Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ZMYND12 84217 hgsc.bcm.edu hg19 1 42921631 42921631 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ZMYND12 NM_032257 exon1 c.G38A p.R13H AGTCTGCGCCCCT . 56.0 10.0 52.0 0.0 . 35 . . Atlas-SNP MIER1 57708 hgsc.bcm.edu hg19 1 67436525 67436525 + Silent SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MIER1 NM_001077700 exon9 c.T807C p.P269P GGACCCTGAGTAC . 126.0 11.0 118.0 0.0 . 86 . . Atlas-SNP GBP2 2634 hgsc.bcm.edu hg19 1 89578243 89578243 + Missense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . GBP2 NM_004120 exon8 c.T1274A p.F425Y TTAGAAAATGTTC . 193.0 25.0 233.0 0.0 . 58 . . Atlas-SNP HFM1 164045 hgsc.bcm.edu hg19 1 91784929 91784929 + Silent SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . HFM1 NM_001017975 exon24 c.A2601G p.L867L GCATCCTAGTTGA . 88.0 14.0 111.0 0.0 . 188 . . Atlas-SNP C1orf146 388649 hgsc.bcm.edu hg19 1 92711222 92711222 + Missense_Mutation SNP C C A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . C1orf146 NM_001012425 exon6 c.C534A p.N178K AGTTAACCCAAAT . 153.0 28.0 176.0 0.0 . 21 . . Atlas-SNP PALMD 54873 hgsc.bcm.edu hg19 1 100154912 100154912 + Missense_Mutation SNP A A C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . PALMD NM_017734 exon7 c.A1096C p.K366Q TCTCCAAAGCCAA . 126.0 13.0 159.0 0.0 . 64 . . Atlas-SNP SPAG17 200162 hgsc.bcm.edu hg19 1 118548101 118548101 + Missense_Mutation SNP T T A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SPAG17 NM_206996 exon32 c.A4712T p.Y1571F ATGATGTACCTGC . 103.0 8.0 104.0 0.0 . 263 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152281931 152281931 + Missense_Mutation SNP C C A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd FLG,left_upper_lobe,carcinoma,0,1 FLG NM_002016 exon3 c.G5431T p.D1811Y TGGTGTCCTGACC . 466.0 65.0 384.0 1.0 . 900 . . Atlas-SNP SPRR2B 6701 hgsc.bcm.edu hg19 1 153043186 153043186 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SPRR2B NM_001017418 exon3 c.C130T p.P44S GGCAGGGCTGTGG . 207.0 24.0 216.0 0.0 . 15 . . Atlas-SNP OR10T2 128360 hgsc.bcm.edu hg19 1 158368778 158368778 + Missense_Mutation SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . OR10T2 NM_001004475 exon1 c.C479A p.A160D TTGGTGGCCACCA . 85.0 5.0 60.0 0.0 . 76 . . Atlas-SNP HSD17B7 51478 hgsc.bcm.edu hg19 1 162760596 162760596 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . HSD17B7 NM_016371 exon1 c.A6G p.R2R GATGCGAAAGGTG . 671.0 86.0 547.0 0.0 . 25 . . Atlas-SNP POGK 57645 hgsc.bcm.edu hg19 1 166818288 166818288 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . POGK NM_017542 exon5 c.A472G p.I158V CGGGATATCACAG . 340.0 63.0 304.0 0.0 . 54 . . Atlas-SNP KIAA0040 9674 hgsc.bcm.edu hg19 1 175129922 175129922 + Missense_Mutation SNP A A C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . KIAA0040 NM_001162895 exon3 c.T228G p.D76E TTCTTCATCCTTC . 108.0 6.0 91.0 0.0 . 2 . . Atlas-SNP KIAA0040 9674 hgsc.bcm.edu hg19 1 175129924 175129924 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . KIAA0040 NM_001162895 exon3 c.G226A p.D76N CTTCATCCTTCTT . 105.0 5.0 91.0 0.0 . 2 . . Atlas-SNP PTPRC 5788 hgsc.bcm.edu hg19 1 198682109 198682109 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . PTPRC NM_002838 exon12 c.G1199A p.C400Y TTTTTTGTAGAAG . 140.0 9.0 110.0 0.0 . 229 . . Atlas-SNP MARK1 4139 hgsc.bcm.edu hg19 1 220826560 220826560 + Silent SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MARK1 NM_018650 exon16 c.G1854A p.Q618Q TGAACAGCTCCGG . 237.0 12.0 230.0 0.0 . 161 . . Atlas-SNP OR2M5 127059 hgsc.bcm.edu hg19 1 248308834 248308834 + Missense_Mutation SNP C C G rs150844237 alternate_allele TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . OR2M5 NM_001004690 exon1 c.C385G p.P129A TGCCACCCTCTAA . 508.0 26.0 400.0 0.0 . 