Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PTCHD2	57540	hgsc.bcm.edu	hg19	1	11591031	11591031	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PTCHD2	NM_020780	exon16	c.A3170T	p.K1057M	TCTGCAAGGCCAT	.	80.0	35.0	70.0	0.0	.	193	.	.	Atlas-SNP
ZBTB17	7709	hgsc.bcm.edu	hg19	1	16271442	16271442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ZBTB17	NM_003443	exon7	c.A917G	p.H306R	CACTTGTGGATGA	.	33.0	14.0	32.0	0.0	.	45	.	.	Atlas-SNP
PADI4	23569	hgsc.bcm.edu	hg19	1	17690224	17690224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PADI4	NM_012387	exon16	c.T1966A	p.F656I	TTCTCCTTCAAGT	.	129.0	52.0	134.0	0.0	.	70	.	.	Atlas-SNP
PAX7	5081	hgsc.bcm.edu	hg19	1	19018334	19018334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PAX7	NM_002584	exon5	c.A673T	p.T225S	ACATTCACGGCCG	.	165.0	53.0	158.0	0.0	.	127	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	33985196	33985196	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CSMD2	NM_052896	exon69	c.C10386T	p.Y3462Y	GCGGTCGTACATT	.	124.0	55.0	73.0	0.0	.	946	.	.	Atlas-SNP
SLC2A1	6513	hgsc.bcm.edu	hg19	1	43393339	43393339	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	SLC2A1	NM_006516	exon9	c.C1215T	p.A405A	TGCAACGGCAATG	.	213.0	88.0	179.0	0.0	.	36	.	.	Atlas-SNP
CYP4B1	1580	hgsc.bcm.edu	hg19	1	47278257	47278257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CYP4B1	NM_000779	exon4	c.T457A	p.Y153N	AAGCCCTATGTGG	.	128.0	41.0	118.0	0.0	.	81	.	.	Atlas-SNP
PYGO2	90780	hgsc.bcm.edu	hg19	1	154931788	154931788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PYGO2	NM_138300	exon3	c.C688T	p.P230S	GACCAGGTCTCTG	.	211.0	119.0	124.0	0.0	.	32	.	.	Atlas-SNP
CLK2	1196	hgsc.bcm.edu	hg19	1	155239305	155239305	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CLK2	NM_003993	exon3	c.A373T	p.S125C	TCCGGCTGCGCCT	.	77.0	46.0	47.0	0.0	.	55	.	.	Atlas-SNP
ARHGAP30	257106	hgsc.bcm.edu	hg19	1	161021132	161021132	+	Silent	SNP	A	A	T	rs144785706	bycluster;byfrequency;alternate_allele	TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ARHGAP30	NM_001025598	exon10	c.T1392A	p.P464P	AGGGCCAGGGCCA	.	103.0	33.0	66.0	0.0	.	105	.	A|0.999;G|0.001	Atlas-SNP
MROH9	80133	hgsc.bcm.edu	hg19	1	170967477	170967477	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	.	NM_025063	exon15	c.C1658A	p.S553X	TTAAATCAAAATT	.	91.0	28.0	61.0	0.0	.	.	.	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175053028	175053028	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	TNN	NM_022093	exon5	c.T1191A	p.T397T	GGTCACTGTGCCC	.	140.0	85.0	93.0	0.0	.	297	.	.	Atlas-SNP
KIF14	9928	hgsc.bcm.edu	hg19	1	200558393	200558393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	KIF14	NM_014875	exon18	c.A3066G	p.I1022M	GACATATATTTCC	.	122.0	70.0	89.0	0.0	.	156	.	.	Atlas-SNP
SMYD2	56950	hgsc.bcm.edu	hg19	1	214504364	214504364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	SMYD2	NM_020197	exon9	c.A888T	p.R296S	GGTCAGATATGCA	.	177.0	52.0	156.0	0.0	.	40	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	hg19	2	1652300	1652300	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PXDN	NM_012293	exon17	c.G3252A	p.L1084L	CTCGTCCAGCCGG	.	75.0	32.0	70.0	0.0	.	255	.	.	Atlas-SNP
