Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIAA1751 85452 hgsc.bcm.edu hg19 1 1895247 1895247 + Silent SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KIAA1751 NM_001080484 exon14 c.G1635T p.T545T GTTGATCGTGTAG . 35.0 13.0 49.0 0.0 . 92 . . Atlas-SNP CHD5 26038 hgsc.bcm.edu hg19 1 6228214 6228214 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CHD5 NM_015557 exon2 c.A203T p.K68I ACCTCTTTCTTCT . 42.0 14.0 48.0 0.0 . 267 . . Atlas-SNP CAMTA1 23261 hgsc.bcm.edu hg19 1 7721921 7721921 + Missense_Mutation SNP G G C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CAMTA1 NM_015215 exon8 c.G800C p.S267T CCGGCAGCCTGGG . 82.0 61.0 118.0 0.0 . 226 . . Atlas-SNP EPHA2 1969 hgsc.bcm.edu hg19 1 16461026 16461026 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . EPHA2 NM_004431 exon8 c.G1619A p.G540D GCCACGCCGCCAA . 161.0 57.0 175.0 0.0 . 102 . . Atlas-SNP ARHGEF19 128272 hgsc.bcm.edu hg19 1 16533490 16533490 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ARHGEF19 NM_153213 exon6 c.A1090T p.S364C CGCCGCTGCCGCG . 50.0 23.0 69.0 0.0 . 49 . . Atlas-SNP GPR3 2827 hgsc.bcm.edu hg19 1 27720946 27720946 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . GPR3 NM_005281 exon2 c.A644T p.Q215L ACGCCCAAATCTG . 35.0 10.0 34.0 0.0 . 23 . . Atlas-SNP SZT2 23334 hgsc.bcm.edu hg19 1 43903332 43903332 + Silent SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SZT2 NM_015284 exon44 c.G6186A p.L2062L CGCTCTGTCCCGA . 39.0 13.0 40.0 0.0 . 383 . . Atlas-SNP AGBL4 84871 hgsc.bcm.edu hg19 1 50163062 50163062 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . AGBL4 NM_032785 exon3 c.T205A p.F69I TAATGAACAGATC . 340.0 103.0 345.0 0.0 . 54 . . Atlas-SNP TTC22 55001 hgsc.bcm.edu hg19 1 55252674 55252674 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TTC22 NM_001114108 exon4 c.G814T p.D272Y CGCAGTCATGGAC . 29.0 10.0 22.0 0.0 . 40 . . Atlas-SNP HFM1 164045 hgsc.bcm.edu hg19 1 91843601 91843601 + Missense_Mutation SNP G G C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . HFM1 NM_001017975 exon11 c.C1376G p.T459R GGAATTGTTGCAG . 243.0 60.0 233.0 0.0 . 188 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103444281 103444281 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . COL11A1 NM_080629 exon35 c.G2773T p.G925C GAGGGCCAGGAGG . 194.0 109.0 191.0 0.0 . 972 . . Atlas-SNP POGZ 23126 hgsc.bcm.edu hg19 1 151378800 151378800 + Missense_Mutation SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . POGZ NM_015100 exon19 c.T2711C p.L904S GGGGCTAAGGGAG . 229.0 35.0 98.0 0.0 . 211 . . Atlas-SNP LOR 4014 hgsc.bcm.edu hg19 1 153234128 153234128 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LOR NM_000427 exon2 c.A703T p.S235C GGCGGCAGCGGCG . 19.0 8.0 11.0 0.0 . 19 . . Atlas-SNP THBS3 7059 hgsc.bcm.edu hg19 1 155176111 155176111 + Missense_Mutation SNP T T A rs143240289 alternate_allele TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . THBS3 NM_007112 exon2 c.A166T p.I56F GGTAGATGTCCCC . 185.0 53.0 97.0 0.0 . 70 . T|1.000;C|0.000 Atlas-SNP PIGM 93183 hgsc.bcm.edu hg19 1 160000962 160000962 + Missense_Mutation SNP T T C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PIGM NM_145167 exon1 c.A568G p.I190V GGGTTATGGGAAG . 341.0 88.0 172.0 0.0 . 