Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm DNAJC16 23341 hgsc.bcm.edu hg19 1 15888720 15888720 + Missense_Mutation SNP C C G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . DNAJC16 NM_015291 exon9 c.C1238G p.T413S CAAACACTCAAGA . 127.0 46.0 135.0 0.0 . 59 . . Atlas-SNP SPEN 23013 hgsc.bcm.edu hg19 1 16199516 16199516 + Missense_Mutation SNP A A G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . SPEN NM_015001 exon2 c.A289G p.I97V GTTTCCATAGCAT . 155.0 72.0 149.0 0.0 . 374 . . Atlas-SNP PADI1 29943 hgsc.bcm.edu hg19 1 17559395 17559395 + Missense_Mutation SNP A A T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . PADI1 NM_013358 exon11 c.A1243T p.S415C GACGTCAGCCCGC . 54.0 21.0 76.0 0.0 . 77 . . Atlas-SNP LRRC8C 84230 hgsc.bcm.edu hg19 1 90178412 90178412 + Missense_Mutation SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . LRRC8C NM_032270 exon3 c.G283A p.E95K ACTGTGGAAATGA . 244.0 15.0 216.0 0.0 . 73 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103348775 103348775 + Missense_Mutation SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . COL11A1 NM_080629 exon64 c.C4987T p.P1663S TGTCTGGATAAAT . 89.0 46.0 87.0 0.0 . 972 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152084174 152084174 + Missense_Mutation SNP G G C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . TCHH NM_007113 exon3 c.C1519G p.L507V GCCTTAGTTGCTG . 37.0 8.0 33.0 0.0 . 275 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152084221 152084221 + Missense_Mutation SNP A A C rs202112040 TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . TCHH NM_007113 exon3 c.T1472G p.L491R TCCTCGAGCTTCA . 40.0 13.0 23.0 0.0 . 275 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152084224 152084224 + Missense_Mutation SNP T T C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . TCHH NM_007113 exon3 c.A1469G p.K490R TCGAGCTTCAGCC . 40.0 12.0 25.0 0.0 . 275 . . Atlas-SNP IVL 3713 hgsc.bcm.edu hg19 1 152883756 152883756 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . IVL NM_005547 exon2 c.C1483T p.Q495X CCAGAGCAGCAGG . 125.0 45.0 138.0 0.0 . 100 . . Atlas-SNP ATP8B2 57198 hgsc.bcm.edu hg19 1 154306627 154306627 + Missense_Mutation SNP A A C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . ATP8B2 NM_020452 exon10 c.A733C p.S245R AAATTCAGCGGAA . 124.0 43.0 129.0 0.0 . 158 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228475833 228475833 + Missense_Mutation SNP T T C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . OBSCN NM_001271223 exon42 c.T11170C p.C3724R CTGCGGTGTGAGC . 132.0 70.0 136.0 0.0 . 2142 . . Atlas-SNP PCNXL2 80003 hgsc.bcm.edu hg19 1 233270849 233270849 + Missense_Mutation SNP G G T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . PCNXL2 NM_014801 exon21 c.C3747A p.S1249R AGTGAAGCTCAAG . 225.0 97.0 265.0 1.0 . 204 . . Atlas-SNP RPS7 6201 hgsc.bcm.edu hg19 2 3624107 3624107 + Missense_Mutation SNP A A G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . RPS7 NM_001011 exon4 c.A178G p.I60V AAAGCTATCATAA . 385.0 199.0 393.0 0.0 . 13 . . Atlas-SNP TRABD2A 129293 hgsc.bcm.edu hg19 2 85049140 85049140 + Silent SNP G G C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . . NM_001080824 exon6 c.C1272G p.G424G GCTGTGGTGGGAA . 108.0 47.0 132.0 0.0 . . . . Atlas-SNP NFE2L2 4780 hgsc.bcm.edu hg19 2 178098862 178098862 + Missense_Mutation SNP T T G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . NFE2L2 NM_006164 exon2 c.A183C p.Q61H TTGGAGTTGTTCT . 