DNAJC27	51277	hgsc.bcm.edu	hg19	2	25179973	25179973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DNAJC27	NM_016544	exon5	c.A467C	p.K156T	AACCCTTTGCTTT	.	127.0	50.0	118.0	0.0	.	37	.	.	Atlas-SNP
TMEM131	23505	hgsc.bcm.edu	hg19	2	98543941	98543941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	TMEM131	NM_015348	exon2	c.A197T	p.Q66L	TCTGACTGAACGA	.	870.0	353.0	904.0	1.0	.	258	.	.	Atlas-SNP
DDX18	8886	hgsc.bcm.edu	hg19	2	118577227	118577227	+	Missense_Mutation	SNP	A	A	T	rs375147442	alternate_allele	TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DDX18	NM_006773	exon3	c.A373T	p.T125S	AAAGATACGAAAA	.	528.0	204.0	586.0	0.0	.	79	.	.	Atlas-SNP
MMADHC	27249	hgsc.bcm.edu	hg19	2	150435994	150435994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	MMADHC	NM_015702	exon4	c.C323T	p.S108L	TCACTTGATAAAG	.	171.0	8.0	156.0	0.0	.	20	.	.	Atlas-SNP
KCNH7	90134	hgsc.bcm.edu	hg19	2	163292032	163292032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	KCNH7	NM_033272	exon8	c.T1630A	p.Y544N	CTGAATATCGATC	.	86.0	26.0	98.0	0.0	.	378	.	.	Atlas-SNP
PLCL1	5334	hgsc.bcm.edu	hg19	2	198950034	198950034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	PLCL1_ENST00000428675,NS,carcinoma,0,2	PLCL1	NM_006226	exon2	c.G1793A	p.R598K	AATACAGGGATTT	.	127.0	59.0	119.0	0.0	.	358	.	.	Atlas-SNP
ZNF142	7701	hgsc.bcm.edu	hg19	2	219513536	219513536	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ZNF142	NM_001105537	exon6	c.C1095A	p.G365G	AGGGTGGCCCTGC	.	121.0	49.0	126.0	0.0	.	190	.	.	Atlas-SNP
NR2C2	7182	hgsc.bcm.edu	hg19	3	15084400	15084400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	NR2C2	NM_003298	exon15	c.A1733G	p.E578G	TAACAGAAGAACT	.	229.0	106.0	222.0	0.0	.	44	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	CTNNB1,gallbladder,other,+1,128	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	197.0	98.0	189.0	1.0	.	4904	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	hg19	3	49721754	49721754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	MST1	NM_020998	exon17	c.C2009T	p.A670V	TCACAGGCCCCCA	.	204.0	72.0	193.0	0.0	.	84	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	97367160	97367160	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	EPHA6	NM_173655	exon13	c.T991A	p.C331S	AACCTCTGCTATT	.	82.0	40.0	128.0	0.0	.	439	.	.	Atlas-SNP
WDR52	55779	hgsc.bcm.edu	hg19	3	113120468	113120468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	WDR52	NM_001164496	exon10	c.A1289T	p.K430I	TTCATTTTTATCA	.	190.0	84.0	171.0	0.0	.	151	.	.	Atlas-SNP
ZBTB38	253461	hgsc.bcm.edu	hg19	3	141163168	141163168	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ZBTB38	NM_001080412	exon8	c.T1938C	p.N646N	TGCCAATGTACAA	.	69.0	28.0	92.0	0.0	.	92	.	.	Atlas-SNP
C3orf58	205428	hgsc.bcm.edu	hg19	3	143704424	143704424	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	C3orf58	NM_173552	exon2	c.C697G	p.L233V	AAGTATCTTGGAG	.	186.0	66.0	167.0	0.0	.	36	.	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	hg19	3	180378364	180378364	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CCDC39	NM_181426	exon4	c.A510C	p.K170N	CCTGATTTTATTA	.	103.0	39.0	121.0	0.0	.	242	.	.	Atlas-SNP
