Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
C1orf158	93190	hgsc.bcm.edu	hg19	1	12820816	12820816	+	Missense_Mutation	SNP	G	G	A	rs140110943		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	C1orf158	NM_152290	exon4	c.G517A	p.A173T	TTGTGCGCTATGT	.	74.0	8.0	57.0	0.0	.	28	.	G|1.000;A|0.000	Atlas-SNP
NSUN4	387338	hgsc.bcm.edu	hg19	1	46827352	46827352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	NSUN4	NM_199044	exon6	c.A989G	p.N330S	TGGCCAATCAATA	.	103.0	28.0	121.0	0.0	.	26	.	.	Atlas-SNP
MRPL37	51253	hgsc.bcm.edu	hg19	1	54666136	54666136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	MRPL37	NM_016491	exon1	c.A220G	p.I74V	CGGCCGATCTTTC	.	164.0	51.0	124.0	0.0	.	36	.	.	Atlas-SNP
PRMT6	55170	hgsc.bcm.edu	hg19	1	107599340	107599340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	PRMT6	NM_018137	exon1	c.G3A	p.M1I	CAAGATGTCGCAG	.	156.0	51.0	146.0	0.0	.	55	.	.	Atlas-SNP
KPRP	448834	hgsc.bcm.edu	hg19	1	152732150	152732150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	KPRP	NM_001025231	exon2	c.C86A	p.P29H	AATCCCCCTTTGC	.	141.0	34.0	87.0	0.0	.	152	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153907290	153907290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	DENND4B	NM_014856	exon18	c.C2719G	p.Q907E	GCTGCTGCTGCTG	.	50.0	4.0	40.0	0.0	.	210	.	.	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	hg19	1	154321379	154321379	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ATP8B2	NM_020452	exon28	c.G3457C	p.G1153R	CGGGTTGGCCGCA	.	179.0	38.0	126.0	0.0	.	158	.	.	Atlas-SNP
CCT3	7203	hgsc.bcm.edu	hg19	1	156290762	156290762	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CCT3	NM_005998	exon7	c.T477C	p.S159S	AGTAATAGAGCTG	.	131.0	43.0	71.0	0.0	.	61	.	.	Atlas-SNP
CADM3	57863	hgsc.bcm.edu	hg19	1	159166162	159166162	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CADM3	NM_021189	exon7	c.A802C	p.T268P	ACACCAACTGCGA	.	149.0	45.0	98.0	0.0	.	118	.	.	Atlas-SNP
SUCO	51430	hgsc.bcm.edu	hg19	1	172547511	172547511	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	.	NM_014283	exon14	c.C1414T	p.L472L	CAGGAACTATTTG	.	120.0	7.0	59.0	0.0	.	.	.	.	Atlas-SNP
LAMC2	3918	hgsc.bcm.edu	hg19	1	183201974	183201974	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	LAMC2	NM_005562	exon14	c.A2202G	p.E734E	AAGTGAAGCTTCC	.	99.0	25.0	61.0	0.0	.	113	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185704070	185704070	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	HMCN1	NM_031935	exon1	c.T159A	p.Y53X	TATGTATGATGAT	.	240.0	63.0	130.0	0.0	.	797	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186082011	186082011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	HMCN1	NM_031935	exon72	c.A11057G	p.D3686G	TAGGTGATACAGC	.	127.0	40.0	95.0	0.0	.	797	.	.	Atlas-SNP
EPHX1	2052	hgsc.bcm.edu	hg19	1	226033008	226033008	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	EPHX1	NM_001136018	exon9	c.A1328C	p.Q443P	TCGCCCAGGACAT	.	63.0	7.0	39.0	0.0	.	57	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228525730	228525730	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	OBSCN	NM_001271223	exon78	c.T19757A	p.V6586E	AGTATGTGGAGGT	.	88.0	43.0	64.0	0.0	.	2142	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240601508	240601508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	FMN2,right_upper_lobe,carcinoma,0,1	FMN2	NM_020066	exon16	c.G5058T	p.E1686D	ACAAGAGAGGTAG	.	81.0	18.0	50.0	0.0	.	451	.	.	Atlas-SNP
