Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MIB2 142678 hgsc.bcm.edu hg19 1 1561031 1561031 + Nonsense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MIB2 NM_080875 exon8 c.A1315T p.K439X CTCACCAAGGTGC . 76.0 41.0 71.0 0.0 . 62 . . Atlas-SNP USP48 84196 hgsc.bcm.edu hg19 1 22083087 22083087 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . USP48 NM_001032730 exon3 c.A364T p.S122C AAGTGCTTGGACA . 314.0 153.0 299.0 0.0 . 91 . . Atlas-SNP C1orf63 57035 hgsc.bcm.edu hg19 1 25571745 25571745 + Silent SNP G G A rs147790749 TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . C1orf63 NM_020317 exon3 c.C568T p.L190L TTCCTAGAGCTTT . 65.0 20.0 75.0 0.0 . 17 . G|1.000;A|0.000 Atlas-SNP TMEM57 55219 hgsc.bcm.edu hg19 1 25810611 25810611 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TMEM57 NM_018202 exon7 c.G1159A p.E387K AGGCTGGAACAAG . 267.0 110.0 265.0 1.0 . 72 . . Atlas-SNP SLC30A2 7780 hgsc.bcm.edu hg19 1 26365755 26365755 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SLC30A2 NM_001004434 exon8 c.A1015T p.S339C GGCGGCTGCTGGC . 78.0 41.0 74.0 0.0 . 29 . . Atlas-SNP COL16A1 1307 hgsc.bcm.edu hg19 1 32157244 32157244 + Splice_Site SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . COL16A1 NM_001856 exon19 c.1258-1G>T . CCGGCCCTGTGGG . 193.0 87.0 227.0 1.0 . 137 . . Atlas-SNP OSCP1 127700 hgsc.bcm.edu hg19 1 36904373 36904373 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OSCP1 NM_145047 exon2 c.A251T p.Q84L CTGGCCTGGTTCA . 40.0 12.0 39.0 0.0 . 48 . . Atlas-SNP EPHA10 284656 hgsc.bcm.edu hg19 1 38230698 38230698 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . EPHA10 NM_001099439 exon1 c.T41A p.L14H CGGCAGAGGAAGA . 40.0 24.0 47.0 0.0 . 120 . . Atlas-SNP YBX1 4904 hgsc.bcm.edu hg19 1 43162928 43162928 + Silent SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . YBX1 NM_004559 exon6 c.C735T p.F245F ACGATTCCGCAGG . 179.0 57.0 220.0 0.0 . 49 . . Atlas-SNP FAM73A 374986 hgsc.bcm.edu hg19 1 78325806 78325806 + Nonsense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . FAM73A NM_198549 exon11 c.C1270T p.R424X AAAGCACGAAAGG . 99.0 35.0 120.0 0.0 . 56 . . Atlas-SNP MCOLN2 255231 hgsc.bcm.edu hg19 1 85403666 85403666 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MCOLN2 NM_153259 exon10 c.A1210T p.N404Y TTACATTATATGC . 369.0 152.0 377.0 0.0 . 60 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94548999 94548999 + Splice_Site SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ABCA4 NM_000350 exon8 c.769-2A>T . GGAAGCTGTAATT . 55.0 6.0 35.0 0.0 . 275 . . Atlas-SNP LPPR5 0 hgsc.bcm.edu hg19 1 99418684 99418684 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . . NM_001010861 exon3 c.G563T p.R188L GTTTTTCGGGCTC . 90.0 40.0 90.0 0.0 . . . . Atlas-SNP OLFM3 118427 hgsc.bcm.edu hg19 1 102270187 102270187 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OLFM3 NM_058170 exon6 c.C984A p.D328E CATTAGGTCGATG . 178.0 89.0 133.0 0.0 . 178 . . Atlas-SNP NOTCH2 4853 hgsc.bcm.edu hg19 1 120462971 120462971 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . NOTCH2 NM_024408 exon30 c.G5360A p.R1787Q CATGGCCGTCGAT . 114.0 7.0 130.0 0.0 . 348 . . Atlas-SNP GJA5 2702 hgsc.bcm.edu hg19 1 147230478 147230478 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GJA5 NM_005266 exon2 c.A869G p.Q290R TTTTGTTGGGAGG . 192.0 27.0 110.0 0.0 . 64 . . Atlas-SNP VPS45 11311 hgsc.bcm.edu hg19 1 150054960 150054960 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . VPS45 NM_007259 exon10 c.C1097T p.A366V CTAGTGCTCTCCA . 178.0 121.0 115.0 0.0 . 47 . . Atlas-SNP DENND4B 9909 hgsc.bcm.edu hg19 1 153907303 153907303 + Silent SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 DENND4B_ENST00000361217,bladder,carcinoma,0,2 DENND4B NM_014856 exon18 c.G2706A p.Q902Q CTGCTGCTGTTGC . 69.0 5.0 40.0 0.0 . 210 . . Atlas-SNP CRTC2 200186 hgsc.bcm.edu hg19 1 153924016 153924016 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 CRTC2,extremity,malignant_melanoma,0,1 CRTC2 NM_181715 exon11 c.C1124A p.S375Y AAGGAGGAGGCAG . 55.0 37.0 27.0 0.0 . 58 . . Atlas-SNP UBE2Q1 55585 hgsc.bcm.edu hg19 1 154527989 154527989 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . UBE2Q1 NM_017582 exon3 c.G452A p.R151K ATGATCCTCTTCA . 99.0 21.0 70.0 0.0 . 35 . . Atlas-SNP DCST1 149095 hgsc.bcm.edu hg19 1 155023119 155023119 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DCST1 NM_152494 exon17 c.C1896A p.H632Q CCTGCACCGCGGC . 27.0 10.0 19.0 0.0 . 69 . . Atlas-SNP AIM2 9447 hgsc.bcm.edu hg19 1 159043068 159043068 + Silent SNP A A G rs145394745 TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . AIM2 NM_004833 exon2 c.T222C p.Y74Y AAGCATATAATTC . 228.0 82.0 168.0 0.0 . 70 . A|1.000;G|0.000 Atlas-SNP NCSTN 23385 hgsc.bcm.edu hg19 1 160323960 160323960 + Missense_Mutation SNP T T G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . NCSTN NM_015331 exon11 c.T1232G p.V411G CTGCTGTCATCCT . 145.0 39.0 131.0 0.0 . 64 . . Atlas-SNP ATF6 22926 hgsc.bcm.edu hg19 1 161832997 161832997 + Silent SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ATF6 NM_007348 exon14 c.A1614T p.S538S GAACTCAGGGAGT . 225.0 65.0 172.0 0.0 . 84 . . Atlas-SNP ASTN1 460 hgsc.bcm.edu hg19 1 176915125 176915125 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ASTN1 NM_004319 exon13 c.T2186C p.F729S CCAAAGAACATCT . 144.0 39.0 116.0 0.0 . 314 . . Atlas-SNP RGS16 6004 hgsc.bcm.edu hg19 1 182569551 182569551 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RGS16 NM_002928 exon5 c.T485A p.L162Q TCCATCAGGGTAC . 73.0 21.0 75.0 0.0 . 25 . . Atlas-SNP KCNK2 3776 hgsc.bcm.edu hg19 1 215345508 215345508 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KCNK2 NM_001017425 exon5 c.T805A p.F269I ATTGGATTTGGTG . 158.0 22.0 107.0 0.0 . 135 . . Atlas-SNP C1orf35 79169 hgsc.bcm.edu hg19 1 228290668 228290668 + Silent SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . C1orf35 NM_024319 exon2 c.G177T p.A59A CGGGCCCGCGCAT . 27.0 18.0 14.0 0.0 . 17 . . Atlas-SNP DISC1 27185 hgsc.bcm.edu hg19 1 232144628 232144628 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DISC1 NM_001164537 exon12 c.C2236A p.L746M GGAAGCCTGTCTG . 145.0 22.0 102.0 0.0 . 207 . . Atlas-SNP MTR 4548 hgsc.bcm.edu hg19 1 237025590 237025590 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MTR NM_000254 exon21 c.A2251T p.M751L CCTTTCATGGAAA . 98.0 25.0 87.0 0.0 . 127 . . Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245851297 245851297 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KIF26B NM_018012 exon12 c.G5012T p.R1671M TGGGCAGGGCGAC . 73.0 38.0 64.0 0.0 . 343 . . Atlas-SNP AHCTF1 25909 hgsc.bcm.edu hg19 1 247013752 247013752 + Silent SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . AHCTF1 NM_015446 exon33 c.A5583T p.P1861P AACTGCTGGTTCC . 317.0 175.0 214.0 0.0 . 187 . . Atlas-SNP OR2L3 391192 hgsc.bcm.edu hg19 1 248224411 248224411 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OR2L3 NM_001004687 exon1 c.T428C p.M143T TGCTGATGATAAC . 117.0 29.0 67.0 0.0 . 97 . . Atlas-SNP SNTG2 54221 hgsc.bcm.edu hg19 2 1094065 1094065 + Silent SNP C C T rs369324271 TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SNTG2 NM_018968 exon4 c.C294T p.V98V CCCTGTCGTCATA . 156.0 36.0 180.0 0.0 . 125 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1926446 1926446 + Silent SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MYT1L NM_015025 exon10 c.G1095A p.E365E GAAGTCCTCTTCT . 69.0 17.0 96.0 0.0 . 241 . . Atlas-SNP SMC6 79677 hgsc.bcm.edu hg19 2 17896176 17896176 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SMC6 NM_001142286 exon16 c.C1682T p.P561L ATTATCGGTGGCC . 