Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MTOR 2475 hgsc.bcm.edu hg19 1 11184573 11184573 + Missense_Mutation SNP G G T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee MTOR,NS,malignant_melanoma,0,5 MTOR NM_004958 exon47 c.C6644A p.S2215Y CGAAGAGATGTTG . 111.0 16.0 124.0 0.0 . 327 . . Atlas-SNP RIMKLA 284716 hgsc.bcm.edu hg19 1 42865094 42865094 + Silent SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . RIMKLA NM_173642 exon2 c.G183A p.K61K CCAGAAGGCCCTC . 48.0 8.0 50.0 0.0 . 32 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103471625 103471625 + Missense_Mutation SNP T T C novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . COL11A1 NM_080629 exon17 c.A1826G p.K609R CTGACCTTTGCCC . 253.0 45.0 197.0 0.0 . 972 . . Atlas-SNP VANGL1 81839 hgsc.bcm.edu hg19 1 116194093 116194093 + Missense_Mutation SNP C C A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . VANGL1 NM_001172411 exon2 c.C59A p.S20Y AAAAATCTCACAG . 45.0 13.0 49.0 0.0 . 65 . . Atlas-SNP SEMA6C 10500 hgsc.bcm.edu hg19 1 151105786 151105786 + Missense_Mutation SNP C C T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . SEMA6C NM_001178061 exon20 c.G2063A p.R688Q TGGAGCCGGGCCA . 176.0 30.0 101.0 0.0 . 70 . . Atlas-SNP ZNF687 57592 hgsc.bcm.edu hg19 1 151262451 151262451 + Missense_Mutation SNP T T A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . ZNF687 NM_020832 exon6 c.T2932A p.Y978N GATGAATACGTGG . 66.0 11.0 49.0 0.0 . 94 . . Atlas-SNP CRTC2 200186 hgsc.bcm.edu hg19 1 153924613 153924613 + Missense_Mutation SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . CRTC2 NM_181715 exon10 c.C878T p.P293L TCTTCAGGGTCCA . 113.0 38.0 90.0 0.0 . 58 . . Atlas-SNP DUSP27 92235 hgsc.bcm.edu hg19 1 167097157 167097157 + Missense_Mutation SNP A A G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . DUSP27 NM_001080426 exon5 c.A2789G p.E930G GCAAAGAGATGGA . 111.0 9.0 73.0 0.0 . 235 . . Atlas-SNP CNTN2 6900 hgsc.bcm.edu hg19 1 205027173 205027173 + Silent SNP C C T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . CNTN2 NM_005076 exon3 c.C195T p.A65A CCGGGCCAGCCCT . 173.0 83.0 120.0 0.0 . 116 . . Atlas-SNP DYRK3 8444 hgsc.bcm.edu hg19 1 206821451 206821451 + Missense_Mutation SNP A A T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . DYRK3 NM_003582 exon3 c.A908T p.K303M AAAATAAGTTTCA . 210.0 33.0 144.0 0.0 . 146 . . Atlas-SNP RHOB 388 hgsc.bcm.edu hg19 2 20647230 20647230 + Missense_Mutation SNP G G T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . RHOB NM_004040 exon1 c.G4T p.A2S CTCATGGCGGCCA . 68.0 12.0 52.0 0.0 . 18 . . Atlas-SNP CAPN13 92291 hgsc.bcm.edu hg19 2 30993223 30993223 + Silent SNP T T C novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . CAPN13 NM_144575 exon5 c.A480G p.Q160Q TTGGTTTTGGTGG . 122.0 23.0 125.0 0.0 . 70 . . Atlas-SNP FOXN2 3344 hgsc.bcm.edu hg19 2 48602537 48602537 + Silent SNP A A C novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . FOXN2 NM_002158 exon7 c.A1251C p.L417L TTCCCTAATAAGT . 43.0 5.0 43.0 0.0 . 39 . . Atlas-SNP KIAA1841 84542 hgsc.bcm.edu hg19 2 61333780 61333780 + Missense_Mutation SNP A A G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . KIAA1841 NM_032506 exon14 c.A1594G p.T532A CCCAAAACTGGGG . 98.0 12.0 112.0 0.0 . 95 . . Atlas-SNP PROM2 150696 hgsc.bcm.edu hg19 2 95943741 95943741 + Missense_Mutation SNP A A G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . PROM2 NM_001165977 exon8 c.A1039G p.M347V TCCAGCATGGTCC . 