Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TAS1R3 83756 hgsc.bcm.edu hg19 1 1266874 1266874 + Missense_Mutation SNP G G A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . TAS1R3 NM_152228 exon1 c.G149A p.G50D AGGCTGGCCTCCG . 40.0 6.0 31.0 0.0 . 39 . . Atlas-SNP UBR4 23352 hgsc.bcm.edu hg19 1 19408022 19408022 + Silent SNP C C A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 UBR4,colon,carcinoma,0,1 UBR4 NM_020765 exon103 c.G15054T p.L5018L CTGTTCCAGAAAG . 91.0 24.0 56.0 1.0 . 415 . . Atlas-SNP FAF1 11124 hgsc.bcm.edu hg19 1 51323604 51323604 + Missense_Mutation SNP T T A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . FAF1 NM_007051 exon2 c.A111T p.L37F TACCACTAAGTCC . 260.0 42.0 223.0 0.0 . 64 . . Atlas-SNP PDE4B 5142 hgsc.bcm.edu hg19 1 66713174 66713174 + Missense_Mutation SNP C C G novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . PDE4B NM_001037341 exon4 c.C313G p.R105G CCAGGTCGGAGTC . 91.0 26.0 99.0 0.0 . 231 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152281994 152281994 + Missense_Mutation SNP G G T rs200622741 bycluster;alternate_allele TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . FLG NM_002016 exon3 c.C5368A p.Q1790K ATCTTTGTCTTCC . 122.0 31.0 125.0 0.0 . 900 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 185902929 185902929 + Missense_Mutation SNP G G A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . HMCN1 NM_031935 exon11 c.G1801A p.A601T TCATCAGCCGCTT . 68.0 10.0 55.0 0.0 . 797 . . Atlas-SNP KIF14 9928 hgsc.bcm.edu hg19 1 200562884 200562884 + Missense_Mutation SNP A A C novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . KIF14 NM_014875 exon15 c.T2563G p.F855V CACCAAAATTTTT . 79.0 14.0 73.0 0.0 . 156 . . Atlas-SNP IGFN1 91156 hgsc.bcm.edu hg19 1 201196308 201196308 + Silent SNP A A T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . IGFN1 NM_001164586 exon23 c.A11085T p.A3695A CCAGGCAGTCAGC . 45.0 17.0 29.0 0.0 . 220 . . Atlas-SNP CENPO 79172 hgsc.bcm.edu hg19 2 25016357 25016357 + Silent SNP C C T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . CENPO NM_001199803 exon1 c.C15T p.L5L AATTCTCGCTTCT . 94.0 24.0 63.0 0.0 . 18 . . Atlas-SNP HEATR5B 54497 hgsc.bcm.edu hg19 2 37295937 37295937 + Missense_Mutation SNP C C T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . HEATR5B NM_019024 exon8 c.G1064A p.R355Q ACACATCGTCTGG . 65.0 13.0 53.0 0.0 . 185 . . Atlas-SNP NAGK 55577 hgsc.bcm.edu hg19 2 71304745 71304745 + Missense_Mutation SNP A A T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . NAGK NM_017567 exon9 c.A961T p.S321C TGGAAGAGCTGGG . 61.0 10.0 47.0 0.0 . 34 . . Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197081786 197081786 + Missense_Mutation SNP C C A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . HECW2 NM_020760 exon27 c.G4440T p.W1480C CCAGAACCACCGA . 93.0 18.0 88.0 0.0 . 239 . . Atlas-SNP PLXNB1 5364 hgsc.bcm.edu hg19 3 48451118 48451118 + Missense_Mutation SNP C C A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . PLXNB1 NM_001130082 exon33 c.G5800T p.D1934Y GGTCATCCACGAA . 93.0 10.0 74.0 0.0 . 150 . . Atlas-SNP KIAA1524 57650 hgsc.bcm.edu hg19 3 108281998 108281998 + Missense_Mutation SNP G G C novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 KIAA1524,NS,carcinoma,0,1 KIAA1524 NM_020890 exon13 c.C1609G p.P537A GCAGTGGAGCAGC . 200.0 34.0 174.0 1.0 . 