61.0 14.0 94.0 0.0 . 225 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179435762 179435762 + Missense_Mutation SNP C C G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . TTN NM_001267550 exon326 c.G75097C p.D25033H CACCGTCATAGGT . 71.0 33.0 76.0 0.0 . 18412 . . Atlas-SNP GULP1 51454 hgsc.bcm.edu hg19 2 189449050 189449050 + Missense_Mutation SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . GULP1 NM_016315 exon10 c.C668T p.S223F CATTTTCTCCAAT . 267.0 114.0 243.0 0.0 . 35 . . Atlas-SNP SUMF1 285362 hgsc.bcm.edu hg19 3 4508802 4508802 + Missense_Mutation SNP G G T rs200789939 bycluster;by1000genomes;alternate_allele TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . SUMF1 NM_001164675 exon1 c.C128A p.A43E GACCCCGCGCCCG . 95.0 37.0 129.0 0.0 . 23 . G|0.999;A|0.001 Atlas-SNP CELSR3 1951 hgsc.bcm.edu hg19 3 48678931 48678931 + Missense_Mutation SNP A A G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . CELSR3 NM_001407 exon33 c.T8851C p.Y2951H GCCAGTAGGACAG . 104.0 36.0 122.0 0.0 . 237 . . Atlas-SNP FGFBP1 9982 hgsc.bcm.edu hg19 4 15937929 15937929 + Missense_Mutation SNP C C A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . FGFBP1 NM_005130 exon3 c.G327T p.E109D GACTCTCTCATCC . 39.0 18.0 95.0 0.0 . 26 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79340185 79340185 + Missense_Mutation SNP A A T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . FRAS1 NM_001166133 exon33 c.A4508T p.Y1503F TTGTCTACAACAT . 44.0 18.0 73.0 0.0 . 779 . . Atlas-SNP CDH9 1007 hgsc.bcm.edu hg19 5 26885790 26885790 + Silent SNP C C A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . CDH9 NM_016279 exon11 c.G1815T p.L605L AAGGATCAGGGCT . 206.0 98.0 188.0 0.0 . 305 . . Atlas-SNP SNX18 112574 hgsc.bcm.edu hg19 5 53839038 53839038 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . SNX18 NM_001102575 exon2 c.C1651T p.R551X AGTAGGCGACACG . 275.0 117.0 265.0 0.0 . 102 . . Atlas-SNP ZNF608 57507 hgsc.bcm.edu hg19 5 124080294 124080294 + Missense_Mutation SNP A A T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . ZNF608 NM_020747 exon1 c.T389A p.I130N CTGCTGATCTCGG . 74.0 45.0 84.0 0.0 . 117 . . Atlas-SNP PCDHB7 56129 hgsc.bcm.edu hg19 5 140554567 140554567 + Silent SNP G G C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . PCDHB7 NM_018940 exon1 c.G2151C p.A717A CAGGGCGGCCCCG . 142.0 62.0 139.0 0.0 . 231 . . Atlas-SNP MRS2 57380 hgsc.bcm.edu hg19 6 24412501 24412501 + Missense_Mutation SNP A A G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . MRS2 NM_020662 exon5 c.A466G p.N156D TATCGTAATTTAA . 205.0 98.0 223.0 0.0 . 31 . . Atlas-SNP HIST1H2AE 3012 hgsc.bcm.edu hg19 6 26217258 26217258 + Missense_Mutation SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . HIST1H2AE NM_021052 exon1 c.C56T p.S19F CGCGTTCTTCCAG . 139.0 59.0 141.0 0.0 . 25 . . Atlas-SNP TBX18 9096 hgsc.bcm.edu hg19 6 85446717 85446717 + Missense_Mutation SNP A A T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . TBX18 NM_001080508 exon8 c.T1510A p.S504T TGCTGGAGGGTGA . 115.0 55.0 111.0 0.0 . 131 . . Atlas-SNP BACH2 60468 hgsc.bcm.edu hg19 6 90661177 90661177 + Silent SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . BACH2 NM_021813 exon7 c.C648T p.T216T CTCCTTGGTGTCT . 77.0 31.0 104.0 0.0 . 224 . . Atlas-SNP EPHA7 2045 hgsc.bcm.edu hg19 6 94120371 94120371 + Missense_Mutation SNP A A G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . EPHA7 NM_004440 exon3 c.T680C p.L227S TCGACTAAAGAGG . 