117 . C|1.000;T|0.000 Atlas-SNP OR2T11 127077 hgsc.bcm.edu hg19 1 248789769 248789769 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . OR2T11 NM_001001964 exon1 c.A661G p.T221A GGATGGTTAACAA . 224.0 18.0 198.0 0.0 . 64 . . Atlas-SNP ZNF638 27332 hgsc.bcm.edu hg19 2 71629093 71629093 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ZNF638 NM_014497 exon16 c.A2705G p.E902G AAACAGAAGAAAT . 49.0 9.0 62.0 0.0 . 179 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84921530 84921530 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . DNAH6 NM_001370 exon46 c.G7450A p.E2484K TTTCATGAAGACC . 158.0 13.0 152.0 0.0 . 194 . . Atlas-SNP FER1L5 90342 hgsc.bcm.edu hg19 2 97312182 97312182 + Missense_Mutation SNP T T A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . FER1L5 NM_001113382 exon2 c.T130A p.W44R CCCGTGTGGAATG . 273.0 14.0 325.0 0.0 . 113 . . Atlas-SNP SCN1A 6323 hgsc.bcm.edu hg19 2 166852534 166852534 + Missense_Mutation SNP G G T rs143088184 TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SCN1A NM_001165963 exon24 c.C4570A p.P1524T GTCGAGGTATAGG . 50.0 5.0 50.0 0.0 . 641 . G|1.000;T|0.000 Atlas-SNP ABCB11 8647 hgsc.bcm.edu hg19 2 169791714 169791714 + Silent SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ABCB11 NM_003742 exon23 c.C3036T p.L1012L GAAATGGAGCCCC . 165.0 16.0 174.0 0.0 . 136 . . Atlas-SNP ASNSD1 54529 hgsc.bcm.edu hg19 2 190531503 190531503 + Silent SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ASNSD1 NM_019048 exon4 c.G645T p.L215L TAGCCTGAGTCAA . 57.0 7.0 46.0 0.0 . 63 . . Atlas-SNP ZDBF2 57683 hgsc.bcm.edu hg19 2 207175044 207175044 + Missense_Mutation SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ZDBF2 NM_020923 exon5 c.G5792T p.G1931V AAAAGGGGCGTGT . 251.0 31.0 217.0 0.0 . 531 . . Atlas-SNP CAMP 820 hgsc.bcm.edu hg19 3 48266103 48266103 + Missense_Mutation SNP G G A rs375338469 TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CAMP NM_004345 exon3 c.G329A p.R110Q TGAAGCGGTGTAT . 187.0 27.0 231.0 0.0 . 12 . . Atlas-SNP APEH 327 hgsc.bcm.edu hg19 3 49720037 49720037 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . APEH NM_001640 exon19 c.T1751C p.M584T CCCTTATGGGTGG . 193.0 35.0 223.0 0.0 . 45 . . Atlas-SNP CISH 1154 hgsc.bcm.edu hg19 3 50645332 50645332 + Missense_Mutation SNP C C A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CISH NM_013324 exon4 c.G534T p.Q178H ATAGTGCTGCACA . 101.0 7.0 122.0 0.0 . 27 . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52441262 52441262 + Missense_Mutation SNP A A C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd BAP1,NS,carcinoma,+1,2 BAP1 NM_004656 exon7 c.T508G p.F170V TGACAAAGTGGAA . 148.0 23.0 160.0 0.0 . 371 . . Atlas-SNP KBTBD12 166348 hgsc.bcm.edu hg19 3 127642469 127642469 + Missense_Mutation SNP T T A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . KBTBD12 NM_207335 exon1 c.T565A p.S189T AACATATCCAGAG . 105.0 5.0 111.0 0.0 . 41 . . Atlas-SNP NMNAT3 349565 hgsc.bcm.edu hg19 3 139292479 139292479 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NMNAT3 NM_178177 exon4 c.G226A p.G76S CTGGGCCTTCCAT . 209.0 22.0 253.0 0.0 . 29 . . Atlas-SNP EPHB3 2049 hgsc.bcm.edu hg19 3 184294923 184294923 + Missense_Mutation SNP C C A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . EPHB3 NM_004443 exon5 c.C1306A p.P436T AAGAGCCCTCTGC . 60.0 7.0 68.0 0.0 . 114 . . Atlas-SNP CLDN1 9076 hgsc.bcm.edu hg19 3 190030766 190030766 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CLDN1 NM_021101 exon2 c.A283G p.I95V CAAAGATTGCTAT . 191.0 17.0 195.0 0.0 . 23 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3240242 3240242 + Missense_Mutation SNP T T A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . HTT NM_002111 exon65 c.T8960A p.F2987Y ACGACTTCTTCCC . 197.0 18.0 202.0 0.0 . 