ADIPOQ	9370	hgsc.bcm.edu	hg19	3	186572279	186572279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ADIPOQ	NM_001177800	exon4	c.G521A	p.S174N	AGGTCAGCCTCTT	.	158.0	74.0	130.0	0.0	.	35	.	.	Atlas-SNP
TMEM44	93109	hgsc.bcm.edu	hg19	3	194349215	194349215	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	TMEM44	NM_138399	exon2	c.A161T	p.Q54L	GGTTTCTGTGCAC	.	80.0	32.0	93.0	0.0	.	42	.	.	Atlas-SNP
ZNF718	255403	hgsc.bcm.edu	hg19	4	53384	53384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	.	NM_001039127	exon1	c.T2A	p.M1K	GGGAAATGGTGAG	.	119.0	6.0	88.0	0.0	.	.	.	.	Atlas-SNP
CLNK	116449	hgsc.bcm.edu	hg19	4	10522420	10522420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CLNK	NM_052964	exon15	c.A767G	p.N256S	CCTCTGTTTTGCA	.	109.0	45.0	128.0	0.0	.	85	.	.	Atlas-SNP
HELQ	113510	hgsc.bcm.edu	hg19	4	84361091	84361091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	HELQ	NM_133636	exon8	c.A1733T	p.Y578F	CAGGAATAATTGG	.	718.0	287.0	648.0	2.0	.	95	.	.	Atlas-SNP
CDS1	1040	hgsc.bcm.edu	hg19	4	85564293	85564293	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CDS1	NM_001263	exon11	c.C1149A	p.I383I	CAAAATCAAGGTG	.	58.0	20.0	86.0	0.0	.	58	.	.	Atlas-SNP
PAM	5066	hgsc.bcm.edu	hg19	5	102360941	102360941	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PAM	NM_001177306	exon23	c.G2592T	p.V864V	GGGAGTGCCTGTT	.	200.0	89.0	198.0	0.0	.	180	.	.	Atlas-SNP
PCDHGB7	56099	hgsc.bcm.edu	hg19	5	140799184	140799184	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PCDHGB7	NM_018927	exon1	c.C1758T	p.Y586Y	AGGCTACCTGGTG	.	98.0	42.0	71.0	0.0	.	117	.	.	Atlas-SNP
MYLIP	29116	hgsc.bcm.edu	hg19	6	16143347	16143347	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	MYLIP	NM_013262	exon4	c.A561T	p.I187I	TGGCATAGAATGG	.	177.0	75.0	154.0	0.0	.	44	.	.	Atlas-SNP
CCHCR1	54535	hgsc.bcm.edu	hg19	6	31110818	31110818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CCHCR1	NM_001105564	exon17	c.G2413T	p.V805L	TGGACACCACAGA	.	210.0	84.0	173.0	0.0	.	68	.	.	Atlas-SNP
COL19A1	1310	hgsc.bcm.edu	hg19	6	70890392	70890392	+	Missense_Mutation	SNP	C	C	G	rs369271643		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	COL19A1,NS,carcinoma,0,1	COL19A1	NM_001858	exon44	c.C2752G	p.P918A	CCTGGACCAGAAG	.	124.0	49.0	143.0	0.0	.	232	.	.	Atlas-SNP
MCM9	254394	hgsc.bcm.edu	hg19	6	119147392	119147392	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	MCM9	NM_017696	exon11	c.C1879T	p.Q627X	GGTACTGCTCTCC	.	97.0	37.0	117.0	0.0	.	73	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136582573	136582573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	BCLAF1	NM_014739	exon12	c.G2587A	p.G863R	CTCTTCCTCTTTT	.	133.0	40.0	115.0	0.0	.	203	.	.	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	hg19	7	50468300	50468300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	IKZF1	NM_006060	exon8	c.G1535A	p.G512E	CGCGAGGGGAGCA	.	43.0	14.0	51.0	0.0	.	613	.	.	Atlas-SNP
