Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CEP104	9731	hgsc.bcm.edu	hg19	1	3753156	3753156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CEP104	NM_014704	exon10	c.A1220G	p.D407G	CGAGCATCGCTGA	.	37.0	10.0	39.0	0.0	.	79	.	.	Atlas-SNP
GUCA2B	2981	hgsc.bcm.edu	hg19	1	42620502	42620502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	GUCA2B	NM_007102	exon2	c.C242T	p.A81V	TCTGCGCCTCGCA	.	123.0	85.0	112.0	0.0	.	9	.	.	Atlas-SNP
TOR1AIP2	163590	hgsc.bcm.edu	hg19	1	179815558	179815558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TOR1AIP2	NM_001199260	exon7	c.G1061A	p.G354E	TCAAACCCATAGC	.	80.0	32.0	51.0	0.0	.	38	.	.	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196274416	196274416	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KCNT2	NM_198503	exon22	c.T2543G	p.M848R	AATTGCATGAATC	.	167.0	58.0	113.0	0.0	.	243	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21249795	21249795	+	Silent	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	APOB	NM_000384	exon15	c.T2109C	p.A703A	AAAAAGAGCTTCC	.	150.0	78.0	212.0	0.0	.	761	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61430400	61430400	+	Splice_Site	SNP	T	T	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	USP34	NM_014709	exon76	c.9385-2A>C	.	TTGCCCTGAAGGT	.	55.0	35.0	57.0	0.0	.	334	.	.	Atlas-SNP
MPHOSPH10	10199	hgsc.bcm.edu	hg19	2	71360572	71360572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MPHOSPH10	NM_005791	exon2	c.G634T	p.A212S	ATGGAGGCCTATT	.	161.0	91.0	278.0	0.0	.	81	.	.	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	hg19	2	167149749	167149749	+	Missense_Mutation	SNP	A	A	T	rs200457046	alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SCN9A	NM_002977	exon9	c.T1099A	p.Y367N	GTTGGTAAAGGTT	.	85.0	30.0	96.0	0.0	.	296	.	.	Atlas-SNP
ARPC2	10109	hgsc.bcm.edu	hg19	2	219114171	219114171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ARPC2	NM_005731	exon8	c.A761G	p.H254R	ACTACCACATCAA	.	45.0	18.0	55.0	0.0	.	25	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230657707	230657707	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TRIP12	NM_004238	exon26	c.A3898T	p.R1300X	GGTATCTCTCGAT	.	68.0	40.0	90.0	0.0	.	207	.	.	Atlas-SNP
TOP2B	7155	hgsc.bcm.edu	hg19	3	25654029	25654029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TOP2B	NM_001068	exon28	c.A3748G	p.K1250E	ACTTTTTGCTGGC	.	48.0	28.0	43.0	0.0	.	98	.	.	Atlas-SNP
HEMK1	51409	hgsc.bcm.edu	hg19	3	50609148	50609148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	HEMK1	NM_016173	exon3	c.G236A	p.S79N	TTCAGAGCCTGAG	.	56.0	33.0	77.0	0.0	.	17	.	.	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52415808	52415808	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DNAH1	NM_015512	exon49	c.G7761T	p.V2587V	GGGCGTGGGTGGC	.	78.0	23.0	112.0	0.0	.	534	.	.	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52415809	52415809	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DNAH1	NM_015512	exon49	c.G7762C	p.G2588R	GGCGTGGGTGGCA	.	78.0	24.0	110.0	0.0	.	534	.	.	Atlas-SNP
PHF7	51533	hgsc.bcm.edu	hg19	3	52448577	52448577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PHF7	NM_016483	exon4	c.A160G	p.N54D	AAAGACAATATCA	.	85.0	45.0	105.0	0.0	.	29	.	.	Atlas-SNP
NXPE3	91775	hgsc.bcm.edu	hg19	3	101520122	101520122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	NM_145037	exon5	c.G137A	p.S46N	ACAGCAGTGGACA	.	180.0	51.0	229.0	0.0	.	.	.	.	Atlas-SNP
