCCCAGGAG . 65.0 5.0 74.0 0.0 . 37 . . Atlas-SNP PTS 5805 hgsc.bcm.edu hg19 11 112104184 112104184 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTS NM_000317 exon6 c.G344T p.W115L ATATCTGGGACAA . 93.0 5.0 114.0 0.0 . 7 . . Atlas-SNP USP28 57646 hgsc.bcm.edu hg19 11 113694377 113694377 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP28 NM_020886 exon12 c.T1233C p.C411C TCGAATACACTCT . 89.0 4.0 92.0 0.0 . 135 . . Atlas-SNP CADM1 23705 hgsc.bcm.edu hg19 11 115109361 115109361 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CADM1 NM_014333 exon3 c.A283G p.S95G ACCTGCTGTCCTT . 86.0 4.0 129.0 0.0 . 74 . . Atlas-SNP SIK3 23387 hgsc.bcm.edu hg19 11 116746722 116746722 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SIK3 NM_025164 exon9 c.T925C p.L309L ATCTTAATGACTA . 76.0 4.0 101.0 0.0 . 112 . . Atlas-SNP DSCAML1 57453 hgsc.bcm.edu hg19 11 117374691 117374691 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d DSCAML1,NS,carcinoma,0,1 DSCAML1 NM_020693 exon11 c.G2408A p.R803H TGGATGCGGCCAG . 134.0 40.0 194.0 0.0 . 286 . . Atlas-SNP DSCAML1 57453 hgsc.bcm.edu hg19 11 117392100 117392100 + Missense_Mutation SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DSCAML1 NM_020693 exon6 c.A1138T p.T380S TTGGTGTCAGGGT . 80.0 4.0 109.0 0.0 . 286 . . Atlas-SNP TMPRSS13 84000 hgsc.bcm.edu hg19 11 117780678 117780678 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMPRSS13 NM_001206790 exon8 c.G952T p.G318X TCAGTCCGCAGTC . 73.0 5.0 97.0 0.0 . 75 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118377325 118377325 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MLL NM_001197104 exon27 c.C10718T p.P3573L ACATTCCAGACCA . 51.0 4.0 104.0 0.0 . 548 . . Atlas-SNP HSPA8 3312 hgsc.bcm.edu hg19 11 122930222 122930222 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HSPA8 NM_006597 exon5 c.A1079G p.N360S CTCTTATTCAGTT . 122.0 12.0 146.0 0.0 . 168 . . Atlas-SNP OR10G8 219869 hgsc.bcm.edu hg19 11 123901212 123901212 + Nonsense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR10G8 NM_001004464 exon1 c.A883T p.K295X GAGGTGAAGAAAG . 201.0 63.0 284.0 0.0 . 132 . . Atlas-SNP OR8G5 219865 hgsc.bcm.edu hg19 11 124134976 124134976 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001005198 exon1 c.G254A p.G85E TGATTGGGCTCAG . 123.0 34.0 137.0 0.0 . . . . Atlas-SNP OR8B8 26493 hgsc.bcm.edu hg19 11 124310838 124310838 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR8B8 NM_012378 exon1 c.G144A p.L48L CCTTATCAGGGTT . 84.0 4.0 148.0 0.0 . 76 . . Atlas-SNP WNK1 65125 hgsc.bcm.edu hg19 12 988759 988759 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d WNK1,colon,carcinoma,0,1 WNK1 NM_018979 exon11 c.A2394G p.V798V GCCAGTACCAACT . 98.0 4.0 103.0 0.0 . 403 . . Atlas-SNP KCNA5 3741 hgsc.bcm.edu hg19 12 5153812 5153812 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNA5 NM_002234 exon1 c.C499T p.R167C TTCGACCGCAACC . 63.0 26.0 98.0 0.0 . 138 . . Atlas-SNP PIANP 196500 hgsc.bcm.edu hg19 12 6804636 6804636 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001244014 exon5 c.A787G p.M263V GGGGCATCCCAGG . 84.0 4.0 135.0 0.0 . . . . Atlas-SNP COPS7A 50813 hgsc.bcm.edu hg19 12 6833778 6833778 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . COPS7A . . . . CCTTGCAGCTCTG . 41.0 4.0 49.0 0.0 . 26 . . Atlas-SNP USP5 8078 hgsc.bcm.edu hg19 12 6968664 6968664 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP5 NM_003481 exon9 c.G1089T p.Q363H CTTCCAGAATGCC . 84.0 4.0 106.0 0.0 . 124 . . Atlas-SNP AICDA 57379 hgsc.bcm.edu hg19 12 8759503 8759503 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AICDA NM_020661 exon2 c.T114C p.S38S TGTAGCACTGTCA . 57.0 4.0 71.0 0.0 . 37 . . Atlas-SNP PHC1 1911 hgsc.bcm.edu hg19 12 9086863 9086863 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PHC1 NM_004426 exon10 c.A2042G p.E681G TTCCAGAAAAAGC . 84.0 4.0 58.0 0.0 . 67 . . Atlas-SNP TAS2R43 259289 hgsc.bcm.edu hg19 12 11244577 11244577 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TAS2R43 NM_176884 exon1 c.T252C p.A84A ATTATAAGCAGTA . 107.0 6.0 152.0 0.0 . 19 . . Atlas-SNP GSG1 83445 hgsc.bcm.edu hg19 12 13238130 13238130 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GSG1 NM_001080555 exon7 c.C794T p.T265I TTGAAGGTGGTGA . 99.0 4.0 172.0 0.0 . 62 . . Atlas-SNP PLEKHA5 54477 hgsc.bcm.edu hg19 12 19489449 19489449 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLEKHA5 NM_001256470 exon21 c.G2449T p.E817X TTTTAGGAATTGG . 87.0 4.0 72.0 0.0 . 198 . . Atlas-SNP PDE3A 5139 hgsc.bcm.edu hg19 12 20769196 20769196 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d PDE3A,lower_third,carcinoma,0,1 PDE3A NM_000921 exon4 c.G1302T p.L434F CTTGTTGAGACGA . 39.0 3.0 49.0 0.0 . 184 . . Atlas-SNP ABCC9 10060 hgsc.bcm.edu hg19 12 21962812 21962812 + Missense_Mutation SNP A A G rs144125604 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCC9 NM_005691 exon35 c.T4289C p.M1430T TTGACCATATTCT . 45.0 4.0 60.0 0.0 . 411 . A|1.000;G|0.000 Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26732975 26732975 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ITPR2 NM_002223 exon33 c.T4494A p.N1498K GGTACTATTGTCT . 124.0 5.0 99.0 0.0 . 270 . . Atlas-SNP STK38L 23012 hgsc.bcm.edu hg19 12 27475143 27475143 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STK38L NM_015000 exon13 c.C1243T p.P415S GACTTCCCTGAAT . 58.0 5.0 75.0 0.0 . 44 . . Atlas-SNP SLC2A13 114134 hgsc.bcm.edu hg19 12 40158289 40158289 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC2A13 NM_052885 exon9 c.C1693T p.H565Y CTGTGTGTAAAAA . 89.0 4.0 158.0 0.0 . 91 . . Atlas-SNP ANO6 196527 hgsc.bcm.edu hg19 12 45742051 45742051 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANO6 NM_001204803 exon6 c.A649T p.I217L TTTTACATAGTTG . 213.0 16.0 275.0 0.0 . 163 . . Atlas-SNP SENP1 29843 hgsc.bcm.edu hg19 12 48491823 48491823 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SENP1 NM_001267594 exon3 c.C89T p.P30L GTTTGTGGCAGGA . 73.0 4.0 106.0 0.0 . 44 . . Atlas-SNP SENP1 29843 hgsc.bcm.edu hg19 12 48491866 48491866 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SENP1 NM_001267594 exon3 c.A46G p.T16A CTAAAGTCACTTC . 81.0 4.0 117.0 0.0 . 44 . . Atlas-SNP CACNB3 784 hgsc.bcm.edu hg19 12 49221409 49221409 + Silent SNP C C T rs191174951 by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CACNB3 NM_000725 exon13 c.C1182T p.P394P CTCCCCCCTTGAG . 51.0 4.0 91.0 0.0 . 51 . C|1.000;A|0.000 Atlas-SNP SPATS2 65244 hgsc.bcm.edu hg19 12 49854820 49854820 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPATS2 NM_023071 exon3 c.G25T p.D9Y CAGAAGGGTAAGA . 211.0 9.0 272.0 0.0 . 43 . . Atlas-SNP LARP4 113251 hgsc.bcm.edu hg19 12 50822725 50822725 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LARP4 NM_001170808 exon3 c.A174G p.A58A TAATGCAGAGCTC . 86.0 4.0 85.0 0.0 . 58 . . Atlas-SNP KRT75 9119 hgsc.bcm.edu hg19 12 52826983 52826983 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KRT75 NM_004693 exon2 c.G552T p.L184L CTCCTGCAGGAGG . 69.0 4.0 100.0 0.0 . 75 . . Atlas-SNP KRT79 338785 hgsc.bcm.edu hg19 12 53217754 53217754 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KRT79 NM_175834 exon6 c.C1063A p.L355M CCCGCAGGTTGTC . 87.0 4.0 140.0 0.0 . 78 . . Atlas-SNP AAAS 8086 hgsc.bcm.edu hg19 12 53701649 53701649 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AAAS NM_015665 exon15 c.A1396G p.K466E CCCCTTTGTTGAA . 100.0 4.0 101.0 0.0 . 46 . . Atlas-SNP NFE2 4778 hgsc.bcm.edu hg19 12 54686181 54686181 + Missense_Mutation SNP T T C rs373651500 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NFE2 NM_001261461 exon4 c.A1099G p.T367A TCTTGGTCCCCCG . 121.0 5.0 130.0 0.0 . 28 . . Atlas-SNP GPR84 53831 hgsc.bcm.edu hg19 12 54757304 54757304 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPR84 NM_020370 exon2 c.T332C p.L111P AGGCAGAGGGTCA . 98.0 4.0 96.0 0.0 . 38 . . Atlas-SNP OR6C4 341418 hgsc.bcm.edu hg19 12 55945361 55945361 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR6C4 NM_001005494 exon1 c.T351C p.S117S CATGTCTTATGAT . 120.0 6.0 137.0 0.0 . 34 . . Atlas-SNP DNAJC14 85406 hgsc.bcm.edu hg19 12 56221087 56221087 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DNAJC14 NM_032364 exon2 c.C1356A p.A452A TGCTGTGGCCTCA . 83.0 4.0 111.0 0.0 . 52 . . Atlas-SNP MMP19 4327 hgsc.bcm.edu hg19 12 56234506 56234506 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MMP19 NM_001272101 exon4 c.C465A p.R155R GGAGAGGCGGATG . 89.0 4.0 98.0 0.0 . 61 . . Atlas-SNP ERBB3 2065 hgsc.bcm.edu hg19 12 56487950 56487950 + Missense_Mutation SNP G G T rs202048840 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ERBB3 NM_001982 exon14 c.G1681T p.G561C ATGGAGGGCACTG . 52.0 4.0 68.0 0.0 . 350 . G|0.999;A|0.001 Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57573622 57573622 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP1 NM_002332 exon30 c.C5024G p.T1675R TCTGGACAAGCTA . 72.0 16.0 89.0 0.0 . 428 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57592334 57592334 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRP1 NM_002332 exon60 c.C9557A p.T3186N TGGACACCAAGAT . 84.0 4.0 65.0 0.0 . 428 . . Atlas-SNP SHMT2 6472 hgsc.bcm.edu hg19 12 57627867 57627867 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SHMT2 NM_005412 exon11 c.T1361C p.I454T TCAACATTGGCTT . 94.0 5.0 98.0 0.0 . 40 . . Atlas-SNP HELB 92797 hgsc.bcm.edu hg19 12 66698763 66698763 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HELB NM_033647 exon2 c.G440T p.W147L TAACATGGGTAAA . 100.0 5.0 164.0 0.0 . 90 . . Atlas-SNP HELB 92797 hgsc.bcm.edu hg19 12 66725244 66725244 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HELB NM_033647 exon12 c.T2981C p.M994T ACGCCATGACAAA . 85.0 4.0 81.0 0.0 . 90 . . Atlas-SNP HELB 92797 hgsc.bcm.edu hg19 12 66731843 66731843 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HELB NM_033647 exon13 c.C3225A p.P1075P AATTCCCAGGCAA . 98.0 4.0 140.0 0.0 . 90 . . Atlas-SNP LGR5 8549 hgsc.bcm.edu hg19 12 71976289 71976289 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LGR5 NM_003667 exon17 c.C1606A p.L536I AAAGCCCTTCATT . 114.0 5.0 161.0 0.0 . 103 . . Atlas-SNP ZFC3H1 196441 hgsc.bcm.edu hg19 12 72057219 72057219 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZFC3H1,NS,carcinoma,0,1 ZFC3H1 NM_144982 exon1 c.C172A p.P58T AGTGAGGAGGCCT . 43.0 2.0 70.0 0.0 . 172 . . Atlas-SNP TPH2 121278 hgsc.bcm.edu hg19 12 72416258 72416258 + Missense_Mutation SNP C C A rs371065822 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TPH2 NM_173353 exon9 c.C1148A p.S383Y TTTCCTCCATTGG . 74.0 4.0 111.0 0.0 . 81 . . Atlas-SNP CAPS2 84698 hgsc.bcm.edu hg19 12 75683540 75683540 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CAPS2 NM_032606 exon15 c.A1313G p.K438R TGTAGTTTTTCTT . 98.0 4.0 107.0 0.0 . 96 . . Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78513068 78513068 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NAV3 NM_014903 exon15 c.G3092T p.G1031V TAAAAGGATCATC . 83.0 4.0 98.0 0.0 . 506 . . Atlas-SNP PAWR 5074 hgsc.bcm.edu hg19 12 80007382 80007382 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PAWR NM_002583 exon4 c.C656A p.P219H GTTCTAGGTGGCT . 98.0 6.0 137.0 0.0 . 14 . . Atlas-SNP TMTC2 160335 hgsc.bcm.edu hg19 12 83526015 83526015 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMTC2 NM_152588 exon12 c.A2358G p.G786G CCTGGGAGCCATT . 124.0 5.0 139.0 0.0 . 100 . . Atlas-SNP ATP2B1 490 hgsc.bcm.edu hg19 12 90015326 90015326 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATP2B1 NM_001001323 exon9 c.G1587T p.L529F CCTTACCAATATT . 81.0 4.0 115.0 0.0 . 191 . . Atlas-SNP APAF1 317 hgsc.bcm.edu hg19 12 99056270 99056270 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . APAF1 NM_181868 exon6 c.G747T p.W249C CTCTTGGGTGTTG . 122.0 5.0 173.0 0.0 . 111 . . Atlas-SNP MYBPC1 4604 hgsc.bcm.edu hg19 12 102067212 102067212 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYBPC1 NM_206819 exon25 c.C2621T p.P874L GAAAACCAAGACC . 92.0 4.0 113.0 0.0 . 235 . . Atlas-SNP KIAA1033 23325 hgsc.bcm.edu hg19 12 105534742 105534742 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA1033 NM_015275 exon17 c.G1626T p.L542F AGTTTTGGCTGAA . 103.0 5.0 162.0 0.0 . 83 . . Atlas-SNP TCP11L2 255394 hgsc.bcm.edu hg19 12 106740234 106740234 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TCP11L2 NM_152772 exon10 c.G1486T p.A496S TTTTATGCAAATA . 69.0 4.0 109.0 0.0 . 59 . . Atlas-SNP RIC8B 55188 hgsc.bcm.edu hg19 12 107209055 107209055 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d RIC8B_ENST00000355478,NS,carcinoma,0,2 RIC8B NM_018157 exon3 c.G714T p.T238T TGTGACGGTAGAC . 45.0 3.0 90.0 0.0 . 51 . . Atlas-SNP DAO 1610 hgsc.bcm.edu hg19 12 109278816 109278816 + Missense_Mutation SNP G G T rs373913310 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d DAO,caecum,carcinoma,0,2 DAO NM_001917 exon2 c.G34T p.G12W GTCATCGGGCTGT . 86.0 4.0 54.0 0.0 . 58 . . Atlas-SNP ACACB 32 hgsc.bcm.edu hg19 12 109660331 109660331 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ACACB NM_001093 exon24 c.A3584G p.D1195G GCCCAGACCCTTC . 88.0 4.0 132.0 0.0 . 