CHCHD2	51142	hgsc.bcm.edu	hg19	7	56170565	56170565	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CHCHD2	NM_016139	exon3	c.C440G	p.A147G	CCGTTTGCAAGTC	.	69.0	25.0	68.0	0.0	.	10	.	.	Atlas-SNP
CLIP2	7461	hgsc.bcm.edu	hg19	7	73790427	73790427	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CLIP2	NM_003388	exon10	c.A1696T	p.K566X	CGGGATAAATACG	.	193.0	73.0	202.0	0.0	.	134	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82435068	82435068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PCLO	NM_033026	exon21	c.A14869G	p.S4957G	CCACGCTATACCC	.	114.0	42.0	136.0	0.0	.	1506	.	.	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	hg19	7	87175239	87175239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ABCB1	NM_000927	exon16	c.A1827T	p.K609N	ATTTCCTTTCTCC	.	140.0	47.0	119.0	0.0	.	263	.	.	Atlas-SNP
WASL	8976	hgsc.bcm.edu	hg19	7	123346348	123346348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	WASL	NM_003941	exon4	c.G419A	p.R140H	TGTCGACGGCCCA	.	113.0	40.0	90.0	0.0	.	70	.	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	hg19	7	140223158	140223158	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DENND2A	NM_015689	exon15	c.A2614T	p.R872W	CGTTCCTCTGTTC	.	63.0	26.0	62.0	0.0	.	132	.	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	hg19	7	140273641	140273641	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DENND2A	NM_015689	exon4	c.A1413T	p.P471P	GTTCTGTGGGTCT	.	169.0	85.0	177.0	0.0	.	132	.	.	Atlas-SNP
TAS2R38	5726	hgsc.bcm.edu	hg19	7	141673266	141673266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	TAS2R38	NM_176817	exon1	c.C224A	p.A75D	TGGATAGCACTCA	.	97.0	42.0	96.0	0.0	.	51	.	.	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142563322	142563322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	EPHB6,NS,carcinoma,0,1	EPHB6	NM_004445	exon8	c.G1039C	p.V347L	GCCCCCGTTTGCC	.	47.0	2.0	63.0	0.0	.	168	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110376804	110376804	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PKHD1L1	NM_177531	exon2	c.A102T	p.T34T	AGTCACAGAAATA	.	141.0	98.0	66.0	0.0	.	522	.	.	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100080860	100080860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	.	NM_020893	exon10	c.A1207T	p.I403F	TGCACCATCTGGT	.	56.0	29.0	47.0	0.0	.	.	.	.	Atlas-SNP
FAS	355	hgsc.bcm.edu	hg19	10	90768661	90768661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	FAS	NM_152872	exon4	c.T350C	p.I117T	TGGAAATAAACTG	.	139.0	47.0	117.0	0.0	.	47	.	.	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	hg19	11	2436237	2436237	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	TRPM5	NM_014555	exon10	c.T1520A	p.L507Q	TCCAGCAGCCACT	.	68.0	29.0	54.0	0.0	.	86	.	.	Atlas-SNP
ANO5	203859	hgsc.bcm.edu	hg19	11	22257809	22257809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ANO5	NM_213599	exon8	c.A749G	p.Y250C	CTGCCTATCCACT	.	97.0	41.0	111.0	0.0	.	162	.	.	Atlas-SNP
OR8U1	219417	hgsc.bcm.edu	hg19	11	56143291	56143291	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	OR8U1	NM_001005204	exon1	c.C192T	p.S64S	TCTTAGCAACCTA	.	81.0	33.0	103.0	0.0	.	59	.	.	Atlas-SNP