106.0 9.0 100.0 0.0 . 102 . . Atlas-SNP SLC30A3 7781 hgsc.bcm.edu hg19 2 27480785 27480785 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SLC30A3 NM_003459 exon4 c.G566T p.C189F TTGGCACAGACTG . 127.0 33.0 137.0 0.0 . 39 . . Atlas-SNP SPAST 6683 hgsc.bcm.edu hg19 2 32341205 32341205 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SPAST NM_014946 exon7 c.T1022A p.F341Y TTAAATTTGATGA . 80.0 29.0 95.0 0.0 . 61 . . Atlas-SNP STON1-GTF2A1L 286749 hgsc.bcm.edu hg19 2 48848041 48848041 + Missense_Mutation SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . STON1-GTF2A1L NM_001198594 exon3 c.C2185G p.L729V CGGAATCTATTTG . 52.0 22.0 85.0 0.0 . 180 . . Atlas-SNP CNRIP1 25927 hgsc.bcm.edu hg19 2 68544310 68544310 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CNRIP1 NM_001111101 exon2 c.A309T p.Q103H GATGGGTTGCCGT . 111.0 66.0 188.0 0.0 . 45 . . Atlas-SNP ZC3H6 376940 hgsc.bcm.edu hg19 2 113067546 113067546 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZC3H6 NM_198581 exon4 c.A421T p.S141C GAGTACAGCACCT . 252.0 83.0 278.0 0.0 . 93 . . Atlas-SNP CSRNP3 80034 hgsc.bcm.edu hg19 2 166535809 166535809 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CSRNP3 NM_001172173 exon7 c.T1304A p.L435Q CAACTCTGTATTA . 56.0 32.0 103.0 0.0 . 73 . . Atlas-SNP SLC25A12 8604 hgsc.bcm.edu hg19 2 172666177 172666177 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SLC25A12 NM_003705 exon13 c.A1244T p.D415V AATTTGTCCCGAA . 165.0 33.0 213.0 0.0 . 59 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179407911 179407911 + Silent SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TTN NM_001267550 exon347 c.T96789A p.T32263T AGTAACAGTGTGC . 73.0 41.0 76.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179594820 179594820 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TTN NM_001267550 exon62 c.G18307A p.E6103K CCAGACCTTTTAC . 34.0 12.0 50.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179611653 179611653 + Silent SNP A A C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TTN NM_133379 exon46 c.T15474G p.A5158A TTCATAAGCTGAA . 78.0 26.0 80.0 0.0 . 18412 . . Atlas-SNP CCDC141 285025 hgsc.bcm.edu hg19 2 179825979 179825979 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CCDC141 NM_173648 exon5 c.A758T p.Q253L TCCCACTGACATA . 100.0 60.0 122.0 0.0 . 362 . . Atlas-SNP COL3A1 1281 hgsc.bcm.edu hg19 2 189861938 189861938 + Silent SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . COL3A1 NM_000090 exon25 c.C1809A p.G603G ACCTGGCCCTCAG . 84.0 39.0 121.0 0.0 . 292 . . Atlas-SNP BMPR2 659 hgsc.bcm.edu hg19 2 203379609 203379609 + Splice_Site SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . BMPR2 NM_001204 exon5 c.530-2A>T . TCTTATAGGAGAC . 60.0 19.0 59.0 0.0 . 142 . . Atlas-SNP ADAM23 8745 hgsc.bcm.edu hg19 2 207429764 207429764 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ADAM23 NM_003812 exon14 c.T1366A p.W456R GAATCCTGGGGTG . 49.0 23.0 73.0 0.0 . 239 . . Atlas-SNP STK36 27148 hgsc.bcm.edu hg19 2 219553490 219553490 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . STK36 NM_015690 exon12 c.C1451T p.S484F TTCTCTCCAGCTG . 126.0 40.0 134.0 0.0 . 111 . . Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220341676 220341676 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SPEG NM_005876 exon19 c.A4532T p.K1511I AGGGAAAACCACT . 38.0 10.0 70.0 0.0 . 272 . . Atlas-SNP INHA 3623 hgsc.bcm.edu hg19 2 220439764 220439764 + Nonsense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . INHA NM_002191 exon2 c.C617A p.S206X CCTGCTCAGCCCG . 38.0 14.0 66.0 0.0 . 30 . . Atlas-SNP DOCK10 55619 hgsc.bcm.edu hg19 2 225702538 225702538 + Missense_Mutation SNP C C G rs369073678 alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DOCK10 NM_014689 exon25 c.G2791C p.D931H CAATGTCGGTCAG . 58.0 22.0 57.0 0.0 . 308 . . Atlas-SNP B3GNT7 93010 hgsc.bcm.edu hg19 2 232263636 232263636 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . B3GNT7 NM_145236 exon2 c.A1206T p.X402C GCTCTGACCCCAG . 8.0 6.0 11.0 0.0 . 38 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266098 41266098 + Missense_Mutation SNP A A G rs121913396 bycluster TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 CTNNB1,gallbladder,other,+1,128 CTNNB1 NM_001098209 exon3 c.A95G p.D32G ACCTGGACTCTGG . 114.0 106.0 182.0 0.0 . 4904 . . Atlas-SNP CACNA2D2 9254 hgsc.bcm.edu hg19 3 50418547 50418547 + Silent SNP G G A rs56287038 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CACNA2D2 NM_001174051 exon7 c.C663T p.I221I ATTGAGGATGACA . 56.0 18.0 81.0 0.0 . 82 . G|0.887;T|0.113 Atlas-SNP OR5H14 403273 hgsc.bcm.edu hg19 3 97868527 97868527 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 OR5H14,NS,carcinoma,0,1 OR5H14 NM_001005514 exon1 c.C298A p.Q100K AAGATACAGTTGT . 182.0 26.0 165.0 0.0 . 56 . . Atlas-SNP MORC1 27136 hgsc.bcm.edu hg19 3 108698446 108698446 + Missense_Mutation SNP C C A rs201675482 by1000genomes;alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MORC1 NM_014429 exon24 c.G2393T p.G798V CAACTGCCACTCA . 102.0 24.0 124.0 0.0 . 211 . C|1.000;T|0.000 Atlas-SNP CD96 10225 hgsc.bcm.edu hg19 3 111342600 111342600 + Splice_Site SNP G G T rs77738677 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CD96 NM_005816 exon9 c.1181-1G>T . AAAATAGGATATC . 304.0 108.0 284.0 0.0 . 75 . G|0.995;A|0.005 Atlas-SNP KALRN 8997 hgsc.bcm.edu hg19 3 124437851 124437851 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KALRN NM_001024660 exon60 c.C8495T p.S2832L AGATCTCGGGTCA . 116.0 18.0 102.0 0.0 . 556 . . Atlas-SNP KALRN 8997 hgsc.bcm.edu hg19 3 124437876 124437876 + Silent SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KALRN NM_001024660 exon60 c.G8520A p.L2840L CCACCTGCTGGGG . 119.0 20.0 97.0 0.0 . 556 . . Atlas-SNP SLC12A8 84561 hgsc.bcm.edu hg19 3 124909320 124909320 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 SLC12A8_ENST00000393469,NS,carcinoma,0,1 SLC12A8 NM_024628 exon3 c.A97T p.M33L CCCACATGAACAG . 334.0 60.0 304.0 0.0 . 81 . . Atlas-SNP NEK11 79858 hgsc.bcm.edu hg19 3 130884346 130884346 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . NEK11 NM_024800 exon12 c.A1159T p.S387C CAGCTGAGTGTTG . 186.0 98.0 171.0 0.0 . 76 . . Atlas-SNP PLSCR4 57088 hgsc.bcm.edu hg19 3 145924525 145924525 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PLSCR4 NM_020353 exon4 c.C142T p.P48S TAGGTGGAGGGAC . 124.0 17.0 108.0 0.0 . 44 . . Atlas-SNP ARHGEF26 26084 hgsc.bcm.edu hg19 3 153842229 153842229 + Missense_Mutation SNP G G C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 SGEF,colon,carcinoma,0,3 ARHGEF26 NM_001251962 exon3 c.G1114C p.D372H ACATTTGATGGGG . 50.0 28.0 48.0 0.0 . 158 . . Atlas-SNP TTC14 151613 hgsc.bcm.edu hg19 3 180322340 180322340 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TTC14 NM_001042601 exon5 c.C646A p.L216I CCACACCTATCTG . 167.0 41.0 153.0 0.0 . 112 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195507956 195507956 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MUC4 NM_018406 exon2 c.A10495T p.T3499S CACCTGTGGATGC . 195.0 33.0 187.0 0.0 . 1505 . . Atlas-SNP POLN 353497 hgsc.bcm.edu hg19 4 2209958 2209958 + Missense_Mutation SNP T T G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . POLN NM_181808 exon3 c.A470C p.K157T ATATGTTTTCTTT . 143.0 21.0 82.0 0.0 . 82 . . Atlas-SNP RGS12 6002 hgsc.bcm.edu hg19 4 3427240 3427240 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RGS12 NM_002926 exon14 c.A3284G p.D1095G GTCTGGACGGACA . 148.0 35.0 131.0 0.0 . 