330 . . Atlas-SNP TCHP 84260 hgsc.bcm.edu hg19 12 110340853 110340853 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TCHP NM_001143852 exon2 c.T22C p.S8P CTGCCGTCCTACT . 87.0 4.0 149.0 0.0 . 45 . . Atlas-SNP OAS1 4938 hgsc.bcm.edu hg19 12 113357204 113357204 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OAS1 NM_016816 exon6 c.A1049G p.N350S AAAGCAACAGTGC . 92.0 5.0 93.0 0.0 . 128 . . Atlas-SNP LHX5 64211 hgsc.bcm.edu hg19 12 113901182 113901182 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LHX5 NM_022363 exon5 c.T1022C p.F341S TCGGTGAACCTGG . 88.0 6.0 118.0 0.0 . 39 . . Atlas-SNP CIT 11113 hgsc.bcm.edu hg19 12 120151337 120151337 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CIT NM_001206999 exon34 c.C4423A p.P1475T GACCTGGGGAGTT . 119.0 5.0 149.0 0.0 . 535 . . Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120572406 120572406 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GCN1L1 NM_006836 exon52 c.A7133G p.H2378R TTAATGTGGATGG . 95.0 5.0 145.0 0.0 . 207 . . Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120600885 120600885 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GCN1L1 NM_006836 exon19 c.A2027G p.H676R GATGGGTGGTGGG . 92.0 4.0 108.0 0.0 . 207 . . Atlas-SNP MSI1 4440 hgsc.bcm.edu hg19 12 120795696 120795696 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d MSI1,NS,carcinoma,0,1 MSI1 NM_002442 exon8 c.G457T p.G153W CAAACCCGAACCC . 85.0 5.0 140.0 1.0 . 40 . . Atlas-SNP P2RX4 5025 hgsc.bcm.edu hg19 12 121648016 121648016 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . P2RX4 NM_001261398 exon1 c.A49G p.T17A TACGACACGCCGC . 93.0 4.0 72.0 0.0 . 27 . . Atlas-SNP CAMKK2 10645 hgsc.bcm.edu hg19 12 121701741 121701741 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CAMKK2 NM_153500 exon6 c.T627C p.R209R AGGGCGACCTGAA . 76.0 4.0 62.0 0.0 . 87 . . Atlas-SNP SETD1B 23067 hgsc.bcm.edu hg19 12 122257551 122257551 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SETD1B NM_015048 exon11 c.G3531T p.P1177P GGCCCCGGGGGCA . 79.0 4.0 106.0 0.0 . 105 . . Atlas-SNP SETD1B 23067 hgsc.bcm.edu hg19 12 122261465 122261465 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SETD1B NM_015048 exon12 c.C4851A p.P1617P CTCGCCCGAACTC . 81.0 4.0 68.0 0.0 . 105 . . Atlas-SNP LRRC43 254050 hgsc.bcm.edu hg19 12 122669301 122669301 + Missense_Mutation SNP G G T rs372181783 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LRRC43 NM_001098519 exon2 c.G386T p.R129L ACTTCCGGTCCCT . 144.0 6.0 192.0 0.0 . 105 . . Atlas-SNP SFSWAP 6433 hgsc.bcm.edu hg19 12 132283969 132283969 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SFSWAP NM_001261411 exon19 c.A2948G p.D983G CACAGGATCTCAT . 81.0 4.0 140.0 0.0 . 69 . . Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132549272 132549272 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EP400 NM_015409 exon48 c.A8394G p.P2798P ACCGCCACAGGCC . 73.0 4.0 100.0 0.0 . 370 . . Atlas-SNP ZNF10 7556 hgsc.bcm.edu hg19 12 133732852 133732852 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF10 NM_015394 exon5 c.G1020T p.Q340H TCATCAGAGAACT . 75.0 4.0 100.0 0.0 . 58 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23908202 23908202 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SACS NM_014363 exon10 c.T9813C p.V3271V ATCAACAACAATG . 84.0 4.0 98.0 0.0 . 871 . . Atlas-SNP SLC46A3 283537 hgsc.bcm.edu hg19 13 29286871 29286871 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC46A3 NM_181785 exon3 c.A1006G p.M336V CTGTCATCGTGGT . 112.0 5.0 154.0 0.0 . 86 . . Atlas-SNP STARD13 90627 hgsc.bcm.edu hg19 13 33681005 33681005 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STARD13 NM_178006 exon13 c.A3114G p.E1038E CTGGGCTTCCTCA . 97.0 4.0 132.0 0.0 . 100 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 36239245 36239245 + Missense_Mutation SNP G G A rs368581341 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NBEA NM_015678 exon55 c.G8323A p.V2775I AGAGCCGTCCTCA . 177.0 53.0 282.0 0.0 . 340 . . Atlas-SNP KBTBD7 84078 hgsc.bcm.edu hg19 13 41768100 41768100 + Missense_Mutation SNP G G T rs138677495 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KBTBD7 NM_032138 exon1 c.C294A p.S98R GAACATGCTCTTG . 99.0 4.0 153.0 0.0 . 60 . G|1.000;A|0.000 Atlas-SNP COG3 83548 hgsc.bcm.edu hg19 13 46085936 46085936 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . COG3 NM_031431 exon16 c.T1756C p.S586P GCATTGTCTGCCT . 91.0 5.0 105.0 0.0 . 52 . . Atlas-SNP INTS6 26512 hgsc.bcm.edu hg19 13 51961531 51961531 + Silent SNP C C A rs142545429 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d INTS6,NS,carcinoma,-1,1 INTS6 NM_012141 exon7 c.G885T p.S295S TGTTGGCGAATTT . 57.0 3.0 68.0 0.0 . 72 . C|1.000;T|0.000 Atlas-SNP ATP7B 540 hgsc.bcm.edu hg19 13 52539142 52539142 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATP7B NM_000053 exon5 c.G1735A p.V579I TGTGGACACAGGA . 88.0 4.0 108.0 0.0 . 123 . . Atlas-SNP PCDH20 64881 hgsc.bcm.edu hg19 13 61987996 61987996 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCDH20 NM_022843 exon2 c.G236T p.G79V AGCACCCCCGCGG . 83.0 4.0 102.0 0.0 . 265 . . Atlas-SNP KLF12 11278 hgsc.bcm.edu hg19 13 74420058 74420058 + Silent SNP C C A rs200955639 by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLF12 NM_007249 exon4 c.G576T p.S192S AGGCACCGACTGT . 137.0 7.0 166.0 0.0 . 42 . C|1.000;T|0.000 Atlas-SNP POU4F1 5457 hgsc.bcm.edu hg19 13 79175920 79175920 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . POU4F1 NM_006237 exon2 c.A890G p.K297R GGGATCTTGAGGT . 91.0 4.0 126.0 0.0 . 43 . . Atlas-SNP DOCK9 23348 hgsc.bcm.edu hg19 13 99536145 99536145 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DOCK9 NM_001130049 exon22 c.T2394C p.G798G TTCCGGACCATAA . 72.0 4.0 73.0 0.0 . 311 . . Atlas-SNP COL4A1 1282 hgsc.bcm.edu hg19 13 110831299 110831299 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . COL4A1 NM_001845 exon31 c.C2429A p.P810H CCTCCAGGGGGAC . 52.0 4.0 69.0 0.0 . 372 . . Atlas-SNP COL4A2 1284 hgsc.bcm.edu hg19 13 111144454 111144454 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . COL4A2 NM_001846 exon38 c.A3492G p.G1164G GCAGGGAGAGCTG . 57.0 4.0 84.0 0.0 . 178 . . Atlas-SNP TUBGCP3 10426 hgsc.bcm.edu hg19 13 113174218 113174218 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TUBGCP3 NM_006322 exon15 c.G1863A p.L621L CACGTCCAGCCTT . 92.0 4.0 97.0 0.0 . 74 . . Atlas-SNP ATP11A 23250 hgsc.bcm.edu hg19 13 113512575 113512575 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATP11A NM_032189 exon22 c.T2638C p.S880P AGGATCTCTGAGC . 121.0 5.0 168.0 0.0 . 225 . . Atlas-SNP RASA3 22821 hgsc.bcm.edu hg19 13 114780788 114780788 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RASA3 NM_007368 exon14 c.G1302A p.V434V GCGGTCCACATAC . 59.0 4.0 81.0 0.0 . 83 . . Atlas-SNP CDC16 8881 hgsc.bcm.edu hg19 13 115002339 115002339 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CDC16 NM_003903 exon3 c.G169T p.A57S AGAGCCGCCCATG . 90.0 4.0 116.0 0.0 . 50 . . Atlas-SNP OR4K14 122740 hgsc.bcm.edu hg19 14 20483233 20483233 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OR4K14 NM_001004712 exon1 c.G120T p.L40L GTTACCCAGCATA . 224.0 78.0 296.0 0.0 . 86 . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20848600 20848600 + Silent SNP G G T rs200043242 by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d TEP1,bladder,carcinoma,0,1 TEP1 NM_007110 exon34 c.C4797A p.P1599P AGCCTCGGGGAGC . 54.0 4.0 70.0 0.0 . 224 . G|1.000;A|0.000 Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20872802 20872802 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TEP1 NM_007110 exon5 c.T1000C p.S334P AGTCAGAAGGCAG . 92.0 4.0 114.0 0.0 . 224 . . Atlas-SNP KLHL33 123103 hgsc.bcm.edu hg19 14 20898426 20898426 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLHL33 NM_001109997 exon2 c.T409C p.F137L CCACAAAGGCCTC . 95.0 4.0 116.0 0.0 . 37 . . Atlas-SNP RNASE1 6035 hgsc.bcm.edu hg19 14 21270132 21270132 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RNASE1 NM_198235 exon3 c.G96T p.R32R CTTGGCCCGGGAT . 96.0 4.0 92.0 0.0 . 14 . . Atlas-SNP ARHGEF40 55701 hgsc.bcm.edu hg19 14 21547122 21547122 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ARHGEF40,NS,carcinoma,0,1 ARHGEF40 NM_018071 exon11 c.C2326A p.H776N AACCTGCACGTGC . 56.0 3.0 60.0 0.0 . 84 . . Atlas-SNP OXA1L 5018 hgsc.bcm.edu hg19 14 23237290 23237290 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OXA1L NM_005015 exon3 c.G529T p.G177W GGGCTGGGGTCAT . 68.0 4.0 113.0 0.0 . 49 . . Atlas-SNP MMP14 4323 hgsc.bcm.edu hg19 14 23314461 23314461 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MMP14 NM_004995 exon9 c.T1303C p.Y435H CCCAGGTACTACC . 49.0 4.0 40.0 0.0 . 40 . . Atlas-SNP SLC7A8 23428 hgsc.bcm.edu hg19 14 23598939 23598939 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC7A8 NM_012244 exon9 c.A1183G p.N395D GGTAGTTGATGAA . 80.0 4.0 165.0 0.0 . 54 . . Atlas-SNP PABPN1 8106 hgsc.bcm.edu hg19 14 23790983 23790983 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PABPN1 NM_004643 exon1 c.C305T p.P102L AGGAGCCGGGACT . 102.0 5.0 176.0 0.0 . 18 . . Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23866382 23866382 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYH6 NM_002471 exon17 c.C2047A p.P683T CACCTGGAGCCTT . 93.0 4.0 110.0 0.0 . 274 . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23890225 23890225 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYH7 NM_000257 exon26 c.G3278T p.R1093M TCAATCCTTGCGT . 100.0 5.0 160.0 0.0 . 349 . . Atlas-SNP TM9SF1 10548 hgsc.bcm.edu hg19 14 24662037 24662037 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TM9SF1 NM_001014842 exon3 c.C784A p.R262R CATTCCGAAGCAC . 100.0 4.0 144.0 0.0 . 58 . . Atlas-SNP RIPK3 11035 hgsc.bcm.edu hg19 14 24808320 24808320 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RIPK3 NM_006871 exon3 c.G372T p.V124V AAGCACCACTTCT . 67.0 4.0 103.0 0.0 . 43 . . Atlas-SNP PRKD1 5587 hgsc.bcm.edu hg19 14 30066937 30066937 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d PRKD1_ENST00000331968,right_upper_lobe,carcinoma,0,4 PRKD1 NM_002742 exon16 c.C2194T p.R732W TGATCCGGGCAAA . 24.0 2.0 34.0 0.0 . 316 . . Atlas-SNP PRKD1 5587 hgsc.bcm.edu hg19 14 30068321 30068321 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRKD1 NM_002742 exon15 c.C2078T p.A693V CGCAAAGCCACGA . 70.0 4.0 101.0 0.0 . 316 . . Atlas-SNP FBXO33 254170 hgsc.bcm.edu hg19 14 39900875 39900875 + Silent SNP A A G rs377484603 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FBXO33 NM_203301 exon1 c.T492C p.T164T CCCTCCAGTCCCG . 70.0 4.0 94.0 0.0 . 21 . . Atlas-SNP FBXO33 254170 hgsc.bcm.edu hg19 14 39900902 39900902 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FBXO33 NM_203301 exon1 c.G465A p.G155G TCCGTCCCCTGGG . 83.0 4.0 110.0 0.0 . 21 . . Atlas-SNP FAM179B 23116 hgsc.bcm.edu hg19 14 45465036 45465036 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAM179B NM_015091 exon2 c.A2134G p.R712G AGAAAAAGAGTAT . 110.0 5.0 148.0 0.0 . 115 . . Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45633698 45633698 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FANCM NM_020937 exon10 c.G1718T p.R573L TACAACGAATGGG . 80.0 4.0 128.0 0.0 . 225 . . Atlas-SNP MDGA2 161357 hgsc.bcm.edu hg19 14 47613426 47613426 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MDGA2 NM_001113498 exon4 c.A647G p.E216G AATTGTTCTTTAG . 112.0 5.0 146.0 0.0 . 470 . . Atlas-SNP NID2 22795 hgsc.bcm.edu hg19 14 52509008 52509008 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NID2 NM_007361 exon7 c.T1640C p.V547A AAGTGCACGGGTG . 82.0 5.0 137.0 0.0 . 201 . . Atlas-SNP WDHD1 11169 hgsc.bcm.edu hg19 14 55434060 55434060 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDHD1 NM_007086 exon17 c.G2116A p.V706I TAGCAACAGCAGG . 82.0 4.0 101.0 0.0 . 82 . . Atlas-SNP SLC38A6 145389 hgsc.bcm.edu hg19 14 61550393 61550393 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC38A6 NM_001172702 exon17 c.T1529C p.I510T CCTTGATCTTGCA . 92.0 4.0 99.0 0.0 . 87 . . Atlas-SNP SLC38A6 145389 hgsc.bcm.edu hg19 14 61550399 61550399 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC38A6 NM_001172702 exon17 c.A1535G p.H512R TCTTGCACTTCCC . 84.0 5.0 96.0 0.0 . 87 . . Atlas-SNP SLC38A6 145389 hgsc.bcm.edu hg19 14 61550409 61550409 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC38A6 NM_001172702 exon17 c.C1545A p.T515T CCCAACCTCCAGA . 79.0 4.0 87.0 0.0 . 87 . . Atlas-SNP PRKCH 5583 hgsc.bcm.edu hg19 14 61920071 61920071 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRKCH NM_006255 exon7 c.G960T p.S320S AACCTCGGTGAGA . 112.0 5.0 114.0 0.0 . 89 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64641845 64641845 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SYNE2 NM_182914 exon95 c.A17419G p.S5807G TTCCAGAGCACTG . 113.0 5.0 88.0 0.0 . 577 . . Atlas-SNP RAB15 376267 hgsc.bcm.edu hg19 14 65417736 65417736 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RAB15 NM_198686 exon4 c.C380A p.A127E CGCCTTGCCTTCC . 35.0 5.0 31.0 0.0 . 