27 . . Atlas-SNP COPA 1314 hgsc.bcm.edu hg19 1 160303437 160303437 + Silent SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . COPA NM_001098398 exon5 c.T342C p.D114D GGTCTGATCATCG . 194.0 25.0 80.0 0.0 . 181 . . Atlas-SNP ABL2 27 hgsc.bcm.edu hg19 1 179100575 179100575 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 ABL2_ENST00000512653,NS,carcinoma,0,3 ABL2 NM_007314 exon3 c.G262T p.A88S TTAGTGCCTGGGG . 206.0 126.0 97.0 1.0 . 307 . . Atlas-SNP SWT1 54823 hgsc.bcm.edu hg19 1 185173859 185173859 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SWT1 NM_017673 exon12 c.A1697T p.K566M GCTATAAGGAGGA . 528.0 145.0 278.0 0.0 . 88 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186014950 186014950 + Silent SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . HMCN1 NM_031935 exon41 c.G6435A p.L2145L CTTGCTGAAGAAA . 157.0 20.0 101.0 0.0 . 797 . . Atlas-SNP ADORA1 134 hgsc.bcm.edu hg19 1 203134431 203134431 + Silent SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ADORA1 NM_001048230 exon3 c.A384T p.I128I GGCCATAGCCGGC . 98.0 44.0 58.0 0.0 . 62 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237905615 237905615 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . RYR2 NM_001035 exon80 c.A11111T p.D3704V AGGAAGATGACGA . 78.0 26.0 49.0 0.0 . 1273 . . Atlas-SNP SCCPDH 51097 hgsc.bcm.edu hg19 1 246923257 246923257 + Splice_Site SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SCCPDH NM_016002 exon8 c.814-2A>T . TCATCTAGGTTCA . 92.0 59.0 101.0 0.0 . 37 . . Atlas-SNP KCNK3 3777 hgsc.bcm.edu hg19 2 26950553 26950553 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KCNK3 NM_002246 exon2 c.C302A p.P101H CGGCACCCAGCAC . 148.0 31.0 97.0 0.0 . 43 . . Atlas-SNP CLIP4 79745 hgsc.bcm.edu hg19 2 29355071 29355071 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CLIP4 NM_024692 exon4 c.T327A p.T109T TATGACTCTTTTA . 147.0 101.0 81.0 0.0 . 69 . . Atlas-SNP EML4 27436 hgsc.bcm.edu hg19 2 42556058 42556058 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . EML4 NM_019063 exon22 c.A2374T p.I792F ACAGATATCAATG . 81.0 14.0 92.0 0.0 . 92 . . Atlas-SNP FSHR 2492 hgsc.bcm.edu hg19 2 49190816 49190816 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FSHR NM_000145 exon10 c.A1144T p.I382L GCACTATGATGTT . 155.0 11.0 109.0 0.0 . 164 . . Atlas-SNP KIAA1841 84542 hgsc.bcm.edu hg19 2 61333732 61333732 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KIAA1841 NM_032506 exon14 c.A1546T p.I516L AAGGGTATAGAAT . 153.0 40.0 134.0 0.0 . 95 . . Atlas-SNP NMS 129521 hgsc.bcm.edu hg19 2 101096962 101096962 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . NMS NM_001011717 exon7 c.C341A p.S114X AGGGCTCGGGGAC . 80.0 21.0 71.0 0.0 . 26 . . Atlas-SNP SLC9A4 389015 hgsc.bcm.edu hg19 2 103142769 103142769 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SLC9A4 NM_001011552 exon11 c.T2002A p.S668T CCTCAGTCTGCAG . 67.0 37.0 64.0 0.0 . 115 . . Atlas-SNP TFCP2L1 29842 hgsc.bcm.edu hg19 2 122005784 122005784 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TFCP2L1 NM_014553 exon5 c.G460A p.E154K AAAACTCGACTGC . 42.0 12.0 58.0 0.0 . 54 . . Atlas-SNP TANC1 85461 hgsc.bcm.edu hg19 2 160086859 160086859 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TANC1 NM_033394 exon27 c.C4922T p.A1641V ACGCAGCCCCTCC . 