128 . . Atlas-SNP UCHL1 7345 hgsc.bcm.edu hg19 4 41266155 41266155 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . UCHL1 NM_004181 exon8 c.A562T p.S188C GGCGCCAGTTCAG . 97.0 53.0 69.0 0.0 . 19 . . Atlas-SNP POLR2B 5431 hgsc.bcm.edu hg19 4 57873096 57873096 + Silent SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . POLR2B NM_000938 exon10 c.A1332T p.L444L TGGCCTAAAATAC . 461.0 111.0 263.0 0.0 . 108 . . Atlas-SNP LPHN3 23284 hgsc.bcm.edu hg19 4 62862048 62862048 + Silent SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . LPHN3 NM_015236 exon17 c.T3072C p.F1024F GAGTTTTATAGGA . 65.0 50.0 132.0 0.0 . 800 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87692580 87692580 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PTPN13 NM_080685 exon31 c.T5075A p.V1692E ACATGGTATCACA . 100.0 82.0 223.0 0.0 . 203 . . Atlas-SNP INTU 27152 hgsc.bcm.edu hg19 4 128628111 128628111 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . INTU NM_015693 exon12 c.G2258A p.G753E AAAGTGGGACCTT . 39.0 31.0 77.0 0.0 . 92 . . Atlas-SNP SH3D19 152503 hgsc.bcm.edu hg19 4 152080413 152080413 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SH3D19 NM_001128923 exon9 c.T894A p.N298K CTCAACATTACTG . 68.0 21.0 96.0 0.0 . 54 . . Atlas-SNP IRX4 50805 hgsc.bcm.edu hg19 5 1882077 1882077 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . IRX4 NM_016358 exon2 c.T142A p.Y48N GGCAGTAGACCGG . 87.0 59.0 76.0 0.0 . 45 . . Atlas-SNP ERBB2IP 55914 hgsc.bcm.edu hg19 5 65322213 65322213 + Missense_Mutation SNP A A C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ERBB2IP NM_001253701 exon13 c.A1104C p.Q368H TATGCAAAAATTA . 88.0 18.0 82.0 0.0 . 120 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90070014 90070014 + Silent SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GPR98 NM_032119 exon60 c.G12297A p.Q4099Q GTCCCAGAAGACC . 51.0 11.0 65.0 0.0 . 605 . . Atlas-SNP ADAMTS19 171019 hgsc.bcm.edu hg19 5 128977564 128977564 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ADAMTS19 NM_133638 exon11 c.A1765T p.T589S ATTTGCACAGGAT . 79.0 20.0 86.0 0.0 . 216 . . Atlas-SNP CXXC5 51523 hgsc.bcm.edu hg19 5 139060694 139060694 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CXXC5 NM_016463 exon2 c.G586A p.V196M GAGGCTGTGGCAG . 55.0 13.0 72.0 0.0 . 27 . . Atlas-SNP PCDHB13 56123 hgsc.bcm.edu hg19 5 140595369 140595369 + Silent SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 PCDHB13,colon,carcinoma,0,2 PCDHB13 NM_018933 exon1 c.G1674A p.S558S CAACTCGCCCTTC . 30.0 17.0 25.0 0.0 . 142 . . Atlas-SNP GRIA1 2890 hgsc.bcm.edu hg19 5 153035418 153035418 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GRIA1 NM_001258021 exon5 c.A715T p.I239F CACTACATTCTTG . 75.0 22.0 66.0 0.0 . 321 . . Atlas-SNP TIMD4 91937 hgsc.bcm.edu hg19 5 156381475 156381475 + Silent SNP A A T rs371298031 alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TIMD4 NM_138379 exon2 c.T351A p.P117P CCAGCCAGGCACT . 68.0 45.0 72.0 0.0 . 94 . . Atlas-SNP NIPAL4 348938 hgsc.bcm.edu hg19 5 156899882 156899882 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . NIPAL4 NM_001099287 exon6 c.G1315A p.D439N CTGGAAGACAAGA . 64.0 43.0 74.0 0.0 . 48 . . Atlas-SNP C5orf54 63920 hgsc.bcm.edu hg19 5 159821530 159821530 + Missense_Mutation SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . C5orf54 NM_022090 exon2 c.G968C p.S323T AGGACACTATATT . 81.0 18.0 88.0 0.0 . 46 . . Atlas-SNP FGFR4 2264 hgsc.bcm.edu hg19 5 176520211 176520211 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . FGFR4 NM_002011 exon9 c.C1130T p.S377F CGGGCTCCCTGGC . 85.0 25.0 109.0 0.0 . 174 . . Atlas-SNP ZNF454 285676 hgsc.bcm.edu hg19 5 178392529 178392529 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZNF454 NM_001178089 exon5 c.A1124T p.Q375L AACATCAGAGAAT . 98.0 34.0 101.0 0.0 . 99 . . Atlas-SNP HIVEP1 3096 hgsc.bcm.edu hg19 6 12124094 12124094 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . HIVEP1 NM_002114 exon4 c.G4066T p.V1356F CTGAATGTTCCTG . 158.0 24.0 86.0 0.0 . 242 . . Atlas-SNP POM121L2 94026 hgsc.bcm.edu hg19 6 27279067 27279067 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . POM121L2 NM_033482 exon1 c.C883A p.P295T AGGAAGGCCGATG . 117.0 63.0 92.0 0.0 . 61 . . Atlas-SNP OR12D3 81797 hgsc.bcm.edu hg19 6 29342331 29342331 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OR12D3 NM_030959 exon1 c.T734C p.M245T ACCACCATAAAAT . 173.0 16.0 137.0 0.0 . 55 . . Atlas-SNP RNF39 80352 hgsc.bcm.edu hg19 6 30039406 30039406 + Missense_Mutation SNP T T G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RNF39 NM_025236 exon4 c.A745C p.S249R GTACGCTGCGGCG . 20.0 8.0 2.0 0.0 . 27 . . Atlas-SNP DPCR1 135656 hgsc.bcm.edu hg19 6 30918786 30918786 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DPCR1 NM_080870 exon2 c.G2545T p.A849S AGCACAGCCAATG . 94.0 45.0 45.0 0.0 . 99 . . Atlas-SNP TNXB 7148 hgsc.bcm.edu hg19 6 32015532 32015532 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TNXB NM_019105 exon30 c.A10297T p.I3433F CAGAGATGGGGCC . 76.0 22.0 45.0 0.0 . 553 . . Atlas-SNP LRFN2 57497 hgsc.bcm.edu hg19 6 40400714 40400714 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . LRFN2 NM_020737 exon2 c.C139A p.P47T CAGGGGGTACAAA . 146.0 63.0 91.0 0.0 . 133 . . Atlas-SNP TREML1 340205 hgsc.bcm.edu hg19 6 41121500 41121500 + Silent SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TREML1 NM_178174 exon2 c.C372T p.P124P ACCTGGGGGCAGT . 150.0 20.0 85.0 0.0 . 20 . . Atlas-SNP CAPN11 11131 hgsc.bcm.edu hg19 6 44149032 44149032 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CAPN11 NM_007058 exon19 c.T1913A p.L638Q AGATCCTGTGGAA . 95.0 52.0 63.0 0.0 . 66 . . Atlas-SNP GSTA4 2941 hgsc.bcm.edu hg19 6 52849299 52849299 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GSTA4 NM_001512 exon5 c.A377T p.Q126L GCCTTCTGGGCCA . 156.0 65.0 70.0 0.0 . 20 . . Atlas-SNP KHDRBS2 202559 hgsc.bcm.edu hg19 6 62407112 62407112 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KHDRBS2 NM_152688 exon8 c.T940A p.Y314N TGTCATAGGCATC . 94.0 43.0 53.0 0.0 . 103 . . Atlas-SNP DDX43 55510 hgsc.bcm.edu hg19 6 74118988 74118988 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DDX43 NM_018665 exon10 c.C1197A p.D399E AGCAGACAAGATG . 77.0 17.0 90.0 0.0 . 69 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75887629 75887629 + Silent SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . COL12A1 NM_004370 exon12 c.A2187T p.L729L CACCTTTAGGTTT . 36.0 33.0 38.0 0.0 . 385 . . Atlas-SNP SNAP91 9892 hgsc.bcm.edu hg19 6 84417640 84417640 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 SNAP91_ENST00000439399,right_lower_lobe,carcinoma,0,2 SNAP91 NM_001242794 exon2 c.G7T p.G3C TTTGGCCCGACAT . 42.0 41.0 25.0 0.0 . 199 . . Atlas-SNP CNR1 1268 hgsc.bcm.edu hg19 6 88854869 88854869 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CNR1 NM_001160258 exon4 c.G125A p.G42E AAGTACCCTAATT . 102.0 90.0 87.0 0.0 . 91 . . Atlas-SNP TCF21 6943 hgsc.bcm.edu hg19 6 134210900 134210900 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TCF21 NM_003206 exon1 c.G365A p.R122K CGCTCAGGCTGGC . 155.0 36.0 221.0 0.0 . 30 . . Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136597179 136597179 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . BCLAF1 NM_014739 exon5 c.A1484T p.Q495L GGTGACTGAGTTT . 132.0 42.0 113.0 0.0 . 203 . . Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151151983 151151983 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PLEKHG1 NM_001029884 exon16 c.A1736G p.D579G GTGAAGATAGCAC . 60.0 50.0 101.0 0.0 . 