221 . . Atlas-SNP UBE2K 3093 hgsc.bcm.edu hg19 4 39780009 39780009 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . UBE2K NM_005339 exon7 c.A558G p.K186K TTCAAAATCATGG . 86.0 6.0 63.0 0.0 . 16 . . Atlas-SNP BMP2K 55589 hgsc.bcm.edu hg19 4 79808426 79808426 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . BMP2K NM_198892 exon15 c.A2050G p.I684V CCTTTCATTTCTC . 101.0 12.0 97.0 0.0 . 169 . . Atlas-SNP SYNPO2 171024 hgsc.bcm.edu hg19 4 119947795 119947795 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SYNPO2 NM_001128934 exon3 c.A271G p.I91V AGTGGAATAAGTG . 87.0 9.0 95.0 0.0 . 353 . . Atlas-SNP NUDT6 11162 hgsc.bcm.edu hg19 4 123814211 123814211 + Silent SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NUDT6 NM_007083 exon5 c.A723G p.E241E GCATTCTTCCTGG . 124.0 6.0 140.0 0.0 . 50 . . Atlas-SNP SPATA4 132851 hgsc.bcm.edu hg19 4 177113883 177113883 + Missense_Mutation SNP A A C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SPATA4 NM_144644 exon4 c.T583G p.S195A ATTCTGATAACCT . 83.0 9.0 100.0 0.0 . 44 . . Atlas-SNP FAM149A 25854 hgsc.bcm.edu hg19 4 187073131 187073131 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . FAM149A NM_001006655 exon3 c.A18G p.K6K AGGGAAAGTGAAC . 252.0 11.0 261.0 0.0 . 52 . . Atlas-SNP MARCH11 441061 hgsc.bcm.edu hg19 5 16067841 16067841 + Missense_Mutation SNP A A C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MARCH11 NM_001102562 exon4 c.T948G p.N316K GTGCAAATTCACA . 75.0 8.0 69.0 0.0 . 50 . . Atlas-SNP ERAP2 64167 hgsc.bcm.edu hg19 5 96215831 96215831 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ERAP2 NM_001130140 exon2 c.A442G p.I148V GAACAAATTGCAC . 209.0 24.0 205.0 0.0 . 77 . . Atlas-SNP HSPA9 3313 hgsc.bcm.edu hg19 5 137893621 137893621 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . HSPA9 NM_004134 exon13 c.A1570G p.I524V CATCAATGTCAAA . 211.0 34.0 224.0 0.0 . 49 . . Atlas-SNP PCDHA5 56143 hgsc.bcm.edu hg19 5 140203713 140203713 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . PCDHA5 NM_031501 exon1 c.G2353A p.V785M GACAACGTGAGTT . 132.0 11.0 161.0 0.0 . 361 . . Atlas-SNP PCDHB5 26167 hgsc.bcm.edu hg19 5 140516630 140516630 + Silent SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . PCDHB5 NM_015669 exon1 c.G1614A p.P538P CTCCCCGGCGCTG . 17.0 6.0 15.0 0.0 . 184 . . Atlas-SNP KIAA0141 9812 hgsc.bcm.edu hg19 5 141314143 141314143 + Missense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . KIAA0141 NM_001142603 exon10 c.A1141T p.N381Y GCAGCCAACAATG . 145.0 11.0 164.0 0.0 . 44 . . Atlas-SNP GEMIN5 25929 hgsc.bcm.edu hg19 5 154311099 154311099 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . GEMIN5 NM_015465 exon5 c.G700A p.A234T CTGGAGCTTGTGC . 140.0 27.0 119.0 0.0 . 120 . . Atlas-SNP RIPK1 8737 hgsc.bcm.edu hg19 6 3106115 3106115 + Missense_Mutation SNP A A G rs377213073 TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . RIPK1 NM_003804 exon8 c.A1406G p.Y469C GATTATATAGCTC . 230.0 10.0 212.0 0.0 . 56 . . Atlas-SNP FARS2 10667 hgsc.bcm.edu hg19 6 5369076 5369076 + Silent SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . FARS2 NM_006567 exon2 c.G273A p.E91E CAAGGAGAGGGTG . 275.0 11.0 276.0 0.0 . 33 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138629875 138629875 + Splice_Site SNP G G C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . KIAA1244 NM_020340 exon24 c.3974-1G>C . CCCTTAGGAAAAG . 149.0 9.0 161.0 0.0 . 236 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152638095 152638095 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SYNE1 NM_182961 exon87 c.T16599C p.N5533N CATTTCATTGTAT . 63.0 7.0 56.0 0.0 . 3227 . . Atlas-SNP TAGAP 117289 hgsc.bcm.edu hg19 6 159457832 159457832 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . TAGAP NM_054114 exon10 c.G1223A p.R408Q CCTACCCGGGGCA . 146.0 17.0 157.0 0.0 . 