23 . . Atlas-SNP FUT8 2530 hgsc.bcm.edu hg19 14 66083023 66083023 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d FUT8_ENST00000360689,NS,carcinoma,0,4 FUT8 NM_178155 exon5 c.G414T p.K138N ATTAAAGAACTTA . 86.0 4.0 115.0 0.0 . 101 . . Atlas-SNP RDH11 51109 hgsc.bcm.edu hg19 14 68157901 68157901 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RDH11 NM_001252650 exon4 c.A410G p.K137R GCTGTCTTCGAGT . 89.0 4.0 129.0 0.0 . 21 . . Atlas-SNP PLEKHD1 400224 hgsc.bcm.edu hg19 14 69967627 69967627 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLEKHD1 NM_001161498 exon4 c.A373G p.T125A GAGCAGACCCAGT . 60.0 4.0 64.0 0.0 . 24 . . Atlas-SNP PAPLN 89932 hgsc.bcm.edu hg19 14 73720573 73720573 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PAPLN NM_173462 exon11 c.G1125T p.E375D CGTGGAGGAGGCT . 94.0 4.0 145.0 0.0 . 180 . . Atlas-SNP HEATR4 399671 hgsc.bcm.edu hg19 14 73969702 73969702 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HEATR4 NM_203309 exon10 c.T2002C p.L668L GGATCAACTTATG . 88.0 4.0 84.0 0.0 . 126 . . Atlas-SNP ALDH6A1 4329 hgsc.bcm.edu hg19 14 74534081 74534081 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ALDH6A1 NM_005589 exon9 c.1042+2T>C . TTGATTACCTGCA . 73.0 4.0 63.0 0.0 . 42 . . Atlas-SNP ADCK1 57143 hgsc.bcm.edu hg19 14 78374194 78374194 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADCK1 NM_020421 exon7 c.G790T p.E264X CTGATGGAGTTTG . 71.0 5.0 147.0 0.0 . 81 . . Atlas-SNP NRXN3 9369 hgsc.bcm.edu hg19 14 80130289 80130289 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NRXN3 NM_004796 exon14 c.A2494G p.T832A TATCCTACAGGTA . 93.0 4.0 115.0 0.0 . 342 . . Atlas-SNP CEP128 145508 hgsc.bcm.edu hg19 14 80971326 80971326 + Missense_Mutation SNP C C A rs377362585 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CEP128 NM_152446 exon23 c.G3110T p.G1037V TCTAACCCACGAG . 60.0 4.0 78.0 0.0 . 146 . . Atlas-SNP PTPN21 11099 hgsc.bcm.edu hg19 14 88974267 88974267 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPN21 NM_007039 exon4 c.G448A p.A150T ATTTACCTTGAAC . 79.0 4.0 95.0 0.0 . 113 . . Atlas-SNP GPR68 8111 hgsc.bcm.edu hg19 14 91700499 91700499 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d GPR68,colon,carcinoma,0,1 GPR68 NM_001177676 exon2 c.G896A p.R299H CGGAGGCGGGCCA . 32.0 11.0 40.0 0.0 . 32 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94158258 94158258 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UNC79 NM_020818 exon47 c.C7022A p.P2341H TGACACCCAGCAT . 138.0 8.0 173.0 0.0 . 366 . . Atlas-SNP DEGS2 123099 hgsc.bcm.edu hg19 14 100613207 100613207 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DEGS2 NM_206918 exon3 c.C863A p.P288Q TGCTGCGGCAGGT . 75.0 4.0 114.0 0.0 . 25 . . Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102446804 102446804 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DYNC1H1 NM_001376 exon5 c.A878G p.E293G AACGGGAGAGCCC . 102.0 6.0 113.0 0.0 . 395 . . Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102494143 102494143 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DYNC1H1 NM_001376 exon47 c.C9236A p.A3079E ACCGGGCAGCTAC . 59.0 14.0 88.0 0.0 . 395 . . Atlas-SNP ZNF839 55778 hgsc.bcm.edu hg19 14 102805186 102805186 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF839 NM_018335 exon6 c.C1693A p.R565R TTCCTACGGAAGA . 149.0 35.0 217.0 0.0 . 41 . . Atlas-SNP AMN 81693 hgsc.bcm.edu hg19 14 103396365 103396365 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AMN NM_030943 exon9 c.C948A p.P316P TGGGCCCGAGACA . 76.0 4.0 114.0 0.0 . 13 . . Atlas-SNP C14orf2 9556 hgsc.bcm.edu hg19 14 104379023 104379023 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C14orf2 NM_001127393 exon5 c.C208T p.P70S GAGCAGGCGCTGA . 66.0 4.0 72.0 0.0 . 7 . . Atlas-SNP TDRD9 122402 hgsc.bcm.edu hg19 14 104470585 104470585 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TDRD9 NM_153046 exon14 c.A1494G p.G498G TGCTGGACGAGTG . 91.0 4.0 137.0 0.0 . 175 . . Atlas-SNP GPR132 29933 hgsc.bcm.edu hg19 14 105517772 105517772 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GPR132 NM_013345 exon4 c.T702C p.A234A CTGGGCAGCGCTT . 99.0 4.0 152.0 0.0 . 40 . . Atlas-SNP TUBGCP5 114791 hgsc.bcm.edu hg19 15 22873209 22873209 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TUBGCP5 NM_052903 exon23 c.T3036C p.S1012S GGAATCTCTAGCG . 100.0 4.0 100.0 0.0 . 82 . . Atlas-SNP GABRB3 2562 hgsc.bcm.edu hg19 15 26812847 26812847 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GABRB3 NM_021912 exon7 c.T716C p.L239S CTCTTCAACCGAA . 80.0 4.0 103.0 0.0 . 338 . . Atlas-SNP TRPM1 4308 hgsc.bcm.edu hg19 15 31360167 31360167 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRPM1 NM_001252020 exon4 c.C459T p.P153P CAGCTTGGGCTGC . 99.0 4.0 101.0 0.0 . 183 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 33855056 33855056 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RYR3 NM_001243996 exon11 c.G991T p.D331Y AAATTAGACTCCA . 86.0 30.0 120.0 0.0 . 760 . . Atlas-SNP AQR 9716 hgsc.bcm.edu hg19 15 35182513 35182513 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AQR NM_014691 exon24 c.T2584C p.L862L CAAACAACTGGTT . 97.0 4.0 147.0 0.0 . 139 . . Atlas-SNP AQR 9716 hgsc.bcm.edu hg19 15 35212582 35212582 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AQR NM_014691 exon14 c.C1172A p.P391H TTTTTAGGAAGAG . 88.0 4.0 92.0 0.0 . 139 . . Atlas-SNP EIF2AK4 440275 hgsc.bcm.edu hg19 15 40301931 40301931 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EIF2AK4 NM_001013703 exon26 c.G3693A p.V1231V TGCTGTGGTAAGC . 96.0 4.0 138.0 0.0 . 107 . . Atlas-SNP PAK6 56924 hgsc.bcm.edu hg19 15 40565184 40565184 + Missense_Mutation SNP A A G rs140245743 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PAK6 NM_001128629 exon6 c.A1474G p.I492V ACAGACATCGTCT . 70.0 4.0 66.0 0.0 . 49 . A|1.000;G|0.000 Atlas-SNP VPS18 57617 hgsc.bcm.edu hg19 15 41187016 41187016 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS18 NM_020857 exon1 c.T50C p.V17A CGGCCGTCTTGCA . 48.0 4.0 127.0 0.0 . 67 . . Atlas-SNP NDUFAF1 51103 hgsc.bcm.edu hg19 15 41687071 41687071 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NDUFAF1 NM_016013 exon3 c.T745C p.W249R CCTGCCAGTAGGG . 71.0 4.0 95.0 0.0 . 39 . . Atlas-SNP LTK 4058 hgsc.bcm.edu hg19 15 41801262 41801262 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LTK NM_002344 exon8 c.C1063A p.P355T TGCTGGGGTGTAT . 163.0 7.0 238.0 0.0 . 117 . . Atlas-SNP MGA 23269 hgsc.bcm.edu hg19 15 41989188 41989188 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MGA NM_001080541 exon3 c.G1980T p.V660V AGATGTGGATGGT . 86.0 4.0 88.0 0.0 . 264 . . Atlas-SNP SPTBN5 51332 hgsc.bcm.edu hg19 15 42182404 42182404 + Splice_Site SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPTBN5 NM_016642 exon5 c.280-1G>T . TGGCACCTGTGGG . 90.0 4.0 147.0 0.0 . 171 . . Atlas-SNP TMEM87A 25963 hgsc.bcm.edu hg19 15 42529654 42529654 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMEM87A NM_015497 exon9 c.A844G p.N282D GGATATTCTGAAA . 89.0 4.0 101.0 0.0 . 56 . . Atlas-SNP SERINC4 619189 hgsc.bcm.edu hg19 15 44089116 44089116 + Silent SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SERINC4 NM_001258031 exon7 c.A867T p.L289L AGCTTGTAGGAGG . 121.0 5.0 175.0 0.0 . 18 . . Atlas-SNP SPG11 80208 hgsc.bcm.edu hg19 15 44876208 44876208 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPG11 NM_025137 exon30 c.T5670C p.C1890C ATGCACACAGCCA . 98.0 5.0 102.0 0.0 . 207 . . Atlas-SNP SPATA5L1 79029 hgsc.bcm.edu hg19 15 45713246 45713246 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPATA5L1 NM_024063 exon8 c.T2100C p.A700A GGCTGCTTTGCTG . 60.0 4.0 43.0 0.0 . 40 . . Atlas-SNP SLC12A1 6557 hgsc.bcm.edu hg19 15 48519318 48519318 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC12A1 NM_001184832 exon5 c.C671T p.T224I TAACGACACTCAC . 99.0 4.0 155.0 0.0 . 243 . . Atlas-SNP SLC12A1 6557 hgsc.bcm.edu hg19 15 48539187 48539187 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC12A1 NM_001184832 exon12 c.C1534T p.L512F GCCTCCCTTGTCA . 98.0 4.0 138.0 0.0 . 243 . . Atlas-SNP SECISBP2L 9728 hgsc.bcm.edu hg19 15 49320786 49320786 + Missense_Mutation SNP G G C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SECISBP2L NM_001193489 exon5 c.C758G p.P253R GCAGTAGGGTGGG . 140.0 51.0 218.0 0.0 . 118 . . Atlas-SNP GALK2 2585 hgsc.bcm.edu hg19 15 49611880 49611880 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GALK2 NM_002044 exon9 c.T1047C p.C349C GATATGTGAAGAA . 100.0 4.0 135.0 0.0 . 78 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54307628 54307628 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d UNC13C_ENST00000260323,colon,carcinoma,0,2 UNC13C NM_001080534 exon1 c.A2528G p.E843G CAAATGAGTCAAG . 69.0 3.0 76.0 1.0 . 674 . . Atlas-SNP CCPG1 9236 hgsc.bcm.edu hg19 15 55664085 55664085 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCPG1 NM_020739 exon6 c.G612A p.K204K CAACTCCTTAGAA . 204.0 34.0 271.0 0.0 . 74 . . Atlas-SNP VPS13C 54832 hgsc.bcm.edu hg19 15 62202491 62202491 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS13C NM_020821 exon64 c.G8729T p.W2910L TCTGGCCAAAATG . 78.0 4.0 100.0 0.0 . 506 . . Atlas-SNP FBXL22 283807 hgsc.bcm.edu hg19 15 63889776 63889776 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FBXL22 NM_203373 exon1 c.A185G p.K62R TCCAGAAGGACAA . 83.0 4.0 80.0 0.0 . 4 . . Atlas-SNP PARP16 54956 hgsc.bcm.edu hg19 15 65578651 65578651 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PARP16 NM_017851 exon1 c.G114T p.S38S CAGCACCGAGTCG . 78.0 4.0 68.0 0.0 . 23 . . Atlas-SNP IGDCC3 9543 hgsc.bcm.edu hg19 15 65621487 65621487 + Splice_Site SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IGDCC3 NM_004884 exon15 c.2206-1G>T . ATCCTGCTGGGGA . 46.0 16.0 51.0 0.0 . 82 . . Atlas-SNP ARIH1 25820 hgsc.bcm.edu hg19 15 72767267 72767267 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARIH1 NM_005744 exon1 c.A287G p.E96G AGCAGGAGGAGGA . 79.0 4.0 86.0 0.0 . 42 . . Atlas-SNP PML 5371 hgsc.bcm.edu hg19 15 74327563 74327563 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PML NM_033239 exon8 c.C1761A p.S587S CCACTCCTCGCCA . 94.0 4.0 159.0 0.0 . 169 . . Atlas-SNP CYP1A1 1543 hgsc.bcm.edu hg19 15 75015213 75015213 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CYP1A1 NM_000499 exon2 c.A226G p.I76V TTCGGATCTGCAG . 99.0 5.0 142.0 0.0 . 60 . . Atlas-SNP NEIL1 79661 hgsc.bcm.edu hg19 15 75647049 75647049 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NEIL1 NM_001256552 exon9 c.T1250C p.L417P GAGACCTTCCTAA . 66.0 4.0 82.0 0.0 . 36 . . Atlas-SNP ACSBG1 23205 hgsc.bcm.edu hg19 15 78474373 78474373 + Missense_Mutation SNP C C A rs372447099 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ACSBG1 NM_015162 exon8 c.G1009T p.D337Y ACAGGTCGTAGAT . 48.0 4.0 70.0 0.0 . 79 . . Atlas-SNP ADAMTSL3 57188 hgsc.bcm.edu hg19 15 84561455 84561455 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADAMTSL3 NM_207517 exon13 c.A1282G p.T428A CCTTGGACTGCAT . 91.0 4.0 120.0 0.0 . 290 . . Atlas-SNP NTRK3 4916 hgsc.bcm.edu hg19 15 88679734 88679734 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d NTRK3_ENST00000360948,NS,carcinoma,0,3 NTRK3 NM_001243101 exon8 c.G729C p.W243C GACTATCCAGTCC . 75.0 4.0 134.0 0.0 . 587 . . Atlas-SNP MFGE8 4240 hgsc.bcm.edu hg19 15 89442944 89442944 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MFGE8 NM_005928 exon7 c.C969A p.Y323X ATTACTGTAGGCA . 97.0 4.0 125.0 0.0 . 60 . . Atlas-SNP RLBP1 6017 hgsc.bcm.edu hg19 15 89760380 89760380 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d RLBP1,face,carcinoma,0,1 RLBP1 NM_000326 exon5 c.A317G p.N106S CCCACGTTGAACT . 74.0 3.0 108.0 0.0 . 34 . . Atlas-SNP TICRR 90381 hgsc.bcm.edu hg19 15 90142664 90142664 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_152259 exon8 c.C2010A p.T670T CTCAACCGTTAAA . 92.0 4.0 144.0 0.0 . . . . Atlas-SNP VPS33B 26276 hgsc.bcm.edu hg19 15 91549273 91549273 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS33B NM_018668 exon12 c.G869A p.R290Q TCGTTCCGAATCT . 110.0 5.0 113.0 0.0 . 42 . . Atlas-SNP NR2F2 7026 hgsc.bcm.edu hg19 15 96877485 96877485 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NR2F2 NM_021005 exon2 c.G623T p.G208V TCATGGGTATCGA . 112.0 5.0 135.0 0.0 . 35 . . Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1261545 1261545 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CACNA1H NM_021098 exon23 c.A4415G p.Q1472R AGGCACAGTGCCG . 89.0 4.0 137.0 0.0 . 317 . . Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1270004 1270004 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CACNA1H NM_021098 exon35 c.G6072A p.L2024L TTCCTTGGAAGGG . 99.0 4.0 118.0 0.0 . 317 . . Atlas-SNP TBL3 10607 hgsc.bcm.edu hg19 16 2024958 2024958 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d TBL3,NS,carcinoma,0,1 TBL3 NM_006453 exon7 c.G494T p.R165L CTACACGCCTGCT . 56.0 3.0 109.0 1.0 . 54 . . Atlas-SNP TBL3 10607 hgsc.bcm.edu hg19 16 2027159 2027159 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TBL3 NM_006453 exon15 c.T1545C p.G515G GCTGGGTGTCTTC . 40.0 4.0 57.0 0.0 . 54 . . Atlas-SNP ABCA3 21 hgsc.bcm.edu hg19 16 2339468 2339468 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCA3 NM_001089 exon20 c.G2667A p.E889E CTCCTCCTCGATG . 