97 . . Atlas-SNP TTLL2 83887 hgsc.bcm.edu hg19 6 167754699 167754699 + Silent SNP C C A rs201555411 by1000genomes;alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 TTLL2,NS,carcinoma,0,1 TTLL2 NM_031949 exon3 c.C1311A p.I437I CAACATCGACGCT . 56.0 54.0 66.0 0.0 . 82 . C|1.000;T|0.000 Atlas-SNP PHF10 55274 hgsc.bcm.edu hg19 6 170112536 170112536 + Silent SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PHF10 NM_018288 exon8 c.A903T p.S301S ATCATCTGAATCA . 171.0 147.0 258.0 0.0 . 76 . . Atlas-SNP FTSJ2 29960 hgsc.bcm.edu hg19 7 2279075 2279075 + Missense_Mutation SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . FTSJ2 NM_013393 exon2 c.G276C p.Q92H GACCTTCTGCACC . 38.0 20.0 38.0 0.0 . 22 . . Atlas-SNP USP42 84132 hgsc.bcm.edu hg19 7 6189834 6189834 + Silent SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . USP42 NM_032172 exon13 c.G2007A p.P669P TGACCCGAAAGAA . 50.0 31.0 48.0 0.0 . 138 . . Atlas-SNP PHF14 9678 hgsc.bcm.edu hg19 7 11030469 11030469 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PHF14 NM_014660 exon4 c.A1040G p.H347R CAGTCCATGAAGG . 122.0 50.0 99.0 0.0 . 90 . . Atlas-SNP IGF2BP3 10643 hgsc.bcm.edu hg19 7 23391021 23391021 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . IGF2BP3 NM_006547 exon6 c.T586A p.L196M GAGGCAAATCACA . 69.0 35.0 67.0 0.0 . 71 . . Atlas-SNP AVL9 23080 hgsc.bcm.edu hg19 7 32599056 32599056 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . AVL9 NM_015060 exon10 c.C1195A p.P399T GGCATGCCCCTGG . 128.0 32.0 126.0 0.0 . 66 . . Atlas-SNP GLI3 2737 hgsc.bcm.edu hg19 7 42007259 42007259 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GLI3 NM_000168 exon14 c.T2366A p.M789K GGAAACATTCCAT . 144.0 65.0 139.0 0.0 . 312 . . Atlas-SNP HECW1 23072 hgsc.bcm.edu hg19 7 43484963 43484963 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . HECW1 NM_015052 exon11 c.C2192A p.T731K AGAGCACGGTCTT . 65.0 29.0 93.0 0.0 . 540 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48278844 48278844 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ABCA13 NM_152701 exon9 c.A904T p.T302S ATTCCCACAGACA . 50.0 21.0 53.0 0.0 . 1192 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100676441 100676441 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MUC17 NM_001040105 exon3 c.G1744A p.V582M AGGCTGGTGGTCA . 69.0 38.0 77.0 0.0 . 804 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100684989 100684989 + Missense_Mutation SNP C C T rs190089107 bycluster;by1000genomes;alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MUC17 NM_001040105 exon3 c.C10292T p.T3431I TGGTGACCACTTC . 99.0 47.0 97.0 0.0 . 804 . C|1.000;G|0.000 Atlas-SNP RBM28 55131 hgsc.bcm.edu hg19 7 127978350 127978350 + Silent SNP T T G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RBM28 NM_018077 exon5 c.A495C p.L165L TGCTTCTAGGAGG . 103.0 43.0 106.0 0.0 . 71 . . Atlas-SNP CPA4 51200 hgsc.bcm.edu hg19 7 129951962 129951962 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CPA4 NM_016352 exon10 c.T1078A p.Y360N ACTGTCTGTAAGT . 51.0 25.0 57.0 0.0 . 47 . . Atlas-SNP HIPK2 28996 hgsc.bcm.edu hg19 7 139416674 139416674 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . HIPK2 NM_022740 exon2 c.A160T p.S54C TCTTGCTCTGGCT . 122.0 66.0 135.0 0.0 . 192 . . Atlas-SNP HIPK2 28996 hgsc.bcm.edu hg19 7 139416675 139416675 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . HIPK2 NM_022740 exon2 c.G159T p.Q53H CTTGCTCTGGCTA . 124.0 67.0 135.0 0.0 . 192 . . Atlas-SNP MRPS33 51650 hgsc.bcm.edu hg19 7 140710338 140710338 + Silent SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MRPS33 NM_016071 exon2 c.A96G p.K32K CACCACTTTCATA . 156.0 57.0 161.0 0.0 . 8 . . Atlas-SNP CNPY1 285888 hgsc.bcm.edu hg19 7 155301641 155301641 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CNPY1 NM_001103176 exon2 c.A92T p.E31V TTAAATTCTTGGT . 107.0 42.0 124.0 0.0 . 20 . . Atlas-SNP MNX1 3110 hgsc.bcm.edu hg19 7 156802352 156802352 + Splice_Site SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MNX1 NM_005515 exon2 c.691+2T>A . GTACTCACAGTTG . 55.0 24.0 69.0 0.0 . 17 . . Atlas-SNP MSR1 4481 hgsc.bcm.edu hg19 8 16035438 16035438 + Silent SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MSR1 NM_138715 exon2 c.T60A p.S20S TTTCACAGATTCG . 41.0 36.0 77.0 0.0 . 140 . . Atlas-SNP TEX15 56154 hgsc.bcm.edu hg19 8 30705371 30705371 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TEX15 NM_031271 exon1 c.T1163C p.I388T TGGGGTATGTCTT . 60.0 51.0 124.0 0.0 . 350 . . Atlas-SNP RGS20 8601 hgsc.bcm.edu hg19 8 54792132 54792132 + Silent SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RGS20 NM_170587 exon2 c.C480T p.D160D AGAAGACGCCACC . 95.0 20.0 90.0 0.0 . 51 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69143582 69143582 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PREX2 NM_024870 exon40 c.G4790T p.C1597F AGCTGTGCGAGCC . 92.0 34.0 70.0 0.0 . 614 . . Atlas-SNP TERF1 7013 hgsc.bcm.edu hg19 8 73932979 73932979 + Missense_Mutation SNP G G C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TERF1 NM_017489 exon3 c.G476C p.G159A TTTGGGGTTCAAT . 356.0 135.0 266.0 0.0 . 48 . . Atlas-SNP ZFAND1 79752 hgsc.bcm.edu hg19 8 82615054 82615054 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZFAND1 NM_024699 exon8 c.A683G p.D228G GTATGATCCAAGG . 202.0 25.0 182.0 0.0 . 29 . . Atlas-SNP TP53INP1 94241 hgsc.bcm.edu hg19 8 95952315 95952315 + Silent SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TP53INP1 NM_001135733 exon3 c.C246A p.S82S AAAGCAGGAATCA . 165.0 23.0 161.0 0.0 . 22 . . Atlas-SNP OSR2 116039 hgsc.bcm.edu hg19 8 99963924 99963924 + Missense_Mutation SNP T T G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OSR2 NM_001142462 exon4 c.T934G p.F312V CAGGACTTCTAGA . 69.0 29.0 49.0 0.0 . 56 . . Atlas-SNP DENND3 22898 hgsc.bcm.edu hg19 8 142151309 142151309 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DENND3 NM_014957 exon4 c.A269G p.Y90C ATGAGTACTGTTT . 78.0 23.0 61.0 0.0 . 127 . . Atlas-SNP ZNF16 7564 hgsc.bcm.edu hg19 8 146157778 146157778 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZNF16 NM_006958 exon3 c.A395T p.Q132L CCCTCCTGGGAGA . 91.0 46.0 68.0 0.0 . 80 . . Atlas-SNP VLDLR 7436 hgsc.bcm.edu hg19 9 2641451 2641451 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . VLDLR NM_003383 exon4 c.T400A p.C134S TGGAGATGTGATG . 60.0 50.0 127.0 0.0 . 68 . . Atlas-SNP GABBR2 9568 hgsc.bcm.edu hg19 9 101068512 101068512 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GABBR2 NM_005458 exon15 c.C2120T p.A707V ACAGCGGCCCCGA . 77.0 69.0 186.0 0.0 . 126 . . Atlas-SNP AKNA 80709 hgsc.bcm.edu hg19 9 117139221 117139221 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . AKNA NM_030767 exon3 c.G866A p.C289Y TGAGGGCAGAAGA . 30.0 26.0 91.0 0.0 . 119 . . Atlas-SNP URM1 81605 hgsc.bcm.edu hg19 9 131133678 131133678 + Missense_Mutation SNP G G C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . URM1 NM_001265582 exon1 c.G19C p.V7L TTGTCAGTGGAGG . 40.0 33.0 90.0 0.0 . 19 . . Atlas-SNP NTNG2 84628 hgsc.bcm.edu hg19 9 135116364 135116364 + Silent SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . NTNG2 NM_032536 exon7 c.C1290A p.R430R GTGCCGCGAGGGC . 23.0 22.0 47.0 0.0 . 66 . . Atlas-SNP DHTKD1 55526 hgsc.bcm.edu hg19 10 12126675 12126675 + Silent SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DHTKD1 NM_018706 exon3 c.G447T p.R149R CAAGCGGTTTGAG . 132.0 63.0 139.0 0.0 . 104 . . Atlas-SNP MKX 283078 hgsc.bcm.edu hg19 10 28023482 28023482 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MKX NM_001242702 exon5 c.A741T p.Q247H GTTTCTTTGCCTT . 119.0 63.0 142.0 0.0 . 