154.0 64.0 174.0 0.0 . 251 . . Atlas-SNP ANK1 286 hgsc.bcm.edu hg19 8 41550170 41550170 + Missense_Mutation SNP A A T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . ANK1 NM_001142446 exon32 c.T3977A p.I1326K ACCTCTATGTCCC . 79.0 10.0 46.0 0.0 . 497 . . Atlas-SNP KANK1 23189 hgsc.bcm.edu hg19 9 711611 711611 + Missense_Mutation SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . KANK1 NM_001256876 exon7 c.G845A p.R282Q AGGTGCGAACCAT . 41.0 29.0 95.0 0.0 . 231 . . Atlas-SNP SLC44A1 23446 hgsc.bcm.edu hg19 9 108126972 108126972 + Silent SNP A A C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . SLC44A1 NM_080546 exon10 c.A1224C p.A408A AGTGGCAGGAGCT . 88.0 81.0 143.0 0.0 . 61 . . Atlas-SNP ASTN2 23245 hgsc.bcm.edu hg19 9 119249699 119249699 + Missense_Mutation SNP C C A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . ASTN2 NM_014010 exon19 c.G3283T p.V1095F CAGGGACCTCTCC . 40.0 33.0 78.0 0.0 . 307 . . Atlas-SNP CPEB3 22849 hgsc.bcm.edu hg19 10 93904825 93904825 + Missense_Mutation SNP T T A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . CPEB3 NM_014912 exon5 c.A1240T p.S414C CATGGCTATCATC . 115.0 36.0 112.0 0.0 . 43 . . Atlas-SNP PIDD 55367 hgsc.bcm.edu hg19 11 802041 802041 + Missense_Mutation SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . PIDD NM_145887 exon7 c.G1226A p.R409H ACTTCACGGCAGC . 71.0 30.0 91.0 0.0 . 76 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1092675 1092675 + Silent SNP C C A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . MUC2 NM_002457 exon30 c.C4494A p.T1498T AACCACCACTCCC . 198.0 19.0 257.0 0.0 . 614 . . Atlas-SNP AMBRA1 55626 hgsc.bcm.edu hg19 11 46456546 46456546 + Missense_Mutation SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . AMBRA1 NM_001267782 exon15 c.G2683A p.D895N TGGCATCATTGTA . 105.0 50.0 101.0 0.0 . 201 . . Atlas-SNP FOLR4 390243 hgsc.bcm.edu hg19 11 94040366 94040366 + Silent SNP T T C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 FOLR4,NS,carcinoma,0,1 FOLR4 NM_001199206 exon3 c.T384C p.N128N TGTGAATGTGCCG . 104.0 50.0 112.0 0.0 . 31 . . Atlas-SNP DRD2 1813 hgsc.bcm.edu hg19 11 113288785 113288785 + Missense_Mutation SNP G G A rs201724929 TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . DRD2 NM_016574 exon3 c.C359T p.A120V ATGCTCGCCGTGC . 58.0 21.0 68.0 0.0 . 98 . . Atlas-SNP TARBP2 6895 hgsc.bcm.edu hg19 12 53899546 53899546 + Silent SNP C C G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . TARBP2 NM_134323 exon8 c.C855G p.G285G CCTGGGCTCCCTG . 25.0 21.0 69.0 0.0 . 35 . . Atlas-SNP ACACB 32 hgsc.bcm.edu hg19 12 109692040 109692040 + Missense_Mutation SNP A A G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . ACACB NM_001093 exon43 c.A6067G p.I2023V GTCCCTATCATCA . 66.0 52.0 132.0 0.0 . 330 . . Atlas-SNP RPGRIP1 57096 hgsc.bcm.edu hg19 14 21769132 21769132 + Missense_Mutation SNP A A T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . RPGRIP1 NM_020366 exon3 c.A226T p.T76S CTGAGGACCACCT . 86.0 17.0 126.0 0.0 . 213 . . Atlas-SNP CHD8 57680 hgsc.bcm.edu hg19 14 21896309 21896309 + Silent SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . CHD8 NM_001170629 exon3 c.G1320A p.S440S TCCCCCCGAATGA . 93.0 31.0 125.0 0.0 . 339 . . Atlas-SNP NRXN3 9369 hgsc.bcm.edu hg19 14 79434578 79434578 + Missense_Mutation SNP T T A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . NRXN3 NM_004796 exon11 c.T1912A p.S638T GTGGCCTCTCGAG . 103.0 66.0 124.0 0.0 . 