Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
VWA1	64856	hgsc.bcm.edu	hg19	1	1372593	1372593	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	VWA1	NM_022834	exon2	c.C360T	p.A120A	CTATGCCAAGGAA	.	90.0	53.0	106.0	0.0	.	15	.	.	Atlas-SNP
EXOSC10	5394	hgsc.bcm.edu	hg19	1	11128719	11128719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	EXOSC10	NM_001001998	exon23	c.C2533A	p.Q845K	GGGTCTGTTTATT	.	143.0	77.0	133.0	0.0	.	59	.	.	Atlas-SNP
KIF17	57576	hgsc.bcm.edu	hg19	1	21016719	21016719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	KIF17	NM_001122819	exon7	c.G1343A	p.R448K	GACAGCCTGACGT	.	134.0	76.0	89.0	0.0	.	130	.	.	Atlas-SNP
HCRTR1	3061	hgsc.bcm.edu	hg19	1	32084909	32084909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	HCRTR1	NM_001525	exon3	c.A116G	p.Y39C	GCGATTATCTGTA	.	71.0	22.0	62.0	0.0	.	20	.	.	Atlas-SNP
DMRTA2	63950	hgsc.bcm.edu	hg19	1	50886996	50886996	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	DMRTA2	NM_032110	exon2	c.G213A	p.A71A	ACAGCGCGCGCAC	.	96.0	47.0	91.0	0.0	.	17	.	.	Atlas-SNP
CDCP2	200008	hgsc.bcm.edu	hg19	1	54618578	54618578	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	CDCP2	NM_201546	exon1	c.G18C	p.G6G	GCAAGCCCCCCAC	.	62.0	11.0	51.0	0.0	.	52	.	.	Atlas-SNP
CYP2J2	1573	hgsc.bcm.edu	hg19	1	60377391	60377391	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	CYP2J2	NM_000775	exon4	c.C573T	p.I191I	GCAAATGATATTG	.	107.0	17.0	122.0	0.0	.	34	.	.	Atlas-SNP
SSX2IP	117178	hgsc.bcm.edu	hg19	1	85116058	85116058	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SSX2IP	NM_001166417	exon14	c.A1657T	p.I553L	CAGATATGCAGGA	.	81.0	32.0	92.0	0.0	.	53	.	.	Atlas-SNP
PSMA5	5686	hgsc.bcm.edu	hg19	1	109957891	109957891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	PSMA5	NM_002790	exon3	c.T191C	p.I64T	TTCTCAATGCTGC	.	66.0	30.0	67.0	0.0	.	14	.	.	Atlas-SNP
RHOC	389	hgsc.bcm.edu	hg19	1	113245243	113245243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	RHOC	NM_001042679	exon5	c.A350G	p.N117S	TTCTTATTCCCCA	.	81.0	40.0	66.0	0.0	.	15	.	.	Atlas-SNP
LCE2B	26239	hgsc.bcm.edu	hg19	1	152659435	152659435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	LCE2B	NM_014357	exon2	c.C116T	p.P39L	CAGCTCCATGTTC	.	263.0	25.0	147.0	0.0	.	40	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158621155	158621155	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SPTA1	NM_003126	exon25	c.3477+2T>A	.	TTAGTTACCTGCC	.	200.0	33.0	115.0	0.0	.	720	.	.	Atlas-SNP
OR10J3	441911	hgsc.bcm.edu	hg19	1	159283710	159283710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	OR10J3,NS,carcinoma,0,1	OR10J3	NM_001004467	exon1	c.C740T	p.T247I	ACCACTGTGAGGT	.	136.0	20.0	70.0	0.0	.	86	.	.	Atlas-SNP
GPR161	23432	hgsc.bcm.edu	hg19	1	168056873	168056873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	GPR161	NM_001267609	exon6	c.C1334A	p.P445H	CTCTTGGGTGGGC	.	185.0	75.0	83.0	0.0	.	56	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	hg19	1	175129958	175129958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	KIAA0040	NM_001162895	exon3	c.G192C	p.K64N	CTTGTTCTTCTCT	.	87.0	5.0	80.0	0.0	.	2	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	hg19	1	175348809	175348809	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	TNR	NM_003285	exon9	c.G1842A	p.W614X	GTTATCCCACTCG	.	141.0	21.0	75.0	0.0	.	399	.	.	Atlas-SNP
PTPN14	5784	hgsc.bcm.edu	hg19	1	214585026	214585026	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	PTPN14	NM_005401	exon6	c.510+1G>A	.	CACTTACCATAGG	.	832.0	106.0	458.0	0.0	.	168	.	.	Atlas-SNP