49.0 13.0 57.0 0.0 . 78 . . Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47155365 47155365 + Splice_Site SNP C C T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . SETD2 NM_014159 exon6 c.4715+1G>A . AACTTACGAAGGA . 84.0 23.0 96.0 0.0 . 721 . . Atlas-SNP PIK3CB 5291 hgsc.bcm.edu hg19 3 138478043 138478043 + Missense_Mutation SNP C C A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . PIK3CB NM_006219 exon1 c.G143T p.R48L GCTTCCCGAGGTA . 382.0 81.0 336.0 0.0 . 103 . . Atlas-SNP MECOM 2122 hgsc.bcm.edu hg19 3 168806945 168806945 + Missense_Mutation SNP C C G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee MECOM,mouth,carcinoma,0,1 MECOM NM_004991 exon16 c.G3428C p.G1143A GAAAGTCCACTTT . 66.0 3.0 74.0 0.0 . 216 . . Atlas-SNP KIAA0226 9711 hgsc.bcm.edu hg19 3 197431443 197431443 + Missense_Mutation SNP C C T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . KIAA0226 NM_014687 exon4 c.G433A p.D145N GTCTATCCCCGAG . 144.0 22.0 139.0 0.0 . 136 . . Atlas-SNP HNRNPD 3184 hgsc.bcm.edu hg19 4 83294718 83294718 + Silent SNP C C T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . HNRNPD NM_031370 exon1 c.G114A p.A38A CGCCGCCGCTGCC . 48.0 4.0 46.0 0.0 . 23 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90106600 90106600 + Missense_Mutation SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . GPR98 NM_032119 exon74 c.G15523A p.V5175M ACCAACGTGGTTG . 45.0 6.0 71.0 0.0 . 605 . . Atlas-SNP HIST1H1C 3006 hgsc.bcm.edu hg19 6 26056141 26056141 + Missense_Mutation SNP C C G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . HIST1H1C NM_005319 exon1 c.G516C p.K172N TGGGCTCTTAGCC . 98.0 19.0 88.0 0.0 . 80 . . Atlas-SNP AGR3 155465 hgsc.bcm.edu hg19 7 16900171 16900171 + Missense_Mutation SNP C C G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . AGR3 NM_176813 exon7 c.G404C p.R135T GAGTATCTTCCAG . 112.0 22.0 134.0 0.0 . 19 . . Atlas-SNP GLI3 2737 hgsc.bcm.edu hg19 7 42085105 42085105 + Missense_Mutation SNP G G C novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee GLI3,NS,carcinoma,0,1 GLI3 NM_000168 exon6 c.C704G p.A235G TATTCTGCTGGGC . 47.0 6.0 49.0 0.0 . 312 . . Atlas-SNP C7orf25 79020 hgsc.bcm.edu hg19 7 42949496 42949496 + Missense_Mutation SNP T T G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . C7orf25 NM_001099858 exon2 c.A1178C p.N393T ACCACATTAATTC . 202.0 32.0 152.0 0.0 . 36 . . Atlas-SNP UBE3C 9690 hgsc.bcm.edu hg19 7 157046730 157046730 + Missense_Mutation SNP A A G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . UBE3C NM_014671 exon20 c.A2777G p.Y926C CAGACTACAGGCT . 105.0 18.0 98.0 0.0 . 124 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69020463 69020463 + Silent SNP T T A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . PREX2 NM_024870 exon24 c.T2835A p.V945V GGAAGTTTCTTAT . 153.0 14.0 104.0 0.0 . 614 . . Atlas-SNP NLRP6 171389 hgsc.bcm.edu hg19 11 281308 281308 + Missense_Mutation SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . NLRP6 NM_138329 exon4 c.G1574A p.G525D CTGGCGGCGTTGG . 69.0 16.0 64.0 0.0 . 4 . . Atlas-SNP MICALCL 84953 hgsc.bcm.edu hg19 11 12315446 12315446 + Silent SNP A A G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . MICALCL NM_032867 exon3 c.A468G p.K156K GGAAAAAGGGAGT . 111.0 5.0 95.0 0.0 . 