109.0 65.0 74.0 0.0 . 157 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168100737 168100737 + Silent SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . XIRP2 NM_152381 exon9 c.G2835A p.V945V AGATGTGAAGAAT . 277.0 166.0 258.0 0.0 . 914 . . Atlas-SNP ZAK 0 hgsc.bcm.edu hg19 2 173955762 173955762 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ZAK NM_133646 exon2 c.G3T p.M1I TGAGATGTCGTCT . 88.0 30.0 85.0 0.0 . 62 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179560620 179560620 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TTN NM_001267550 exon114 c.A31179T p.V10393V TTGAATTACTTCC . 144.0 52.0 106.0 0.0 . 18412 . . Atlas-SNP ZNF804A 91752 hgsc.bcm.edu hg19 2 185803176 185803176 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ZNF804A NM_194250 exon4 c.T3053A p.V1018E CTTTTGTAACAGC . 126.0 28.0 116.0 0.0 . 322 . . Atlas-SNP MDH1B 130752 hgsc.bcm.edu hg19 2 207620148 207620148 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MDH1B NM_001039845 exon5 c.A495T p.I165I TAGAGTTATGCTA . 69.0 19.0 71.0 0.0 . 89 . . Atlas-SNP IQCA1 79781 hgsc.bcm.edu hg19 2 237285770 237285770 + Nonsense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . IQCA1 NM_001270585 exon13 c.A1561T p.K521X TGACTTTCAGAGC . 45.0 13.0 46.0 0.0 . 170 . . Atlas-SNP IQSEC1 9922 hgsc.bcm.edu hg19 3 12957128 12957128 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . IQSEC1 NM_014869 exon7 c.A2168T p.Q723L ACCTTCTGCACCT . 64.0 19.0 57.0 0.0 . 88 . . Atlas-SNP ARPP21 10777 hgsc.bcm.edu hg19 3 35771014 35771014 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ARPP21 NM_016300 exon15 c.T1445A p.L482H TCCTTCTTAATCC . 90.0 52.0 84.0 0.0 . 153 . . Atlas-SNP TGM4 7047 hgsc.bcm.edu hg19 3 44935105 44935105 + Missense_Mutation SNP A A T rs74776426 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TGM4 NM_003241 exon5 c.A467T p.K156I AGCGCAAAGAGTA . 115.0 69.0 93.0 0.0 . 82 . A|0.978;G|0.022 Atlas-SNP CDHR4 389118 hgsc.bcm.edu hg19 3 49831234 49831234 + Splice_Site SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CDHR4 NM_001007540 exon12 c.1483+2T>A . GGATGTACCGCTG . 164.0 99.0 158.0 0.0 . 37 . . Atlas-SNP CDHR4 389118 hgsc.bcm.edu hg19 3 49836807 49836807 + Missense_Mutation SNP T T G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CDHR4 NM_001007540 exon2 c.A113C p.Q38P AAAAACTGAAGGA . 95.0 42.0 94.0 0.0 . 37 . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52439294 52439294 + Silent SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . BAP1 NM_004656 exon11 c.G948A p.A316A ACCAGCCGCCTCC . 46.0 19.0 44.0 0.0 . 371 . . Atlas-SNP FLNB 2317 hgsc.bcm.edu hg19 3 58095360 58095360 + Missense_Mutation SNP G G C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FLNB NM_001457 exon15 c.G2257C p.E753Q GGTGTGGAGAGAA . 124.0 29.0 115.0 0.0 . 430 . . Atlas-SNP TMF1 7110 hgsc.bcm.edu hg19 3 69084229 69084229 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TMF1 NM_007114 exon9 c.A2189T p.Q730L GCCGCTTGTTCTG . 90.0 54.0 78.0 0.0 . 77 . . Atlas-SNP CRYBG3 131544 hgsc.bcm.edu hg19 3 97605567 97605567 + Silent SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CRYBG3 NM_153605 exon8 c.A7245G p.E2415E GGAAGAACTGAAT . 298.0 159.0 297.0 0.0 . 