75 . . Atlas-SNP CCR6 1235 hgsc.bcm.edu hg19 6 167550283 167550283 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CCR6 NM_004367 exon3 c.T565C p.Y189H CAAAAATACAACA . 215.0 37.0 212.0 0.0 . 36 . . Atlas-SNP PDGFA 5154 hgsc.bcm.edu hg19 7 540840 540840 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . PDGFA NM_002607 exon5 c.A493G p.K165E CTTCTTTTAATTT . 192.0 28.0 180.0 0.0 . 34 . . Atlas-SNP HDAC9 9734 hgsc.bcm.edu hg19 7 18688120 18688120 + Silent SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . HDAC9 NM_178425 exon10 c.G1281A p.L427L TCCCTTGGCAACA . 65.0 9.0 63.0 0.0 . 560 . . Atlas-SNP LGI3 203190 hgsc.bcm.edu hg19 8 22006415 22006415 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . LGI3 NM_139278 exon8 c.G905A p.G302D TAAGAGCCGCCAA . 158.0 29.0 228.0 0.0 . 44 . . Atlas-SNP MMP16 4325 hgsc.bcm.edu hg19 8 89180168 89180168 + Nonsense_Mutation SNP C C A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MMP16 NM_005941 exon4 c.G439T p.E147X GAGTCTCAGGGTC . 142.0 7.0 149.0 0.0 . 176 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113348909 113348909 + Missense_Mutation SNP C C G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CSMD3 NM_198123 exon44 c.G6991C p.E2331Q TTGGTTCTGTTTG . 98.0 22.0 85.0 0.0 . 2325 . . Atlas-SNP SQLE 6713 hgsc.bcm.edu hg19 8 126030343 126030343 + Missense_Mutation SNP T T G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SQLE NM_003129 exon8 c.T1247G p.L416R ATCCACTTACTGG . 49.0 7.0 40.0 0.0 . 29 . . Atlas-SNP OR13J1 392309 hgsc.bcm.edu hg19 9 35869767 35869767 + Missense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . OR13J1 NM_001004487 exon1 c.T632A p.L211Q AATGCCAGGGGTA . 108.0 7.0 135.0 0.0 . 37 . . Atlas-SNP MSANTD3-TMEFF1 100526694 hgsc.bcm.edu hg19 9 103271393 103271393 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . . NM_001198812 exon3 c.T635C p.I212T CAGTAATAGCAAG . 63.0 15.0 55.0 0.0 . . . . Atlas-SNP ORM2 5005 hgsc.bcm.edu hg19 9 117093116 117093116 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ORM2 NM_000608 exon3 c.G302A p.R101Q TCCAGCGGGAGAA . 167.0 21.0 143.0 0.0 . 13 . . Atlas-SNP CDK5RAP2 55755 hgsc.bcm.edu hg19 9 123210343 123210343 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CDK5RAP2 NM_018249 exon22 c.A2855G p.Y952C AGACGATACATAT . 189.0 24.0 203.0 0.0 . 157 . . Atlas-SNP AK8 158067 hgsc.bcm.edu hg19 9 135698618 135698618 + Missense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . AK8 NM_152572 exon9 c.T863A p.L288Q TGGGCCAGGAGGG . 121.0 11.0 140.0 0.0 . 45 . . Atlas-SNP PMPCA 23203 hgsc.bcm.edu hg19 9 139313081 139313081 + Silent SNP C C G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . PMPCA NM_015160 exon9 c.C1065G p.P355P TGGGCCCGGCAAG . 137.0 9.0 139.0 0.0 . 29 . . Atlas-SNP NRP1 8829 hgsc.bcm.edu hg19 10 33515205 33515205 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NRP1 NM_001244973 exon7 c.C994T p.L332F GCAGAAGGCCCAA . 107.0 11.0 91.0 0.0 . 126 . . Atlas-SNP ZNF33A 7581 hgsc.bcm.edu hg19 10 38345268 38345268 + Missense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ZNF33A NM_006954 exon5 c.A2216T p.H739L CTCAACATCAGAG . 123.0 21.0 131.0 0.0 . 103 . . Atlas-SNP ZNF485 220992 hgsc.bcm.edu hg19 10 44112662 44112662 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ZNF485 NM_145312 exon5 c.T1171C p.F391L AAAGCCTTTCGGC . 90.0 7.0 91.0 0.0 . 102 . . Atlas-SNP DDX50 79009 hgsc.bcm.edu hg19 10 70679601 70679601 + Missense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . DDX50 NM_024045 exon8 c.A1103T p.Q368L CCATCCAGTGTCA . 219.0 20.0 282.0 0.0 . 65 . . Atlas-SNP MINPP1 9562 hgsc.bcm.edu hg19 10 89312033 89312033 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MINPP1 NM_004897 exon5 c.A1262G p.H421R TTTACCACTGTGA . 173.0 7.0 196.0 0.0 . 22 . . Atlas-SNP FGF8 2253 hgsc.bcm.edu hg19 10 103534534 103534534 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . FGF8 NM_033163 exon4 c.G292A p.A98T TGTTGGCCAGGAC . 