STON1	11037	hgsc.bcm.edu	hg19	2	48822410	48822410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	STON1	NM_001198595	exon5	c.C2177T	p.P726L	AAGACCCAGATAA	.	100.0	34.0	99.0	0.0	.	100	.	.	Atlas-SNP
AFTPH	54812	hgsc.bcm.edu	hg19	2	64808325	64808325	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	AFTPH	NM_203437	exon8	c.T2457G	p.A819A	TCAAGCTAGTGGA	.	71.0	18.0	59.0	0.0	.	117	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	80835353	80835353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CTNNA2	NM_004389	exon17	c.A2340T	p.Q780H	CCTTCAACGAATT	.	65.0	32.0	52.0	0.0	.	462	.	.	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	hg19	2	116525977	116525977	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	DPP10	NM_001178034	exon13	c.C1230T	p.I410I	CCTCATCCAGGTA	.	81.0	25.0	59.0	0.0	.	415	.	.	Atlas-SNP
MAP3K2	10746	hgsc.bcm.edu	hg19	2	128096589	128096589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	MAP3K2	NM_006609	exon2	c.G42T	p.L14F	GACAGCCAAATCT	.	296.0	91.0	239.0	0.0	.	78	.	.	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	hg19	2	160050974	160050974	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	TANC1	NM_033394	exon17	c.G2949A	p.L983L	GAAGCTGGTGTGT	.	91.0	25.0	61.0	0.0	.	157	.	.	Atlas-SNP
KIAA1715	80856	hgsc.bcm.edu	hg19	2	176802102	176802102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	KIAA1715	NM_030650	exon12	c.G1024T	p.V342L	AAAGCACACTTCC	.	137.0	55.0	116.0	0.0	.	61	.	.	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098966	178098966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	NFE2L2,NS,carcinoma,0,2	NFE2L2	NM_006164	exon2	c.G79T	p.D27Y	CTATATCTTGCCT	.	39.0	18.0	39.0	0.0	.	225	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198260907	198260907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	SF3B1	NM_012433	exon23	c.G3412C	p.V1138L	CAGGAACTCTGTA	.	267.0	98.0	231.0	0.0	.	1038	.	.	Atlas-SNP
SP140	11262	hgsc.bcm.edu	hg19	2	231109774	231109774	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	SP140	NM_007237	exon6	c.A643T	p.S215C	GCACCCAGCCTAC	.	59.0	21.0	41.0	0.0	.	121	.	.	Atlas-SNP
CHRND	1144	hgsc.bcm.edu	hg19	2	233393032	233393032	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CHRND	NM_000751	exon4	c.C304G	p.R102G	GTCCTGCGCCTCC	.	65.0	24.0	64.0	0.0	.	67	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	121.0	48.0	93.0	1.0	.	4904	.	.	Atlas-SNP
ERC2	26059	hgsc.bcm.edu	hg19	3	55768826	55768826	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ERC2	NM_015576	exon14	c.C2679G	p.D893E	TAGTCGGTCTTTT	.	126.0	44.0	79.0	0.0	.	221	.	.	Atlas-SNP
TOMM70A	9868	hgsc.bcm.edu	hg19	3	100105787	100105787	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	TOMM70A	NM_014820	exon2	c.A360G	p.K120K	ATTGCCTTTATTC	.	124.0	38.0	107.0	0.0	.	65	.	.	Atlas-SNP
ARHGAP31	57514	hgsc.bcm.edu	hg19	3	119133155	119133155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ARHGAP31	NM_020754	exon12	c.G2379C	p.E793D	GGAGGAGTCAACT	.	103.0	43.0	82.0	0.0	.	175	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142278092	142278092	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ATR	NM_001184	exon8	c.1732+1G>T	.	TACTCACCTTGCA	.	177.0	59.0	144.0	0.0	.	285	.	.	Atlas-SNP
DHX15	1665	hgsc.bcm.edu	hg19	4	24531339	24531339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	DHX15	NM_001358	exon13	c.G2155A	p.V719I	ACTGAACCACCTG	.	141.0	40.0	147.0	0.0	.	69	.	.	Atlas-SNP