OR2G3	81469	hgsc.bcm.edu	hg19	1	247769166	247769166	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	OR2G3	NM_001001914	exon1	c.T279G	p.T93T	GATCACTTACGGT	.	178.0	48.0	107.0	0.0	.	108	.	.	Atlas-SNP
OR2T10	127069	hgsc.bcm.edu	hg19	1	248756758	248756758	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	OR2T10	NM_001004693	exon1	c.C312T	p.Y104Y	CTGCAGGTAGAAG	.	209.0	27.0	164.0	0.0	.	58	.	.	Atlas-SNP
RASGRP3	25780	hgsc.bcm.edu	hg19	2	33764196	33764196	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	RASGRP3	NM_170672	exon13	c.G1197A	p.V399V	GCCTGTGGTACCC	.	299.0	145.0	331.0	0.0	.	87	.	.	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	hg19	2	74776519	74776519	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	LOXL3	NM_032603	exon4	c.G669A	p.K223K	GACCCTCTTTTCG	.	73.0	10.0	61.0	0.0	.	73	.	.	Atlas-SNP
EPB41L5	57669	hgsc.bcm.edu	hg19	2	120834878	120834878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	EPB41L5	NM_020909	exon9	c.A700G	p.M234V	GTTGATATGCATG	.	411.0	265.0	489.0	1.0	.	98	.	.	Atlas-SNP
CCDC74B	91409	hgsc.bcm.edu	hg19	2	130897517	130897517	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	CCDC74B	NM_207310	exon7	c.C954T	p.D318D	TTCTTGGTCCCTG	.	141.0	31.0	185.0	0.0	.	27	.	.	Atlas-SNP
ZEB2	9839	hgsc.bcm.edu	hg19	2	145156639	145156639	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ZEB2	NM_014795	exon8	c.C2115T	p.S705S	GGATGGGGACCTG	.	125.0	41.0	143.0	0.0	.	218	.	.	Atlas-SNP
SLC11A1	6556	hgsc.bcm.edu	hg19	2	219249062	219249062	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SLC11A1	NM_000578	exon3	c.C247T	p.Q83X	GATCTTCAGGCTG	.	100.0	11.0	86.0	0.0	.	41	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222347320	222347320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	EPHA4_ENST00000281821,colon,carcinoma,0,2	EPHA4	NM_004438	exon5	c.G1070A	p.R357H	TCCTGGCGGCCAC	.	111.0	28.0	88.0	1.0	.	263	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222436897	222436897	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	EPHA4	NM_004438	exon1	c.G72A	p.R24R	GTATACCCTGGAA	.	118.0	47.0	75.0	0.0	.	263	.	.	Atlas-SNP
PPP1R7	5510	hgsc.bcm.edu	hg19	2	242092994	242092994	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	PPP1R7	NM_002712	exon2	c.G156C	p.E52D	TGGGGAGGAGCGG	.	79.0	33.0	49.0	0.0	.	35	.	.	Atlas-SNP
SETMAR	6419	hgsc.bcm.edu	hg19	3	4354904	4354904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SETMAR	NM_001243723	exon2	c.C479T	p.P160L	TTATACCGAAAGG	.	79.0	28.0	72.0	0.0	.	30	.	.	Atlas-SNP
CCDC80	151887	hgsc.bcm.edu	hg19	3	112324389	112324389	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	CCDC80	NM_199511	exon8	c.G2728C	p.G910R	GCATCCCCAGTGA	.	132.0	28.0	111.0	0.0	.	100	.	.	Atlas-SNP
C3orf30	152405	hgsc.bcm.edu	hg19	3	118867141	118867141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	C3orf30	NM_152539	exon2	c.G1513A	p.E505K	TACATGGAAAAAC	.	477.0	171.0	393.0	1.0	.	64	.	.	Atlas-SNP
CD80	941	hgsc.bcm.edu	hg19	3	119263423	119263423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	CD80	NM_005191	exon3	c.T392C	p.L131P	TCAGCCAGGTGTT	.	102.0	37.0	106.0	0.0	.	35	.	.	Atlas-SNP
TBC1D19	55296	hgsc.bcm.edu	hg19	4	26719629	26719629	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	TBC1D19	NM_018317	exon14	c.A1029G	p.S343S	AAAATCATACATA	.	42.0	17.0	64.0	0.0	.	53	.	.	Atlas-SNP