ARHGAP31	57514	hgsc.bcm.edu	hg19	3	119134792	119134792	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ARHGAP31	NM_020754	exon12	c.C4016A	p.S1339X	ACAGGTCAAGGCC	.	85.0	31.0	98.0	0.0	.	175	.	.	Atlas-SNP
MME	4311	hgsc.bcm.edu	hg19	3	154860094	154860094	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MME	NM_007287	exon12	c.A1163T	p.K388M	CCTACAAGGAGTC	.	96.0	26.0	129.0	0.0	.	133	.	.	Atlas-SNP
PAK2	5062	hgsc.bcm.edu	hg19	3	196509562	196509562	+	Silent	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PAK2	NM_002577	exon2	c.T45C	p.P15P	ACCTCCTGTGCGA	.	200.0	9.0	212.0	0.0	.	113	.	.	Atlas-SNP
COPS4	51138	hgsc.bcm.edu	hg19	4	83984336	83984336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	COPS4	NM_016129	exon7	c.G823A	p.G275R	ATCAGAGGAAATC	.	99.0	53.0	130.0	0.0	.	31	.	.	Atlas-SNP
KLHL2	11275	hgsc.bcm.edu	hg19	4	166238988	166238988	+	Silent	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KLHL2	NM_001161521	exon14	c.A1632G	p.A544A	TTGTGCAGTTAAT	.	95.0	33.0	134.0	0.0	.	42	.	.	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	hg19	5	14270940	14270940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TRIO	NM_007118	exon2	c.G164A	p.R55Q	GGTTTCGAAAAAA	.	70.0	43.0	85.0	0.0	.	305	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71493321	71493321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MAP1B	NM_005909	exon5	c.T4139A	p.M1380K	GCCCCATGGATGA	.	134.0	50.0	108.0	0.0	.	243	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128887587	128887587	+	Silent	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ADAMTS19	NM_133638	exon7	c.A1341C	p.P447P	TGAACCATGTGAT	.	105.0	36.0	76.0	0.0	.	216	.	.	Atlas-SNP
IL4	3565	hgsc.bcm.edu	hg19	5	132009824	132009824	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	IL4	NM_172348	exon1	c.G82C	p.D28H	AAGTGCGATATCA	.	66.0	30.0	63.0	0.0	.	14	.	.	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	hg19	5	140262349	140262349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PCDHA13	NM_031865	exon1	c.T496A	p.S166T	GTAAACTCGGCAT	.	139.0	70.0	144.0	0.0	.	213	.	.	Atlas-SNP
PCDHGA10	56106	hgsc.bcm.edu	hg19	5	140794859	140794859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PCDHGA10	NM_032090	exon1	c.G2117T	p.C706F	TCTCCTGCGTCTT	.	113.0	57.0	113.0	0.0	.	114	.	.	Atlas-SNP
DBN1	1627	hgsc.bcm.edu	hg19	5	176899177	176899177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DBN1	NM_080881	exon2	c.T35C	p.L12P	CTGGCCAGTGCTG	.	103.0	48.0	112.0	0.0	.	122	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38838323	38838323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DNAH8	NM_001206927	exon49	c.C6975A	p.N2325K	CTGGAACCTGAAA	.	56.0	36.0	48.0	0.0	.	1239	.	.	Atlas-SNP
KIAA1586	57691	hgsc.bcm.edu	hg19	6	56918222	56918222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KIAA1586	NM_020931	exon4	c.G925A	p.E309K	ATTATAGAAGAGA	.	78.0	44.0	127.0	0.0	.	59	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65767551	65767551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	EYS	NM_001142800	exon13	c.A2093G	p.D698G	GGTTGGTCAATGC	.	241.0	150.0	257.0	0.0	.	527	.	.	Atlas-SNP
POPDC3	64208	hgsc.bcm.edu	hg19	6	105606476	105606476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	POPDC3	NM_022361	exon4	c.A745G	p.R249G	ATACCCTGTCATT	.	138.0	83.0	156.0	0.0	.	47	.	.	Atlas-SNP