86 . . Atlas-SNP FLJ25363 0 hgsc.bcm.edu hg19 3 109136694 109136694 + Silent SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . . NM_001145553 exon2 c.C156A p.P52P CCCACCCATTCAA . 77.0 13.0 62.0 0.0 . . . . Atlas-SNP CD86 942 hgsc.bcm.edu hg19 3 121810486 121810486 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CD86 NM_001206924 exon2 c.T53A p.F18Y TGGCCTTCCTGCT . 48.0 34.0 39.0 0.0 . 43 . . Atlas-SNP CHST13 166012 hgsc.bcm.edu hg19 3 126260677 126260677 + Missense_Mutation SNP G G C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CHST13 NM_152889 exon3 c.G282C p.E94D GCCGGAGGACCTG . 76.0 24.0 58.0 0.0 . 21 . . Atlas-SNP C3orf58 205428 hgsc.bcm.edu hg19 3 143708415 143708415 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . C3orf58 NM_173552 exon3 c.G1025T p.C342F AGGCTTGCTTATC . 95.0 28.0 77.0 0.0 . 36 . . Atlas-SNP C3orf58 205428 hgsc.bcm.edu hg19 3 143708416 143708416 + Missense_Mutation SNP C C G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . C3orf58 NM_173552 exon3 c.C1026G p.C342W GGCTTGCTTATCA . 97.0 29.0 77.0 0.0 . 36 . . Atlas-SNP KCNMB2 10242 hgsc.bcm.edu hg19 3 178543411 178543411 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KCNMB2 NM_005832 exon4 c.T92A p.L31Q ACCTCCTGGACAA . 77.0 41.0 78.0 0.0 . 35 . . Atlas-SNP EVC2 132884 hgsc.bcm.edu hg19 4 5564738 5564738 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . EVC2 NM_147127 exon22 c.T3764A p.V1255E ATGGGTACAGGGG . 101.0 38.0 64.0 0.0 . 202 . . Atlas-SNP PTTG2 10744 hgsc.bcm.edu hg19 4 37962314 37962314 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PTTG2 NM_006607 exon1 c.A259T p.S87C CAGCCAAGCTTTT . 140.0 86.0 120.0 0.0 . 15 . . Atlas-SNP TMPRSS11BNL 401136 hgsc.bcm.edu hg19 4 69078179 69078179 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TMPRSS11BNL NM_001129907 exon2 c.T25A p.C9S ATGTACAGGAAGC . 286.0 89.0 254.0 0.0 . 4 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79461941 79461941 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FRAS1 NM_025074 exon74 c.A11702T p.Q3901L TGTCACAGACTGG . 141.0 82.0 145.0 0.0 . 779 . . Atlas-SNP BMPR1B 658 hgsc.bcm.edu hg19 4 96052479 96052479 + Missense_Mutation SNP G G A rs373000965 TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . BMPR1B NM_001256793 exon8 c.G982A p.A328T CTAGACGCTAAAT . 144.0 44.0 164.0 0.0 . 121 . . Atlas-SNP DDIT4L 115265 hgsc.bcm.edu hg19 4 101109256 101109256 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . DDIT4L NM_145244 exon3 c.T160A p.C54S TCTGGCAAGTTGA . 61.0 16.0 36.0 0.0 . 33 . . Atlas-SNP NEUROG2 63973 hgsc.bcm.edu hg19 4 113436007 113436007 + Missense_Mutation SNP A A C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . NEUROG2 NM_024019 exon2 c.T625G p.S209A CGGGCGAGGGGCT . 48.0 20.0 24.0 0.0 . 25 . . Atlas-SNP NAA15 80155 hgsc.bcm.edu hg19 4 140264113 140264113 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . NAA15 NM_057175 exon5 c.A536T p.Q179L CACAACAGGTAAT . 225.0 99.0 291.0 0.0 . 88 . . Atlas-SNP TMEM144 55314 hgsc.bcm.edu hg19 4 159161486 159161486 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TMEM144 NM_018342 exon10 c.T718A p.F240I GGCATCTTTCTTA . 113.0 32.0 110.0 0.0 . 34 . . Atlas-SNP PALLD 23022 hgsc.bcm.edu hg19 4 169432856 169432856 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PALLD NM_001166108 exon2 c.T201A p.I67I GCAGATTTTCAGT . 