MMRN1	22915	hgsc.bcm.edu	hg19	4	90856478	90856478	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	MMRN1	NM_007351	exon6	c.A1647G	p.L549L	TACTTTACATGAA	.	74.0	72.0	163.0	0.0	.	174	.	.	Atlas-SNP
SLC6A19	340024	hgsc.bcm.edu	hg19	5	1219041	1219041	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SLC6A19	NM_001003841	exon9	c.C1197G	p.A399A	CCTGGCCTTCATC	.	98.0	10.0	37.0	0.0	.	99	.	.	Atlas-SNP
HMGCR	3156	hgsc.bcm.edu	hg19	5	74646733	74646733	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	HMGCR	NM_001130996	exon9	c.A900T	p.R300S	CAAGAGAATTGAA	.	95.0	17.0	119.0	0.0	.	53	.	.	Atlas-SNP
DDX46	9879	hgsc.bcm.edu	hg19	5	134121267	134121267	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	DDX46	NM_014829	exon11	c.C1455T	p.I485I	AGGAATCAGTGAG	.	93.0	18.0	89.0	0.0	.	77	.	.	Atlas-SNP
PCDHGA11	56105	hgsc.bcm.edu	hg19	5	140802419	140802419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	PCDHGA11	NM_032091	exon1	c.C1625T	p.P542L	ACCCGCCCCTCAG	.	115.0	25.0	114.0	0.0	.	128	.	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	hg19	5	148408005	148408005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SH3TC2	NM_024577	exon11	c.G1290T	p.E430D	GAGGAGCTCCTCC	.	45.0	21.0	60.0	0.0	.	178	.	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157222615	157222615	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ARID1B	NM_020732	exon4	c.C1882T	p.Q628X	CAGGCGCAGTATC	.	33.0	10.0	35.0	0.0	.	320	.	.	Atlas-SNP
SYNJ2	8871	hgsc.bcm.edu	hg19	6	158490577	158490577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SYNJ2	NM_003898	exon14	c.G1812T	p.K604N	CAACAAGAAGATG	.	53.0	30.0	53.0	0.0	.	111	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12383827	12383827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	VWDE	NM_001135924	exon21	c.G4072A	p.D1358N	CTTCATCACAGGT	.	326.0	60.0	289.0	0.0	.	123	.	.	Atlas-SNP
ANKMY2	57037	hgsc.bcm.edu	hg19	7	16644410	16644410	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ANKMY2	NM_020319	exon8	c.A947T	p.D316V	TCCACATCCACAA	.	189.0	75.0	154.0	0.0	.	46	.	.	Atlas-SNP
MPP6	51678	hgsc.bcm.edu	hg19	7	24718945	24718945	+	Missense_Mutation	SNP	A	A	G	rs74407305	bycluster;alternate_allele	TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	MPP6	NM_016447	exon11	c.A1310G	p.N437S	ATGTCAACCCACA	.	124.0	60.0	102.0	0.0	.	62	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	83095918	83095918	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SEMA3E	NM_012431	exon5	c.337-1G>T	.	TTCACCCTAAAGC	.	83.0	34.0	78.0	0.0	.	125	.	.	Atlas-SNP
SLC12A9	56996	hgsc.bcm.edu	hg19	7	100454563	100454563	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SLC12A9	NM_001267812	exon5	c.G522A	p.L174L	CCTGCTGCTGGGC	.	64.0	12.0	29.0	0.0	.	81	.	.	Atlas-SNP
ZDHHC2	51201	hgsc.bcm.edu	hg19	8	17043874	17043874	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ZDHHC2	NM_016353	exon3	c.A192G	p.A64A	TTTTGCAATGTTT	.	102.0	95.0	194.0	0.0	.	25	.	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41798614	41798614	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	.	NM_001099412	exon16	c.C2785T	p.Q929X	CGTCCTGGCTTGG	.	83.0	34.0	63.0	0.0	.	.	.	.	Atlas-SNP
PPP1R16A	84988	hgsc.bcm.edu	hg19	8	145724197	145724197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	PPP1R16A	NM_032902	exon2	c.G304A	p.E102K	GCCAACGAGGACG	.	65.0	10.0	48.0	0.0	.	25	.	.	Atlas-SNP
ZBTB5	9925	hgsc.bcm.edu	hg19	9	37441538	37441538	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ZBTB5	NM_014872	exon2	c.T1011C	p.P337P	AGGCTCAGGTGAG	.	28.0	18.0	41.0	0.0	.	43	.	.	Atlas-SNP