59 . . Atlas-SNP BBOX1 8424 hgsc.bcm.edu hg19 11 27114762 27114762 + Missense_Mutation SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee BBOX1,right_upper_lobe,carcinoma,0,1 BBOX1 NM_003986 exon5 c.G382A p.E128K GATTTTGAAGATG . 113.0 26.0 105.0 0.0 . 46 . . Atlas-SNP UCP2 7351 hgsc.bcm.edu hg19 11 73687988 73687988 + Missense_Mutation SNP C C A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . UCP2 NM_003355 exon5 c.G412T p.D138Y CCACATCCGTGGG . 107.0 20.0 75.0 0.0 . 24 . . Atlas-SNP GALNT6 11226 hgsc.bcm.edu hg19 12 51773494 51773494 + Silent SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . GALNT6 NM_007210 exon3 c.C72T p.L24L GAGGAAGAGGAAG . 36.0 9.0 37.0 0.0 . 63 . . Atlas-SNP OR9K2 441639 hgsc.bcm.edu hg19 12 55524551 55524551 + Silent SNP T T C novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . OR9K2 NM_001005243 exon1 c.T999C p.I333I AAATATTATTCTT . 53.0 9.0 40.0 0.0 . 63 . . Atlas-SNP ESYT1 23344 hgsc.bcm.edu hg19 12 56532051 56532051 + Missense_Mutation SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . ESYT1 NM_001184796 exon21 c.G2362A p.E788K GAGTTAGAGGAGG . 108.0 14.0 78.0 0.0 . 84 . . Atlas-SNP SHMT2 6472 hgsc.bcm.edu hg19 12 57627403 57627403 + Missense_Mutation SNP A A G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . SHMT2 NM_005412 exon9 c.A1081G p.M361V CGGGCCATGGCAG . 85.0 11.0 55.0 0.0 . 40 . . Atlas-SNP MVK 4598 hgsc.bcm.edu hg19 12 110029107 110029107 + Missense_Mutation SNP G G A rs104895352 TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . MVK NM_000431 exon9 c.G830A p.R277H GTGAGCGCGTGCT . 88.0 9.0 73.0 0.0 . 42 . . Atlas-SNP KIAA0586 9786 hgsc.bcm.edu hg19 14 58938977 58938977 + Missense_Mutation SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . KIAA0586 NM_001244189 exon20 c.G2773A p.E925K TTTGATGAAATAA . 392.0 62.0 404.0 0.0 . 180 . . Atlas-SNP TTBK2 146057 hgsc.bcm.edu hg19 15 43038338 43038338 + Missense_Mutation SNP A A T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . TTBK2 NM_173500 exon15 c.T3390A p.S1130R TCCTGGACTCTTG . 55.0 13.0 64.0 0.0 . 82 . . Atlas-SNP CRLF3 51379 hgsc.bcm.edu hg19 17 29120592 29120592 + Missense_Mutation SNP G G C novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . CRLF3 NM_015986 exon5 c.C702G p.F234L TACTATGAATTCA . 130.0 9.0 90.0 0.0 . 36 . . Atlas-SNP ERN1 2081 hgsc.bcm.edu hg19 17 62125306 62125306 + Missense_Mutation SNP G G T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . ERN1 NM_001433 exon19 c.C2441A p.A814E TCCATCGCAATCA . 60.0 4.0 58.0 0.0 . 102 . . Atlas-SNP RNF213 57674 hgsc.bcm.edu hg19 17 78269372 78269372 + Missense_Mutation SNP T T C novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . RNF213 NM_001256071 exon10 c.T1771C p.W591R TACCTGTGGCAAC . 116.0 12.0 95.0 0.0 . 766 . . Atlas-SNP EPB41L3 23136 hgsc.bcm.edu hg19 18 5423479 5423479 + Nonsense_Mutation SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . EPB41L3 NM_012307 exon11 c.C1237T p.Q413X GCGCTTGTGTCCT . 166.0 31.0 143.0 0.0 . 222 . . Atlas-SNP RPRD1A 55197 hgsc.bcm.edu hg19 18 33607210 33607210 + Missense_Mutation SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . RPRD1A NM_018170 exon5 c.C550T p.H184Y TCTGATGAACTGC . 204.0 46.0 208.0 0.0 . 30 . . Atlas-SNP SUPT5H 6829 hgsc.bcm.edu hg19 19 39966766 39966766 + Missense_Mutation SNP A A G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . SUPT5H NM_003169 exon28 c.A3070G p.S1024G GTTGTCAGCATTT . 79.0 24.0 42.0 0.0 . 