87.0 4.0 96.0 0.0 . 23 . . Atlas-SNP CCDC147 159686 hgsc.bcm.edu hg19 10 106166547 106166547 + Missense_Mutation SNP T T G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CCDC147 NM_001008723 exon15 c.T2252G p.L751R TGCTCCTCCAGGT . 121.0 15.0 89.0 0.0 . 137 . . Atlas-SNP CSRP3 8048 hgsc.bcm.edu hg19 11 19206570 19206570 + Missense_Mutation SNP C C T rs377066670 TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd CSRP3,NS,malignant_melanoma,0,1 CSRP3 NM_003476 exon6 c.G437A p.R146H GCACAGCGGAAAC . 152.0 17.0 160.0 0.0 . 24 . . Atlas-SNP NELL1 4745 hgsc.bcm.edu hg19 11 20805310 20805310 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NELL1 NM_006157 exon3 c.T269C p.L90S CCATTTTGGCCAC . 92.0 19.0 115.0 0.0 . 179 . . Atlas-SNP PRR5L 79899 hgsc.bcm.edu hg19 11 36459019 36459019 + Missense_Mutation SNP C C A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . PRR5L NM_024841 exon7 c.C437A p.P146Q TTTATCCAGTTCA . 124.0 5.0 114.0 0.0 . 35 . . Atlas-SNP C11orf95 65998 hgsc.bcm.edu hg19 11 63531074 63531074 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . . NM_001144936 exon5 c.A1853G p.K618R TGGCGCTTGATGG . 46.0 6.0 75.0 0.0 . . . . Atlas-SNP RNF169 254225 hgsc.bcm.edu hg19 11 74546763 74546763 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . RNF169 NM_001098638 exon6 c.A1115G p.N372S AGAGCAATGACAG . 155.0 12.0 183.0 0.0 . 36 . . Atlas-SNP TAF1D 79101 hgsc.bcm.edu hg19 11 93472409 93472409 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . TAF1D NM_024116 exon2 c.A62G p.N21S CTTCGATTTGCAA . 80.0 15.0 73.0 0.0 . 18 . . Atlas-SNP SIAE 54414 hgsc.bcm.edu hg19 11 124517357 124517357 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SIAE NM_170601 exon7 c.T870C p.N290N TGTGCAATTGTAC . 116.0 17.0 100.0 0.0 . 37 . . Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133799610 133799610 + Nonsense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . IGSF9B NM_014987 exon12 c.G1587A p.W529X TGGTTCCCAGGAC . 133.0 14.0 154.0 0.0 . 290 . . Atlas-SNP IQSEC3 440073 hgsc.bcm.edu hg19 12 266301 266301 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . IQSEC3 NM_001170738 exon6 c.T2264C p.I755T GGCTCATTGAGGC . 315.0 45.0 385.0 0.0 . 154 . . Atlas-SNP CACNA1C 775 hgsc.bcm.edu hg19 12 2614096 2614096 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CACNA1C NM_001129831 exon8 c.T1202C p.L401P TGGTTCTCGGTGT . 156.0 17.0 176.0 0.0 . 1023 . . Atlas-SNP AKAP3 10566 hgsc.bcm.edu hg19 12 4737905 4737905 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . AKAP3 NM_006422 exon4 c.G163A p.E55K GGAACTCTGCTGT . 181.0 37.0 191.0 0.0 . 212 . . Atlas-SNP LEMD3 23592 hgsc.bcm.edu hg19 12 65633985 65633985 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . LEMD3 NM_014319 exon8 c.A2093G p.H698R TTCCACATGTACG . 131.0 8.0 113.0 0.0 . 68 . . Atlas-SNP OTOGL 283310 hgsc.bcm.edu hg19 12 80746178 80746178 + Missense_Mutation SNP T T A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . OTOGL NM_173591 exon44 c.T5342A p.F1781Y ACAAGTTTGATAT . 96.0 8.0 80.0 0.0 . 235 . . Atlas-SNP COX6A1 1337 hgsc.bcm.edu hg19 12 120878337 120878337 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . COX6A1 NM_004373 exon3 c.A327G p.E109E AGATGAATAAAGA . 221.0 28.0 252.0 0.0 . 5 . . Atlas-SNP PCDH9 5101 hgsc.bcm.edu hg19 13 67801110 67801110 + Nonsense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . PCDH9 NM_203487 exon2 c.T1463A p.L488X GTTGTTAAGTATA . 202.0 33.0 170.0 0.0 . 252 . . Atlas-SNP NALCN 259232 hgsc.bcm.edu hg19 13 101726938 101726938 + Missense_Mutation SNP G G C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd NALCN,NS,malignant_melanoma,0,1 NALCN NM_052867 exon36 c.C4030G p.L1344V GCAAGAGAAACAT . 43.0 7.0 38.0 0.0 . 