OR5B21	219968	hgsc.bcm.edu	hg19	11	58274925	58274925	+	Silent	SNP	T	T	A	rs146969149	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	OR5B21	NM_001005218	exon1	c.A654T	p.I218I	GATGCATATGAAG	.	142.0	51.0	150.0	0.0	.	59	.	T|1.000;C|0.000	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93432696	93432696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	KIAA1731	NM_033395	exon15	c.A4618T	p.R1540W	GAGAAAAGGGTAT	.	161.0	68.0	171.0	0.0	.	173	.	.	Atlas-SNP
ARHGAP42	143872	hgsc.bcm.edu	hg19	11	100807044	100807044	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ARHGAP42	NM_152432	exon8	c.T813C	p.Y271Y	AGGCTATCTGTAT	.	178.0	67.0	171.0	0.0	.	32	.	.	Atlas-SNP
MMP10	4319	hgsc.bcm.edu	hg19	11	102650037	102650037	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	MMP10	NM_002425	exon3	c.A403T	p.K135X	GAGCTTTCTCAAT	.	133.0	48.0	134.0	0.0	.	44	.	.	Atlas-SNP
ZC3H12C	85463	hgsc.bcm.edu	hg19	11	110007788	110007788	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ZC3H12C	NM_033390	exon2	c.A422C	p.K141T	ACTTTAAACCTGA	.	82.0	29.0	116.0	0.0	.	83	.	.	Atlas-SNP
SPA17	53340	hgsc.bcm.edu	hg19	11	124551357	124551357	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	SPA17	NM_017425	exon3	c.225+2T>C	.	TCGAGGTATGGTC	.	152.0	44.0	135.0	0.0	.	16	.	.	Atlas-SNP
NOP2	4839	hgsc.bcm.edu	hg19	12	6666361	6666361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	NOP2	NM_001258309	exon17	c.A2336G	p.H779R	GGCTGATGATGGT	.	210.0	80.0	193.0	0.0	.	44	.	.	Atlas-SNP
TAS2R31	259290	hgsc.bcm.edu	hg19	12	11183213	11183213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	TAS2R31	NM_176885	exon1	c.A722T	p.Y241F	AGAAAGTAAACGG	.	274.0	118.0	256.0	1.0	.	24	.	.	Atlas-SNP
PPP1R12A	4659	hgsc.bcm.edu	hg19	12	80328602	80328602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	PPP1R12A,bladder,carcinoma,0,1	PPP1R12A	NM_002480	exon1	c.A110G	p.K37R	TCGAACTTCACCT	.	89.0	36.0	96.0	0.0	.	76	.	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104149232	104149232	+	Missense_Mutation	SNP	C	C	G	rs375211716	alternate_allele	TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	STAB2	NM_017564	exon62	c.C6867G	p.C2289W	CTTCTGCTATCGG	.	83.0	38.0	89.0	0.0	.	370	.	.	Atlas-SNP
ISCU	23479	hgsc.bcm.edu	hg19	12	108960984	108960984	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ISCU	NM_213595	exon4	c.A358T	p.I120F	TTGACTATCAAAA	.	58.0	22.0	84.0	0.0	.	19	.	.	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41946367	41946367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	NAA16	NM_024561	exon16	c.A1976T	p.K659M	CCGTTAAGTTCCT	.	251.0	101.0	272.0	0.0	.	74	.	.	Atlas-SNP
DLEU7	220107	hgsc.bcm.edu	hg19	13	51417697	51417697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DLEU7	NM_198989	exon1	c.G86A	p.G29D	CCCCAGCCCCACT	.	22.0	12.0	26.0	0.0	.	6	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103398417	103398417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	.	NM_001146197	exon4	c.G4630A	p.E1544K	CTGTTTCGTTGGC	.	139.0	45.0	125.0	0.0	.	.	.	.	Atlas-SNP