43 . . Atlas-SNP EPC1 80314 hgsc.bcm.edu hg19 10 32560684 32560684 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . EPC1 NM_025209 exon14 c.A2236T p.T746S GAGTTGTTGCAGA . 139.0 71.0 147.0 0.0 . 74 . . Atlas-SNP FRMPD2 143162 hgsc.bcm.edu hg19 10 49392912 49392912 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . FRMPD2 NM_001018071 exon19 c.A2372T p.N791I CCCTCATTAATGA . 78.0 28.0 86.0 0.0 . 157 . . Atlas-SNP VSTM4 196740 hgsc.bcm.edu hg19 10 50256624 50256624 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . VSTM4 NM_001031746 exon6 c.G674T p.G225V GTCTCCCCTGAGC . 79.0 12.0 72.0 0.0 . 83 . . Atlas-SNP CLRN3 119467 hgsc.bcm.edu hg19 10 129681969 129681969 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CLRN3 NM_152311 exon2 c.G400T p.G134W CGAGCCCGTTCCA . 89.0 43.0 120.0 0.0 . 27 . . Atlas-SNP GPR123 84435 hgsc.bcm.edu hg19 10 134942775 134942775 + Silent SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GPR123 NM_001083909 exon7 c.C1443T p.V481V CATGGTCACCCAG . 49.0 22.0 58.0 0.0 . 118 . . Atlas-SNP HBE1 3046 hgsc.bcm.edu hg19 11 5291051 5291051 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . HBE1 NM_005330 exon1 c.G70T p.A24S CTCCAGCCTCTTC . 61.0 11.0 91.0 0.0 . 42 . . Atlas-SNP SWAP70 23075 hgsc.bcm.edu hg19 11 9750888 9750888 + Splice_Site SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SWAP70 NM_015055 exon6 c.790-2A>T . TGTTTTAGTCCTT . 115.0 36.0 145.0 0.0 . 40 . . Atlas-SNP SBF2 81846 hgsc.bcm.edu hg19 11 9853870 9853870 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SBF2 NM_030962 exon27 c.T3553C p.W1185R TCTTCCAACATAC . 98.0 24.0 120.0 0.0 . 146 . . Atlas-SNP RASSF10 644943 hgsc.bcm.edu hg19 11 13031125 13031125 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . . NM_001080521 exon1 c.T2A p.M1K GCGCCATGGATCC . 39.0 25.0 37.0 0.0 . . . . Atlas-SNP CD44 960 hgsc.bcm.edu hg19 11 35236397 35236397 + Splice_Site SNP A A T rs200427375 alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CD44 NM_000610 exon15 c.1811-2A>T . CATTACAGGAGAC . 57.0 36.0 92.0 0.0 . 48 . . Atlas-SNP OR8H2 390151 hgsc.bcm.edu hg19 11 55873254 55873254 + Missense_Mutation SNP T T G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OR8H2 NM_001005200 exon1 c.T736G p.L246V CATCTCTTGGGAG . 85.0 24.0 113.0 0.0 . 117 . . Atlas-SNP OR8H1 219469 hgsc.bcm.edu hg19 11 56058142 56058142 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OR8H1 NM_001005199 exon1 c.G397A p.V133I TAATAACTGGGTA . 86.0 21.0 124.0 0.0 . 89 . . Atlas-SNP CLP1 10978 hgsc.bcm.edu hg19 11 57427466 57427466 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CLP1 NM_006831 exon2 c.A518T p.D173V CTGCAGATGTCGA . 56.0 30.0 87.0 0.0 . 40 . . Atlas-SNP SLC22A9 114571 hgsc.bcm.edu hg19 11 63176219 63176219 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SLC22A9 NM_080866 exon9 c.T1469C p.L490P TGATCCTAAGTGT . 87.0 29.0 102.0 0.0 . 77 . . Atlas-SNP SLC22A9 114571 hgsc.bcm.edu hg19 11 63177289 63177289 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SLC22A9 NM_080866 exon10 c.A1617T p.R539S CCCCAGAGAACCA . 61.0 41.0 72.0 0.0 . 77 . . Atlas-SNP C11orf84 144097 hgsc.bcm.edu hg19 11 63585819 63585819 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . C11orf84 NM_138471 exon3 c.C589T p.R197C GGACTCCGCCCCC . 31.0 19.0 52.0 0.0 . 33 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92534161 92534161 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . FAT3 NM_001008781 exon9 c.T7982C p.V2661A GGATGGTCACAAA . 83.0 51.0 121.0 0.0 . 1822 . . Atlas-SNP MMP7 4316 hgsc.bcm.edu hg19 11 102398359 102398359 + Missense_Mutation SNP C C A rs138303399 alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MMP7 NM_002423 exon3 c.G380T p.R127L ACTAATCGATCCA . 68.0 20.0 93.0 0.0 . 27 . C|1.000;T|0.000 Atlas-SNP GUCY1A2 2977 hgsc.bcm.edu hg19 11 106810255 106810255 + Silent SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GUCY1A2 NM_000855 exon4 c.G1137A p.L379L TCGCAGCAGGACC . 123.0 35.0 189.0 0.0 . 180 . . Atlas-SNP DRD2 1813 hgsc.bcm.edu hg19 11 113281601 113281601 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DRD2 NM_000795 exon8 c.A1180G p.I394V TCAGGATGTGTGT . 104.0 65.0 149.0 0.0 . 98 . . Atlas-SNP OR8D1 283159 hgsc.bcm.edu hg19 11 124180322 124180322 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OR8D1 NM_001002917 exon1 c.T341A p.L114H GTCAGGAGGTAAC . 118.0 83.0 117.0 0.0 . 53 . . Atlas-SNP CACNA1C 775 hgsc.bcm.edu hg19 12 2717739 2717739 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CACNA1C NM_199460 exon28 c.T3479A p.V1160E ACCGTGTGGAGAT . 115.0 18.0 92.0 0.0 . 1023 . . Atlas-SNP TULP3 7289 hgsc.bcm.edu hg19 12 3047308 3047308 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TULP3 NM_003324 exon10 c.A1052T p.Q351L GGTGGCAGAACAG . 124.0 93.0 104.0 0.0 . 45 . . Atlas-SNP KCNA5 3741 hgsc.bcm.edu hg19 12 5153590 5153590 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KCNA5 NM_002234 exon1 c.C277T p.P93S CCGCCTCCCGAGG . 30.0 22.0 31.0 0.0 . 138 . . Atlas-SNP CLEC2B 9976 hgsc.bcm.edu hg19 12 10005943 10005943 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CLEC2B NM_005127 exon5 c.T406C p.C136R TGTAACATCTAGC . 79.0 60.0 77.0 0.0 . 19 . . Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43826449 43826449 + Silent SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ADAMTS20 NM_025003 exon20 c.T2886C p.H962H GTTACCATGGCAT . 141.0 94.0 120.0 0.0 . 635 . . Atlas-SNP HDAC7 51564 hgsc.bcm.edu hg19 12 48191236 48191236 + Missense_Mutation SNP T T G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . HDAC7 NM_001098416 exon6 c.A508C p.S170R AGCTGCTGAGCAT . 72.0 54.0 68.0 0.0 . 71 . . Atlas-SNP LARP4 113251 hgsc.bcm.edu hg19 12 50869368 50869368 + Silent SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . LARP4 NM_052879 exon16 c.A1896T p.S632S ATCTTCAGTTCTT . 175.0 45.0 152.0 0.0 . 58 . . Atlas-SNP STAT6 6778 hgsc.bcm.edu hg19 12 57498539 57498539 + Silent SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . STAT6 NM_001178079 exon10 c.G1059C p.G353G GCAGTTCCCAGGA . 71.0 19.0 69.0 0.0 . 69 . . Atlas-SNP C12orf56 115749 hgsc.bcm.edu hg19 12 64724758 64724758 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . C12orf56 NM_001170633 exon3 c.T470A p.L157Q TCTTTCAGACTTC . 70.0 57.0 65.0 0.0 . 42 . . Atlas-SNP UTP20 27340 hgsc.bcm.edu hg19 12 101693811 101693811 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . UTP20 NM_014503 exon14 c.G1647T p.M549I CTTCATGACTGTT . 198.0 180.0 286.0 1.0 . 222 . . Atlas-SNP CCDC53 51019 hgsc.bcm.edu hg19 12 102419817 102419817 + Splice_Site SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CCDC53 NM_016053 exon7 c.436-1G>C . TACACCCTAAGCA . 64.0 15.0 63.0 0.0 . 14 . . Atlas-SNP VSIG10 54621 hgsc.bcm.edu hg19 12 118533474 118533474 + Silent SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . VSIG10 NM_019086 exon2 c.A225T p.P75P CTCAGCTGGCCGG . 139.0 132.0 137.0 0.0 . 41 . . Atlas-SNP WASF3 10810 hgsc.bcm.edu hg19 13 27239184 27239184 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . WASF3 NM_006646 exon4 c.A153G p.I51M AGACATATTTGGT . 41.0 15.0 71.0 0.0 . 68 . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 29001941 29001941 + Silent SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . FLT1 NM_002019 exon9 c.C1224T p.S408S TTTTATGCTCAGC . 38.0 19.0 83.0 0.0 . 393 . . Atlas-SNP EPSTI1 94240 hgsc.bcm.edu hg19 13 43469145 43469145 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . EPSTI1 NM_001002264 exon11 c.G948T p.W316C ACTCACCCAGCTG . 21.0 13.0 83.0 0.0 . 47 . . Atlas-SNP EPSTI1 94240 hgsc.bcm.edu hg19 13 43469146 43469146 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . EPSTI1 NM_001002264 exon11 c.G947T p.W316L CTCACCCAGCTGT . 