431 . . Atlas-SNP NALCN 259232 hgsc.bcm.edu hg19 13 101759941 101759941 + Missense_Mutation SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NALCN NM_052867 exon22 c.C2476A p.L826I CTCTGAGTTCCTC . 141.0 24.0 133.0 0.0 . 431 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103396874 103396874 + Missense_Mutation SNP T T A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . . NM_001146197 exon4 c.A6173T p.Y2058F ATCATGTATCCAG . 80.0 4.0 83.0 0.0 . . . . Atlas-SNP CHAMP1 283489 hgsc.bcm.edu hg19 13 115090198 115090198 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . . NM_001164144 exon3 c.C881T p.P294L CGTTCCCTGCTGT . 67.0 4.0 79.0 0.0 . . . . Atlas-SNP NUBPL 80224 hgsc.bcm.edu hg19 14 32031297 32031297 + Silent SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NUBPL NM_025152 exon2 c.C132T p.T44T TGAGACCCTAAAA . 62.0 11.0 67.0 0.0 . 21 . . Atlas-SNP ARHGAP5 394 hgsc.bcm.edu hg19 14 32563379 32563379 + Nonsense_Mutation SNP T T A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ARHGAP5 NM_001173 exon2 c.T3504A p.Y1168X ATACTATAGAAGA . 141.0 11.0 163.0 0.0 . 166 . . Atlas-SNP MAGEL2 54551 hgsc.bcm.edu hg19 15 23890789 23890789 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MAGEL2 NM_019066 exon1 c.G2101A p.V701I CTGCTACCGGGGG . 76.0 21.0 100.0 0.0 . 108 . . Atlas-SNP UBR1 197131 hgsc.bcm.edu hg19 15 43318859 43318859 + Missense_Mutation SNP T T G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . UBR1 NM_174916 exon23 c.A2435C p.K812T CCTGGTTTCCTAA . 52.0 12.0 47.0 0.0 . 124 . . Atlas-SNP DENND4A 10260 hgsc.bcm.edu hg19 15 65994749 65994749 + Missense_Mutation SNP C C A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . DENND4A NM_001144823 exon17 c.G2324T p.C775F GGGAGACAAATAA . 190.0 9.0 189.0 0.0 . 217 . . Atlas-SNP CT62 196993 hgsc.bcm.edu hg19 15 71404534 71404534 + Missense_Mutation SNP T T A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CT62 NM_001102658 exon3 c.A88T p.S30C AATGGCTGAATGT . 102.0 12.0 110.0 0.0 . 7 . . Atlas-SNP THSD4 79875 hgsc.bcm.edu hg19 15 71548960 71548960 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . THSD4 NM_024817 exon5 c.A921G p.P307P ATGTCCAGAAAGC . 106.0 11.0 115.0 0.0 . 75 . . Atlas-SNP BLM 641 hgsc.bcm.edu hg19 15 91354495 91354495 + Missense_Mutation SNP C C A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . BLM NM_000057 exon21 c.C3935A p.A1312D GTGCCGCTGAGGA . 87.0 4.0 81.0 0.0 . 122 . . Atlas-SNP KDM8 79831 hgsc.bcm.edu hg19 16 27232040 27232040 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . . NM_001145348 exon8 c.T1354C p.W452R AGCTTCTGGTGGT . 207.0 23.0 192.0 0.0 . . . . Atlas-SNP ATXN2L 11273 hgsc.bcm.edu hg19 16 28846411 28846411 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ATXN2L NM_148414 exon19 c.A2466G p.P822P CAACCCACGCATG . 168.0 22.0 200.0 0.0 . 159 . . Atlas-SNP ZNF646 9726 hgsc.bcm.edu hg19 16 31088438 31088438 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ZNF646 NM_014699 exon2 c.A793G p.I265V CTGGGCATCTACC . 151.0 16.0 179.0 0.0 . 133 . . Atlas-SNP NOD2 64127 hgsc.bcm.edu hg19 16 50744637 50744637 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NOD2 NM_022162 exon4 c.G815A p.S272N AGAAGAGCCCAGC . 105.0 10.0 125.0 0.0 . 118 . . Atlas-SNP CDH11 1009 hgsc.bcm.edu hg19 16 64981642 64981642 + Missense_Mutation SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd CDH11,colon,carcinoma,0,1 CDH11 NM_001797 exon13 c.C2255A p.A752D GACCCGGCCACTG . 130.0 8.0 161.0 0.0 . 260 . . Atlas-SNP ITGAE 3682 hgsc.bcm.edu hg19 17 3680880 3680880 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ITGAE NM_002208 exon2 c.G109A p.V37M TGAGCACGAAAGG . 147.0 20.0 140.0 0.0 . 96 . . Atlas-SNP CAMTA2 23125 hgsc.bcm.edu hg19 17 4876952 4876952 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CAMTA2 NM_001171167 exon13 c.G2198A p.R733Q ATGCCCCGGAAGG . 90.0 11.0 105.0 0.0 . 