DLGAP5	9787	hgsc.bcm.edu	hg19	14	55650384	55650384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DLGAP5	NM_014750	exon3	c.A326T	p.Q109L	TCTCTCTGCTCTT	.	165.0	62.0	172.0	0.0	.	84	.	.	Atlas-SNP
PGF	5228	hgsc.bcm.edu	hg19	14	75412966	75412966	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PGF	NM_002632	exon6	c.G435A	p.K145K	CCTGCCCTTGGGT	.	67.0	27.0	66.0	0.0	.	23	.	.	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51860705	51860705	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DMXL2	NM_001174117	exon3	c.A264T	p.I88I	AGAATTTATGCCC	.	482.0	214.0	503.0	1.0	.	262	.	.	Atlas-SNP
DYX1C1	161582	hgsc.bcm.edu	hg19	15	55759146	55759146	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DYX1C1	NM_001033560	exon5	c.A619T	p.R207X	GATTTCTAGATGC	.	242.0	91.0	284.0	0.0	.	54	.	.	Atlas-SNP
C15orf39	56905	hgsc.bcm.edu	hg19	15	75501101	75501101	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	C15orf39	NM_015492	exon2	c.G2712A	p.Q904Q	GCGCCAGCTGCCG	.	52.0	22.0	29.0	0.0	.	64	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86122602	86122602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	AKAP13	NM_007200	exon7	c.G1303T	p.D435Y	CCCACAGACCAGG	.	143.0	56.0	179.0	0.0	.	394	.	.	Atlas-SNP
SV2B	9899	hgsc.bcm.edu	hg19	15	91769596	91769596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	SV2B	NM_014848	exon3	c.G103A	p.V35I	AGTGATGTCACCG	.	79.0	38.0	81.0	0.0	.	98	.	.	Atlas-SNP
TAT	6898	hgsc.bcm.edu	hg19	16	71602186	71602186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	TAT	NM_000353	exon12	c.G1226T	p.C409F	TCAAAGCACTGCA	.	92.0	40.0	89.0	0.0	.	80	.	.	Atlas-SNP
USP22	23326	hgsc.bcm.edu	hg19	17	20908264	20908264	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	USP22	NM_015276	exon11	c.G1362A	p.T454T	ACTGTCCGTGGGC	.	109.0	43.0	74.0	0.0	.	45	.	.	Atlas-SNP
SPATA32	124783	hgsc.bcm.edu	hg19	17	43332862	43332862	+	Silent	SNP	G	G	A	rs373812499		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	.	NM_152343	exon4	c.C687T	p.S229S	ATCTGAGGACAGG	.	103.0	51.0	89.0	0.0	.	.	.	.	Atlas-SNP
CA10	56934	hgsc.bcm.edu	hg19	17	49825104	49825104	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	CA10	NM_001082534	exon5	c.T354A	p.S118S	CCCTCCAGATATG	.	303.0	93.0	183.0	0.0	.	84	.	.	Atlas-SNP
ABCA8	10351	hgsc.bcm.edu	hg19	17	66865908	66865908	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ABCA8	NM_007168	exon36	c.G4524A	p.L1508L	AACCATCAGAGAG	.	395.0	107.0	283.0	0.0	.	213	.	.	Atlas-SNP
DOT1L	84444	hgsc.bcm.edu	hg19	19	2216983	2216983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DOT1L	NM_032482	exon21	c.C2438T	p.P813L	GCCTTCCCTACCA	.	120.0	53.0	104.0	0.0	.	205	.	.	Atlas-SNP
STAP2	55620	hgsc.bcm.edu	hg19	19	4325516	4325516	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	STAP2	NM_001013841	exon10	c.A856T	p.K286X	GCGGCTTGGGGCC	.	64.0	24.0	42.0	0.0	.	38	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9075725	9075725	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	MUC16	NM_024690	exon3	c.G11721A	p.L3907L	CGTATTCAGGGTC	.	148.0	72.0	115.0	0.0	.	4315	.	.	Atlas-SNP