21.0 13.0 82.0 0.0 . 47 . . Atlas-SNP RB1 5925 hgsc.bcm.edu hg19 13 49027173 49027173 + Missense_Mutation SNP A A C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RB1 NM_000321 exon18 c.A1740C p.E580D CCGAGAAGGACCA . 32.0 11.0 46.0 0.0 . 1068 . . Atlas-SNP ABCC4 10257 hgsc.bcm.edu hg19 13 95816633 95816633 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ABCC4 NM_005845 exon16 c.A2174T p.Q725L TTTACCTGAGCTG . 60.0 15.0 100.0 0.0 . 248 . . Atlas-SNP RNASE1 6035 hgsc.bcm.edu hg19 14 21270099 21270099 + Silent SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RNASE1 NM_198235 exon3 c.A129T p.S43S ACTGTCTGAGTCC . 43.0 8.0 41.0 0.0 . 14 . . Atlas-SNP TOX4 9878 hgsc.bcm.edu hg19 14 21961062 21961062 + Silent SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 TOX4,NS,carcinoma,0,2 TOX4 NM_014828 exon7 c.T1287A p.A429A AGCAGCTGCTGCT . 70.0 3.0 102.0 0.0 . 50 . . Atlas-SNP DACT1 51339 hgsc.bcm.edu hg19 14 59112597 59112597 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DACT1 NM_016651 exon4 c.G1256T p.W419L AGCAGTGGTCGAA . 38.0 19.0 59.0 0.0 . 119 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64522760 64522760 + Silent SNP C C G rs373355920 alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 SYNE2,caecum,carcinoma,0,1 SYNE2 NM_182914 exon49 c.C9843G p.P3281P TATACCCTACAGA . 176.0 58.0 227.0 0.0 . 577 . . Atlas-SNP EXD2 55218 hgsc.bcm.edu hg19 14 69676318 69676318 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . EXD2 NM_001193361 exon2 c.A131T p.Q44L AGCCACAGCAGAA . 82.0 55.0 110.0 0.0 . 43 . . Atlas-SNP MLH3 27030 hgsc.bcm.edu hg19 14 75505088 75505088 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MLH3 NM_014381 exon6 c.A3598G p.I1200V AGGCAATAAACTT . 57.0 21.0 77.0 0.0 . 200 . . Atlas-SNP SERPINA3 12 hgsc.bcm.edu hg19 14 95088801 95088801 + Silent SNP A A T rs1802958 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SERPINA3 NM_001085 exon4 c.A1041T p.T347T GATCACAGGGGCC . 76.0 21.0 124.0 0.0 . 78 . A|0.990;G|0.010 Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28460799 28460799 + Missense_Mutation SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 HERC2,NS,carcinoma,0,1 HERC2 NM_004667 exon39 c.G6178C p.A2060P AGGGTGCGTGCCC . 101.0 65.0 123.0 0.0 . 501 . . Atlas-SNP TMCO5A 145942 hgsc.bcm.edu hg19 15 38228513 38228513 + Splice_Site SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TMCO5A . . . . GTCTATAGGTCGG . 66.0 17.0 67.0 0.0 . 42 . . Atlas-SNP JMJD7-PLA2G4B 8681 hgsc.bcm.edu hg19 15 42137485 42137485 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . JMJD7-PLA2G4B NM_005090 exon19 c.A2017G p.K673E AACACCAAAGGGC . 48.0 8.0 85.0 0.0 . 90 . . Atlas-SNP TP53BP1 7158 hgsc.bcm.edu hg19 15 43700285 43700285 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TP53BP1 NM_001141980 exon27 c.C5602A p.Q1868K GGGGTTGCCTATG . 35.0 5.0 71.0 0.0 . 157 . . Atlas-SNP SLC12A1 6557 hgsc.bcm.edu hg19 15 48577419 48577419 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SLC12A1 NM_001184832 exon21 c.A2602T p.N868Y AAGTTGAACATTA . 156.0 90.0 223.0 1.0 . 243 . . Atlas-SNP PRTG 283659 hgsc.bcm.edu hg19 15 55931838 55931838 + Splice_Site SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PRTG NM_173814 exon14 c.2324+2T>A . CTACATACGTTTG . 91.0 31.0 102.0 0.0 . 110 . . Atlas-SNP RFX7 64864 hgsc.bcm.edu hg19 15 56388218 56388218 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RFX7 NM_022841 exon9 c.G1708A p.G570R TCTGCCCCAAAAG . 29.0 7.0 64.0 0.0 . 170 . . Atlas-SNP RLBP1 6017 hgsc.bcm.edu hg19 15 89754011 89754011 + Silent SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RLBP1 NM_000326 exon8 c.C714A p.I238I GAAGTGGATGGCT . 211.0 87.0 202.0 0.0 . 34 . . Atlas-SNP FLYWCH1 84256 hgsc.bcm.edu hg19 16 2980531 2980531 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . FLYWCH1 NM_020912 exon4 c.A443G p.Q148R GCCGCCAACATGC . 69.0 27.0 50.0 0.0 . 27 . . Atlas-SNP CCDC64B 146439 hgsc.bcm.edu hg19 16 3085406 3085406 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CCDC64B NM_001103175 exon1 c.T92A p.L31Q CGCTCCAGCACAA . 66.0 39.0 59.0 0.0 . 19 . . Atlas-SNP RBFOX1 54715 hgsc.bcm.edu hg19 16 7629893 7629893 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 RBFOX1_ENST00000550418,NS,adenoma,0,6 RBFOX1 NM_145891 exon3 c.C445T p.R149W AGGTTCCGGGATC . 214.0 103.0 165.0 0.0 . 341 . . Atlas-SNP KIAA0430 9665 hgsc.bcm.edu hg19 16 15727694 15727694 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KIAA0430 NM_014647 exon5 c.C1013A p.P338Q ACTTCTGGTGACC . 133.0 51.0 110.0 0.0 . 154 . . Atlas-SNP MYH11 4629 hgsc.bcm.edu hg19 16 15853461 15853461 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MYH11 NM_001040114 exon13 c.T1394A p.L465Q ATATCCAGGATCC . 125.0 63.0 122.0 0.0 . 520 . . Atlas-SNP CHD9 80205 hgsc.bcm.edu hg19 16 53341643 53341643 + Missense_Mutation SNP A A C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CHD9 NM_025134 exon33 c.A6831C p.K2277N TCTGAAAGGAAAG . 183.0 31.0 165.0 0.0 . 203 . . Atlas-SNP GPR114 221188 hgsc.bcm.edu hg19 16 57608882 57608882 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GPR114 NM_153837 exon11 c.A1364G p.D455G GCCATGACACTGT . 36.0 6.0 36.0 0.0 . 52 . . Atlas-SNP CCDC135 84229 hgsc.bcm.edu hg19 16 57731872 57731872 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CCDC135 NM_032269 exon2 c.T11A p.L4Q AGGTCCTGAGGGA . 39.0 8.0 52.0 0.0 . 97 . . Atlas-SNP CTCF 10664 hgsc.bcm.edu hg19 16 67662374 67662374 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CTCF NM_006565 exon9 c.G1620A p.M540I CGACATGCACTTC . 178.0 113.0 168.0 0.0 . 193 . . Atlas-SNP SLC12A4 6560 hgsc.bcm.edu hg19 16 67985728 67985728 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SLC12A4 NM_001145962 exon7 c.A1136T p.Q379L CCACCCTGGAGCA . 72.0 44.0 55.0 0.0 . 81 . . Atlas-SNP HYDIN 54768 hgsc.bcm.edu hg19 16 70852337 70852337 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . HYDIN NM_001270974 exon84 c.A14566T p.N4856Y GAGGGTTCTCCAA . 77.0 16.0 69.0 0.0 . 788 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88499480 88499480 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZNF469 NM_001127464 exon2 c.C5518T p.P1840S ACTGCCCCCCGGG . 118.0 25.0 130.0 0.0 . 121 . . Atlas-SNP CDH15 1013 hgsc.bcm.edu hg19 16 89256721 89256721 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CDH15 NM_004933 exon8 c.C1049A p.A350E TGCAGGCGGCTGC . 111.0 22.0 161.0 0.0 . 54 . . Atlas-SNP ACAP1 9744 hgsc.bcm.edu hg19 17 7251303 7251303 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ACAP1 NM_014716 exon15 c.T1406A p.L469Q CAGAACTAGTGAA . 25.0 17.0 38.0 0.0 . 66 . . Atlas-SNP SHMT1 6470 hgsc.bcm.edu hg19 17 18250860 18250860 + Nonsense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SHMT1 NM_148918 exon5 c.A469T p.K157X TCTTCTTGTCTGT . 137.0 43.0 86.0 0.0 . 36 . . Atlas-SNP RDM1 201299 hgsc.bcm.edu hg19 17 34257110 34257110 + Silent SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RDM1 NM_001034836 exon2 c.G246T p.R82R CTGCTTCCGGTCG . 158.0 31.0 104.0 0.0 . 46 . . Atlas-SNP KRT40 125115 hgsc.bcm.edu hg19 17 39140202 39140202 + Silent SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KRT40 NM_182497 exon3 c.C324A p.R108R CAGGCTGCGCACC . 120.0 46.0 93.0 0.0 . 27 . . Atlas-SNP KRT37 8688 hgsc.bcm.edu hg19 17 39579146 39579146 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KRT37 NM_003770 exon3 c.G616A p.D206N ACTTGTCCGCCTC . 49.0 25.0 50.0 0.0 . 61 . . Atlas-SNP KRT35 3886 hgsc.bcm.edu hg19 17 39637038 39637038 + Silent SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KRT35 NM_002280 exon1 c.G312C p.L104L GTCGTTCAGGGAT . 