L3MBTL3	84456	hgsc.bcm.edu	hg19	6	130381199	130381199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	L3MBTL3	NM_032438	exon10	c.A778T	p.N260Y	CCATATAACAAAA	.	96.0	24.0	135.0	0.0	.	99	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20785063	20785063	+	Splice_Site	SNP	T	T	A	rs373651350	alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ABCB5	NM_001163941	exon26	c.3429+2T>A	.	CTGAGGTAAGAAA	.	72.0	37.0	64.0	0.0	.	357	.	.	Atlas-SNP
HNRNPA2B1	3181	hgsc.bcm.edu	hg19	7	26233251	26233251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	HNRNPA2B1	NM_031243	exon9	c.C821A	p.P274H	TATCCAGGTCCTC	.	82.0	5.0	78.0	0.0	.	70	.	.	Atlas-SNP
PDE1C	5137	hgsc.bcm.edu	hg19	7	31918700	31918700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	PDE1C_ENST00000396193,NS,carcinoma,0,3	PDE1C	NM_001191058	exon5	c.C514T	p.R172W	TCTGCCGCGTGAA	.	50.0	23.0	42.0	0.0	.	465	.	.	Atlas-SNP
CDHR3	222256	hgsc.bcm.edu	hg19	7	105662822	105662822	+	Silent	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CDHR3	NM_152750	exon14	c.T2004C	p.V668V	TCTTGTTGAGACA	.	189.0	87.0	203.0	0.0	.	153	.	.	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	hg19	8	36788612	36788612	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KCNU1	NM_001031836	exon25	c.G2880T	p.R960R	AAACCGGTGTAAG	.	149.0	63.0	146.0	0.0	.	359	.	.	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5968170	5968170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KIAA2026	NM_001017969	exon3	c.G2061T	p.K687N	TTTTTTCTTTTTC	.	76.0	37.0	89.0	0.0	.	231	.	.	Atlas-SNP
TRMT10B	158234	hgsc.bcm.edu	hg19	9	37762014	37762014	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	NM_144964	exon2	c.A86C	p.E29A	CAGGTGAAGATGG	.	139.0	62.0	145.0	0.0	.	.	.	.	Atlas-SNP
ACTL7A	10881	hgsc.bcm.edu	hg19	9	111625276	111625276	+	Missense_Mutation	SNP	A	A	G	rs112558776	alternate_allele	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ACTL7A	NM_006687	exon1	c.A674G	p.Y225C	TGTCCTACGTGGT	.	47.0	18.0	44.0	0.0	.	34	.	A|0.500;C|0.500	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29812533	29812533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SVIL	NM_021738	exon15	c.G3010A	p.A1004T	GGTTCGCCCGTTC	.	98.0	52.0	109.0	0.0	.	226	.	.	Atlas-SNP
FGFR2	2263	hgsc.bcm.edu	hg19	10	123276885	123276885	+	Silent	SNP	C	C	T	rs121918491		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	FGFR2	NM_000141	exon8	c.G1032A	p.A344A	ATTACCCGCCAAG	.	46.0	41.0	78.0	0.0	.	758	.	.	Atlas-SNP
CD6	923	hgsc.bcm.edu	hg19	11	60774061	60774061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CD6	NM_006725	exon2	c.C65T	p.A22V	CTCCAGCCCCACC	.	36.0	13.0	45.0	0.0	.	122	.	.	Atlas-SNP
SCGB2A2	4250	hgsc.bcm.edu	hg19	11	62038372	62038372	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SCGB2A2	NM_002411	exon2	c.G75A	p.L25L	CTTATTGGAGAAT	.	90.0	38.0	62.0	0.0	.	13	.	.	Atlas-SNP
LRTM2	654429	hgsc.bcm.edu	hg19	12	1943454	1943454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	LRTM2	NM_001039029	exon5	c.C680T	p.A227V	AGCTTGCCTGCAC	.	31.0	16.0	27.0	0.0	.	43	.	.	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19436617	19436617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	PLEKHA5	NM_001256470	exon12	c.T1717C	p.S573P	GAAGTGTCTTCAC	.	78.0	33.0	73.0	0.0	.	198	.	.	Atlas-SNP
SUOX	6821	hgsc.bcm.edu	hg19	12	56397423	56397423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SUOX	NM_000456	exon6	c.A250G	p.I84V	ACACACATATACA	.	71.0	25.0	97.0	0.0	.	33	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85521764	85521764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	LRRIQ1	NM_001079910	exon18	c.A4162G	p.I1388V	GAAAATATTGTGA	.	285.0	137.0	249.0	0.0	.	512	.	.	Atlas-SNP