OR7G3	390883	hgsc.bcm.edu	hg19	19	9236857	9236857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	OR7G3	NM_001001958	exon1	c.G770T	p.G257V	TACACCCCAAACC	.	183.0	91.0	192.0	0.0	.	41	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22940239	22940239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ZNF99	NM_001080409	exon4	c.A2472T	p.K824N	AAAAGCTTTACCA	.	29.0	13.0	24.0	0.0	.	273	.	.	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	hg19	19	53014421	53014421	+	Missense_Mutation	SNP	A	A	T	rs199506035	bycluster	TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	.	NM_001099694	exon6	c.A787T	p.I263L	TTTGATATATGTG	.	233.0	97.0	239.0	0.0	.	.	.	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	hg19	19	54310876	54310876	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	NLRP12	NM_144687	exon4	c.C2116C	p.L706L	CCGCTGCCAGATG	.	126.0	53.0	103.0	0.0	.	236	.	.	Atlas-SNP
ZNF17	7565	hgsc.bcm.edu	hg19	19	57929405	57929405	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ZNF17	NM_006959	exon2	c.A141G	p.V47V	CTCAGTAGGTAAG	.	109.0	46.0	124.0	0.0	.	49	.	.	Atlas-SNP
SRC	6714	hgsc.bcm.edu	hg19	20	36014520	36014520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	SRC	NM_005417	exon5	c.G293T	p.R98M	AGTCTAGGACGGA	.	108.0	48.0	83.0	0.0	.	52	.	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	41419871	41419871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	PTPRT	NM_007050	exon3	c.G450T	p.E150D	GGCGAGCTCTGCC	.	175.0	78.0	163.0	0.0	.	372	.	.	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	hg19	21	10969094	10969094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	TPTE	NM_199261	exon7	c.G154A	p.V52M	GTGACACCCGGGC	.	125.0	22.0	96.0	0.0	.	513	.	.	Atlas-SNP
GRIK1	2897	hgsc.bcm.edu	hg19	21	30927428	30927428	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	GRIK1	NM_000830	exon16	c.T2552A	p.F851Y	GCTACAAATACAG	.	76.0	37.0	72.0	0.0	.	293	.	.	Atlas-SNP
TOP3B	8940	hgsc.bcm.edu	hg19	22	22322015	22322015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	TOP3B	NM_003935	exon8	c.A812G	p.Q271R	AACATCTGTGCGA	.	72.0	32.0	56.0	0.0	.	107	.	.	Atlas-SNP
ENTHD1	150350	hgsc.bcm.edu	hg19	22	40283506	40283506	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ENTHD1	NM_152512	exon2	c.A247T	p.K83X	CATTCTTGATGAG	.	114.0	53.0	106.0	0.0	.	83	.	.	Atlas-SNP
SLC25A6	293	hgsc.bcm.edu	hg19	X	1508319	1508319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	SLC25A6	NM_001636	exon2	c.G413A	p.R138K	CGGGTTCTGGCGA	.	202.0	81.0	181.0	0.0	.	27	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765228	66765228	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	AR	NM_000044	exon1	c.A240G	p.Q80Q	GCAGCAAGAGACT	.	311.0	16.0	97.0	0.0	.	249	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765229	66765229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	AR	NM_000044	exon1	c.G241C	p.E81Q	CAGCAAGAGACTA	.	313.0	13.0	96.0	0.0	.	249	.	.	Atlas-SNP