TBCK	93627	hgsc.bcm.edu	hg19	4	107133975	107133975	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	TBCK	NM_001163436	exon20	c.T1792A	p.S598T	TCTGAGAGAAGAC	.	406.0	126.0	344.0	0.0	.	89	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114276434	114276434	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ANK2	NM_001148	exon38	c.G6660A	p.E2220E	GATGGAGGGGACC	.	121.0	56.0	103.0	0.0	.	576	.	.	Atlas-SNP
MAP9	79884	hgsc.bcm.edu	hg19	4	156294546	156294546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	MAP9	NM_001039580	exon4	c.G223A	p.D75N	GAAAGTCATTCAT	.	67.0	29.0	69.0	0.0	.	79	.	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	hg19	5	33546183	33546183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ADAMTS12	NM_030955	exon22	c.C4427A	p.A1476D	CCAGTGGCCCAGT	.	292.0	87.0	254.0	0.0	.	464	.	.	Atlas-SNP
CATSPER3	347732	hgsc.bcm.edu	hg19	5	134332010	134332010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CATSPER3	NM_178019	exon3	c.G300T	p.M100I	GTCCATGAAGGTC	.	45.0	12.0	50.0	0.0	.	38	.	.	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	hg19	6	29911183	29911183	+	Missense_Mutation	SNP	A	A	C	rs72555400	bycluster	TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	HLA-A,rectum,carcinoma,0,1	HLA-A	NM_001242758	exon3	c.A482C	p.D161A	CGGCGGACATGGC	.	235.0	12.0	120.0	2.0	.	89	.	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	hg19	6	33145004	33145004	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	COL11A2	NM_080681	exon23	c.1714-2A>G	.	AGACCCTACATAC	.	132.0	72.0	69.0	0.0	.	124	.	.	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43274045	43274045	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CRIP3	NM_206922	exon6	c.A407T	p.K136M	ATCACCTTCTCAG	.	133.0	17.0	51.0	0.0	.	30	.	.	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43274046	43274046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CRIP3	NM_206922	exon6	c.A406G	p.K136E	TCACCTTCTCAGC	.	133.0	16.0	50.0	0.0	.	30	.	.	Atlas-SNP
GTPBP2	54676	hgsc.bcm.edu	hg19	6	43592642	43592642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	GTPBP2	NM_019096	exon6	c.G863T	p.S288I	TTGGCACTGACGA	.	140.0	30.0	69.0	0.0	.	39	.	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	hg19	7	2978336	2978336	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CARD11	NM_032415	exon7	c.C994T	p.Q332X	CTGCCTGGCGGGC	.	35.0	12.0	29.0	0.0	.	339	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82582023	82582023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	PCLO	NM_014510	exon5	c.C8246A	p.A2749D	GTAGAAGCAGAAA	.	132.0	49.0	87.0	0.0	.	1506	.	.	Atlas-SNP
ZNF746	155061	hgsc.bcm.edu	hg19	7	149172236	149172236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ZNF746	NM_001163474	exon7	c.A1177T	p.N393Y	TCGGGTTCAGGCC	.	69.0	22.0	61.0	0.0	.	68	.	.	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	hg19	8	145625402	145625402	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CPSF1	NM_013291	exon10	c.C1011G	p.I337M	GAGGGAGATGACC	.	147.0	26.0	100.0	0.0	.	92	.	.	Atlas-SNP
MAPKAP1	79109	hgsc.bcm.edu	hg19	9	128305415	128305415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	MAPKAP1	NM_001006618	exon7	c.T881C	p.V294A	TTGTCCACCTGAA	.	116.0	26.0	96.0	0.0	.	68	.	.	Atlas-SNP
ADAMTS13	11093	hgsc.bcm.edu	hg19	9	136308565	136308565	+	Missense_Mutation	SNP	G	G	T	rs369510827	alternate_allele	TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ADAMTS13	NM_139027	exon19	c.G2303T	p.R768L	CAGTGCGCTGCGT	.	129.0	32.0	101.0	0.0	.	113	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139906760	139906760	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ABCA2	NM_212533	exon33	c.G5346A	p.L1782L	GGCACGCAGGATG	.	65.0	28.0	61.0	0.0	.	113	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26312983	26312983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	MYO3A	NM_017433	exon9	c.T764C	p.L255P	CTGAGCTATGGTC	.	136.0	46.0	102.0	0.0	.	371	.	.	Atlas-SNP