342 . . Atlas-SNP SERPINA5 5104 hgsc.bcm.edu hg19 14 95053895 95053895 + Missense_Mutation SNP T T G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . SERPINA5 NM_000624 exon3 c.T196G p.F66V AGCATCTTCTTCT . 82.0 49.0 95.0 0.0 . 69 . . Atlas-SNP ARHGAP11A 9824 hgsc.bcm.edu hg19 15 32925232 32925232 + Silent SNP A A G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . ARHGAP11A NM_199357 exon9 c.A1158G p.V386V TCCTGTACTCATT . 154.0 72.0 134.0 0.0 . 84 . . Atlas-SNP TLN2 83660 hgsc.bcm.edu hg19 15 62990037 62990037 + Silent SNP G G T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . TLN2 NM_015059 exon12 c.G1443T p.G481G GGTTGGGCAGATG . 81.0 37.0 111.0 0.0 . 253 . . Atlas-SNP IGDCC4 57722 hgsc.bcm.edu hg19 15 65689263 65689263 + Silent SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . IGDCC4 NM_020962 exon6 c.G906A p.A302A GGGCTGCGCGTTG . 128.0 68.0 128.0 0.0 . 95 . . Atlas-SNP GOLGA6B 55889 hgsc.bcm.edu hg19 15 72955008 72955008 + Missense_Mutation SNP G G C rs71400917 TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 GOLGA6B,NS,malignant_melanoma,0,1 GOLGA6B NM_018652 exon11 c.G1263C p.E421D GGAGGAGAGGCTA . 66.0 3.0 53.0 0.0 . 30 . G|1.000;|0.000 Atlas-SNP AXIN1 8312 hgsc.bcm.edu hg19 16 360038 360038 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . AXIN1 NM_181050 exon4 c.C1051T p.Q351X GGTGCTGCTTACG . 48.0 39.0 81.0 0.0 . 290 . . Atlas-SNP SERPINF1 5176 hgsc.bcm.edu hg19 17 1678371 1678371 + Silent SNP T T C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . SERPINF1 NM_002615 exon6 c.T663C p.F221F AAAGTTTGACTCC . 43.0 35.0 100.0 0.0 . 31 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578268 7578268 + Missense_Mutation SNP A A C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 TP53_ENST00000545858,colon,carcinoma,-1,1 TP53 NM_000546 exon6 c.T581G p.L194R CGGATAAGATGCT . 117.0 105.0 183.0 1.0 . 33396 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7720679 7720679 + Silent SNP A A G rs375895814 TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 DNAH2,colon,carcinoma,0,1 DNAH2 NM_020877 exon64 c.A9966G p.G3322G CATGGGACCCTTC . 31.0 26.0 46.0 0.0 . 498 . . Atlas-SNP TNFRSF13B 23495 hgsc.bcm.edu hg19 17 16843680 16843680 + Silent SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . TNFRSF13B NM_012452 exon4 c.C591T p.P197P TGAGCGGGGCTGG . 41.0 4.0 121.0 0.0 . 34 . . Atlas-SNP PLCD3 113026 hgsc.bcm.edu hg19 17 43190626 43190626 + Splice_Site SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . PLCD3 NM_133373 exon14 c.1995-1G>A . CAGCACCTGTGGG . 42.0 18.0 49.0 0.0 . 78 . . Atlas-SNP SCRN2 90507 hgsc.bcm.edu hg19 17 45915690 45915690 + Silent SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . SCRN2 NM_138355 exon7 c.G1065A p.R355R GGTATGCCGACGA . 121.0 47.0 129.0 0.0 . 35 . . Atlas-SNP DCC 1630 hgsc.bcm.edu hg19 18 50731599 50731599 + Silent SNP G G C novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . DCC NM_005215 exon10 c.G1587C p.G529G TCCAGGGCCAGTA . 105.0 37.0 88.0 0.0 . 360 . . Atlas-SNP TNFRSF11A 8792 hgsc.bcm.edu hg19 18 60028929 60028929 + Silent SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . TNFRSF11A NM_001270949 exon7 c.G633A p.L211L TTACTTGCCCGGT . 160.0 75.0 175.0 0.0 . 51 . . Atlas-SNP PTBP1 5725 hgsc.bcm.edu hg19 19 804891 804891 + Silent SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . PTBP1 NM_031990 exon7 c.G669A p.Q223Q GTTCCAGGCCCTG . 69.0 34.0 103.0 0.0 . 