67.0 16.0 110.0 0.0 . 176 . . Atlas-SNP SRRM2 23524 hgsc.bcm.edu hg19 16 2812361 2812361 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SRRM2 NM_016333 exon11 c.G1832T p.R611L CAGCCCGGAGGGG . 54.0 5.0 89.0 0.0 . 263 . . Atlas-SNP CCDC64B 146439 hgsc.bcm.edu hg19 16 3078749 3078749 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC64B NM_001103175 exon7 c.G1190T p.G397V GCCTCCCCAGGGT . 118.0 6.0 143.0 0.0 . 19 . . Atlas-SNP ZNF75A 7627 hgsc.bcm.edu hg19 16 3367499 3367499 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF75A NM_153028 exon6 c.C521G p.S174C TTAGCTCTGACCT . 199.0 62.0 220.0 0.0 . 34 . . Atlas-SNP CREBBP 1387 hgsc.bcm.edu hg19 16 3778391 3778391 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CREBBP NM_004380 exon31 c.C6657A p.A2219A CATGCCGGCACTC . 76.0 5.0 82.0 0.0 . 546 . . Atlas-SNP DNAJA3 9093 hgsc.bcm.edu hg19 16 4500484 4500484 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DNAJA3 NM_001135110 exon10 c.C1325T p.T442I GCGTCACCCTCAC . 66.0 4.0 72.0 0.0 . 52 . . Atlas-SNP ABAT 18 hgsc.bcm.edu hg19 16 8866644 8866644 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABAT NM_001127448 exon12 c.A824G p.D275G TGGAGGATCTGAT . 100.0 4.0 103.0 0.0 . 46 . . Atlas-SNP USP7 7874 hgsc.bcm.edu hg19 16 9015082 9015082 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP7 NM_003470 exon4 c.C454A p.R152S TACGACGACTGAA . 135.0 8.0 148.0 0.0 . 116 . . Atlas-SNP GRIN2A 2903 hgsc.bcm.edu hg19 16 9934644 9934644 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GRIN2A NM_000833 exon8 c.G1511T p.R504L ACTGCCCGTTGAT . 72.0 4.0 109.0 0.0 . 366 . . Atlas-SNP PDXDC1 23042 hgsc.bcm.edu hg19 16 15127208 15127208 + Silent SNP C C A rs151129728 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PDXDC1 NM_015027 exon19 c.C1764A p.L588L TGAGCTCGTGGAG . 72.0 4.0 86.0 0.0 . 59 . C|1.000;T|0.000 Atlas-SNP USP31 57478 hgsc.bcm.edu hg19 16 23080459 23080459 + Silent SNP G G T rs201814190 by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d USP31,leg,malignant_melanoma,0,1 USP31 NM_020718 exon16 c.C2967A p.I989I ATAAGCGATCTGA . 27.0 4.0 50.0 0.0 . 122 . G|1.000;A|0.000 Atlas-SNP USP31 57478 hgsc.bcm.edu hg19 16 23080589 23080589 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP31 NM_020718 exon16 c.A2837G p.E946G ACGCCTTCCATGA . 96.0 5.0 103.0 0.0 . 122 . . Atlas-SNP USP31 57478 hgsc.bcm.edu hg19 16 23091273 23091273 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . USP31 NM_020718 exon13 c.T2170C p.Y724H CTGTGTAGTGCCC . 75.0 4.0 116.0 0.0 . 122 . . Atlas-SNP XPO6 23214 hgsc.bcm.edu hg19 16 28167437 28167437 + Missense_Mutation SNP T T A rs369899782 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . XPO6 NM_015171 exon7 c.A1055T p.N352I TGGGCATTGTTAT . 544.0 173.0 773.0 0.0 . 177 . . Atlas-SNP TUFM 7284 hgsc.bcm.edu hg19 16 28856082 28856082 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d TUFM,rectum,carcinoma,0,1 TUFM NM_003321 exon5 c.C621A p.T207T AAACTCGGTGAGC . 100.0 4.0 126.0 0.0 . 33 . . Atlas-SNP SPN 6693 hgsc.bcm.edu hg19 16 29675060 29675060 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPN NM_001030288 exon2 c.T11C p.L4P CCACGCTTCTCCT . 104.0 5.0 122.0 0.0 . 44 . . Atlas-SNP MAZ 4150 hgsc.bcm.edu hg19 16 29820871 29820871 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MAZ NM_001042539 exon5 c.G1290T p.T430T CACCACGGCAGCA . 125.0 5.0 141.0 0.0 . 48 . . Atlas-SNP TAOK2 9344 hgsc.bcm.edu hg19 16 30002499 30002499 + Silent SNP G G T rs138517482 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TAOK2 NM_004783 exon19 c.G2760T p.L920L GGCTCTGGGGGGC . 79.0 4.0 97.0 0.0 . 142 . G|1.000;C|0.000 Atlas-SNP DOC2A 8448 hgsc.bcm.edu hg19 16 30020840 30020840 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DOC2A NM_003586 exon3 c.C301A p.R101R AGGCCCGGTCGTA . 57.0 4.0 58.0 0.0 . 40 . . Atlas-SNP GDPD3 79153 hgsc.bcm.edu hg19 16 30124047 30124047 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GDPD3 NM_024307 exon3 c.G250A p.V84M GTGACACCACCAC . 40.0 13.0 52.0 0.0 . 23 . . Atlas-SNP ZNF629 23361 hgsc.bcm.edu hg19 16 30793344 30793344 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF629 NM_001080417 exon3 c.C2305A p.R769S AGCAGCGGTAGGG . 89.0 4.0 89.0 0.0 . 44 . . Atlas-SNP SETD1A 9739 hgsc.bcm.edu hg19 16 30976649 30976649 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SETD1A NM_014712 exon7 c.A1586G p.E529G GGAGTGAGGTGCC . 101.0 5.0 133.0 0.0 . 143 . . Atlas-SNP HSD3B7 80270 hgsc.bcm.edu hg19 16 30997766 30997766 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HSD3B7 NM_025193 exon4 c.T345C p.A115A CGAGGCTTGTGTG . 123.0 6.0 96.0 0.0 . 33 . . Atlas-SNP BCKDK 10295 hgsc.bcm.edu hg19 16 31123498 31123498 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BCKDK NM_005881 exon12 c.T1151C p.L384P GGTCTCTGCAGCT . 90.0 4.0 90.0 0.0 . 52 . . Atlas-SNP ZNF267 10308 hgsc.bcm.edu hg19 16 31926476 31926476 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZNF267,right_upper_lobe,carcinoma,0,1 ZNF267 NM_003414 exon4 c.A906G p.K302K TGATAAAGATCTT . 72.0 3.0 99.0 0.0 . 94 . . Atlas-SNP SHCBP1 79801 hgsc.bcm.edu hg19 16 46633834 46633834 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SHCBP1 NM_024745 exon9 c.C1254A p.G418G GCCTTTGCCCCTC . 70.0 4.0 110.0 0.0 . 54 . . Atlas-SNP NLRC5 84166 hgsc.bcm.edu hg19 16 57113154 57113154 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NLRC5 NM_032206 exon44 c.T5187C p.A1729A CCTGGCTGGAGGG . 100.0 4.0 142.0 0.0 . 186 . . Atlas-SNP C16orf80 29105 hgsc.bcm.edu hg19 16 58150036 58150036 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C16orf80 NM_013242 exon3 c.C185A p.P62H TCTGCAGGGCATG . 96.0 4.0 170.0 0.0 . 17 . . Atlas-SNP DYNC1LI2 1783 hgsc.bcm.edu hg19 16 66764024 66764024 + Silent SNP G G T rs145562779 bycluster;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DYNC1LI2 NM_006141 exon8 c.C1032A p.P344P TCTCACGGGAGGT . 79.0 4.0 105.0 0.0 . 37 . G|1.000;A|0.000 Atlas-SNP ZDHHC1 29800 hgsc.bcm.edu hg19 16 67432186 67432186 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZDHHC1 NM_013304 exon8 c.C856A p.R286S GTGGGCGGTGCTG . 61.0 4.0 78.0 0.0 . 28 . . Atlas-SNP RLTPR 146206 hgsc.bcm.edu hg19 16 67679452 67679452 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RLTPR NM_001013838 exon2 c.C50T p.T17I AGATCACCAGGTT . 75.0 4.0 109.0 0.0 . 124 . . Atlas-SNP TSNAXIP1 55815 hgsc.bcm.edu hg19 16 67859899 67859899 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TSNAXIP1 NM_018430 exon9 c.A902G p.K301R CGCTGAAGGAACG . 64.0 4.0 94.0 0.0 . 66 . . Atlas-SNP ESRP2 80004 hgsc.bcm.edu hg19 16 68269764 68269764 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ESRP2 NM_024939 exon1 c.C185A p.P62Q CTCCGCGGCTCAA . 85.0 4.0 138.0 0.0 . 118 . . Atlas-SNP MTSS1L 92154 hgsc.bcm.edu hg19 16 70698860 70698860 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d MTSS1L,NS,carcinoma,0,1 MTSS1L NM_138383 exon13 c.C1268A p.P423Q GGTCGCGGTGCCT . 62.0 3.0 93.0 0.0 . 22 . . Atlas-SNP PMFBP1 83449 hgsc.bcm.edu hg19 16 72163129 72163129 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PMFBP1 NM_031293 exon13 c.A1786G p.R596G GCTCCCTGTGCTG . 84.0 4.0 103.0 0.0 . 101 . . Atlas-SNP PMFBP1 83449 hgsc.bcm.edu hg19 16 72184647 72184647 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PMFBP1 NM_031293 exon5 c.T496C p.L166L CGGCCAAGGCGAG . 94.0 4.0 111.0 0.0 . 101 . . Atlas-SNP CMIP 80790 hgsc.bcm.edu hg19 16 81654516 81654516 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CMIP NM_198390 exon3 c.T462C p.H154H GTTCCATTCTCTG . 98.0 4.0 125.0 0.0 . 37 . . Atlas-SNP MBTPS1 8720 hgsc.bcm.edu hg19 16 84097002 84097002 + Missense_Mutation SNP A A G rs138967616 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MBTPS1 NM_003791 exon19 c.T2480C p.I827T CCCAAAATGGGGA . 121.0 5.0 143.0 0.0 . 85 . A|1.000;G|0.000 Atlas-SNP TAF1C 9013 hgsc.bcm.edu hg19 16 84212983 84212983 + Nonsense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TAF1C NM_005679 exon14 c.G2174A p.W725X CCTGCCCAGGCTT . 84.0 4.0 122.0 0.0 . 60 . . Atlas-SNP GALNS 2588 hgsc.bcm.edu hg19 16 88909227 88909227 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GALNS NM_000512 exon2 c.G131A p.G44D AGGTCACCCCATC . 84.0 4.0 92.0 0.0 . 37 . . Atlas-SNP METTL16 79066 hgsc.bcm.edu hg19 17 2323799 2323799 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . METTL16 NM_024086 exon10 c.A1154G p.K385R TCTCTTTTCTTTC . 74.0 4.0 50.0 0.0 . 75 . . Atlas-SNP CLUH 23277 hgsc.bcm.edu hg19 17 2599486 2599486 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_015229 exon13 c.T2241C p.A747A GAAGGCAGCCGCG . 99.0 6.0 158.0 0.0 . . . . Atlas-SNP RAP1GAP2 23108 hgsc.bcm.edu hg19 17 2921396 2921396 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RAP1GAP2 NM_015085 exon18 c.G1536A p.V512V CATGGTGGGCGGC . 54.0 4.0 77.0 0.0 . 90 . . Atlas-SNP GSG2 83903 hgsc.bcm.edu hg19 17 3628016 3628016 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GSG2 NM_031965 exon1 c.G787T p.G263W GCAGATGGGAAGA . 75.0 4.0 110.0 0.0 . 48 . . Atlas-SNP MYBBP1A 10514 hgsc.bcm.edu hg19 17 4458458 4458458 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYBBP1A NM_014520 exon1 c.G162A p.T54T CTTCTCCGTGGCC . 77.0 4.0 82.0 0.0 . 69 . . Atlas-SNP MINK1 50488 hgsc.bcm.edu hg19 17 4793904 4793904 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MINK1 NM_170663 exon14 c.G1440T p.Q480H CCTGCAGCAGCAG . 64.0 4.0 72.0 0.0 . 110 . . Atlas-SNP SLC52A1 55065 hgsc.bcm.edu hg19 17 4936582 4936582 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_017986 exon4 c.G1108T p.G370C TGGTGCCCACCAG . 88.0 4.0 105.0 0.0 . . . . Atlas-SNP RABEP1 9135 hgsc.bcm.edu hg19 17 5283729 5283729 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RABEP1 NM_004703 exon16 c.A2342G p.E781G TGGAAGAGCAGTT . 75.0 4.0 107.0 0.0 . 59 . . Atlas-SNP NUP88 4927 hgsc.bcm.edu hg19 17 5317451 5317451 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NUP88 NM_002532 exon3 c.C471A p.T157T TGGAGTGGTACTA . 66.0 4.0 62.0 0.0 . 47 . . Atlas-SNP TEKT1 83659 hgsc.bcm.edu hg19 17 6716342 6716342 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TEKT1 NM_053285 exon6 c.C660A p.F220L GCTGGAGAAGTCC . 65.0 4.0 95.0 0.0 . 49 . . Atlas-SNP DVL2 1856 hgsc.bcm.edu hg19 17 7132581 7132581 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DVL2 NM_004422 exon8 c.T830C p.F277S CCCAGGAAGTTGT . 79.0 4.0 115.0 0.0 . 49 . . Atlas-SNP DVL2 1856 hgsc.bcm.edu hg19 17 7133190 7133190 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DVL2 NM_004422 exon5 c.T593C p.L198P GTCATGAGGGTAG . 50.0 4.0 93.0 0.0 . 49 . . Atlas-SNP TNK1 8711 hgsc.bcm.edu hg19 17 7290400 7290400 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNK1 NM_001251902 exon9 c.G1339T p.G447C GCGGGGGGCTTGC . 67.0 4.0 97.0 0.0 . 31 . . Atlas-SNP ZBTB4 57659 hgsc.bcm.edu hg19 17 7370026 7370026 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZBTB4 NM_001128833 exon3 c.T95C p.V32A AGGGTGACGTCAC . 67.0 4.0 113.0 0.0 . 163 . . Atlas-SNP SENP3 26168 hgsc.bcm.edu hg19 17 7466514 7466514 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SENP3 NM_015670 exon2 c.C121A p.R41R AAACCCCGACTCA . 83.0 4.0 91.0 0.0 . 18 . . Atlas-SNP KDM6B 23135 hgsc.bcm.edu hg19 17 7749921 7749921 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KDM6B NM_001080424 exon8 c.C574T p.R192W GCCAAGCGGGGAG . 63.0 26.0 73.0 0.0 . 95 . . Atlas-SNP CTC1 80169 hgsc.bcm.edu hg19 17 8138160 8138160 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CTC1 NM_025099 exon9 c.T1524C p.A508A GGTAGGAGCCAGG . 130.0 6.0 208.0 0.0 . 75 . . Atlas-SNP ARHGEF15 22899 hgsc.bcm.edu hg19 17 8221748 8221748 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARHGEF15 NM_025014 exon10 c.A1748G p.N583S AGGAGAATGCCCA . 56.0 5.0 105.0 0.0 . 97 . . Atlas-SNP NDEL1 81565 hgsc.bcm.edu hg19 17 8347657 8347657 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NDEL1 NM_001025579 exon2 c.C68A p.S23Y AACTTTCCTTGAA . 88.0 4.0 120.0 0.0 . 47 . . Atlas-SNP ZNF18 7566 hgsc.bcm.edu hg19 17 11896054 11896054 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF18 NM_144680 exon4 c.A93G p.Q31Q TTCCTCTTGAAGG . 95.0 4.0 96.0 0.0 . 42 . . Atlas-SNP TOM1L2 146691 hgsc.bcm.edu hg19 17 17801962 17801962 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TOM1L2 NM_001033551 exon3 c.A164G p.K55R CGCTTCTTCAGGG . 295.0 119.0 314.0 1.0 . 54 . . Atlas-SNP ATPAF2 91647 hgsc.bcm.edu hg19 17 17921898 17921898 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATPAF2 NM_145691 exon8 c.A835G p.S279G TGGTGCTCTCGGA . 86.0 4.0 120.0 0.0 . 15 . . Atlas-SNP RNF112 7732 hgsc.bcm.edu hg19 17 19314770 19314770 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RNF112 NM_007148 exon1 c.A49G p.K17E CTTGGCAAACGGG . 28.0 4.0 35.0 0.0 . 37 . . Atlas-SNP SLC47A1 55244 hgsc.bcm.edu hg19 17 19476161 19476161 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC47A1 NM_018242 exon16 c.T1473C p.D491D TCAGGATCCGCTT . 100.0 4.0 110.0 0.0 . 