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27356167	27356167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ANKRD26	NM_014915	exon10	c.A1126G	p.I376V	CAATAATATCAAT	.	77.0	32.0	49.0	0.0	.	179	.	.	Atlas-SNP
PALD1	27143	hgsc.bcm.edu	hg19	10	72324178	72324178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	.	NM_014431	exon19	c.A2321G	p.Y774C	TGCAGTACTTGGA	.	121.0	33.0	85.0	0.0	.	.	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	597422	597422	+	Missense_Mutation	SNP	T	T	G	rs377428073	alternate_allele	TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	PHRF1	NM_020901	exon8	c.T746G	p.V249G	AGGAGGTCTCCCT	.	72.0	23.0	67.0	0.0	.	188	.	.	Atlas-SNP
OR52A5	390054	hgsc.bcm.edu	hg19	11	5153167	5153167	+	Missense_Mutation	SNP	C	C	T	rs376219001	alternate_allele	TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	OR52A5	NM_001005160	exon1	c.G706A	p.A236T	ATCGTGCCTCCTT	.	123.0	54.0	115.0	0.0	.	80	.	.	Atlas-SNP
HBG2	3048	hgsc.bcm.edu	hg19	11	5275588	5275588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	HBG2	NM_000184	exon2	c.G249T	p.K83N	GGTGCCCTTGAGA	.	258.0	50.0	254.0	0.0	.	20	.	.	Atlas-SNP
PSMA1	5682	hgsc.bcm.edu	hg19	11	14539222	14539222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	PSMA1	NM_148976	exon5	c.A238G	p.I80V	CCGCAATTGAGAT	.	282.0	101.0	242.0	0.0	.	22	.	.	Atlas-SNP
P2RY6	5031	hgsc.bcm.edu	hg19	11	73008130	73008130	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	P2RY6	NM_176796	exon4	c.T567C	p.Y189Y	CCACTATATGCCC	.	17.0	9.0	20.0	0.0	.	45	.	.	Atlas-SNP
RPS3	6188	hgsc.bcm.edu	hg19	11	75115747	75115747	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	RPS3	NM_001260506	exon6	c.G618T	p.L206L	CATGCTGCCCTGG	.	138.0	38.0	144.0	0.0	.	20	.	.	Atlas-SNP
WNT1	7471	hgsc.bcm.edu	hg19	12	49375114	49375114	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	WNT1	NM_005430	exon4	c.G804T	p.R268R	TTCGCGGGCGGAG	.	95.0	29.0	86.0	0.0	.	13	.	.	Atlas-SNP
PRIM1	5557	hgsc.bcm.edu	hg19	12	57132217	57132217	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	PRIM1	NM_000946	exon12	c.1144+1G>A	.	ACCTTACCTCTGG	.	70.0	26.0	57.0	0.0	.	22	.	.	Atlas-SNP
MGAT4C	25834	hgsc.bcm.edu	hg19	12	86373973	86373973	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	MGAT4C	NM_013244	exon7	c.G531A	p.E177E	GTAATACTCCTCT	.	109.0	25.0	90.0	0.0	.	110	.	.	Atlas-SNP
PDS5B	23047	hgsc.bcm.edu	hg19	13	33241913	33241913	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	PDS5B	NM_015032	exon7	c.C637G	p.Q213E	AACAAGCAAGCAT	.	411.0	143.0	277.0	0.0	.	141	.	.	Atlas-SNP
SUGT1	10910	hgsc.bcm.edu	hg19	13	53232539	53232539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	SUGT1	NM_001130912	exon4	c.G193T	p.V65F	GTTGCTGTTGCTG	.	64.0	14.0	74.0	0.0	.	37	.	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	hg19	15	40943693	40943693	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CASC5	NM_170589	exon21	c.A6315G	p.Q2105Q	GGTACAAAAAGAG	.	196.0	100.0	117.0	0.0	.	269	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48760684	48760684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	FBN1	NM_000138	exon37	c.G4507A	p.V1503I	TGTTGACACAGTT	.	76.0	18.0	67.0	0.0	.	310	.	.	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	hg19	15	52611468	52611468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	MYO5A	NM_000259	exon38	c.A4948T	p.T1650S	TGGAGGTTCGCTT	.	104.0	37.0	72.0	0.0	.	145	.	.	Atlas-SNP