82 . . Atlas-SNP ZIC4 84107 hgsc.bcm.edu hg19 3 147113833 147113833 + Missense_Mutation SNP C C G novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . ZIC4 NM_001168378 exon3 c.G644C p.G215A TCCGGGCCGCCGA . 61.0 8.0 65.0 0.0 . 174 . . Atlas-SNP HTR3C 170572 hgsc.bcm.edu hg19 3 183772621 183772621 + Nonsense_Mutation SNP C C A rs180785188 bycluster;by1000genomes;alternate_allele TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . HTR3C NM_130770 exon2 c.C180A p.Y60X CAACTACAGCATC . 81.0 16.0 56.0 0.0 . 65 . C|0.999;T|0.001 Atlas-SNP KIAA1211 57482 hgsc.bcm.edu hg19 4 57180856 57180856 + Silent SNP G G A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . KIAA1211 NM_020722 exon8 c.G1188A p.A396A GGGCGCGGAGGAG . 41.0 15.0 26.0 0.0 . 178 . . Atlas-SNP TKTL2 84076 hgsc.bcm.edu hg19 4 164393739 164393739 + Missense_Mutation SNP C C A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . TKTL2 NM_032136 exon1 c.G1148T p.R383L CGACCACGTGTAG . 61.0 11.0 72.0 0.0 . 130 . . Atlas-SNP WDR17 116966 hgsc.bcm.edu hg19 4 177041041 177041041 + Missense_Mutation SNP T T C novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . WDR17 NM_170710 exon5 c.T403C p.C135R AGTTGGTGCTGGA . 179.0 20.0 181.0 0.0 . 198 . . Atlas-SNP CWC27 10283 hgsc.bcm.edu hg19 5 64079679 64079679 + Missense_Mutation SNP G G T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 CWC27,colon,carcinoma,0,1 CWC27 NM_005869 exon4 c.G269T p.R90L ATTCACGGTTGCG . 77.0 18.0 69.0 0.0 . 47 . . Atlas-SNP VCAN 1462 hgsc.bcm.edu hg19 5 82836639 82836639 + Missense_Mutation SNP A A G novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . VCAN NM_004385 exon8 c.A7817G p.H2606R AACCACATGACAG . 74.0 21.0 74.0 0.0 . 498 . . Atlas-SNP SLCO4C1 353189 hgsc.bcm.edu hg19 5 101592902 101592902 + Silent SNP T T C novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . SLCO4C1 NM_180991 exon8 c.A1386G p.G462G TGCAACTCCAGAT . 353.0 73.0 272.0 0.0 . 113 . . Atlas-SNP ABCC10 89845 hgsc.bcm.edu hg19 6 43401071 43401071 + Missense_Mutation SNP G G A rs367899886 TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . ABCC10 NM_001198934 exon3 c.G1353A p.M451I GGAAATGCTACAG . 63.0 8.0 49.0 0.0 . 118 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75887438 75887438 + Missense_Mutation SNP A A G novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . COL12A1 NM_004370 exon12 c.T2378C p.I793T TCAGGAATTACAG . 139.0 25.0 140.0 0.0 . 385 . . Atlas-SNP LCA5 167691 hgsc.bcm.edu hg19 6 80197406 80197406 + Missense_Mutation SNP T T C novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . LCA5 NM_001122769 exon8 c.A1409G p.K470R TTCAGTTTAGCAA . 231.0 49.0 242.0 0.0 . 71 . . Atlas-SNP MYB 4602 hgsc.bcm.edu hg19 6 135515497 135515497 + Missense_Mutation SNP C C A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . MYB NM_001161656 exon8 c.C847A p.H283N CAGAGACACTATA . 62.0 9.0 61.0 0.0 . 137 . . Atlas-SNP KIAA1549 57670 hgsc.bcm.edu hg19 7 138603314 138603314 + Missense_Mutation SNP G G A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . KIAA1549 NM_020910 exon2 c.C1058T p.A353V CTGAATGCAAGGG . 55.0 9.0 32.0 0.0 . 314 . . Atlas-SNP PLAG1 5324 hgsc.bcm.edu hg19 8 57080762 57080762 + Missense_Mutation SNP G G A rs144724863 TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 PLAG1_ENST00000316981,colon,carcinoma,+1,1 PLAG1 NM_001114634 exon3 c.C67T p.R23C GCTTACGTTTCCC . 