55 . . Atlas-SNP SPECC1 92521 hgsc.bcm.edu hg19 17 20107661 20107661 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPECC1 NM_001033553 exon4 c.C299G p.T100S CAACAACTAAACG . 63.0 26.0 102.0 0.0 . 100 . . Atlas-SNP SPAG5 10615 hgsc.bcm.edu hg19 17 26907029 26907029 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPAG5 NM_006461 exon16 c.A2795G p.E932G TAACCTTCATCTG . 140.0 6.0 134.0 0.0 . 92 . . Atlas-SNP SUPT6H 6830 hgsc.bcm.edu hg19 17 27022398 27022398 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SUPT6H NM_003170 exon29 c.T3803C p.M1268T GCATCATGAAGAT . 158.0 7.0 113.0 0.0 . 165 . . Atlas-SNP SUPT6H 6830 hgsc.bcm.edu hg19 17 27027431 27027431 + Silent SNP G G T rs373264371 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SUPT6H NM_003170 exon35 c.G4707T p.A1569A TGCTGCGGTGACA . 94.0 4.0 86.0 0.0 . 165 . . Atlas-SNP MYO18A 399687 hgsc.bcm.edu hg19 17 27438814 27438814 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYO18A NM_078471 exon16 c.T2666C p.V889A CCTGGCACCAGAG . 68.0 4.0 81.0 0.0 . 217 . . Atlas-SNP CRYBA1 1411 hgsc.bcm.edu hg19 17 27580737 27580737 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CRYBA1 NM_005208 exon5 c.C437T p.P146L ACTACCCCTCCTT . 162.0 27.0 123.0 0.0 . 15 . . Atlas-SNP ANKRD13B 124930 hgsc.bcm.edu hg19 17 27920706 27920706 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ANKRD13B NM_152345 exon1 c.T67C p.W23R CTCGTGTGGCACA . 97.0 4.0 95.0 0.0 . 39 . . Atlas-SNP ATAD5 79915 hgsc.bcm.edu hg19 17 29192785 29192785 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATAD5 NM_024857 exon11 c.T3200C p.I1067T AACTTATAGGAAA . 229.0 68.0 279.0 0.0 . 150 . . Atlas-SNP SPACA3 124912 hgsc.bcm.edu hg19 17 31323887 31323887 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPACA3 NM_173847 exon3 c.G370T p.G124C ACAAGCGGTTTCA . 123.0 5.0 141.0 0.0 . 35 . . Atlas-SNP RAD51D 5892 hgsc.bcm.edu hg19 17 33445530 33445530 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RAD51D NM_002878 exon3 c.G253T p.G85C CAATGCCAGTGGA . 79.0 4.0 62.0 0.0 . 53 . . Atlas-SNP TAF15 8148 hgsc.bcm.edu hg19 17 34171487 34171487 + Missense_Mutation SNP G G T rs71381481 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TAF15 NM_139215 exon15 c.G1184T p.R395L ATTTCCGGGGGAG . 182.0 8.0 158.0 0.0 . 46 . G|0.999;A|0.001 Atlas-SNP ERBB2 2064 hgsc.bcm.edu hg19 17 37872839 37872839 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ERBB2,bladder,carcinoma,0,1 ERBB2 NM_004448 exon14 c.C1718A p.S573X ATGGCTCAGTGAC . 73.0 4.0 132.0 0.0 . 429 . . Atlas-SNP NR1D1 9572 hgsc.bcm.edu hg19 17 38252091 38252091 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NR1D1 NM_021724 exon5 c.T854C p.V285A TCCTCCACTGTGG . 97.0 4.0 115.0 0.0 . 45 . . Atlas-SNP KRT27 342574 hgsc.bcm.edu hg19 17 38936687 38936687 + Silent SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KRT27 NM_181537 exon3 c.T549A p.L183L CTGGTGAAGCGCT . 82.0 4.0 123.0 0.0 . 41 . . Atlas-SNP KRTAP9-9 81870 hgsc.bcm.edu hg19 17 39411917 39411917 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KRTAP9-9 NM_030975 exon1 c.A280G p.T94A GGCCAAACCAGCT . 100.0 5.0 148.0 0.0 . 24 . . Atlas-SNP KRT16 3868 hgsc.bcm.edu hg19 17 39766790 39766790 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KRT16 NM_005557 exon6 c.A1073G p.E358G CTGTTCTCCAGGG . 83.0 4.0 98.0 0.0 . 45 . . Atlas-SNP KLHL10 317719 hgsc.bcm.edu hg19 17 39998458 39998458 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLHL10 NM_152467 exon2 c.A578G p.D193G AGAAAGATGAGCT . 87.0 4.0 121.0 0.0 . 67 . . Atlas-SNP KCNH4 23415 hgsc.bcm.edu hg19 17 40321671 40321671 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KCNH4 NM_012285 exon9 c.G1414A p.G472R CGTTCCCGAACAC . 66.0 4.0 73.0 0.0 . 105 . . Atlas-SNP VPS25 84313 hgsc.bcm.edu hg19 17 40928289 40928289 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . VPS25 NM_032353 exon5 c.C369A p.S123S CAACTCCGTCTTT . 121.0 5.0 174.0 0.0 . 11 . . Atlas-SNP CNTD1 124817 hgsc.bcm.edu hg19 17 40959859 40959859 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CNTD1 NM_173478 exon6 c.C799A p.Q267K TTCATCCAAAACC . 86.0 5.0 110.0 0.0 . 22 . . Atlas-SNP PTGES3L-AARSD1 100885850 hgsc.bcm.edu hg19 17 41108253 41108253 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d AARSD1,NS,carcinoma,0,1 PTGES3L-AARSD1 NM_001136042 exon11 c.G1153A p.G385R GGGTCCCACAGCA . 47.0 2.0 86.0 0.0 . 15 . . Atlas-SNP MEOX1 4222 hgsc.bcm.edu hg19 17 41720883 41720883 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MEOX1 NM_004527 exon2 c.G615T p.A205A GTTTACCGCAATC . 87.0 4.0 114.0 0.0 . 29 . . Atlas-SNP CD300LG 146894 hgsc.bcm.edu hg19 17 41924620 41924620 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD300LG NM_001168323 exon1 c.G36A p.L12L CCTGCTGCTCCCA . 94.0 22.0 106.0 0.0 . 46 . . Atlas-SNP TMUB2 79089 hgsc.bcm.edu hg19 17 42266555 42266555 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMUB2 NM_001076674 exon3 c.G201A p.L67L GCTCCTGGGCGCT . 94.0 4.0 114.0 0.0 . 29 . . Atlas-SNP EFTUD2 9343 hgsc.bcm.edu hg19 17 42937415 42937415 + Splice_Site SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EFTUD2 NM_004247 exon19 c.1720-2A>G . TGAGCCTGAGATC . 116.0 5.0 145.0 0.0 . 85 . . Atlas-SNP KIF18B 146909 hgsc.bcm.edu hg19 17 43005599 43005599 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIF18B NM_001264573 exon13 c.C2107A p.P703T TGGCTGGGCAAAC . 79.0 4.0 127.0 0.0 . 63 . . Atlas-SNP KIF18B 146909 hgsc.bcm.edu hg19 17 43012257 43012257 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIF18B NM_001264573 exon4 c.T518C p.L173P ATGGCAAGGGGCC . 56.0 5.0 57.0 0.0 . 63 . . Atlas-SNP FMNL1 752 hgsc.bcm.edu hg19 17 43314685 43314685 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d FMNL1,caecum,carcinoma,0,1 FMNL1 NM_005892 exon8 c.T761C p.V254A CCTGTGTCAATGA . 97.0 4.0 120.0 0.0 . 78 . . Atlas-SNP CDC27 996 hgsc.bcm.edu hg19 17 45249328 45249328 + Missense_Mutation SNP G G A rs142853734 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CDC27_ENST00000531206,NS,haematopoietic_neoplasm,0,2 CDC27 NM_001114091 exon3 c.C206T p.P69L CATTGCGGTGTAG . 55.0 3.0 76.0 0.0 . 337 . . Atlas-SNP SPATA20 64847 hgsc.bcm.edu hg19 17 48628203 48628203 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SPATA20 NM_022827 exon11 c.C1308A p.T436T TGCCACCGAGCCG . 125.0 5.0 169.0 0.0 . 59 . . Atlas-SNP ABCC3 8714 hgsc.bcm.edu hg19 17 48750986 48750986 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCC3 NM_003786 exon19 c.G2566T p.E856X CCCGATGAGGACC . 87.0 4.0 138.0 0.0 . 138 . . Atlas-SNP WFIKKN2 124857 hgsc.bcm.edu hg19 17 48913333 48913333 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WFIKKN2 NM_175575 exon1 c.G35A p.R12H GGTCTCGCTGGGA . 110.0 41.0 127.0 0.0 . 69 . . Atlas-SNP STXBP4 252983 hgsc.bcm.edu hg19 17 53150293 53150293 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . STXBP4 NM_178509 exon13 c.C1044A p.A348A AAGAGCCCTGCGT . 74.0 5.0 102.0 0.0 . 41 . . Atlas-SNP LPO 4025 hgsc.bcm.edu hg19 17 56344752 56344752 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LPO NM_006151 exon12 c.A1736G p.Q579R AGCCGCAGACACT . 62.0 4.0 88.0 0.0 . 73 . . Atlas-SNP TEX14 56155 hgsc.bcm.edu hg19 17 56690838 56690838 + Missense_Mutation SNP G G T rs150820263 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d TEX14_ENST00000240361,colon,carcinoma,0,2 TEX14 NM_001201457 exon9 c.C967A p.R323S CAAGGCGGGTTTT . 144.0 7.0 198.0 1.0 . 343 . G|1.000;A|0.000 Atlas-SNP DDX42 11325 hgsc.bcm.edu hg19 17 61889542 61889542 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DDX42 NM_203499 exon14 c.C1649A p.P550Q ACATCCCAGTCCT . 100.0 4.0 170.0 0.0 . 86 . . Atlas-SNP SCN4A 6329 hgsc.bcm.edu hg19 17 62022891 62022891 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SCN4A NM_000334 exon19 c.C3549A p.A1183A CTTGCCGGCAAAC . 136.0 6.0 204.0 0.0 . 205 . . Atlas-SNP ABCA9 10350 hgsc.bcm.edu hg19 17 67017907 67017907 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ABCA9 NM_080283 exon18 c.G2377A p.G793R ATTTTCCTTCTAA . 57.0 4.0 62.0 0.0 . 192 . . Atlas-SNP CPSF4L 642843 hgsc.bcm.edu hg19 17 71257927 71257927 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CPSF4L NM_001129885 exon1 c.T31C p.F11L AGGTGAACCGCTC . 62.0 4.0 95.0 0.0 . 8 . . Atlas-SNP KIF19 124602 hgsc.bcm.edu hg19 17 72324604 72324604 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIF19 NM_153209 exon2 c.A80G p.E27G AGCTGGAGGAAGG . 49.0 4.0 78.0 0.0 . 102 . . Atlas-SNP CD300C 10871 hgsc.bcm.edu hg19 17 72537867 72537867 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD300C NM_006678 exon4 c.T536C p.F179S TTGCTGAACAGGG . 55.0 4.0 76.0 0.0 . 41 . . Atlas-SNP SLC16A5 9121 hgsc.bcm.edu hg19 17 73100204 73100204 + Silent SNP G G C rs141647560 byfrequency;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SLC16A5_ENST00000450736,colon,carcinoma,+1,2 SLC16A5 NM_001271765 exon6 c.G1293C p.A431A CGCGGCGGATGCC . 133.0 39.0 176.0 0.0 . 80 . G|0.999;A|0.001 Atlas-SNP CASKIN2 57513 hgsc.bcm.edu hg19 17 73501024 73501024 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CASKIN2,NS,carcinoma,0,1 CASKIN2 NM_020753 exon11 c.C1061A p.A354D AGGCGGGCTGCAG . 71.0 3.0 97.0 2.0 . 66 . . Atlas-SNP LLGL2 3993 hgsc.bcm.edu hg19 17 73570325 73570325 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LLGL2 NM_004524 exon23 c.T2937C p.A979A GCGCGCTCTGCTC . 96.0 4.0 113.0 0.0 . 155 . . Atlas-SNP RECQL5 9400 hgsc.bcm.edu hg19 17 73657713 73657713 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RECQL5 NM_001003715 exon5 c.G847T p.G283C TCACACCCCTGCA . 56.0 4.0 73.0 0.0 . 77 . . Atlas-SNP EXOC7 23265 hgsc.bcm.edu hg19 17 74081819 74081819 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EXOC7 NM_001145297 exon15 c.C1708A p.P570T GAGCTGGGTCCTC . 91.0 4.0 127.0 0.0 . 47 . . Atlas-SNP TNRC6C 57690 hgsc.bcm.edu hg19 17 76045435 76045435 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNRC6C NM_018996 exon4 c.C292A p.L98I ATTAATCTTAACC . 114.0 5.0 188.0 0.0 . 173 . . Atlas-SNP TNRC6C 57690 hgsc.bcm.edu hg19 17 76046560 76046560 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TNRC6C NM_018996 exon4 c.G1417A p.D473N AAAAATGACAATG . 76.0 4.0 99.0 0.0 . 173 . . Atlas-SNP EIF4A3 9775 hgsc.bcm.edu hg19 17 78109863 78109863 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EIF4A3 NM_014740 exon11 c.C1159A p.R387S GGATGCGGATGTC . 58.0 4.0 81.0 0.0 . 35 . . Atlas-SNP RNF213 57674 hgsc.bcm.edu hg19 17 78341922 78341922 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RNF213 NM_001256071 exon44 c.C12134A p.P4045Q TCTCTCCAGCTGT . 110.0 5.0 138.0 0.0 . 766 . . Atlas-SNP C17orf70 80233 hgsc.bcm.edu hg19 17 79514378 79514378 + Missense_Mutation SNP C C A rs72854496 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C17orf70 NM_025161 exon5 c.G1730T p.R577L TCCCGCCGAGCAC . 45.0 4.0 42.0 0.0 . 79 . C|1.000;T|0.000 Atlas-SNP P4HB 5034 hgsc.bcm.edu hg19 17 79817083 79817083 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . P4HB NM_000918 exon2 c.A326G p.D109G GCCGTGTCTCCAT . 82.0 6.0 116.0 0.0 . 43 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80046286 80046286 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FASN NM_004104 exon16 c.C2573T p.S858L GCGGCTGAGGGGG . 40.0 4.0 54.0 0.0 . 154 . . Atlas-SNP EMILIN2 84034 hgsc.bcm.edu hg19 18 2891118 2891118 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EMILIN2 NM_032048 exon4 c.G993T p.E331D CATGGAGGGCATG . 78.0 5.0 88.0 0.0 . 97 . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 8378411 8378411 + Missense_Mutation SNP G G T rs202020478 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPRM NM_001105244 exon27 c.G3611T p.R1204L AATTCCGGGTAAG . 87.0 4.0 156.0 0.0 . 185 . G|0.999;A|0.001 Atlas-SNP PPP4R1 9989 hgsc.bcm.edu hg19 18 9557375 9557375 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PPP4R1 NM_001042388 exon15 c.A2034G p.K678K TCGAACTTTCCAC . 78.0 4.0 94.0 0.0 . 63 . . Atlas-SNP MC2R 4158 hgsc.bcm.edu hg19 18 13884772 13884772 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MC2R NM_000529 exon2 c.C746A p.P249H CAGTAGGGGTTAC . 94.0 4.0 171.0 0.0 . 78 . . Atlas-SNP ZNF519 162655 hgsc.bcm.edu hg19 18 14105088 14105088 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZNF519,NS,carcinoma,0,1 ZNF519 NM_145287 exon3 c.G1451T p.G484V TTCTCTCCAGTAT . 75.0 3.0 78.0 0.0 . 53 . . Atlas-SNP GREB1L 80000 hgsc.bcm.edu hg19 18 19079688 19079688 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GREB1L NM_001142966 exon22 c.3392-2A>G . TCTCACAGGTTCC . 67.0 4.0 77.0 0.0 . 69 . . Atlas-SNP NPC1 4864 hgsc.bcm.edu hg19 18 21120466 21120466 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NPC1 NM_000271 exon17 c.C2550A p.I850I GACTGCGATGCTG . 69.0 4.0 114.0 0.0 . 114 . . Atlas-SNP ZNF521 25925 hgsc.bcm.edu hg19 18 22804712 22804712 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZNF521,NS,carcinoma,0,1 ZNF521 NM_015461 exon4 c.G3170T p.R1057L TGGCCCCGCCCTG . 41.0 3.0 61.0 0.0 . 269 . . Atlas-SNP ZNF521 25925 hgsc.bcm.edu hg19 18 22806400 22806400 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZNF521,caecum,carcinoma,-1,1 ZNF521 NM_015461 exon4 c.A1482G p.E494E GATGTGTTCCTGA . 135.0 6.0 183.0 0.0 . 