TUFM	7284	hgsc.bcm.edu	hg19	16	28857319	28857319	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	TUFM	NM_003321	exon2	c.A161T	p.Y54F	CGCACGTAAGTCT	.	88.0	36.0	71.0	0.0	.	33	.	.	Atlas-SNP
PLEKHG4	25894	hgsc.bcm.edu	hg19	16	67316522	67316522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	PLEKHG4	NM_001129728	exon10	c.C1370A	p.A457D	TGGAGGCCCGGGA	.	48.0	29.0	57.0	0.0	.	94	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88496242	88496242	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ZNF469	NM_001127464	exon1	c.G2364A	p.A788A	ACACGCGGGCTTG	.	72.0	4.0	74.0	0.0	.	121	.	.	Atlas-SNP
WDR16	146845	hgsc.bcm.edu	hg19	17	9497562	9497562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	WDR16	NM_145054	exon4	c.G460A	p.A154T	CCTGCAGCCGGCC	.	75.0	22.0	51.0	0.0	.	67	.	.	Atlas-SNP
TANC2	26115	hgsc.bcm.edu	hg19	17	61497385	61497385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	TANC2	NM_025185	exon25	c.C4042A	p.L1348M	GAGGACCTGAACG	.	81.0	47.0	50.0	0.0	.	266	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21422363	21422363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	LAMA3	NM_001127717	exon28	c.A3341T	p.Q1114L	AGAATCAAGTGAC	.	273.0	98.0	194.0	0.0	.	397	.	.	Atlas-SNP
HMHA1	23526	hgsc.bcm.edu	hg19	19	1068487	1068487	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	HMHA1	NM_001258328	exon2	c.C213T	p.G71G	CTCCGGCGTCAAG	.	118.0	41.0	119.0	0.0	.	78	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38976259	38976259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	RYR1	NM_001042723	exon34	c.G4964T	p.R1655L	CGGAGCGCCTGGA	.	36.0	7.0	27.0	0.0	.	708	.	.	Atlas-SNP
DYRK1B	9149	hgsc.bcm.edu	hg19	19	40319067	40319067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	DYRK1B	NM_006483	exon6	c.T677C	p.L226P	AGAAAGAGCAGTG	.	99.0	32.0	79.0	0.0	.	114	.	.	Atlas-SNP
FBL	2091	hgsc.bcm.edu	hg19	19	40331279	40331279	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	FBL	NM_001436	exon2	c.C159T	p.G53G	TCCACCGCCGCCG	.	121.0	5.0	86.0	0.0	.	37	.	.	Atlas-SNP
GPR4	2828	hgsc.bcm.edu	hg19	19	46094941	46094941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	GPR4	NM_005282	exon2	c.G184A	p.A62T	GGTCGGCGATGCT	.	91.0	38.0	72.0	0.0	.	54	.	.	Atlas-SNP
SIGLEC10	89790	hgsc.bcm.edu	hg19	19	51920112	51920112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	SIGLEC10	NM_001171157	exon3	c.G514A	p.E172K	GACATTCCTCAAA	.	185.0	12.0	122.0	0.0	.	112	.	.	Atlas-SNP
FPR3	2359	hgsc.bcm.edu	hg19	19	52327369	52327369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	FPR3	NM_002030	exon2	c.G368A	p.R123H	TGGACCGCTGTAT	.	99.0	26.0	109.0	0.0	.	66	.	.	Atlas-SNP
PDYN	5173	hgsc.bcm.edu	hg19	20	1961381	1961381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	PDYN	NM_001190898	exon4	c.A353G	p.K118R	TTCTCCTTTGTTG	.	148.0	41.0	82.0	0.0	.	74	.	.	Atlas-SNP
SLX4IP	128710	hgsc.bcm.edu	hg19	20	10602024	10602024	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	.	NM_001009608	exon7	c.T468C	p.P156P	ACTTCCTCCCAGT	.	179.0	86.0	83.0	0.0	.	.	.	.	Atlas-SNP
NANP	140838	hgsc.bcm.edu	hg19	20	25596729	25596729	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	NANP	NM_152667	exon2	c.C579G	p.T193T	GATGTCGGTTTCT	.	122.0	24.0	65.0	0.0	.	10	.	.	Atlas-SNP
WFDC3	140686	hgsc.bcm.edu	hg19	20	44417610	44417610	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	WFDC3	NM_080614	exon3	c.C171T	p.C57C	TGTGGTGCAGCAC	.	95.0	18.0	57.0	0.0	.	18	.	.	Atlas-SNP