98.0 8.0 110.0 0.0 . 123 . G|1.000;A|0.000 Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 68864764 68864764 + Silent SNP G G T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . PREX2 NM_025170 exon1 c.G135T p.L45L GTTCCTGGTGTCG . 113.0 14.0 101.0 0.0 . 614 . . Atlas-SNP ANGPT1 284 hgsc.bcm.edu hg19 8 108348431 108348431 + Missense_Mutation SNP C C G novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . ANGPT1 NM_001199859 exon3 c.G522C p.E174D TTGCTTCTCTAGC . 157.0 32.0 133.0 0.0 . 111 . . Atlas-SNP DOCK8 81704 hgsc.bcm.edu hg19 9 371468 371468 + Missense_Mutation SNP G G T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . DOCK8 NM_203447 exon17 c.G1909T p.A637S CTCCCCGCTAAGC . 117.0 20.0 109.0 0.0 . 401 . . Atlas-SNP DDX58 23586 hgsc.bcm.edu hg19 9 32489378 32489378 + Missense_Mutation SNP T T C novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . DDX58 NM_014314 exon6 c.A763G p.M255V CTTTCATAGCAGG . 190.0 25.0 130.0 0.0 . 82 . . Atlas-SNP S1PR3 1903 hgsc.bcm.edu hg19 9 91616133 91616133 + Silent SNP G G A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . S1PR3 NM_005226 exon2 c.G18A p.P6P CCTCCCGCCGCGT . 48.0 10.0 43.0 0.0 . 49 . . Atlas-SNP CDH23 64072 hgsc.bcm.edu hg19 10 73330627 73330627 + Silent SNP C C A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . CDH23 NM_052836 exon8 c.C705A p.I235I CCCCATCTTCATC . 83.0 13.0 105.0 0.0 . 365 . . Atlas-SNP AP2A2 161 hgsc.bcm.edu hg19 11 985500 985500 + Missense_Mutation SNP C C T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . AP2A2 NM_001242837 exon8 c.C883T p.P295S GAACCGCCCAAGT . 46.0 8.0 27.0 0.0 . 50 . . Atlas-SNP SPTBN2 6712 hgsc.bcm.edu hg19 11 66460755 66460755 + Missense_Mutation SNP C C A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . SPTBN2 NM_006946 exon23 c.G4756T p.D1586Y GGGCATCCTCCAG . 41.0 15.0 52.0 0.0 . 188 . . Atlas-SNP KLHL35 283212 hgsc.bcm.edu hg19 11 75134789 75134789 + Missense_Mutation SNP A A T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . KLHL35 NM_001039548 exon5 c.T1510A p.Y504N GATCATAGGTGAA . 32.0 9.0 35.0 0.0 . 15 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103006470 103006470 + Missense_Mutation SNP G G C novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . DYNC2H1 NM_001377 exon17 c.G2367C p.R789S ATTCAGGCCCCCT . 140.0 32.0 144.0 0.0 . 246 . . Atlas-SNP PDE3A 5139 hgsc.bcm.edu hg19 12 20769305 20769305 + Missense_Mutation SNP G G A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . PDE3A NM_000921 exon4 c.G1411A p.A471T CAGGAAGCACCTT . 40.0 9.0 47.0 0.0 . 184 . . Atlas-SNP CUX2 23316 hgsc.bcm.edu hg19 12 111655734 111655734 + Missense_Mutation SNP A A T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . CUX2 NM_015267 exon3 c.A215T p.Q72L GCTTCCAAGCCGA . 53.0 11.0 36.0 0.0 . 145 . . Atlas-SNP CLIP1 6249 hgsc.bcm.edu hg19 12 122845703 122845703 + Missense_Mutation SNP C C T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . CLIP1 NM_002956 exon5 c.G808A p.G270S ACAAGCCATATTT . 62.0 15.0 50.0 0.0 . 126 . . Atlas-SNP C14orf37 145407 hgsc.bcm.edu hg19 14 58478850 58478850 + Missense_Mutation SNP T T C novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . C14orf37 NM_001001872 exon6 c.A2108G p.K703R TTTAATTTTTCCA . 573.0 89.0 446.0 0.0 . 