269 . . Atlas-SNP CDH2 1000 hgsc.bcm.edu hg19 18 25589802 25589802 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CDH2 NM_001792 exon5 c.G581T p.R194L CTGTACCGCAGTG . 61.0 4.0 85.0 0.0 . 194 . . Atlas-SNP ASXL3 80816 hgsc.bcm.edu hg19 18 31326158 31326158 + Missense_Mutation SNP G G T rs117661115 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ASXL3 NM_030632 exon12 c.G6346T p.A2116S GCATTCGCGCTAA . 96.0 4.0 114.0 0.0 . 405 . G|0.998;A|0.002 Atlas-SNP NOL4 8715 hgsc.bcm.edu hg19 18 31523052 31523052 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d NOL4,NS,carcinoma,0,1 NOL4 NM_003787 exon9 c.A1519G p.R507G GCATCCTCTTGGC . 65.0 4.0 89.0 0.0 . 139 . . Atlas-SNP MOCOS 55034 hgsc.bcm.edu hg19 18 33775243 33775243 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MOCOS NM_017947 exon2 c.G166T p.G56C CATGCAGGTGCCA . 99.0 4.0 92.0 0.0 . 84 . . Atlas-SNP LOXHD1 125336 hgsc.bcm.edu hg19 18 44190747 44190747 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LOXHD1 NM_144612 exon6 c.C751T p.L251L GGGACAGGAACCA . 79.0 4.0 83.0 0.0 . 367 . . Atlas-SNP ZBTB7C 201501 hgsc.bcm.edu hg19 18 45566520 45566520 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZBTB7C NM_001039360 exon2 c.G959T p.G320V AGAGGCCCCCCCG . 57.0 4.0 58.0 0.0 . 73 . . Atlas-SNP TCF4 6925 hgsc.bcm.edu hg19 18 52895541 52895541 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TCF4 NM_001243226 exon20 c.A2237G p.K746R GACACCTTCTCTT . 44.0 4.0 62.0 0.0 . 178 . . Atlas-SNP NEDD4L 23327 hgsc.bcm.edu hg19 18 56002763 56002763 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NEDD4L NM_001144967 exon13 c.A1119G p.E373E TGAGGAACCAACG . 115.0 5.0 110.0 0.0 . 126 . . Atlas-SNP PMAIP1 5366 hgsc.bcm.edu hg19 18 57569926 57569926 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PMAIP1 NM_021127 exon2 c.C106T p.L36L GACAAACTGAACT . 79.0 4.0 82.0 0.0 . 1 . . Atlas-SNP KDSR 2531 hgsc.bcm.edu hg19 18 61034244 61034244 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KDSR NM_002035 exon1 c.G108A p.V36V ACTCACCACCACA . 134.0 6.0 226.0 0.0 . 17 . . Atlas-SNP TSHZ1 10194 hgsc.bcm.edu hg19 18 72999514 72999514 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TSHZ1 NM_005786 exon2 c.C2017A p.P673T ACAGAGCCTCTCA . 64.0 4.0 85.0 0.0 . 104 . . Atlas-SNP MEX3D 399664 hgsc.bcm.edu hg19 19 1556545 1556545 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MEX3D NM_203304 exon2 c.G973A p.E325K CGTTCTCGGGCAT . 89.0 4.0 75.0 0.0 . 11 . . Atlas-SNP TCF3 6929 hgsc.bcm.edu hg19 19 1611812 1611812 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TCF3 NM_003200 exon19 c.G1859T p.R620L TCTCGCCGTTTCA . 122.0 5.0 168.0 0.0 . 72 . . Atlas-SNP ADAT3 113179 hgsc.bcm.edu hg19 19 1912939 1912939 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADAT3 NM_138422 exon2 c.A893G p.Y298C CTGGCTACGACCT . 87.0 4.0 53.0 0.0 . 15 . . Atlas-SNP MOB3A 126308 hgsc.bcm.edu hg19 19 2076903 2076903 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_130807 exon4 c.G531A p.M177I GGAGCCCATCTGC . 147.0 6.0 99.0 0.0 . . . . Atlas-SNP TMPRSS9 360200 hgsc.bcm.edu hg19 19 2413833 2413833 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TMPRSS9 NM_182973 exon9 c.T1288C p.W430R CGTGACTGGATCC . 96.0 4.0 116.0 0.0 . 79 . . Atlas-SNP UBXN6 80700 hgsc.bcm.edu hg19 19 4448329 4448329 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UBXN6 NM_025241 exon5 c.G525T p.V175V GGTGTCCACACCC . 65.0 4.0 71.0 0.0 . 27 . . Atlas-SNP DPP9 91039 hgsc.bcm.edu hg19 19 4700261 4700261 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DPP9 NM_139159 exon10 c.A1041G p.K347K AGCCAGTTTCAAG . 94.0 5.0 87.0 0.0 . 59 . . Atlas-SNP FEM1A 55527 hgsc.bcm.edu hg19 19 4792961 4792961 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FEM1A NM_018708 exon1 c.C1095A p.T365T GATCACCGACCCG . 53.0 5.0 37.0 0.0 . 41 . . Atlas-SNP PTPRS 5802 hgsc.bcm.edu hg19 19 5208037 5208037 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPRS NM_002850 exon37 c.A5674G p.T1892A TAAGCGTGATGAA . 52.0 4.0 63.0 0.0 . 169 . . Atlas-SNP PTPRS 5802 hgsc.bcm.edu hg19 19 5216748 5216748 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PTPRS NM_002850 exon26 c.C4079T p.P1360L AACCCCGGCTCCC . 369.0 69.0 460.0 0.0 . 169 . . Atlas-SNP MLLT1 4298 hgsc.bcm.edu hg19 19 6222582 6222582 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MLLT1 NM_005934 exon6 c.T660C p.R220R CTGCTCACGCTCC . 71.0 5.0 58.0 0.0 . 47 . . Atlas-SNP SLC25A23 79085 hgsc.bcm.edu hg19 19 6456473 6456473 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC25A23 NM_024103 exon4 c.G441A p.L147L ATTTTCCAGCGAA . 64.0 4.0 103.0 0.0 . 43 . . Atlas-SNP ZNF557 79230 hgsc.bcm.edu hg19 19 7083073 7083073 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF557 NM_001044387 exon8 c.G611T p.G204V ACAATGGGGAGAA . 99.0 4.0 158.0 0.0 . 40 . . Atlas-SNP TRAPPC5 126003 hgsc.bcm.edu hg19 19 7747234 7747234 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TRAPPC5 NM_001042461 exon2 c.T95C p.L32P CACTGCTGTTCTC . 45.0 4.0 83.0 0.0 . 11 . . Atlas-SNP CLEC4M 10332 hgsc.bcm.edu hg19 19 7830731 7830731 + Missense_Mutation SNP G G A rs76899402 bycluster TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CLEC4M,colon,carcinoma,0,1 CLEC4M NM_001144908 exon4 c.G422A p.R141Q TGACCCGGCTGAA . 31.0 3.0 19.0 0.0 . 58 . G|0.250;A|0.750 Atlas-SNP MAP2K7 5609 hgsc.bcm.edu hg19 19 7975215 7975215 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MAP2K7 NM_145185 exon4 c.G404T p.W135L AGGTGTGGAAGAT . 96.0 4.0 135.0 0.0 . 66 . . Atlas-SNP TIMM44 10469 hgsc.bcm.edu hg19 19 7999080 7999080 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TIMM44 NM_006351 exon5 c.A437G p.K146R CCCTCCTTGATTT . 93.0 4.0 119.0 0.0 . 47 . . Atlas-SNP ELAVL1 1994 hgsc.bcm.edu hg19 19 8056658 8056658 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ELAVL1 NM_001419 exon2 c.G42T p.R14S GTCACCCCTGCAG . 111.0 5.0 150.0 0.0 . 44 . . Atlas-SNP CD320 51293 hgsc.bcm.edu hg19 19 8370014 8370014 + Missense_Mutation SNP T T A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD320 NM_016579 exon2 c.A169T p.T57S ACTTGGTGGGTGG . 75.0 4.0 67.0 0.0 . 20 . . Atlas-SNP FBXL12 54850 hgsc.bcm.edu hg19 19 9922014 9922014 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d FBXL12,NS,carcinoma,0,1 FBXL12 NM_017703 exon3 c.C539A p.S180X ACCAGCGAGCGCA . 42.0 2.0 44.0 0.0 . 17 . . Atlas-SNP ECSIT 51295 hgsc.bcm.edu hg19 19 11625035 11625035 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ECSIT NM_001142464 exon3 c.T98C p.V33A CGAGGGACCTGGG . 65.0 4.0 82.0 0.0 . 32 . . Atlas-SNP MAN2B1 4125 hgsc.bcm.edu hg19 19 12775761 12775761 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d MAN2B1,NS,carcinoma,0,1 MAN2B1 NM_001173498 exon4 c.G475A p.D159N CCTCATCGTTCAT . 29.0 2.0 53.0 0.0 . 91 . . Atlas-SNP GIPC1 10755 hgsc.bcm.edu hg19 19 14589371 14589371 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GIPC1 NM_202468 exon8 c.A859G p.M287V CCACCATGGTGGC . 107.0 6.0 149.0 0.0 . 21 . . Atlas-SNP NOTCH3 4854 hgsc.bcm.edu hg19 19 15281634 15281634 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NOTCH3 NM_000435 exon26 c.C4739A p.S1580X ACTACCGAGCTGC . 58.0 4.0 108.0 0.0 . 340 . . Atlas-SNP WIZ 58525 hgsc.bcm.edu hg19 19 15533977 15533977 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WIZ NM_021241 exon8 c.C2295T p.H765H CAGGATGTGCCGC . 55.0 4.0 72.0 0.0 . 152 . . Atlas-SNP EPS15L1 58513 hgsc.bcm.edu hg19 19 16488025 16488025 + Missense_Mutation SNP G G A rs369284918 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EPS15L1 NM_021235 exon22 c.C2288T p.A763V AATCCTGCCCCTC . 89.0 4.0 97.0 0.0 . 81 . . Atlas-SNP UNC13A 23025 hgsc.bcm.edu hg19 19 17785490 17785490 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UNC13A NM_001080421 exon3 c.C128A p.P43H CAGCTGGGCTGGC . 75.0 4.0 90.0 0.0 . 299 . . Atlas-SNP UNC13A 23025 hgsc.bcm.edu hg19 19 17785532 17785532 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UNC13A NM_001080421 exon3 c.A86G p.Q29R ACATTCTGCACTT . 87.0 4.0 131.0 0.0 . 299 . . Atlas-SNP IL12RB1 3594 hgsc.bcm.edu hg19 19 18183013 18183013 + Silent SNP C C A rs144647048 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IL12RB1 NM_153701 exon9 c.G930T p.S310S AGCACCCGAGAGA . 95.0 4.0 118.0 0.0 . 92 . C|1.000;T|0.000 Atlas-SNP ZNF90 7643 hgsc.bcm.edu hg19 19 20228952 20228952 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF90 NM_007138 exon4 c.G589T p.G197X CATACTGGAGAGA . 58.0 4.0 86.0 0.0 . 93 . . Atlas-SNP ZNF85 7639 hgsc.bcm.edu hg19 19 21132473 21132473 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF85 NM_001256171 exon5 c.C1243A p.L415I TCACACCTTACTA . 72.0 4.0 82.0 0.0 . 72 . . Atlas-SNP ZNF431 170959 hgsc.bcm.edu hg19 19 21366793 21366793 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF431 NM_133473 exon5 c.T1687C p.W563R TCATACTGGAGAG . 99.0 4.0 157.0 0.0 . 71 . . Atlas-SNP ZNF708 7562 hgsc.bcm.edu hg19 19 21476562 21476562 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d .,1 ZNF708 NM_021269 exon4 c.C1206A p.T402T GGACTTGGTAAAG . 59.0 3.0 77.0 0.0 . 66 . . Atlas-SNP ZNF429 353088 hgsc.bcm.edu hg19 19 21712459 21712459 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF429 NM_001001415 exon2 c.4-1G>T . GTTTCAGGGACCA . 59.0 4.0 109.0 0.0 . 338 . . Atlas-SNP ZNF429 353088 hgsc.bcm.edu hg19 19 21720450 21720450 + Missense_Mutation SNP C C G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZNF429,colon,carcinoma,0,2 ZNF429 NM_001001415 exon4 c.C1595G p.T532S TTCATACTGGAGA . 29.0 2.0 49.0 2.0 . 338 . . Atlas-SNP ZNF429 353088 hgsc.bcm.edu hg19 19 21720666 21720666 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZNF429,caecum,carcinoma,+1,1 ZNF429 NM_001001415 exon4 c.G1811T p.R604L TTAATCGGTCCTC . 74.0 3.0 82.0 0.0 . 338 . . Atlas-SNP ZNF208 7757 hgsc.bcm.edu hg19 19 22155050 22155050 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF208 NM_007153 exon4 c.T2786C p.L929S ACTGACAACCAGC . 127.0 6.0 179.0 0.0 . 817 . . Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23544210 23544210 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF91 NM_003430 exon4 c.G1571A p.G524D GCTTTGCCACATT . 89.0 4.0 77.0 0.0 . 349 . . Atlas-SNP ZNF675 171392 hgsc.bcm.edu hg19 19 23836432 23836432 + Silent SNP G G T rs199957959 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF675 NM_138330 exon4 c.C1303A p.R435R AGGATCGGTTAAA . 33.0 4.0 54.0 0.0 . 88 . G|0.999;A|0.001 Atlas-SNP DPY19L3 147991 hgsc.bcm.edu hg19 19 32968497 32968497 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DPY19L3 NM_001172774 exon17 c.G1767T p.T589T GTGCACGGGAAGG . 80.0 5.0 120.0 0.0 . 70 . . Atlas-SNP WDR88 126248 hgsc.bcm.edu hg19 19 33647426 33647426 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDR88 NM_173479 exon7 c.T975C p.S325S TGTCAGTTCCTGT . 100.0 4.0 93.0 0.0 . 50 . . Atlas-SNP CD22 933 hgsc.bcm.edu hg19 19 35832318 35832318 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CD22 NM_001185100 exon8 c.T1580C p.L527P TCAGCCTCCAATG . 64.0 4.0 33.0 0.0 . 129 . . Atlas-SNP ATP4A 495 hgsc.bcm.edu hg19 19 36051450 36051450 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ATP4A NM_000704 exon6 c.T602C p.L201P TCCACCAGGTCGC . 48.0 4.0 65.0 0.0 . 123 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36229093 36229093 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MLL4 NM_014727 exon36 c.7872+1G>T . GGGAAGGTGGGCT . 46.0 16.0 123.0 0.0 . 229 . . Atlas-SNP POLR2I 5438 hgsc.bcm.edu hg19 19 36605106 36605106 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . POLR2I NM_006233 exon4 c.C236A p.P79Q GTCCGCGGCAACG . 123.0 7.0 129.0 0.0 . 10 . . Atlas-SNP ZNF565 147929 hgsc.bcm.edu hg19 19 36685225 36685225 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF565 NM_001042474 exon4 c.T142C p.S48P AAATGGAGAGTCC . 73.0 4.0 104.0 0.0 . 46 . . Atlas-SNP ZNF345 25850 hgsc.bcm.edu hg19 19 37368101 37368101 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF345 NM_001242476 exon4 c.T369C p.C123C AGAATGTGGGAAG . 99.0 4.0 98.0 0.0 . 68 . . Atlas-SNP ZNF585B 92285 hgsc.bcm.edu hg19 19 37677107 37677107 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF585B NM_152279 exon5 c.G1332A p.G444G CAATTTCCCACAG . 198.0 61.0 243.0 0.0 . 91 . . Atlas-SNP RASGRP4 115727 hgsc.bcm.edu hg19 19 38903605 38903605 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RASGRP4 NM_170604 exon12 c.G1501A p.A501T GGCAGGCGAAGGG . 42.0 4.0 81.0 0.0 . 54 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38959769 38959769 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RYR1 NM_001042723 exon26 c.A3545G p.E1182G AGATTGAGATTGG . 86.0 4.0 96.0 0.0 . 708 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38976759 38976759 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d RYR1,NS,carcinoma,0,1 RYR1 NM_001042723 exon34 c.G5464T p.G1822C CGCGACGGTGGGC . 34.0 2.0 57.0 0.0 . 708 . . Atlas-SNP ACTN4 81 hgsc.bcm.edu hg19 19 39214663 39214663 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ACTN4 NM_004924 exon14 c.C1638A p.S546R GGAGAGCGCCATG . 94.0 4.0 145.0 0.0 . 