93 . . Atlas-SNP SLC5A10 125206 hgsc.bcm.edu hg19 17 18872410 18872410 + Missense_Mutation SNP T T G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SLC5A10 NM_001042450 exon6 c.T499G p.W167G CTGGGCTGGAACT . 156.0 12.0 209.0 0.0 . 55 . . Atlas-SNP CCL13 6357 hgsc.bcm.edu hg19 17 32685070 32685070 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CCL13 NM_005408 exon3 c.A217G p.I73V AAGGAGATCTGTG . 146.0 13.0 104.0 0.0 . 17 . . Atlas-SNP SPAG9 9043 hgsc.bcm.edu hg19 17 49048126 49048126 + Silent SNP C C A rs112947211 bycluster;byfrequency;alternate_allele TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SPAG9 NM_001130528 exon29 c.G3792T p.T1264T CAAGGGCGTCTGA . 143.0 17.0 198.0 0.0 . 151 . C|0.999;T|0.001 Atlas-SNP KIF2B 84643 hgsc.bcm.edu hg19 17 51901391 51901391 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . KIF2B NM_032559 exon1 c.G997A p.A333T CTGGTGGCACAGG . 121.0 18.0 117.0 0.0 . 254 . . Atlas-SNP KCNH6 81033 hgsc.bcm.edu hg19 17 61613399 61613399 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . KCNH6 NM_030779 exon6 c.G1471A p.V491I GAGAAGGTCTTCT . 145.0 16.0 151.0 0.0 . 122 . . Atlas-SNP NPLOC4 55666 hgsc.bcm.edu hg19 17 79589216 79589216 + Missense_Mutation SNP T T A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NPLOC4 NM_017921 exon3 c.A185T p.K62I AGGGATTTGTTGG . 89.0 9.0 93.0 0.0 . 27 . . Atlas-SNP MYOM1 8736 hgsc.bcm.edu hg19 18 3155037 3155037 + Silent SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MYOM1 NM_003803 exon11 c.G1551A p.K517K CAAGCACTTCACA . 72.0 9.0 78.0 0.0 . 192 . . Atlas-SNP NDUFV2 4729 hgsc.bcm.edu hg19 18 9119504 9119504 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NDUFV2 NM_021074 exon4 c.A216G p.E72E TCCAGAAGGCCAT . 113.0 11.0 118.0 0.0 . 17 . . Atlas-SNP MOCOS 55034 hgsc.bcm.edu hg19 18 33778679 33778679 + Missense_Mutation SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MOCOS NM_017947 exon3 c.A259G p.S87G ATCAGCAGCAAGC . 237.0 12.0 222.0 0.0 . 84 . . Atlas-SNP SERPINB3 6317 hgsc.bcm.edu hg19 18 61325772 61325772 + Missense_Mutation SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SERPINB3 NM_006919 exon5 c.C444A p.N148K CCAGGAGTTAATC . 103.0 12.0 105.0 0.0 . 90 . . Atlas-SNP ADNP2 22850 hgsc.bcm.edu hg19 18 77895740 77895740 + Missense_Mutation SNP A A T rs113879497 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ADNP2 NM_014913 exon4 c.A2444T p.N815I ATGCCAATGGCAA . 94.0 16.0 91.0 0.0 . 102 . A|0.999;G|0.001 Atlas-SNP CD70 970 hgsc.bcm.edu hg19 19 6586092 6586092 + Missense_Mutation SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CD70 NM_001252 exon3 c.C521A p.T174K AAAAGTGTCCCAG . 102.0 16.0 93.0 0.0 . 24 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9059729 9059729 + Silent SNP G G C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MUC16 NM_024690 exon3 c.C27717G p.S9239S GACAGAGGAAGGA . 281.0 26.0 367.0 0.0 . 4315 . . Atlas-SNP KEAP1 9817 hgsc.bcm.edu hg19 19 10600002 10600002 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . KEAP1 NM_012289 exon5 c.A1574G p.Y525C CCATCATAGCCCC . 152.0 9.0 197.0 0.0 . 182 . . Atlas-SNP ZNF254 9534 hgsc.bcm.edu hg19 19 24309164 24309164 + Missense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ZNF254 NM_203282 exon4 c.A362T p.Q121L ATTTACAGTTAAG . 120.0 6.0 91.0 0.0 . 88 . . Atlas-SNP ZFP82 284406 hgsc.bcm.edu hg19 19 36884090 36884090 + Missense_Mutation SNP A A C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ZFP82 NM_133466 exon5 c.T1152G p.H384Q TCTGTGATGGAGA . 114.0 11.0 101.0 0.0 . 71 . . Atlas-SNP CIC 23152 hgsc.bcm.edu hg19 19 42798805 42798805 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CIC NM_015125 exon19 c.A4377G p.P1459P GGTGCCATACTCC . 114.0 18.0 148.0 0.0 . 249 . . Atlas-SNP SCAF1 58506 hgsc.bcm.edu hg19 19 50156751 50156751 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . SCAF1 NM_021228 exon7 c.A3105G p.E1035E AGAGGAAGAGGAG . 