HSPH1	10808	hgsc.bcm.edu	hg19	13	31715296	31715296	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	HSPH1	NM_006644	exon13	c.T1817G	p.L606X	TTCCCTAACTGCC	.	106.0	52.0	96.0	0.0	.	65	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35806707	35806707	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NBEA	NM_015678	exon34	c.C5727T	p.F1909F	CCCATTCCTATCT	.	145.0	67.0	123.0	0.0	.	340	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	48951053	48951053	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	RB1,NS,carcinoma,0,1	RB1	NM_000321	exon13	c.1216-1G>A	.	CCTAAAGAACTGC	.	62.0	54.0	105.0	0.0	.	1068	.	.	Atlas-SNP
SLITRK6	84189	hgsc.bcm.edu	hg19	13	86370519	86370519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SLITRK6	NM_032229	exon2	c.G125C	p.G42A	ATTGTGCCATCTT	.	74.0	61.0	131.0	0.0	.	150	.	.	Atlas-SNP
RNASE1	6035	hgsc.bcm.edu	hg19	14	21270068	21270068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RNASE1	NM_198235	exon3	c.T160C	p.C54R	GGTTACAGTAGGT	.	52.0	22.0	49.0	0.0	.	14	.	.	Atlas-SNP
GPHN	10243	hgsc.bcm.edu	hg19	14	67147861	67147861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	GPHN_ENST00000478722,colon,carcinoma,0,1	GPHN	NM_001024218	exon2	c.G101A	p.R34H	AAGACCGCAGTGG	.	92.0	47.0	93.0	0.0	.	79	.	.	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	hg19	15	29429365	29429365	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	FAM189A1	NM_015307	exon6	c.C663T	p.P221P	GCAGGTGGGGTTG	.	44.0	29.0	54.0	0.0	.	20	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	42052603	42052603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MGA	NM_001164273	exon20	c.G7274A	p.R2425H	ATTATCGCCGGAC	.	121.0	77.0	129.0	0.0	.	264	.	.	Atlas-SNP
MMP15	4324	hgsc.bcm.edu	hg19	16	58074513	58074513	+	Missense_Mutation	SNP	A	A	G	rs147717123	bycluster	TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	MMP15	NM_002428	exon5	c.A821G	p.N274S	ACCCCAATGCCAT	.	32.0	24.0	71.0	0.0	.	58	.	A|1.000;G|0.000	Atlas-SNP
CHD3	1107	hgsc.bcm.edu	hg19	17	7798720	7798720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CHD3	NM_001005271	exon10	c.G1744A	p.A582T	CCTGTAGCAGTGC	.	61.0	32.0	88.0	0.0	.	169	.	.	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	hg19	17	39595474	39595474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	KRT38	NM_006771	exon3	c.T713A	p.L238H	CTCTTGAGGGAGA	.	28.0	12.0	55.0	0.0	.	63	.	.	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	hg19	18	5419718	5419718	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	EPB41L3,lower_third,carcinoma,0,1	EPB41L3	NM_012307	exon12	c.G1498T	p.E500X	TTCCCTCGTGCCG	.	39.0	23.0	42.0	0.0	.	222	.	.	Atlas-SNP
CDC37	11140	hgsc.bcm.edu	hg19	19	10506763	10506763	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CDC37	NM_007065	exon2	c.G219A	p.V73V	CTCGGCCACCTCC	.	95.0	31.0	87.0	0.0	.	32	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11132515	11132515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SMARCA4	NM_003072	exon19	c.G2731A	p.G911S	CTGACGGGCACAC	.	58.0	20.0	51.0	0.0	.	502	.	.	Atlas-SNP
ELAVL3	1995	hgsc.bcm.edu	hg19	19	11577461	11577461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ELAVL3	NM_032281	exon2	c.A191G	p.D64G	TCGATGTCGCCAA	.	87.0	44.0	67.0	0.0	.	58	.	.	Atlas-SNP