103.0 57.0 96.0 0.0 . 58 . . Atlas-SNP AOC2 314 hgsc.bcm.edu hg19 17 41001329 41001329 + Missense_Mutation SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . AOC2 NM_009590 exon2 c.C1815G p.S605R CCACAGCCCCCTT . 117.0 23.0 99.0 0.0 . 61 . . Atlas-SNP OSBPL7 114881 hgsc.bcm.edu hg19 17 45897358 45897358 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 OSBPL7,NS,carcinoma,0,1 OSBPL7 NM_145798 exon3 c.G180T p.W60C CAGAGGCCACTTC . 38.0 20.0 30.0 0.0 . 65 . . Atlas-SNP DLX4 1748 hgsc.bcm.edu hg19 17 48050405 48050405 + Silent SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DLX4 NM_001934 exon1 c.C36A p.L12L CCTCCTCGCCCCC . 292.0 113.0 283.0 0.0 . 25 . . Atlas-SNP PPM1E 22843 hgsc.bcm.edu hg19 17 57057829 57057829 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PPM1E NM_014906 exon7 c.T1705A p.Y569N CCAGGCTACCTAG . 119.0 47.0 133.0 0.0 . 97 . . Atlas-SNP ABCA5 23461 hgsc.bcm.edu hg19 17 67283767 67283767 + Silent SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ABCA5 NM_018672 exon14 c.T2028A p.A676A AATGTCAGCTTCA . 106.0 19.0 87.0 0.0 . 162 . . Atlas-SNP AZI1 22994 hgsc.bcm.edu hg19 17 79193699 79193699 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . AZI1 NM_014984 exon2 c.A158T p.E53V TTCTGCTCGCTGC . 92.0 18.0 93.0 0.0 . 145 . . Atlas-SNP SMCHD1 23347 hgsc.bcm.edu hg19 18 2732311 2732311 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SMCHD1 NM_015295 exon25 c.A3097T p.S1033C CTTCCCAGTAGCC . 176.0 80.0 194.0 0.0 . 88 . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 7949192 7949192 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 PTPRM,NS,carcinoma,0,1 PTPRM NM_001105244 exon6 c.G677A p.R226Q ATGTGCGAGATGC . 54.0 11.0 72.0 0.0 . 185 . . Atlas-SNP IMPA2 3613 hgsc.bcm.edu hg19 18 12028869 12028869 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . IMPA2 NM_014214 exon7 c.G628T p.A210S ACATTGGCACTCT . 58.0 23.0 61.0 0.0 . 27 . . Atlas-SNP B4GALT6 9331 hgsc.bcm.edu hg19 18 29264373 29264373 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . B4GALT6 NM_004775 exon1 c.G17A p.R6Q ATCATCCGCCTGA . 58.0 11.0 72.0 0.0 . 44 . . Atlas-SNP PIAS2 9063 hgsc.bcm.edu hg19 18 44408008 44408008 + Silent SNP T T G rs373537803 alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PIAS2 NM_173206 exon11 c.A1422C p.I474I GCTTTCTATTGTA . 71.0 33.0 97.0 0.0 . 85 . . Atlas-SNP CDH20 28316 hgsc.bcm.edu hg19 18 59158023 59158023 + Silent SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CDH20 NM_031891 exon1 c.T237C p.Y79Y TTTGTATGTCGGC . 112.0 47.0 131.0 0.0 . 117 . . Atlas-SNP SERPINB3 6317 hgsc.bcm.edu hg19 18 61325773 61325773 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SERPINB3 NM_006919 exon5 c.A443G p.N148S CAGGAGTTAATCT . 113.0 22.0 106.0 0.0 . 90 . . Atlas-SNP GRIN3B 116444 hgsc.bcm.edu hg19 19 1005395 1005395 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GRIN3B NM_138690 exon3 c.T1895A p.V632E GCACCGTGTCCAG . 97.0 70.0 128.0 0.0 . 46 . . Atlas-SNP TMEM259 91304 hgsc.bcm.edu hg19 19 1014293 1014293 + Silent SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . . NM_033420 exon2 c.G405C p.G135G GAAGCTCCCGCGG . 100.0 33.0 132.0 0.0 . . . . Atlas-SNP ATP8B3 148229 hgsc.bcm.edu hg19 19 1796124 1796124 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ATP8B3 NM_138813 exon17 c.C1894A p.L632M TGGCCAGGACCTG . 75.0 36.0 94.0 0.0 . 108 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9071656 9071656 + Missense_Mutation SNP A A C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MUC16 NM_024690 exon3 c.T15790G p.S5264A CTGCAGATTTTGT . 50.0 22.0 95.0 0.0 . 4315 . . Atlas-SNP S1PR5 53637 hgsc.bcm.edu hg19 19 10624601 10624601 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . S1PR5 NM_030760 exon2 c.T1087A p.S363T GCTCCGAGCCGCT . 18.0 15.0 46.0 0.0 . 33 . . Atlas-SNP RTBDN 83546 hgsc.bcm.edu hg19 19 12936625 12936625 + Silent SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RTBDN NM_031429 exon7 c.A681T p.G227G CCGTCGTCCTGGT . 105.0 89.0 156.0 0.0 . 26 . . Atlas-SNP OR7C2 26658 hgsc.bcm.edu hg19 19 15052983 15052983 + Missense_Mutation SNP T T C rs78307433 TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OR7C2 NM_012377 exon1 c.T683C p.V228A TAAGAGTATCTGC . 1064.0 44.0 101.0 0.0 . 50 . . Atlas-SNP FCHO1 23149 hgsc.bcm.edu hg19 19 17886926 17886926 + Missense_Mutation SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . FCHO1 NM_001161358 exon15 c.C1138A p.L380I GCACAGCTCAGGG . 34.0 32.0 45.0 0.0 . 69 . . Atlas-SNP ZNF486 90649 hgsc.bcm.edu hg19 19 20308783 20308783 + Missense_Mutation SNP A A G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZNF486 NM_052852 exon4 c.A1264G p.T422A AATCTAACTGAAC . 71.0 28.0 113.0 0.0 . 74 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36214899 36214899 + Nonsense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MLL4 NM_014727 exon8 c.C3325T p.R1109X ACCCCCCGAGAAA . 137.0 21.0 72.0 0.0 . 229 . . Atlas-SNP SIPA1L3 23094 hgsc.bcm.edu hg19 19 38572737 38572737 + Missense_Mutation SNP G G A rs377070862 TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SIPA1L3 NM_015073 exon3 c.G532A p.E178K CTCAGCGAGTGTG . 58.0 11.0 37.0 0.0 . 150 . . Atlas-SNP ACTN4 81 hgsc.bcm.edu hg19 19 39207845 39207845 + Silent SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ACTN4 NM_004924 exon10 c.G1032A p.P344P CAAGCCGCCCAAG . 176.0 14.0 101.0 0.0 . 69 . . Atlas-SNP CEACAM7 1087 hgsc.bcm.edu hg19 19 42187899 42187899 + Missense_Mutation SNP T T A rs201378485 by1000genomes;alternate_allele TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . CEACAM7 NM_006890 exon3 c.A523T p.T175S AGGTTGTGTTCTG . 130.0 86.0 91.0 0.0 . 33 . T|1.000;C|0.000 Atlas-SNP KCNN4 3783 hgsc.bcm.edu hg19 19 44271859 44271859 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KCNN4 NM_002250 exon8 c.A1120G p.M374V TGTGCATCTGGGT . 82.0 49.0 69.0 0.0 . 37 . . Atlas-SNP PTGIR 5739 hgsc.bcm.edu hg19 19 47127137 47127137 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PTGIR NM_000960 exon2 c.G346A p.E116K AGCGCTCCACGGC . 98.0 20.0 57.0 0.0 . 31 . . Atlas-SNP ZNF808 388558 hgsc.bcm.edu hg19 19 53056843 53056843 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZNF808 NM_001039886 exon5 c.A674T p.H225L AAGTACACATGAG . 153.0 98.0 70.0 0.0 . 81 . . Atlas-SNP BIRC8 112401 hgsc.bcm.edu hg19 19 53793422 53793422 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . BIRC8 NM_033341 exon1 c.T206A p.L69Q TCTAGCAGATATT . 196.0 124.0 132.0 0.0 . 54 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55493848 55493848 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . NLRP2 NM_017852 exon6 c.T782A p.L261Q CAGAGCTGGTCTT . 177.0 48.0 123.0 0.0 . 161 . . Atlas-SNP ZNF256 10172 hgsc.bcm.edu hg19 19 58453484 58453484 + Missense_Mutation SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZNF256 NM_005773 exon3 c.G692C p.G231A AGGTCTCCCTGGT . 201.0 25.0 106.0 0.0 . 117 . . Atlas-SNP TASP1 55617 hgsc.bcm.edu hg19 20 13550171 13550171 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TASP1 NM_017714 exon7 c.C551A p.P184H ATGTTAGGAGGGC . 44.0 30.0 43.0 0.0 . 52 . . Atlas-SNP GZF1 64412 hgsc.bcm.edu hg19 20 23350846 23350846 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GZF1 NM_022482 exon5 c.C1904T p.S635L AGCTTTCGGATAA . 119.0 13.0 177.0 0.0 . 61 . . Atlas-SNP C20orf112 140688 hgsc.bcm.edu hg19 20 31043960 31043960 + Silent SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . C20orf112 NM_001256798 exon6 c.G1080A p.L360L GCTCCGCAGCCCG . 