SPATA31C1	441452	hgsc.bcm.edu	hg19	9	90536200	90536200	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	.	NM_001145124	exon4	c.G1378T	p.E460X	CAACTGGAGCAAT	.	239.0	112.0	222.0	0.0	.	.	.	.	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	hg19	9	119115123	119115123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	PAPPA	NM_002581	exon16	c.A4103G	p.K1368R	AGCACAAGGTGGG	.	97.0	23.0	79.0	0.0	.	243	.	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138660719	138660719	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	KCNT1,NS,neuroblastoma,0,1	KCNT1	NM_020822	exon15	c.C1446T	p.A482A	CTTCGCCCCCAAC	.	53.0	17.0	38.0	0.0	.	139	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139907958	139907958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ABCA2	NM_212533	exon29	c.G4595A	p.R1532H	TTGCCACGGGGCT	.	50.0	28.0	42.0	0.0	.	113	.	.	Atlas-SNP
BTRC	8945	hgsc.bcm.edu	hg19	10	103239157	103239157	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	BTRC	NM_033637	exon4	c.C267G	p.N89K	CTTAAACCAAGAA	.	93.0	20.0	95.0	0.0	.	64	.	.	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	117075138	117075138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ATRNL1	NM_207303	exon18	c.T2929A	p.S977T	GGTTCTTCACGGG	.	75.0	37.0	75.0	0.0	.	219	.	.	Atlas-SNP
OR52A5	390054	hgsc.bcm.edu	hg19	11	5153870	5153870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	OR52A5	NM_001005160	exon1	c.G3T	p.M1I	TGTCGGCATGATT	.	85.0	21.0	89.0	0.0	.	80	.	.	Atlas-SNP
SPTY2D1	144108	hgsc.bcm.edu	hg19	11	18636133	18636133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SPTY2D1	NM_194285	exon3	c.T1688A	p.L563Q	CCAGATAGGGGAG	.	73.0	27.0	84.0	0.0	.	72	.	.	Atlas-SNP
OR4C12	283093	hgsc.bcm.edu	hg19	11	50003316	50003316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	OR4C12	NM_001005270	exon1	c.A722G	p.H241R	ATGATGTGAGAAA	.	60.0	29.0	88.0	0.0	.	82	.	.	Atlas-SNP
OR8K3	219473	hgsc.bcm.edu	hg19	11	56086555	56086555	+	Missense_Mutation	SNP	A	A	T	rs139467696	bycluster;alternate_allele	TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	OR8K3	NM_001005202	exon1	c.A773T	p.Y258F	TCATGTACGTGCA	.	102.0	27.0	95.0	0.0	.	92	.	A|0.999;G|0.001	Atlas-SNP
CLP1	10978	hgsc.bcm.edu	hg19	11	57427365	57427365	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	CLP1	NM_006831	exon2	c.G417A	p.V139V	CGCAGTGCGTTTG	.	100.0	42.0	94.0	0.0	.	40	.	.	Atlas-SNP
SCGB1D2	10647	hgsc.bcm.edu	hg19	11	62012145	62012145	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SCGB1D2	NM_006551	exon3	c.A247C	p.K83Q	TAGGTGAAAATAT	.	43.0	16.0	34.0	0.0	.	11	.	.	Atlas-SNP
NXF1	10482	hgsc.bcm.edu	hg19	11	62563804	62563804	+	Nonsense_Mutation	SNP	C	C	A	rs367975743	alternate_allele	TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	NXF1	NM_006362	exon15	c.G1300T	p.E434X	AATACTCGGCTAA	.	129.0	63.0	144.0	0.0	.	67	.	.	Atlas-SNP
SHANK2	22941	hgsc.bcm.edu	hg19	11	70333713	70333713	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	SHANK2	NM_133266	exon10	c.C921T	p.P307P	GGACGGGGGCACA	.	63.0	27.0	114.0	0.0	.	340	.	.	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73768566	73768566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	C2CD3_ENST00000334126,colon,carcinoma,0,2	C2CD3	NM_015531	exon25	c.G4975A	p.V1659I	TCGATACTTTCCG	.	54.0	50.0	96.0	0.0	.	288	.	.	Atlas-SNP