OR10H4	126541	hgsc.bcm.edu	hg19	19	16059854	16059854	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	OR10H4	NM_001004465	exon1	c.A37T	p.N13Y	GAATTTAACCTCT	.	82.0	38.0	73.0	0.0	.	48	.	.	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	hg19	19	17091417	17091417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	CPAMD8,right_lower_lobe,carcinoma,0,1	CPAMD8	NM_015692	exon14	c.G1616A	p.G539D	ATATTGCCCCGTG	.	89.0	40.0	89.0	0.0	.	192	.	.	Atlas-SNP
ZNF30	90075	hgsc.bcm.edu	hg19	19	35435350	35435350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ZNF30	NM_001099438	exon5	c.A1483G	p.S495G	ACTTTTAGTCGAG	.	64.0	31.0	79.0	0.0	.	44	.	.	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	hg19	19	56223263	56223263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NLRP9	NM_176820	exon8	c.A2746T	p.R916W	GGCTCCTCAGTGT	.	80.0	47.0	69.0	0.0	.	163	.	.	Atlas-SNP
CTNNBL1	56259	hgsc.bcm.edu	hg19	20	36431330	36431330	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	CTNNBL1	NM_030877	exon11	c.G1093T	p.E365X	GGCCCCGAAGGCA	.	150.0	68.0	154.0	0.0	.	78	.	.	Atlas-SNP
DONSON	29980	hgsc.bcm.edu	hg19	21	34958454	34958454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	DONSON	NM_017613	exon3	c.C436A	p.P146T	AGGACGGAATATC	.	126.0	40.0	208.0	0.0	.	34	.	.	Atlas-SNP
MORC2	22880	hgsc.bcm.edu	hg19	22	31332568	31332568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	MORC2,NS,neuroblastoma,0,1	MORC2	NM_014941	exon18	c.C1481A	p.T494K	TCCTGCGTCTTCA	.	51.0	3.0	60.0	0.0	.	78	.	.	Atlas-SNP
GRAMD4	23151	hgsc.bcm.edu	hg19	22	47033858	47033858	+	Splice_Site	SNP	G	G	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	GRAMD4	NM_015124	exon2	c.283+1G>C	.	TCTTACGTGAGTA	.	81.0	7.0	114.0	0.0	.	53	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20181160	20181160	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RPS6KA3	NM_004586	exon20	c.1765-2A>T	.	AAAACCTAGAAAA	.	213.0	108.0	208.0	0.0	.	110	.	.	Atlas-SNP
TFE3	7030	hgsc.bcm.edu	hg19	X	48888982	48888982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	TFE3	NM_006521	exon9	c.G1214A	p.R405H	TTGGAGCGCTGCT	.	75.0	41.0	80.0	0.0	.	93	.	.	Atlas-SNP
NOX1	27035	hgsc.bcm.edu	hg19	X	100104411	100104411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	NOX1	NM_007052	exon11	c.A1301G	p.Y434C	TAGAAATAGATCT	.	130.0	57.0	129.0	0.0	.	79	.	.	Atlas-SNP
RAB33A	9363	hgsc.bcm.edu	hg19	X	129306277	129306277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RAB33A	NM_004794	exon1	c.G241T	p.E81X	GAAATCGAGGGCG	.	48.0	17.0	61.0	0.0	.	24	.	.	Atlas-SNP
ZBTB14	7541	hgsc.bcm.edu	hg19	18	5290910	5290910	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	.	NM_001243702	exon4	c.1298delC	p.A433fs	.	.	48.0	23.0	74.0	0.0	.	.	.	.	Atlas-Indel,Pindel
RORB	6096	hgsc.bcm.edu	hg19	9	77286750	77286752	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	RORB	NM_006914	exon9	c.1156_1158del	p.386_386del	.	.	288.0	120.0	247.0	0.0	.	89	.	.	Atlas-Indel,Pindel
ASAH1	427	hgsc.bcm.edu	hg19	8	17921966	17921967	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	ASAH1	NM_004315	exon6	c.505_506insA	p.G169fs	.	.	45.0	18.0	68.0	0.0	.	71	.	.	Atlas-Indel,Pindel
SUPT16H	11198	hgsc.bcm.edu	hg19	14	21828639	21828644	+	In_Frame_Del	DEL	TATTAT	TATTAT	-	novel		TCGA-ED-A66Y-01A-11D-A30V-10	TCGA-ED-A66Y-10A-01D-A30V-10	TATTAT	TATTAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	934fcec3-38d8-46e9-b760-15fc041e8284	88b29a81-2646-4944-88a9-6dc6dd70aaa7	.	SUPT16H	NM_007192	exon18	c.2106_2111del	p.702_704del	.	.	230.0	48.0	230.0	0.0	.	84	.	.	Pindel