MPP1	4354	hgsc.bcm.edu	hg19	X	154020561	154020561	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	MPP1	NM_002436	exon3	c.103-1G>A	.	TACAGCCTGCCAA	.	115.0	95.0	56.0	0.0	.	52	.	.	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	4130	4130	+	Missense_Mutation	SNP	C	C	T	rs201832206	alternate_allele	TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	.	ENST00000361390	exon1	c.C824T	p.T275M	TTCGAACAGCATA	.	79.0	8.0	18.0	0.0	.	.	.	A|0.996;G|0.004	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15047	15047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	.	ENST00000361789	exon1	c.G301A	p.G101S	GGGCGAGGCCTAT	.	138.0	35.0	20.0	0.0	.	.	.	.	Atlas-SNP
DYNC1I2	1781	hgsc.bcm.edu	hg19	2	172563798	172563799	+	In_Frame_Ins	INS	-	-	CCT	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	DYNC1I2	NM_001271786	exon4	c.282_283insCCT	p.V94delinsVP	.	.	269.0	91.0	277.0	0.0	.	43	.	.	Atlas-INDEL
OR1L3	26735	hgsc.bcm.edu	hg19	9	125437433	125437434	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	OR1L3	NM_001005234	exon1	c.24_25del	p.8_9del	.	.	73.0	25.0	101.0	0.0	.	51	.	.	Atlas-INDEL
LONP2	83752	hgsc.bcm.edu	hg19	16	48278525	48278525	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	LONP2	NM_031490	exon1	c.225delG	p.P75fs	.	.	33.0	14.0	43.0	0.0	.	63	.	.	Atlas-INDEL
MEF2C	4208	hgsc.bcm.edu	hg19	5	88056848	88056849	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	MEF2C_ENST00000424173,caecum,carcinoma,0,2	MEF2C	NM_001193347	exon6	c.413_414insA	p.I138fs	.	.	174.0	59.0	203.0	0.0	.	184	.	.	Atlas-INDEL
USP54	159195	hgsc.bcm.edu	hg19	10	75283430	75283448	+	Frame_Shift_Del	DEL	CGAAGTTCCTGTTCCTGCG	CGAAGTTCCTGTTCCTGCG	-	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	CGAAGTTCCTGTTCCTGCG	CGAAGTTCCTGTTCCTGCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	USP54	NM_152586	exon15	c.2256_2274del	p.752_758del	.	.	85.0	17.0	99.0	0.0	.	178	.	.	Atlas-INDEL
ZNF800	168850	hgsc.bcm.edu	hg19	7	127031567	127031569	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	ZNF800	NM_176814	exon2	c.44_46del	p.15_16del	.	.	116.0	47.0	116.0	0.0	.	78	.	.	Atlas-INDEL
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233709080	233709080	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	GIGYF2	NM_001103147	exon27	c.3163delC	p.H1055fs	.	.	108.0	50.0	107.0	0.0	.	288	.	.	Atlas-INDEL
GP1BA	2811	hgsc.bcm.edu	hg19	17	4837225	4837226	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	GP1BA	NM_000173	exon2	c.1326_1327insC	p.E442fs	.	.	38.0	11.0	56.0	0.0	.	53	.	.	Atlas-INDEL
UNC13C	440279	hgsc.bcm.edu	hg19	15	54306719	54306720	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.,2	UNC13C	NM_001080534	exon1	c.1619_1620insT	p.D540fs	.	.	146.0	62.0	167.0	0.0	.	674	.	.	Atlas-INDEL
MLL	4297	hgsc.bcm.edu	hg19	11	118343010	118343011	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	MLL	NM_001197104	exon3	c.1136_1137insA	p.A379fs	.	.	261.0	110.0	262.0	0.0	.	548	.	.	Atlas-INDEL
C2orf70	339778	hgsc.bcm.edu	hg19	2	26798930	26798930	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAW1-01A-11D-A40P-10	TCGA-DD-AAW1-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e922ce32-e6f6-497a-ae31-ae362055542d	7730846e-e3d4-44d3-a53c-47ab352eaf6e	.	C2orf70	NM_001105519	exon2	c.234delC	p.P78fs	.	.	123.0	45.0	121.0	0.0	.	26	.	.	Atlas-INDEL