MRPS35	60488	hgsc.bcm.edu	hg19	12	27872748	27872748	+	Missense_Mutation	SNP	A	A	G	rs370001683	alternate_allele	TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	MRPS35	NM_001190864	exon4	c.A329G	p.N110S	TTCCCAATTTTCT	.	29.0	11.0	36.0	0.0	.	26	.	.	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	hg19	12	52779057	52779057	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	KRT84	NM_033045	exon1	c.C313G	p.L105V	AGCCCAGACCAAC	.	91.0	42.0	102.0	0.0	.	61	.	.	Atlas-SNP
TMPO	7112	hgsc.bcm.edu	hg19	12	98921777	98921777	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	TMPO	NM_003276	exon2	c.T393G	p.P131P	GAATCCTGGTCCT	.	103.0	41.0	113.0	0.0	.	111	.	.	Atlas-SNP
VSIG10	54621	hgsc.bcm.edu	hg19	12	118506351	118506351	+	Silent	SNP	C	C	T	rs373328738		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	VSIG10	NM_019086	exon8	c.G1398A	p.E466E	CTCCTCCTCTTCC	.	117.0	6.0	78.0	0.0	.	41	.	.	Atlas-SNP
CCDC60	160777	hgsc.bcm.edu	hg19	12	119909909	119909909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	CCDC60	NM_178499	exon3	c.G281A	p.R94K	AGGAAAGAAATAA	.	82.0	32.0	134.0	0.0	.	84	.	.	Atlas-SNP
TMEM132B	114795	hgsc.bcm.edu	hg19	12	125900204	125900204	+	Missense_Mutation	SNP	C	C	T	rs372738030	alternate_allele	TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	TMEM132B	NM_052907	exon3	c.C1072T	p.R358C	GGCCATCGCCCGG	.	262.0	90.0	205.0	0.0	.	207	.	.	Atlas-SNP
RAB2B	84932	hgsc.bcm.edu	hg19	14	21943061	21943061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	RAB2B	NM_032846	exon3	c.G151A	p.D51N	TTCCATCAATGTT	.	121.0	9.0	42.0	0.0	.	19	.	.	Atlas-SNP
RPS6KA5	9252	hgsc.bcm.edu	hg19	14	91338567	91338567	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	RPS6KA5_ENST00000261991,colon,carcinoma,0,2	RPS6KA5	NM_004755	exon17	c.G2260T	p.E754X	GCGTCTCGGTACT	.	63.0	57.0	143.0	0.0	.	135	.	.	Atlas-SNP
IREB2	3658	hgsc.bcm.edu	hg19	15	78778141	78778141	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	IREB2	NM_004136	exon13	c.C1668T	p.Y556Y	ACATTACCTCAGT	.	128.0	22.0	76.0	0.0	.	106	.	.	Atlas-SNP
PLIN1	5346	hgsc.bcm.edu	hg19	15	90210270	90210270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	PLIN1	NM_001145311	exon8	c.C1106T	p.P369L	GGGGCTGGTGTGA	.	155.0	59.0	110.0	0.0	.	36	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	396164	396164	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	AXIN1	NM_181050	exon2	c.G862T	p.E288X	TGCCTTCGCTGTA	.	36.0	35.0	28.0	0.0	.	290	.	.	Atlas-SNP
KIF22	3835	hgsc.bcm.edu	hg19	16	29816289	29816289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	KIF22	NM_007317	exon12	c.G1832T	p.G611V	GCATTGGCCCGAA	.	51.0	26.0	42.0	0.0	.	29	.	.	Atlas-SNP
BRD7	29117	hgsc.bcm.edu	hg19	16	50354273	50354273	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	BRD7	NM_001173984	exon15	c.G1645T	p.E549X	TGGTCTCATCAAG	.	27.0	27.0	44.0	0.0	.	61	.	.	Atlas-SNP
ANKFN1	162282	hgsc.bcm.edu	hg19	17	54543824	54543824	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ANKFN1	NM_153228	exon14	c.A1674T	p.S558S	TTATTCATTTTTT	.	161.0	78.0	133.0	0.0	.	115	.	.	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	hg19	17	73910864	73910864	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	FBF1	NM_001080542	exon24	c.C2733T	p.D911D	CTGGGTGTCCACC	.	54.0	23.0	62.0	0.0	.	48	.	.	Atlas-SNP
ANKLE1	126549	hgsc.bcm.edu	hg19	19	17393777	17393777	+	Silent	SNP	G	G	A	rs368355885		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ANKLE1	NM_152363	exon4	c.G426A	p.G142G	GATCGGGGCAGAG	.	91.0	12.0	55.0	0.0	.	27	.	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	hg19	19	47425012	47425012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	.	NM_004491	exon1	c.G3080A	p.S1027N	TTATGAGCAATTT	.	58.0	26.0	67.0	0.0	.	.	.	.	Atlas-SNP