19.0 6.0 23.0 0.0 . 78 . . Atlas-SNP NLRP12 91662 hgsc.bcm.edu hg19 19 54310856 54310856 + Silent SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NLRP12 NM_144687 exon4 c.G2136A p.L712L GTTTGGATTGGTG . 133.0 6.0 158.0 0.0 . 236 . . Atlas-SNP CHMP2A 27243 hgsc.bcm.edu hg19 19 59063031 59063031 + Missense_Mutation SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CHMP2A NM_198426 exon6 c.C654A p.N218K CCGCAGGTTCTTA . 69.0 5.0 76.0 0.0 . 25 . . Atlas-SNP PLK1S1 55857 hgsc.bcm.edu hg19 20 21213370 21213370 + Splice_Site SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . . NM_001163023 exon9 c.1384-2A>T . TATCACAGGTTTG . 132.0 7.0 113.0 0.0 . . . . Atlas-SNP DIDO1 11083 hgsc.bcm.edu hg19 20 61511821 61511821 + Silent SNP A A G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . DIDO1 NM_001193369 exon16 c.T5487C p.S1829S AAGGTAAGAGGGT . 129.0 14.0 156.0 0.0 . 321 . . Atlas-SNP KRTAP13-3 337960 hgsc.bcm.edu hg19 21 31797785 31797785 + Missense_Mutation SNP G G A novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . KRTAP13-3 NM_181622 exon1 c.C446T p.P149L TAGATTGGATGGC . 72.0 7.0 103.0 0.0 . 47 . . Atlas-SNP CSTB 1476 hgsc.bcm.edu hg19 21 45194153 45194153 + Missense_Mutation SNP T T C novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CSTB NM_000100 exon3 c.A227G p.E76G TTGTTTTCATGAG . 341.0 26.0 335.0 0.0 . 3 . . Atlas-SNP RASD2 23551 hgsc.bcm.edu hg19 22 35942929 35942929 + Missense_Mutation SNP C C G novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . RASD2 NM_014310 exon2 c.C73G p.L25V GTGGTGCTGGGTG . 129.0 15.0 150.0 0.0 . 34 . . Atlas-SNP GRAP2 9402 hgsc.bcm.edu hg19 22 40351828 40351828 + Missense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . GRAP2 NM_004810 exon3 c.A84T p.L28F GATTTTAAGTAAC . 100.0 4.0 109.0 0.0 . 29 . . Atlas-SNP ARSA 410 hgsc.bcm.edu hg19 22 51064685 51064685 + Silent SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . ARSA NM_001085426 exon6 c.C876A p.S292S GCCTCGGGACATA . 99.0 4.0 133.0 0.0 . 19 . . Atlas-SNP NXF3 56000 hgsc.bcm.edu hg19 X 102334164 102334164 + Missense_Mutation SNP C C T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NXF3 NM_022052 exon16 c.G1363A p.G455R ACACCCCGTTGAC . 275.0 87.0 270.0 0.0 . 81 . . Atlas-SNP TEX13A 56157 hgsc.bcm.edu hg19 X 104464383 104464383 + Silent SNP G G T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . TEX13A NM_031274 exon3 c.C495A p.A165A CCCTCCGGCAGTG . 7.0 4.0 15.0 0.0 . 55 . . Atlas-SNP MAGEA4 4103 hgsc.bcm.edu hg19 X 151093077 151093077 + Missense_Mutation SNP A A T novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . MAGEA4 NM_001011548 exon3 c.A941T p.E314V AGGAGGAAGAGGG . 103.0 8.0 132.0 0.0 . 68 . . Atlas-SNP CNOT4 4850 hgsc.bcm.edu hg19 7 135122994 135122994 + Frame_Shift_Del DEL A A - novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . CNOT4 NM_001190847 exon2 c.87delC p.F29fs . . 221.0 35.0 248.0 0.0 . 146 . . Atlas-Indel,Pindel NCOR1 9611 hgsc.bcm.edu hg19 17 15942894 15942923 + In_Frame_Del DEL CCTTCCTGATAATGTCTTCCAGCCCAAGAT CCTTCCTGATAATGTCTTCCAGCCCAAGAT - novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 CCTTCCTGATAATGTCTTCCAGCCCAAGAT CCTTCCTGATAATGTCTTCCAGCCCAAGAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . NCOR1 NM_006311 exon44 c.6780_6809del p.2260_2270del . . 178.0 11.0 181.0 0.0 . 240 . . Pindel FBXO31 79791 hgsc.bcm.edu hg19 16 87376481 87376503 + Frame_Shift_Del DEL GCCGGCTGGTGGGCTCACCTCCT GCCGGCTGGTGGGCTCACCTCCT - novel TCGA-ED-A4XI-01A-11D-A25V-10 TCGA-ED-A4XI-10A-01D-A25V-10 GCCGGCTGGTGGGCTCACCTCCT GCCGGCTGGTGGGCTCACCTCCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 670f971f-a525-4ef8-91ba-610cfbaeb914 72f5179f-1c32-4e78-8f77-027a5400e7fd . FBXO31 NM_024735 exon5 c.729_732del p.243_244del . . 151.0 11.0 201.0 0.0 . 82 . . Pindel