119 . . Atlas-SNP NRSN2 80023 hgsc.bcm.edu hg19 20 333968 333968 + Missense_Mutation SNP G G A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . NRSN2 NM_024958 exon4 c.G304A p.D102N GTGTTGGATCAGC . 79.0 17.0 48.0 0.0 . 20 . . Atlas-SNP RNF114 55905 hgsc.bcm.edu hg19 20 48553085 48553085 + Missense_Mutation SNP C C T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . RNF114 NM_018683 exon1 c.C136T p.H46Y TGCGGACACGTGT . 123.0 7.0 110.0 0.0 . 9 . . Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58467458 58467458 + Missense_Mutation SNP T T C novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . SYCP2 NM_014258 exon23 c.A1951G p.T651A GTTTAGTAAGTTT . 31.0 7.0 43.0 0.0 . 204 . . Atlas-SNP PPARA 5465 hgsc.bcm.edu hg19 22 46614190 46614190 + Missense_Mutation SNP C C G novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . PPARA NM_001001928 exon5 c.C400G p.L134V CTCAAGCTGGTGT . 83.0 14.0 71.0 0.0 . 36 . . Atlas-SNP YY2 404281 hgsc.bcm.edu hg19 X 21875452 21875452 + Missense_Mutation SNP G G T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . YY2 NM_206923 exon1 c.G850T p.V284L GTCCACGTATGTG . 180.0 39.0 152.0 0.0 . 43 . . Atlas-SNP FAM47A 158724 hgsc.bcm.edu hg19 X 34148744 34148744 + Missense_Mutation SNP C C T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . FAM47A NM_203408 exon1 c.G1652A p.R551H ACCCGACGACTCT . 109.0 5.0 73.0 0.0 . 249 . . Atlas-SNP GRIPAP1 56850 hgsc.bcm.edu hg19 X 48840243 48840243 + Missense_Mutation SNP G G T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . GRIPAP1 NM_020137 exon15 c.C1216A p.Q406K TTTCTTGAAGTTG . 90.0 18.0 99.0 0.0 . 128 . . Atlas-SNP TRO 7216 hgsc.bcm.edu hg19 X 54949797 54949797 + Missense_Mutation SNP C C A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . TRO NM_016157 exon3 c.C832A p.L278I GAGGCTCTAAATG . 289.0 60.0 262.0 0.0 . 246 . . Atlas-SNP IGSF1 3547 hgsc.bcm.edu hg19 X 130417074 130417074 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . IGSF1 NM_001555 exon6 c.G832T p.E278X TTGCCTCATTTTT . 470.0 26.0 450.0 0.0 . 231 . . Atlas-SNP TXLNG 55787 hgsc.bcm.edu hg19 X 16836781 16836782 + Frame_Shift_Ins INS - - T novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . TXLNG NM_018360 exon2 c.187_188insT p.I63fs . . 483.0 93.0 439.0 0.0 . 40 . . Atlas-INDEL FMO3 2328 hgsc.bcm.edu hg19 1 171086300 171086302 + In_Frame_Del DEL CTT CTT - novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 CTT CTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . FMO3 NM_001002294 exon9 c.1316_1318del p.439_440del . . 142.0 16.0 135.0 0.0 . 73 . . Atlas-INDEL MGAT4B 11282 hgsc.bcm.edu hg19 5 179228997 179228997 + Frame_Shift_Del DEL G G - novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . MGAT4B NM_054013 exon1 c.116delT p.L39fs . . 152.0 48.0 123.0 0.0 . 41 . . Atlas-INDEL LCE1F 353137 hgsc.bcm.edu hg19 1 152749026 152749027 + In_Frame_Ins INS - - CAGCTCTGGGGGCTGCTG novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . LCE1F NM_178354 exon1 c.179_180insCAGCTCTGGGGGCTGCTG p.C60delinsCSSGGCC . . 281.0 31.0 178.0 0.0 . 42 . . Atlas-INDEL PPP1R12B 4660 hgsc.bcm.edu hg19 1 202318209 202318209 + Frame_Shift_Del DEL T T - novel TCGA-DD-AADK-01A-11D-A40R-10 TCGA-DD-AADK-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81255bf2-6aa2-4e6b-a03b-09b29c43c763 e0c3f2fd-7b5a-4c19-828c-8f89bcfc39ee . PPP1R12B NM_001167857 exon1 c.229delC p.L77fs . . 149.0 24.0 95.0 0.0 . 100 . . Atlas-INDEL