43 . . Atlas-SNP EMR1 2015 hgsc.bcm.edu hg19 19 6896547 6896547 + Missense_Mutation SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . EMR1 NM_001256252 exon3 c.G233A p.C78Y TGCGATGCAAAGG . 104.0 49.0 104.0 0.0 . 153 . . Atlas-SNP PCP2 126006 hgsc.bcm.edu hg19 19 7697616 7697616 + Missense_Mutation SNP T T A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . PCP2 NM_174895 exon2 c.A152T p.Q51L GTGGTCTGGCCCG . 32.0 16.0 43.0 0.0 . 6 . . Atlas-SNP OLFM2 93145 hgsc.bcm.edu hg19 19 9968430 9968430 + Silent SNP G G A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . OLFM2 NM_058164 exon3 c.C321T p.L107L TGCCCGGAGCCGC . 119.0 60.0 103.0 0.0 . 42 . . Atlas-SNP ZNF765 91661 hgsc.bcm.edu hg19 19 53911921 53911921 + Silent SNP A A G novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . ZNF765 NM_001040185 exon4 c.A1113G p.T371T TTTTACATGCCAT . 125.0 46.0 118.0 0.0 . 61 . . Atlas-SNP DEFB123 245936 hgsc.bcm.edu hg19 20 30037860 30037860 + Silent SNP T T C rs377702716 TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 DEFB123,NS,carcinoma,0,2 DEFB123 NM_153324 exon2 c.T87C p.Y29Y TCTTTATGGCAAA . 99.0 40.0 85.0 0.0 . 7 . . Atlas-SNP COL18A1 80781 hgsc.bcm.edu hg19 21 46888354 46888354 + Missense_Mutation SNP C C T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . COL18A1 NM_030582 exon2 c.C845T p.T282I CAGCCACAGAGGG . 71.0 23.0 88.0 0.0 . 129 . . Atlas-SNP NCF4 4689 hgsc.bcm.edu hg19 22 37272068 37272068 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . NCF4 NM_013416 exon8 c.T1001A p.L334X CCCCCTTAGGGAC . 140.0 51.0 154.0 0.0 . 66 . . Atlas-SNP SUPT20HL1 100130302 hgsc.bcm.edu hg19 X 24381762 24381762 + Silent SNP C C T rs368897164 TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . . NM_001136234 exon1 c.C885T p.G295G GAAAGGCAGACCC . 269.0 229.0 292.0 0.0 . . . . Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 4139 4139 + Missense_Mutation SNP C C T rs368539747 TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . . ENST00000361390 exon1 c.C833T p.P278L CATACCCCCGATT . 50.0 45.0 12.0 0.0 . . . . Atlas-SNP RIMS2 9699 hgsc.bcm.edu hg19 8 104973332 104973332 + Frame_Shift_Del DEL A A - novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . RIMS2 NM_001100117 exon15 c.2740delG p.D914fs . . 178.0 142.0 132.0 0.0 . 1357 . . Atlas-INDEL CENPC1 1060 hgsc.bcm.edu hg19 4 68379975 68379976 + Frame_Shift_Ins INS - - T novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . CENPC1 NM_001812 exon8 c.1261_1262insA p.Q421fs . . 43.0 15.0 79.0 0.0 . 66 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74274521 74274524 + In_Frame_Del DEL AAGT AAGT - novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 AAGT AAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . ALB NM_000477 exon4 c.480_482del p.160_161del . . 62.0 22.0 119.0 0.0 . 132 . . Atlas-INDEL ODF1 4956 hgsc.bcm.edu hg19 8 103573034 103573042 + In_Frame_Del DEL CCCGTGCAG CCCGTGCAG - novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 CCCGTGCAG CCCGTGCAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 ODF1,NS,carcinoma,0,1 ODF1 NM_024410 exon2 c.674_682del p.225_228del . . 78.0 58.0 59.0 0.0 . 55 . . Atlas-INDEL ZNF793 390927 hgsc.bcm.edu hg19 19 38024289 38024289 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAVU-01A-11D-A40R-10 TCGA-DD-AAVU-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c522957e-6571-4b4e-9ab2-8726a74d13e6 ae0c3d36-3ce4-478c-9a80-7446e1da38b1 . ZNF793 NM_001013659 exon7 c.221delC p.P74fs . . 131.0 58.0 136.0 0.0 . 50 . . Atlas-INDEL