69 . . Atlas-SNP HNRNPL 3191 hgsc.bcm.edu hg19 19 39336338 39336338 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HNRNPL NM_001533 exon4 c.T662C p.V221A CTCTGGACAGGGC . 66.0 4.0 79.0 0.0 . 67 . . Atlas-SNP PLEKHG2 64857 hgsc.bcm.edu hg19 19 39913584 39913584 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLEKHG2 NM_022835 exon18 c.C1890T p.P630P CATTCCCTGCCTT . 94.0 4.0 141.0 0.0 . 329 . . Atlas-SNP AKT2 208 hgsc.bcm.edu hg19 19 40743931 40743931 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AKT2 NM_001626 exon9 c.T776C p.I259T GAGACAATCTCTG . 82.0 4.0 128.0 0.0 . 53 . . Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 41038617 41038617 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SPTBN4,NS,carcinoma,0,1 SPTBN4 NM_020971 exon19 c.G4034A p.R1345Q GGCTCCGGCACCA . 69.0 3.0 118.0 0.0 . 213 . . Atlas-SNP ADCK4 79934 hgsc.bcm.edu hg19 19 41206291 41206291 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ADCK4 NM_024876 exon11 c.G959T p.R320L AGCACCCGTGTCG . 77.0 29.0 109.0 0.0 . 92 . . Atlas-SNP EGLN2 112398 hgsc.bcm.edu hg19 19 41306565 41306565 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EGLN2 NM_053046 exon2 c.G88A p.G30S GAGCCTGGCCGGG . 96.0 4.0 108.0 0.0 . 31 . . Atlas-SNP BCKDHA 593 hgsc.bcm.edu hg19 19 41916689 41916689 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d BCKDHA,colon,carcinoma,0,1 BCKDHA NM_000709 exon2 c.G256A p.G86S CGGCAAGGCCAGA . 95.0 4.0 117.0 0.0 . 36 . . Atlas-SNP PSG9 5678 hgsc.bcm.edu hg19 19 43766182 43766182 + Missense_Mutation SNP C C A rs149244305 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d PSG9,arm,malignant_melanoma,0,1 PSG9 NM_002784 exon3 c.G539T p.W180L ATCCACCATAGGT . 122.0 5.0 242.0 0.0 . 77 . . Atlas-SNP PHLDB3 653583 hgsc.bcm.edu hg19 19 43998856 43998856 + Nonsense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PHLDB3 NM_198850 exon9 c.C1147T p.Q383X GCACCTGCAGGGA . 96.0 4.0 157.0 0.0 . 30 . . Atlas-SNP ZNF229 7772 hgsc.bcm.edu hg19 19 44934658 44934658 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF229 NM_014518 exon6 c.C298A p.H100N CTTTGTGTGAAAA . 95.0 4.0 118.0 0.0 . 123 . . Atlas-SNP CLPTM1 1209 hgsc.bcm.edu hg19 19 45489769 45489769 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CLPTM1 NM_001294 exon7 c.C729A p.T243T CATCACCATCAAC . 72.0 4.0 93.0 0.0 . 109 . . Atlas-SNP KLC3 147700 hgsc.bcm.edu hg19 19 45850019 45850019 + Missense_Mutation SNP C C A rs76874841 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLC3 NM_177417 exon3 c.C476A p.P159Q ACCCACCGGCGGA . 65.0 4.0 102.0 0.0 . 37 . C|0.998;G|0.002 Atlas-SNP ERCC2 2068 hgsc.bcm.edu hg19 19 45871940 45871940 + Missense_Mutation SNP G G T rs142462393 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ERCC2 NM_000400 exon5 c.C308A p.P103Q AGAAACGGCAGCT . 86.0 4.0 125.0 0.0 . 78 . G|1.000;A|0.000 Atlas-SNP ERCC1 2067 hgsc.bcm.edu hg19 19 45920105 45920105 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ERCC1 NM_001983 exon6 c.C576A p.A192A GCAGTCGGCCAGG . 77.0 4.0 111.0 0.0 . 46 . . Atlas-SNP PPM1N 147699 hgsc.bcm.edu hg19 19 46003767 46003767 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PPM1N NM_001080401 exon3 c.C1111A p.L371M AGGACTCTGGCCT . 91.0 4.0 108.0 0.0 . 25 . . Atlas-SNP MEIS3 56917 hgsc.bcm.edu hg19 19 47920594 47920594 + Missense_Mutation SNP G G T rs200901098 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MEIS3 NM_001009813 exon2 c.C26A p.P9Q TAGTGCGGCAGCT . 99.0 4.0 121.0 0.0 . 40 . G|1.000;A|0.000 Atlas-SNP GLTSCR2 29997 hgsc.bcm.edu hg19 19 48259071 48259071 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GLTSCR2 NM_015710 exon10 c.A1288G p.T430A CTCAGGACCCTGA . 94.0 4.0 134.0 0.0 . 45 . . Atlas-SNP TPRX1 284355 hgsc.bcm.edu hg19 19 48305658 48305658 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d TPRX1,caecum,carcinoma,0,1 TPRX1 NM_198479 exon2 c.C610T p.P204S GGCCTGGGATCGG . 86.0 5.0 97.0 1.0 . 46 . . Atlas-SNP PLA2G4C 8605 hgsc.bcm.edu hg19 19 48609797 48609797 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLA2G4C NM_001159322 exon2 c.C51A p.T17T CACTGCGGTCAGA . 121.0 5.0 200.0 0.0 . 76 . . Atlas-SNP PPFIA3 8541 hgsc.bcm.edu hg19 19 49632641 49632641 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PPFIA3 NM_003660 exon5 c.G512T p.R171L AGGTCCGGGAGCG . 113.0 5.0 133.0 0.0 . 71 . . Atlas-SNP RPL13A 23521 hgsc.bcm.edu hg19 19 49994320 49994320 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RPL13A NM_012423 exon6 c.T366C p.A122A TCCTGCTGCCCTC . 85.0 4.0 100.0 0.0 . 13 . . Atlas-SNP MYH14 79784 hgsc.bcm.edu hg19 19 50792838 50792838 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYH14 NM_001145809 exon35 c.A4898G p.Q1633R AGACTCAGCATGA . 70.0 4.0 82.0 0.0 . 261 . . Atlas-SNP MYH14 79784 hgsc.bcm.edu hg19 19 50794172 50794172 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MYH14 NM_001145809 exon36 c.A4994G p.E1665G GGGATGAGGAGCG . 99.0 4.0 151.0 0.0 . 261 . . Atlas-SNP KLK7 5650 hgsc.bcm.edu hg19 19 51485084 51485084 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KLK7 NM_139277 exon3 c.C160T p.H54Y CGCAGTGGAGCTG . 54.0 4.0 136.0 0.0 . 40 . . Atlas-SNP KLK9 284366 hgsc.bcm.edu hg19 19 51506518 51506518 + Splice_Site SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d KLK9,colon,carcinoma,0,1 KLK9 NM_012315 exon6 c.604-2A>G . TCACCCTGTACGC . 35.0 2.0 55.0 0.0 . 27 . . Atlas-SNP ZNF841 284371 hgsc.bcm.edu hg19 19 52569527 52569527 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF841 NM_001136499 exon7 c.C1608A p.T536T CTCTCCGGTATGA . 79.0 4.0 74.0 0.0 . 183 . . Atlas-SNP ZNF841 284371 hgsc.bcm.edu hg19 19 52570470 52570470 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF841 NM_001136499 exon7 c.C665A p.P222Q TGAAGTGGTGAAG . 76.0 4.0 103.0 0.0 . 183 . . Atlas-SNP ZNF460 10794 hgsc.bcm.edu hg19 19 57802158 57802158 + Silent SNP A A G rs368592252 TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF460 NM_006635 exon3 c.A249G p.G83G ACAGGGAGTCCCA . 80.0 4.0 111.0 0.0 . 59 . . Atlas-SNP ZNF587B 100293516 hgsc.bcm.edu hg19 19 58352852 58352852 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_001204818 exon3 c.T810C p.Y270Y ACCTTATGAATGT . 97.0 4.0 125.0 0.0 . . . . Atlas-SNP ZNF418 147686 hgsc.bcm.edu hg19 19 58438656 58438656 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF418 NM_133460 exon4 c.A893G p.K298R CTGCCCTTATGAC . 100.0 4.0 117.0 0.0 . 76 . . Atlas-SNP ZSCAN1 284312 hgsc.bcm.edu hg19 19 58565111 58565111 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d ZSCAN1,right_upper_lobe,carcinoma,0,1 ZSCAN1 NM_182572 exon6 c.T919C p.F307L ACCCACTTCATCG . 73.0 3.0 88.0 0.0 . 102 . . Atlas-SNP ZNF132 7691 hgsc.bcm.edu hg19 19 58945140 58945140 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF132 NM_003433 exon3 c.T1671C p.T557T AATGAGAGTGGAG . 91.0 4.0 166.0 0.0 . 56 . . Atlas-SNP ZNF446 55663 hgsc.bcm.edu hg19 19 58988926 58988926 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF446 NM_017908 exon2 c.G341T p.W114L TGGGCTGGGTGAG . 90.0 4.0 105.0 0.0 . 22 . . Atlas-SNP RBCK1 10616 hgsc.bcm.edu hg19 20 400215 400215 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . RBCK1 NM_031229 exon6 c.G596A p.C199Y GGCAGTGCCCCGG . 61.0 4.0 95.0 0.0 . 38 . . Atlas-SNP C20orf141 128653 hgsc.bcm.edu hg19 20 2796266 2796266 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C20orf141 NM_080739 exon2 c.G343T p.E115X CAGCAGGAGGCTC . 90.0 4.0 120.0 0.0 . 21 . . Atlas-SNP TASP1 55617 hgsc.bcm.edu hg19 20 13371068 13371068 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TASP1 NM_017714 exon14 c.T1202C p.V401A CCTGCCACCGCAC . 65.0 4.0 77.0 0.0 . 52 . . Atlas-SNP PCSK2 5126 hgsc.bcm.edu hg19 20 17462588 17462588 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PCSK2 NM_002594 exon12 c.C1790T p.A597V AGAGTGCCCCGTA . 75.0 4.0 126.0 0.0 . 112 . . Atlas-SNP C20orf26 26074 hgsc.bcm.edu hg19 20 20055874 20055874 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . C20orf26 NM_015585 exon5 c.T413C p.L138P TATTTCTCATCGT . 140.0 42.0 218.0 0.0 . 188 . . Atlas-SNP GZF1 64412 hgsc.bcm.edu hg19 20 23345335 23345335 + Silent SNP G G T rs376361468 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GZF1 NM_022482 exon1 c.G315T p.R105R AGATCGGGTGCAG . 93.0 4.0 123.0 0.0 . 61 . . Atlas-SNP NINL 22981 hgsc.bcm.edu hg19 20 25498459 25498459 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NINL NM_025176 exon3 c.T207C p.G69G CACAAAACCTTCC . 99.0 4.0 147.0 0.0 . 148 . . Atlas-SNP ZNF337 26152 hgsc.bcm.edu hg19 20 25656557 25656557 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF337 NM_015655 exon5 c.A1367G p.E456G TTCTCCTCTGAGT . 96.0 4.0 136.0 0.0 . 65 . . Atlas-SNP TTLL9 164395 hgsc.bcm.edu hg19 20 30521650 30521650 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TTLL9 NM_001008409 exon11 c.C796A p.H266N GACTACCACCCAA . 98.0 4.0 123.0 0.0 . 95 . . Atlas-SNP TM9SF4 9777 hgsc.bcm.edu hg19 20 30734649 30734649 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TM9SF4 NM_014742 exon9 c.G945T p.E315D CAAGGAGGATGAC . 95.0 5.0 108.0 0.0 . 65 . . Atlas-SNP DNMT3B 1789 hgsc.bcm.edu hg19 20 31367950 31367950 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DNMT3B NM_175850 exon1 c.T29C p.L10S CAAGCTTGGTGAG . 66.0 4.0 84.0 0.0 . 196 . . Atlas-SNP BPIFB1 92747 hgsc.bcm.edu hg19 20 31889200 31889200 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_033197 exon9 c.G909A p.M303I ATTCATGGTCCTG . 58.0 4.0 75.0 0.0 . . . . Atlas-SNP ZNF341 84905 hgsc.bcm.edu hg19 20 32328755 32328755 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF341 NM_032819 exon2 c.C79A p.Q27K GATGGCCAAGGAG . 55.0 4.0 105.0 0.0 . 73 . . Atlas-SNP UQCC 55245 hgsc.bcm.edu hg19 20 33981955 33981955 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . UQCC NM_018244 exon2 c.A69G p.R23R TATCAATCGGCTG . 98.0 4.0 132.0 0.0 . 41 . . Atlas-SNP TGM2 7052 hgsc.bcm.edu hg19 20 36766769 36766769 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TGM2 NM_198951 exon10 c.A1361G p.E454G AAGGCCTCCCTCT . 94.0 4.0 127.0 0.0 . 88 . . Atlas-SNP LPIN3 64900 hgsc.bcm.edu hg19 20 39986061 39986061 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LPIN3 NM_022896 exon16 c.C2013A p.I671I GGGCATCACCAGT . 65.0 5.0 66.0 0.0 . 69 . . Atlas-SNP SNX21 90203 hgsc.bcm.edu hg19 20 44469556 44469556 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SNX21,colon,carcinoma,0,1 SNX21 NM_033421 exon4 c.G726T p.P242P GCTGCCGGAGCTG . 90.0 5.0 99.0 2.0 . 23 . . Atlas-SNP SLC12A5 57468 hgsc.bcm.edu hg19 20 44676618 44676618 + Splice_Site SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLC12A5 NM_001134771 exon16 c.1977-2A>G . GCTCCCAGGGCAG . 42.0 4.0 60.0 0.0 . 181 . . Atlas-SNP OCSTAMP 128506 hgsc.bcm.edu hg19 20 45174433 45174433 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . OCSTAMP NM_080721 exon2 c.T580C p.S194P AGGCAGAGCCATT . 92.0 5.0 108.0 0.0 . 34 . . Atlas-SNP PTPN1 5770 hgsc.bcm.edu hg19 20 49197898 49197898 + Silent SNP C C A rs150584289 bycluster;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d PTPN1,NS,carcinoma,0,1 PTPN1 NM_002827 exon9 c.C1185A p.P395P ACTGCCCGAGAAG . 68.0 3.0 142.0 0.0 . 36 . C|1.000;T|0.000 Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58468228 58468228 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SYCP2 NM_014258 exon21 c.T1762C p.S588P CCTGTGAATCTGG . 84.0 4.0 87.0 0.0 . 204 . . Atlas-SNP GRIK1 2897 hgsc.bcm.edu hg19 21 30971254 30971254 + Silent SNP G G T rs113829116 bycluster;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GRIK1 NM_175611 exon8 c.C1102A p.R368R CCCACCGGGCCTG . 45.0 4.0 48.0 0.0 . 293 . G|1.000;A|0.000 Atlas-SNP TIAM1 7074 hgsc.bcm.edu hg19 21 32639202 32639202 + Silent SNP G G T rs139712298 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . TIAM1 NM_003253 exon5 c.C87A p.S29S GCGCAGGGAGCGG . 41.0 4.0 87.0 0.0 . 522 . G|0.999;A|0.001 Atlas-SNP SCAF4 57466 hgsc.bcm.edu hg19 21 33068944 33068944 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SCAF4 NM_020706 exon8 c.C897A p.T299T GGTGGCGGTGGGT . 114.0 5.0 147.0 0.0 . 142 . . Atlas-SNP SLC5A3 6526 hgsc.bcm.edu hg19 21 35469094 35469094 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SLC5A3,rectum,NS,0,1 SLC5A3 NM_006933 exon2 c.A1597T p.T533S CTTCTCACACCAC . 100.0 5.0 146.0 0.0 . 52 . . Atlas-SNP PSMG1 8624 hgsc.bcm.edu hg19 21 40553799 40553799 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PSMG1 NM_203433 exon2 c.T140C p.V47A AGCCGCACTTCCC . 89.0 6.0 94.0 0.0 . 11 . . Atlas-SNP HMGN1 3150 hgsc.bcm.edu hg19 21 40717157 40717157 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . HMGN1 NM_004965 exon5 c.G170T p.G57V TTTGCTCCCCTTT . 118.0 5.0 151.0 0.0 . 8 . . Atlas-SNP KRTAP10-7 386675 hgsc.bcm.edu hg19 21 46020985 46020985 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KRTAP10-7 NM_198689 exon2 c.C449A p.P150H CCTCCCCCTGCCA . 437.0 120.0 630.0 0.0 . 41 . . Atlas-SNP LSS 4047 hgsc.bcm.edu hg19 21 47616149 47616149 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LSS NM_001001438 exon18 c.G1703T p.R568L TGCCGCCGACAGA . 41.0 4.0 72.0 0.0 . 