ZNF17	7565	hgsc.bcm.edu	hg19	19	57931108	57931108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ZNF17	NM_006959	exon3	c.C248T	p.A83V	AGAAGGCCCAGCC	.	136.0	24.0	125.0	0.0	.	49	.	.	Atlas-SNP
ZSCAN22	342945	hgsc.bcm.edu	hg19	19	58846306	58846306	+	Silent	SNP	G	G	A	rs138271492	bycluster;alternate_allele	TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	ZSCAN22	NM_181846	exon2	c.G138A	p.E46E	CTCTGAGGCTGCA	.	54.0	23.0	64.0	0.0	.	47	.	G|1.000;C|0.000	Atlas-SNP
DLGAP4	22839	hgsc.bcm.edu	hg19	20	35068157	35068157	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	DLGAP4	NM_014902	exon4	c.G1242A	p.R414R	CACCAGGAGTCTG	.	63.0	11.0	42.0	0.0	.	111	.	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	hg19	20	57429421	57429421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	GNAS	NM_001077490	exon1	c.C914T	p.P305L	TGATGCCGCGGAG	.	156.0	50.0	80.0	0.0	.	867	.	.	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	hg19	21	10933874	10933874	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	TPTE_ENST00000361285,NS,carcinoma,-1,4	TPTE	NM_199261	exon17	c.G1005A	p.A335A	GTGAATCGCTACG	.	792.0	120.0	887.0	0.0	.	513	.	.	Atlas-SNP
TMPRSS3	64699	hgsc.bcm.edu	hg19	21	43802304	43802304	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	TMPRSS3	NM_001256317	exon9	c.A822C	p.L274L	GGAAACTAGACCC	.	91.0	39.0	67.0	0.0	.	40	.	.	Atlas-SNP
TSPEAR	54084	hgsc.bcm.edu	hg19	21	45949775	45949775	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	TSPEAR	NM_144991	exon5	c.C696T	p.S232S	GTTCCTGCTGGGA	.	45.0	14.0	48.0	0.0	.	110	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	hg19	22	39994193	39994193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	CACNA1I	NM_001003406	exon2	c.A274G	p.N92D	CTGCTGAACTGCG	.	25.0	17.0	38.0	0.0	.	264	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382495	24382495	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	.	NM_001136234	exon1	c.G1618C	p.A540P	CTAGCTGCTGCTG	.	108.0	8.0	106.0	0.0	.	.	.	.	Atlas-SNP
TRPC5	7224	hgsc.bcm.edu	hg19	X	111195372	111195372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	TRPC5	NM_012471	exon2	c.A277T	p.S93C	ACACGCTGTGGTT	.	191.0	87.0	213.0	0.0	.	142	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15339	15339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	.	ENST00000361789	exon1	c.T593C	p.L198P	ACCTCCTATTCTT	.	24.0	15.0	17.0	0.0	.	.	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578502	7578503	+	Frame_Shift_Ins	INS	-	-	CAGGG	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	TP53_ENST00000545858,NS,carcinoma,-1,1	TP53	NM_001126112	exon5	c.428_429insCCCTG	p.V143fs	.	.	51.0	34.0	82.0	0.0	.	33396	.	.	Atlas-INDEL
PSEN2	5664	hgsc.bcm.edu	hg19	1	227076565	227076566	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	PSEN2	NM_012486	exon8	c.602_603insC	p.Y201fs	.	.	122.0	26.0	83.0	0.0	.	55	.	.	Atlas-INDEL
HMCN1	83872	hgsc.bcm.edu	hg19	1	186024781	186024781	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAE6-01A-11D-A40R-10	TCGA-DD-AAE6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	95b28a9a-7a85-4018-8418-c4381b9fc1a5	971f1297-9d76-49e3-9651-20e92dd3b3bc	.	HMCN1	NM_031935	exon45	c.7118delA	p.D2373fs	.	.	221.0	89.0	149.0	0.0	.	797	.	.	Atlas-INDEL