87 . . Atlas-SNP KCNH5 27133 hgsc.bcm.edu hg19 14 63468076 63468076 + Missense_Mutation SNP G G T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . KCNH5 NM_172375 exon4 c.C406A p.Q136K TTGGCTGTTTGAA . 94.0 16.0 68.0 0.0 . 320 . . Atlas-SNP AHSA1 10598 hgsc.bcm.edu hg19 14 77931884 77931884 + Silent SNP T T G novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . AHSA1 NM_012111 exon6 c.T564G p.A188A ACAGGCTAAGCCT . 36.0 7.0 31.0 0.0 . 24 . . Atlas-SNP ALDH1A2 8854 hgsc.bcm.edu hg19 15 58254254 58254254 + Missense_Mutation SNP C C A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . ALDH1A2 NM_003888 exon10 c.G1207T p.V403L AAAACACTGTGGG . 158.0 25.0 148.0 0.0 . 69 . . Atlas-SNP PEAK1 0 hgsc.bcm.edu hg19 15 77407661 77407661 + Missense_Mutation SNP T T A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . . NM_024776 exon8 c.A4078T p.I1360F TACAGATCTGAAA . 47.0 8.0 41.0 0.0 . . . . Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24831569 24831569 + Silent SNP G G A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . TNRC6A NM_014494 exon22 c.G5190A p.P1730P TGCTCCGTCCCGC . 121.0 28.0 100.0 0.0 . 171 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577511 7577511 + Missense_Mutation SNP A A G rs28934577 bycluster;alternate_allele TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 TP53_ENST00000413465,colon,carcinoma,+1,27 TP53 NM_000546 exon7 c.T770C p.L257P TCTTCCAGTGTGA . 64.0 17.0 80.0 0.0 . 33396 . . Atlas-SNP EMR3 84658 hgsc.bcm.edu hg19 19 14748990 14748990 + Missense_Mutation SNP C C T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . EMR3 NM_032571 exon11 c.G1411A p.G471S CATAGCCGACTGG . 88.0 18.0 52.0 0.0 . 99 . . Atlas-SNP ENTPD6 955 hgsc.bcm.edu hg19 20 25203506 25203506 + Missense_Mutation SNP G G T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . ENTPD6 NM_001247 exon12 c.G1078T p.V360L GCCAGAGTGTCAG . 55.0 12.0 39.0 0.0 . 57 . . Atlas-SNP CTNNBL1 56259 hgsc.bcm.edu hg19 20 36470822 36470822 + Splice_Site SNP G G A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . CTNNBL1 NM_030877 exon13 c.1392+1G>A . AAACACGTATGTA . 89.0 17.0 78.0 0.0 . 78 . . Atlas-SNP EWSR1 2130 hgsc.bcm.edu hg19 22 29695604 29695604 + Missense_Mutation SNP G G T novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . EWSR1 NM_013986 exon17 c.G1709T p.R570I GTGGCAGAGGTGG . 116.0 21.0 107.0 0.0 . 104 . . Atlas-SNP RAI2 10742 hgsc.bcm.edu hg19 X 17819379 17819379 + Missense_Mutation SNP G G A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . RAI2 NM_001172739 exon3 c.C752T p.P251L GGCATCGGGATGG . 63.0 19.0 53.0 0.0 . 66 . . Atlas-SNP PTCHD1 139411 hgsc.bcm.edu hg19 X 23398175 23398175 + Silent SNP C C A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . PTCHD1 NM_173495 exon2 c.C819A p.V273V CCTGGTCACCAGC . 59.0 21.0 48.0 0.0 . 213 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135441570 135441570 + Missense_Mutation SNP T T C novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . GPR112 NM_153834 exon11 c.T7100C p.L2367S ATCAATTGACGTT . 167.0 63.0 111.0 0.0 . 459 . . Atlas-SNP SMIM5 643008 hgsc.bcm.edu hg19 17 73636388 73636389 + Frame_Shift_Ins INS - - A novel TCGA-ED-A7XO-01A-11D-A34Z-10 TCGA-ED-A7XO-10A-01D-A34Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80 a83a44f3-45ec-4725-bef7-e1656fef6932 . . NM_001162995 exon2 c.107_108insA p.S36fs . . 76.0 10.0 78.0 0.0 . . . . Atlas-INDEL