50 . . Atlas-SNP LSS 4047 hgsc.bcm.edu hg19 21 47647541 47647541 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . LSS NM_001145436 exon3 c.A244G p.T82A AAAATGTCATCCC . 89.0 4.0 148.0 0.0 . 50 . . Atlas-SNP MCM3AP 8888 hgsc.bcm.edu hg19 21 47680812 47680812 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MCM3AP NM_003906 exon15 c.A3476G p.Q1159R CTCTCTTGTTTCA . 54.0 4.0 122.0 0.0 . 146 . . Atlas-SNP DGCR14 8220 hgsc.bcm.edu hg19 22 19126802 19126802 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DGCR14 NM_022719 exon6 c.T692C p.V231A TCAGGGACACCTG . 78.0 4.0 61.0 0.0 . 43 . . Atlas-SNP CCDC116 164592 hgsc.bcm.edu hg19 22 21989356 21989356 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC116 NM_152612 exon4 c.T1004C p.L335P GTCCTCTGTTCCC . 60.0 6.0 103.0 0.0 . 56 . . Atlas-SNP SDF2L1 23753 hgsc.bcm.edu hg19 22 21998435 21998435 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SDF2L1 NM_022044 exon3 c.G637T p.E213X AGTGTGGAGCCCT . 87.0 4.0 110.0 0.0 . 5 . . Atlas-SNP PIWIL3 440822 hgsc.bcm.edu hg19 22 25153957 25153957 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PIWIL3 NM_001008496 exon4 c.G273T p.Q91H TCTCTCCTGCAAG . 122.0 5.0 156.0 0.0 . 115 . . Atlas-SNP SGSM1 129049 hgsc.bcm.edu hg19 22 25280066 25280066 + Silent SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SGSM1 NM_133454 exon16 c.A1707G p.S569S CCTATCAGCCCTG . 68.0 4.0 72.0 0.0 . 150 . . Atlas-SNP TTC28 23331 hgsc.bcm.edu hg19 22 28389367 28389367 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d .,1 TTC28 NM_001145418 exon18 c.C5384T p.P1795L CTGGTTGGGGGGT . 59.0 3.0 62.0 0.0 . 84 . . Atlas-SNP ZNRF3 84133 hgsc.bcm.edu hg19 22 29445350 29445350 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNRF3 NM_001206998 exon8 c.T1181C p.V394A ACCCCGTCACCTT . 101.0 5.0 80.0 0.0 . 75 . . Atlas-SNP GAS2L1 10634 hgsc.bcm.edu hg19 22 29706428 29706428 + Splice_Site SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GAS2L1 NM_152237 exon3 c.634-1G>T . GCCTCAGGTGAGG . 173.0 72.0 129.0 0.0 . 54 . . Atlas-SNP PRR14L 253143 hgsc.bcm.edu hg19 22 32084215 32084215 + Splice_Site SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PRR14L NM_173566 exon9 c.6108-2A>G . TTAACCTGAAAAG . 80.0 4.0 100.0 0.0 . 198 . . Atlas-SNP DEPDC5 9681 hgsc.bcm.edu hg19 22 32275652 32275652 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d DEPDC5,NS,carcinoma,0,1 DEPDC5 NM_001242896 exon38 c.T3947C p.L1316P CCTGGCTGCCTAG . 46.0 4.0 66.0 1.0 . 266 . . Atlas-SNP PICK1 9463 hgsc.bcm.edu hg19 22 38465060 38465060 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PICK1 NM_012407 exon6 c.C370A p.R124R AAGCACCGGCTGG . 92.0 4.0 111.0 0.0 . 30 . . Atlas-SNP PLA2G6 8398 hgsc.bcm.edu hg19 22 38536052 38536052 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLA2G6 NM_003560 exon5 c.G734T p.R245L TTGCACCGAGCAT . 73.0 4.0 73.0 0.0 . 54 . . Atlas-SNP DDX17 10521 hgsc.bcm.edu hg19 22 38897259 38897259 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DDX17 NM_006386 exon2 c.T314C p.L105P GGGGGAAGGCCAC . 73.0 4.0 63.0 0.0 . 73 . . Atlas-SNP CBX7 23492 hgsc.bcm.edu hg19 22 39530449 39530449 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d CBX7,caecum,carcinoma,0,1 CBX7 NM_175709 exon5 c.G555A p.A185A GCCAGCCGCCTGC . 56.0 20.0 88.0 0.0 . 18 . . Atlas-SNP RPL3 6122 hgsc.bcm.edu hg19 22 39711541 39711541 + Missense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d RPL3,NS,carcinoma,0,1 RPL3 NM_000967 exon5 c.G521A p.R174H TTCTGGCGCAGAG . 45.0 2.0 74.0 0.0 . 29 . . Atlas-SNP FAM83F 113828 hgsc.bcm.edu hg19 22 40415332 40415332 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d FAM83F,NS,carcinoma,0,2 FAM83F NM_138435 exon2 c.G650A p.R217Q ACTTCCGGATTCG . 74.0 3.0 110.0 0.0 . 29 . . Atlas-SNP SGSM3 27352 hgsc.bcm.edu hg19 22 40803030 40803030 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SGSM3 NM_015705 exon11 c.C1195A p.R399S GTTCGCCGCAGGA . 70.0 4.0 108.0 0.0 . 48 . . Atlas-SNP SGSM3 27352 hgsc.bcm.edu hg19 22 40803251 40803251 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d SGSM3,NS,carcinoma,0,1 SGSM3 NM_015705 exon12 c.G1287T p.T429T GCAGACGGAACTG . 94.0 6.0 113.0 0.0 . 48 . . Atlas-SNP EP300 2033 hgsc.bcm.edu hg19 22 41573037 41573037 + Missense_Mutation SNP A A T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . EP300 NM_001429 exon31 c.A5322T p.K1774N ACGGAAAACCAAT . 85.0 6.0 78.0 0.0 . 367 . . Atlas-SNP PARVB 29780 hgsc.bcm.edu hg19 22 44564512 44564512 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PARVB NM_001003828 exon14 c.T1148C p.L383P CCACCCTGAGGGT . 94.0 4.0 177.0 0.0 . 44 . . Atlas-SNP WNT7B 7477 hgsc.bcm.edu hg19 22 46319021 46319021 + Silent SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WNT7B NM_058238 exon4 c.A765G p.K255K CAGCTGTTTGATG . 86.0 4.0 149.0 0.0 . 45 . . Atlas-SNP GTSE1 51512 hgsc.bcm.edu hg19 22 46704834 46704834 + Silent SNP G G T rs200502529 alternate_allele TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GTSE1 NM_016426 exon4 c.G756T p.A252A GGCTGCGGAGAAG . 64.0 4.0 112.0 0.0 . 100 . G|0.999;A|0.001 Atlas-SNP IL17REL 400935 hgsc.bcm.edu hg19 22 50438927 50438927 + Missense_Mutation SNP T T C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IL17REL NM_001001694 exon6 c.A314G p.D105G CTCTGGTCCAGCT . 85.0 4.0 91.0 0.0 . 21 . . Atlas-SNP PLXNB2 23654 hgsc.bcm.edu hg19 22 50720691 50720691 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLXNB2 NM_012401 exon19 c.G3039A p.R1013R GGCAAACCTCTGG . 90.0 20.0 122.0 0.0 . 172 . . Atlas-SNP SHANK3 85358 hgsc.bcm.edu hg19 22 51143419 51143419 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SHANK3 NM_033517 exon16 c.G1882T p.G628X AAGGTCGGACACA . 72.0 5.0 117.0 0.0 . 96 . . Atlas-SNP KAL1 3730 hgsc.bcm.edu hg19 X 8565289 8565289 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KAL1 NM_000216 exon4 c.C327A p.F109L CTTGGGGAAGAGA . 94.0 4.0 156.0 0.0 . 78 . . Atlas-SNP MID1 4281 hgsc.bcm.edu hg19 X 10450648 10450648 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . MID1 NM_001193278 exon5 c.G1038T p.L346L CTGAGCCAGTTTG . 21.0 4.0 43.0 0.0 . 72 . . Atlas-SNP BMX 660 hgsc.bcm.edu hg19 X 15534284 15534284 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BMX NM_001721 exon5 c.C375T p.F125F GTTCTTCGTGGAC . 89.0 4.0 177.0 0.0 . 73 . . Atlas-SNP CA5B 11238 hgsc.bcm.edu hg19 X 15768181 15768181 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CA5B NM_007220 exon2 c.A35G p.Q12R TTCTTCAAGCCTC . 87.0 4.0 169.0 0.0 . 23 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32490308 32490308 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DMD NM_004006 exon22 c.C2922A p.I974I CTCCATGATTTCA . 156.0 45.0 216.0 0.0 . 2127 . . Atlas-SNP CXorf22 170063 hgsc.bcm.edu hg19 X 35989740 35989740 + Missense_Mutation SNP T T G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CXorf22 NM_152632 exon12 c.T2008G p.L670V ATAGGCTTAGAGC . 78.0 25.0 131.0 0.0 . 272 . . Atlas-SNP CYBB 1536 hgsc.bcm.edu hg19 X 37665717 37665717 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CYBB NM_000397 exon11 c.G1392T p.Q464H GAGCCAGATGCAG . 72.0 4.0 103.0 0.0 . 62 . . Atlas-SNP SRPX 8406 hgsc.bcm.edu hg19 X 38013812 38013812 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SRPX NM_006307 exon9 c.C1114A p.R372R TGTGTCGAAGATC . 81.0 4.0 79.0 0.0 . 53 . . Atlas-SNP BCOR 54880 hgsc.bcm.edu hg19 X 39934379 39934379 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BCOR NM_001123385 exon4 c.C220A p.R74S CAGTGCGGTCCAT . 91.0 6.0 98.0 0.0 . 351 . . Atlas-SNP CHST7 56548 hgsc.bcm.edu hg19 X 46433646 46433646 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CHST7 NM_019886 exon1 c.G280T p.G94W GCTGTCGGGGAGG . 62.0 5.0 100.0 0.0 . 23 . . Atlas-SNP GRIPAP1 56850 hgsc.bcm.edu hg19 X 48855662 48855662 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GRIPAP1 NM_020137 exon3 c.C159T p.S53S AGCTTTGCTGAAC . 137.0 6.0 175.0 0.0 . 128 . . Atlas-SNP CCDC22 28952 hgsc.bcm.edu hg19 X 49105132 49105132 + Silent SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . CCDC22 NM_014008 exon12 c.G1368T p.L456L AGAACTGCACCAG . 174.0 35.0 260.0 0.0 . 69 . . Atlas-SNP FOXR2 139628 hgsc.bcm.edu hg19 X 55650629 55650629 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FOXR2 NM_198451 exon1 c.C485A p.P162Q AGGAACCAGACGA . 86.0 5.0 154.0 0.0 . 42 . . Atlas-SNP FAM155B 27112 hgsc.bcm.edu hg19 X 68725240 68725240 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . FAM155B NM_015686 exon1 c.C115A p.R39R TCCGAGCGGGCGC . 55.0 4.0 54.0 0.0 . 44 . . Atlas-SNP ARR3 407 hgsc.bcm.edu hg19 X 69496000 69496000 + Nonsense_Mutation SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ARR3 NM_004312 exon6 c.C214T p.R72X ACGTTCCGAAAAG . 99.0 4.0 166.0 0.0 . 41 . . Atlas-SNP SNX12 29934 hgsc.bcm.edu hg19 X 70282707 70282707 + Silent SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SNX12 NM_001256185 exon3 c.C258T p.S86S TACCTTGCTATCT . 87.0 19.0 128.0 0.0 . 18 . . Atlas-SNP PHKA1 5255 hgsc.bcm.edu hg19 X 71915637 71915637 + Silent SNP C C T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PHKA1 NM_001172436 exon4 c.G375A p.V125V ATCACCCACTACA . 886.0 223.0 1274.0 1.0 . 129 . . Atlas-SNP KIAA2022 340533 hgsc.bcm.edu hg19 X 73960460 73960460 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . KIAA2022 NM_001008537 exon3 c.G3932T p.R1311L AATTCCCGTTGGT . 77.0 5.0 127.0 0.0 . 262 . . Atlas-SNP DRP2 1821 hgsc.bcm.edu hg19 X 100513518 100513518 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . DRP2 NM_001939 exon22 c.A2611G p.R871G CGTCTGAGGGAGC . 97.0 4.0 92.0 0.0 . 98 . . Atlas-SNP BHLHB9 80823 hgsc.bcm.edu hg19 X 102004395 102004395 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BHLHB9 NM_001142530 exon2 c.G472T p.D158Y GGGGCCGATTGCA . 110.0 5.0 145.0 0.0 . 60 . . Atlas-SNP IRS4 8471 hgsc.bcm.edu hg19 X 107979422 107979422 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . IRS4 NM_003604 exon1 c.G153T p.P51P GGCTCCCGGACAA . 121.0 6.0 173.0 0.0 . 253 . . Atlas-SNP ALG13 79868 hgsc.bcm.edu hg19 X 110980011 110980011 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ALG13 NM_001099922 exon23 c.G2599T p.G867C TCTAACGGTGCAG . 166.0 7.0 262.0 0.0 . 230 . . Atlas-SNP GLUD2 2747 hgsc.bcm.edu hg19 X 120181981 120181981 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . GLUD2 NM_012084 exon1 c.G443A p.G148E GCAAGGGAGGTAT . 147.0 38.0 246.0 0.0 . 89 . . Atlas-SNP ZIC3 7547 hgsc.bcm.edu hg19 X 136649847 136649847 + Missense_Mutation SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZIC3 NM_003413 exon1 c.C997A p.P333T CCCTTCCCGGGCT . 125.0 5.0 199.0 0.0 . 93 . . Atlas-SNP SLITRK2 84631 hgsc.bcm.edu hg19 X 144905572 144905572 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SLITRK2 NM_001144005 exon5 c.G1629T p.W543C AGACTGGACAGAA . 97.0 4.0 163.0 0.0 . 221 . . Atlas-SNP AFF2 2334 hgsc.bcm.edu hg19 X 148037651 148037651 + Silent SNP C C A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . AFF2 NM_002025 exon11 c.C2076A p.P692P GGCTCCCGAGAAG . 85.0 4.0 100.0 0.0 . 679 . . Atlas-SNP ZNF185 7739 hgsc.bcm.edu hg19 X 152128427 152128427 + Missense_Mutation SNP A A G novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . ZNF185 NM_001178106 exon18 c.A1687G p.S563G CGAGAGAGCTGCA . 53.0 4.0 73.0 0.0 . 92 . . Atlas-SNP PLXNB3 5365 hgsc.bcm.edu hg19 X 153032892 153032892 + Missense_Mutation SNP G G T novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . PLXNB3 NM_001163257 exon4 c.G679T p.A227S CCCCTGGCCATCC . 66.0 10.0 50.0 0.0 . 208 . . Atlas-SNP ND3 0 hgsc.bcm.edu hg19 MT 10197 10197 + Missense_Mutation SNP G G A novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . ENST00000361227 exon1 c.G139A p.A47T TCCCCCGCCCGCG . 11.0 11.0 10.0 0.0 . . . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111985087 111985089 + In_Frame_Del DEL AAG AAG - novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 AAG AAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . . NM_183061 exon8 c.875_877del p.292_293del . . 423.0 87.0 420.0 0.0 . . . . Pindel WDR7 23335 hgsc.bcm.edu hg19 18 54349915 54349915 + Frame_Shift_Del DEL C C - novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . WDR7 NM_052834 exon5 c.350delA p.Y117fs . . 169.0 31.0 227.0 0.0 . 166 . . Pindel BACE1 23621 hgsc.bcm.edu hg19 11 117161738 117161739 + Frame_Shift_Ins INS - - C novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . BACE1 NM_012104 exon7 c.970_971insG p.L324fs . . 72.0 17.0 145.0 0.0 . 33 . . Pindel NCOA3 8202 hgsc.bcm.edu hg19 20 46265318 46265320 + In_Frame_Del DEL AAG AAG - novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 AAG AAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . NCOA3 NM_001174088 exon12 c.2217_2219del p.739_740del . . 207.0 23.0 200.0 0.0 . 156 . . Pindel SETD8 387893 hgsc.bcm.edu hg19 12 123880916 123880924 + In_Frame_Del DEL TCGCAAACT TCGCAAACT - novel TCGA-EP-A2KA-01A-11D-A183-10 TCGA-EP-A2KA-10A-01D-A183-10 TCGCAAACT TCGCAAACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 484a41c8-fcaf-488d-97dc-bfe6a4b88a95 a9d75099-91a1-40aa-a8f1-e6035acd821d . SETD8 NM_020382 exon5 c.533_541del p.178_181del . . 63.0 17.0 102.0 0.0 . 35 . . Pindel