234.0 63.0 223.0 0.0 . 179 . . Atlas-SNP LRRC14B 389257 hgsc.bcm.edu hg19 5 192291 192291 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LRRC14B NM_001080478 exon1 c.T638A p.L213Q GTGCCCTGCGCAA . 158.0 80.0 80.0 0.0 . 30 . . Atlas-SNP SLC12A7 10723 hgsc.bcm.edu hg19 5 1094313 1094313 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SLC12A7 NM_006598 exon2 c.G175A p.E59K CTTGTTCCACCTC . 145.0 48.0 75.0 0.0 . 97 . . Atlas-SNP MAST4 375449 hgsc.bcm.edu hg19 5 66462123 66462123 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MAST4 NM_001164664 exon29 c.G7116T p.K2372N AGGGAAGAAATGC . 133.0 19.0 81.0 0.0 . 218 . . Atlas-SNP MCTP1 79772 hgsc.bcm.edu hg19 5 94275891 94275891 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MCTP1 NM_024717 exon5 c.A1070T p.D357V GTCACATCTGTGG . 78.0 43.0 76.0 0.0 . 110 . . Atlas-SNP SPATA9 83890 hgsc.bcm.edu hg19 5 95018538 95018538 + Silent SNP C C T rs373326650 TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SPATA9 NM_031952 exon1 c.G21A p.G7G TATCCACCCAACA . 161.0 7.0 107.0 0.0 . 17 . . Atlas-SNP FBXL17 64839 hgsc.bcm.edu hg19 5 107356642 107356642 + Nonsense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FBXL17 NM_001163315 exon7 c.T1806A p.C602X GATTTTACAGGAC . 70.0 19.0 56.0 0.0 . 60 . . Atlas-SNP LOX 4015 hgsc.bcm.edu hg19 5 121405851 121405851 + Missense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LOX NM_002317 exon6 c.C1144T p.P382S AGCTGGGGTTTAC . 180.0 27.0 115.0 0.0 . 29 . . Atlas-SNP SLC25A48 153328 hgsc.bcm.edu hg19 5 135188444 135188444 + Missense_Mutation SNP G G C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SLC25A48 NM_145282 exon4 c.G355C p.G119R TCTGTCGGGCTGG . 207.0 22.0 135.0 0.0 . 37 . . Atlas-SNP TRPC7 57113 hgsc.bcm.edu hg19 5 135651437 135651437 + Missense_Mutation SNP T T G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TRPC7 NM_020389 exon3 c.A811C p.K271Q AATCCTTGCATTG . 130.0 66.0 67.0 0.0 . 126 . . Atlas-SNP PCDHA13 56136 hgsc.bcm.edu hg19 5 140262151 140262151 + Missense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PCDHA13 NM_031865 exon1 c.G298A p.A100T CGGAGCGCGGAGT . 186.0 31.0 112.0 0.0 . 213 . . Atlas-SNP PCDHGA5 56110 hgsc.bcm.edu hg19 5 140744468 140744468 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PCDHGA5 NM_032054 exon1 c.T571A p.Y191N CAAAAGTATCCGG . 186.0 77.0 96.0 0.0 . 215 . . Atlas-SNP PCDHGA12 26025 hgsc.bcm.edu hg19 5 140811636 140811636 + Missense_Mutation SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PCDHGA12 NM_032094 exon1 c.A1310G p.H437R AAACTCATATCTC . 153.0 18.0 96.0 0.0 . 271 . . Atlas-SNP PRELID2 153768 hgsc.bcm.edu hg19 5 145197614 145197614 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PRELID2 NM_182960 exon5 c.A247T p.S83C AAATGCTCACCTG . 111.0 20.0 65.0 0.0 . 16 . . Atlas-SNP GABRP 2568 hgsc.bcm.edu hg19 5 170232776 170232776 + Missense_Mutation SNP C C A rs79061387 bycluster;by1000genomes;alternate_allele TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . GABRP NM_014211 exon7 c.C598A p.R200S TCTGTGCGTGGAC . 135.0 49.0 106.0 0.0 . 65 . C|0.999;T|0.001 Atlas-SNP GPRIN1 114787 hgsc.bcm.edu hg19 5 176024938 176024938 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . GPRIN1 NM_052899 exon2 c.A1898T p.Q633L CCAGACTGCGGCT . 