CRYAA	1409	hgsc.bcm.edu	hg19	21	44589306	44589306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CRYAA	NM_000394	exon1	c.G97A	p.E33K	CTTTTTGAGTATG	.	58.0	13.0	44.0	0.0	.	23	.	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	hg19	22	29885648	29885648	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	NEFH	NM_021076	exon4	c.A2019G	p.E673E	GGCAGAAGCAAAG	.	353.0	18.0	255.0	0.0	.	178	.	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	hg19	22	29885651	29885651	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	NEFH	NM_021076	exon4	c.A2022C	p.A674A	AGAAGCAAAGTCC	.	358.0	19.0	264.0	0.0	.	178	.	.	Atlas-SNP
TRO	7216	hgsc.bcm.edu	hg19	X	54957051	54957051	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	TRO	NM_001039705	exon12	c.T3894C	p.S1298S	TGCTAGTTTCGGC	.	50.0	35.0	32.0	0.0	.	246	.	.	Atlas-SNP
CXCR3	2833	hgsc.bcm.edu	hg19	X	70836725	70836725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	CXCR3	NM_001142797	exon2	c.C738A	p.N246K	GGTGGCGTTGAGG	.	80.0	59.0	81.0	0.0	.	57	.	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	hg19	X	73963704	73963704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	KIAA2022	NM_001008537	exon3	c.C688A	p.P230T	GAGCCGGATCCTC	.	104.0	66.0	96.0	0.0	.	262	.	.	Atlas-SNP
KRTAP10-7	386675	hgsc.bcm.edu	hg19	21	46020873	46020874	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	KRTAP10-7	NM_198689	exon2	c.336_337del	p.112_113del	.	.	52.0	11.0	42.0	0.0	.	41	.	.	Atlas-INDEL
ZCRB1	85437	hgsc.bcm.edu	hg19	12	42707501	42707502	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ZCRB1	NM_033114	exon7	c.513_514del	p.171_172del	.	.	116.0	43.0	84.0	0.0	.	20	.	.	Atlas-INDEL
DPP7	29952	hgsc.bcm.edu	hg19	9	140008389	140008402	+	Frame_Shift_Del	DEL	AAGTCGGCCAGGGC	AAGTCGGCCAGGGC	-	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	AAGTCGGCCAGGGC	AAGTCGGCCAGGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	DPP7	NM_013379	exon4	c.401_414del	p.134_138del	.	.	40.0	11.0	54.0	0.0	.	22	.	.	Atlas-INDEL
ARID2	196528	hgsc.bcm.edu	hg19	12	46244346	46244347	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ARID2	NM_152641	exon15	c.2439_2440del	p.813_814del	.	.	110.0	35.0	90.0	0.0	.	311	.	.	Atlas-INDEL
RTEL1	51750	hgsc.bcm.edu	hg19	20	62316913	62316928	+	Frame_Shift_Del	DEL	GTTCCCCAGCAGGGCT	GTTCCCCAGCAGGGCT	-	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	GTTCCCCAGCAGGGCT	GTTCCCCAGCAGGGCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	RTEL1	NM_032957	exon15	c.1300_1315del	p.434_439del	.	.	102.0	15.0	61.0	0.0	.	114	.	.	Atlas-INDEL
ITGAM	3684	hgsc.bcm.edu	hg19	16	31289337	31289337	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	ITGAM	NM_000632	exon12	c.1262delT	p.L421fs	.	.	126.0	41.0	76.0	0.0	.	137	.	.	Atlas-INDEL
BRD7	29117	hgsc.bcm.edu	hg19	16	50388735	50388736	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	BRD7	NM_013263	exon3	c.357_358insA	p.K119fs	.	.	161.0	70.0	175.0	0.0	.	61	.	.	Atlas-INDEL
HNRNPA2B1	3181	hgsc.bcm.edu	hg19	7	26232938	26232940	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	HNRNPA2B1	NM_031243	exon10	c.932_934del	p.311_312del	.	.	93.0	33.0	89.0	0.0	.	70	.	.	Atlas-INDEL
SMTNL1	219537	hgsc.bcm.edu	hg19	11	57310839	57310841	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-DD-AAEH-01A-11D-A40R-10	TCGA-DD-AAEH-10A-01D-A40U-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fa21884c-96c0-4146-a5fe-65cade5f3658	3c6c79fc-5876-4247-8e0c-edba801ceb16	.	SMTNL1	NM_001105565	exon1	c.723_725del	p.241_242del	.	.	235.0	36.0	187.0	0.0	.	68	.	.	Atlas-INDEL