48.0 12.0 56.0 0.0 . 39 . . Atlas-SNP RBPJL 11317 hgsc.bcm.edu hg19 20 43942173 43942173 + Missense_Mutation SNP C C T rs370206478 TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . RBPJL NM_014276 exon7 c.C685T p.R229C TCCACACGCTACC . 65.0 47.0 59.0 0.0 . 67 . . Atlas-SNP PREX1 57580 hgsc.bcm.edu hg19 20 47273608 47273608 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PREX1 NM_020820 exon18 c.T2093A p.L698Q AGGCGCAGAGGGC . 45.0 13.0 36.0 0.0 . 441 . . Atlas-SNP PREX1 57580 hgsc.bcm.edu hg19 20 47444283 47444283 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PREX1 NM_020820 exon1 c.G115A p.A39T GGGCGGCCGCGCA . 62.0 16.0 70.0 0.0 . 441 . . Atlas-SNP ZFP64 55734 hgsc.bcm.edu hg19 20 50782528 50782528 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZFP64 NM_018197 exon3 c.A323T p.Q108L TAAGTTTGATAGC . 94.0 66.0 107.0 0.0 . 240 . . Atlas-SNP PHACTR3 116154 hgsc.bcm.edu hg19 20 58318246 58318246 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PHACTR3 NM_080672 exon2 c.T203A p.L68Q GCAAACTGGCCAC . 154.0 107.0 194.0 0.0 . 104 . . Atlas-SNP PSMA7 5688 hgsc.bcm.edu hg19 20 60713291 60713291 + Missense_Mutation SNP T T C novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PSMA7 NM_002792 exon5 c.A527G p.Y176C TCAGTATAGTTCT . 138.0 95.0 143.0 0.0 . 13 . . Atlas-SNP GATA5 140628 hgsc.bcm.edu hg19 20 61040413 61040413 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . GATA5 NM_080473 exon6 c.C1021A p.P341T TGCTGGGCCCAGG . 13.0 8.0 8.0 0.0 . 22 . . Atlas-SNP ITGB2 3689 hgsc.bcm.edu hg19 21 46308698 46308698 + Missense_Mutation SNP C C G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ITGB2 NM_000211 exon14 c.G1990C p.E664Q CCCTCTCCTTGCA . 34.0 23.0 37.0 0.0 . 107 . . Atlas-SNP PCBP3 54039 hgsc.bcm.edu hg19 21 47333904 47333904 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PCBP3 NM_020528 exon8 c.C640T p.P214S CCAAAGCCCGCCT . 26.0 11.0 33.0 0.0 . 82 . . Atlas-SNP P2RX6 9127 hgsc.bcm.edu hg19 22 21377002 21377002 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . . NM_005446 exon4 c.A425T p.E142V TCGACGAGGACTG . 98.0 30.0 80.0 0.0 . . . . Atlas-SNP PRR14L 253143 hgsc.bcm.edu hg19 22 32108298 32108298 + Missense_Mutation SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PRR14L NM_173566 exon4 c.A5527T p.S1843C TGTGGCTGGAGAA . 158.0 78.0 142.0 0.0 . 198 . . Atlas-SNP KCNJ4 3761 hgsc.bcm.edu hg19 22 38823554 38823554 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KCNJ4 NM_004981 exon2 c.T584A p.V195E TCGCGCACCGAAA . 55.0 31.0 44.0 0.0 . 74 . . Atlas-SNP PNPLA3 80339 hgsc.bcm.edu hg19 22 44332942 44332942 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PNPLA3 NM_025225 exon6 c.A769T p.R257W TGCAACAGGCCCC . 50.0 17.0 49.0 0.0 . 53 . . Atlas-SNP PRR5-ARHGAP8 553158 hgsc.bcm.edu hg19 22 45210622 45210622 + Missense_Mutation SNP T T G novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PRR5-ARHGAP8 NM_181334 exon8 c.T736G p.L246V AACATCTTGAAGC . 88.0 21.0 79.0 0.0 . 53 . . Atlas-SNP MBTPS2 51360 hgsc.bcm.edu hg19 X 21887622 21887622 + Missense_Mutation SNP C C T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MBTPS2 NM_015884 exon7 c.C796T p.P266S GACTCTCCTGCCA . 69.0 64.0 60.0 0.0 . 52 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32429921 32429921 + Missense_Mutation SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . DMD NM_004006 exon30 c.C4181A p.A1394E TAAGCTGCCAACT . 60.0 60.0 54.0 0.0 . 2127 . . Atlas-SNP BCOR 54880 hgsc.bcm.edu hg19 X 39932115 39932115 + Silent SNP T T A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . BCOR NM_001123385 exon4 c.A2484T p.A828A ACTCTCTGCTGCA . 44.0 39.0 63.0 0.0 . 351 . . Atlas-SNP MAOA 4128 hgsc.bcm.edu hg19 X 43603116 43603116 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MAOA NM_000240 exon13 c.A1338T p.E446D CATGGAAGGGGCA . 34.0 31.0 43.0 0.0 . 48 . . Atlas-SNP PRAF2 11230 hgsc.bcm.edu hg19 X 48931536 48931536 + Silent SNP G G T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PRAF2 NM_007213 exon1 c.C111A p.V37V GTTGATGACGCGG . 41.0 34.0 25.0 0.0 . 14 . . Atlas-SNP OPHN1 4983 hgsc.bcm.edu hg19 X 67293091 67293091 + Silent SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . OPHN1 NM_002547 exon20 c.T1737A p.P579P CACCCGAGGCGGA . 98.0 91.0 97.0 0.0 . 75 . . Atlas-SNP IL13RA2 3598 hgsc.bcm.edu hg19 X 114249118 114249118 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . IL13RA2 NM_000640 exon4 c.T266A p.L89Q TAATGTAGATTCT . 43.0 40.0 54.0 0.0 . 66 . . Atlas-SNP KIAA1210 57481 hgsc.bcm.edu hg19 X 118223434 118223434 + Missense_Mutation SNP A A T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . KIAA1210 NM_020721 exon11 c.T1759A p.L587M AGGACAAGTGCGA . 42.0 40.0 42.0 0.0 . 171 . . Atlas-SNP MAGEC1 9947 hgsc.bcm.edu hg19 X 140994576 140994576 + Silent SNP C C A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . MAGEC1 NM_005462 exon4 c.C1386A p.S462S GAGTTCCCCTGAG . 121.0 12.0 123.0 0.0 . 317 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 12736 12736 + Missense_Mutation SNP G G A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . . ENST00000361567 exon1 c.G400A p.A134T GTTACCGCTAACA . 388.0 29.0 24.0 0.0 . . . . Atlas-SNP TAS2R9 50835 hgsc.bcm.edu hg19 12 10962090 10962091 + Frame_Shift_Ins INS - - A novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TAS2R9 NM_023917 exon1 c.585_586insT p.L195fs . . 168.0 27.0 132.0 0.0 . 39 . . Atlas-Indel,Pindel ZBTB20 26137 hgsc.bcm.edu hg19 3 114058003 114058003 + Frame_Shift_Del DEL G G - novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . ZBTB20 NM_001164342 exon5 c.2076delT p.P692fs . . 70.0 22.0 70.0 0.0 . 157 . . Atlas-Indel,Pindel DHX16 8449 hgsc.bcm.edu hg19 6 30621047 30621048 + Frame_Shift_Ins INS - - T novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 .,1 DHX16 NM_003587 exon20 c.3098_3099insA p.I1033fs . . 165.0 82.0 100.0 0.0 . 119 . . Atlas-Indel,Pindel TP53 7157 hgsc.bcm.edu hg19 17 7577531 7577538 + Frame_Shift_Del DEL GGGCCTCC GGGCCTCC - novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 GGGCCTCC GGGCCTCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 TP53_ENST00000455263,NS,malignant_melanoma,+1,4 TP53 NM_001126112 exon7 c.744_751del p.248_251del . . 24.0 18.0 77.0 0.0 . 33396 . . Atlas-Indel,Pindel PRR12 57479 hgsc.bcm.edu hg19 19 50102990 50102992 + In_Frame_Del DEL CTC CTC - novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 CTC CTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . PRR12 NM_020719 exon5 c.4139_4141del p.1380_1381del . . 126.0 23.0 86.0 0.0 . 157 . . Atlas-Indel,Pindel TMX2 51075 hgsc.bcm.edu hg19 11 57505430 57505441 + In_Frame_Del DEL TGGCCAACACAA TGGCCAACACAA - novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 TGGCCAACACAA TGGCCAACACAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . TMX2 NM_015959 exon3 c.295_306del p.99_102del . . 82.0 22.0 160.0 0.0 . 29 . . Atlas-Indel,Pindel SLC10A1 6554 hgsc.bcm.edu hg19 14 70263762 70263764 + In_Frame_Del DEL GAA GAA - novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 GAA GAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . SLC10A1 NM_003049 exon1 c.110_112del p.37_38del . . 88.0 43.0 114.0 0.0 . 32 . . Atlas-Indel,Pindel LCORL 254251 hgsc.bcm.edu hg19 4 18023321 18023322 + In_Frame_Ins INS - - GCGGCGGCAGCA novel TCGA-ED-A7PZ-01A-11D-A33Q-10 TCGA-ED-A7PZ-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9271fe2-2c4b-4513-8eac-853a1acc9568 84111421-4619-45db-918a-9570d676c285 . LCORL NM_001166139 exon1 c.54_55insTGCTGCCGCCGC p.A18delinsAAAAA . . 72.0 15.0 47.0 0.0 . 60 . . Atlas-INDEL