72.0 45.0 41.0 0.0 . 77 . . Atlas-SNP FOXQ1 94234 hgsc.bcm.edu hg19 6 1313560 1313560 + Silent SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FOXQ1 NM_033260 exon1 c.G621T p.G207G CGACGGGGTCTTC . 114.0 56.0 78.0 0.0 . 8 . . Atlas-SNP MBOAT1 154141 hgsc.bcm.edu hg19 6 20131376 20131376 + Silent SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MBOAT1 NM_001080480 exon5 c.T474C p.D158D CTTACCATCATGA . 70.0 18.0 73.0 0.0 . 48 . . Atlas-SNP ZSCAN12 9753 hgsc.bcm.edu hg19 6 28359478 28359478 + Nonsense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ZSCAN12 NM_001163391 exon4 c.C589T p.Q197X CTTCTTGCTTTAA . 37.0 27.0 22.0 0.0 . 35 . . Atlas-SNP ZSCAN12 9753 hgsc.bcm.edu hg19 6 28359479 28359479 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ZSCAN12 NM_001163391 exon4 c.G588T p.K196N TTCTTGCTTTAAA . 36.0 28.0 22.0 0.0 . 35 . . Atlas-SNP PSORS1C1 170679 hgsc.bcm.edu hg19 6 31106509 31106509 + Silent SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PSORS1C1 NM_014068 exon5 c.C120T p.H40H CCCCCACGTTAAT . 82.0 17.0 73.0 0.0 . 11 . . Atlas-SNP FOXP4 116113 hgsc.bcm.edu hg19 6 41566593 41566593 + Silent SNP G G C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FOXP4 NM_001012426 exon17 c.G1962C p.L654L TCCCCTGGGCGCC . 174.0 78.0 200.0 0.0 . 83 . . Atlas-SNP MEP1A 4224 hgsc.bcm.edu hg19 6 46803136 46803136 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MEP1A NM_005588 exon13 c.A1934T p.Q645L TGAGCCAGGGGCA . 95.0 26.0 67.0 0.0 . 93 . . Atlas-SNP PTCHD4 442213 hgsc.bcm.edu hg19 6 47869646 47869646 + Silent SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . . NM_207499 exon3 c.C933T p.S311S TTTCTAGCTTGAG . 62.0 36.0 46.0 0.0 . . . . Atlas-SNP IL17A 3605 hgsc.bcm.edu hg19 6 52053894 52053894 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . IL17A NM_002190 exon3 c.A272T p.E91V TCTGGGAGGCAAA . 110.0 37.0 69.0 0.0 . 28 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 66115107 66115107 + Missense_Mutation SNP A A G rs149421359 TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . EYS NM_001142801 exon6 c.T1016C p.V339A CATGGTACTAATG . 243.0 123.0 172.0 0.0 . 527 . A|1.000;G|0.000 Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75799957 75799957 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . COL12A1 NM_004370 exon63 c.G8810T p.S2937I TTGCGACTGGACT . 60.0 17.0 47.0 0.0 . 385 . . Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101054670 101054670 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ASCC3 NM_006828 exon32 c.G4990T p.G1664X CTGTTCCCTTAAT . 67.0 30.0 87.0 0.0 . 205 . . Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101054671 101054671 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ASCC3 NM_006828 exon32 c.G4989T p.K1663N TGTTCCCTTAATA . 67.0 30.0 86.0 0.0 . 205 . . Atlas-SNP IGF2BP3 10643 hgsc.bcm.edu hg19 7 23391100 23391100 + Silent SNP T T C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . IGF2BP3 NM_006547 exon6 c.A507G p.R169R GCGACCTCGGGGC . 53.0 9.0 39.0 0.0 . 71 . . Atlas-SNP PPP1R17 10842 hgsc.bcm.edu hg19 7 31732136 31732136 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . . NM_006658 exon2 c.A81T p.L27F CCACTTAGGTAAA . 63.0 40.0 73.0 0.0 . . . . Atlas-SNP DBNL 28988 hgsc.bcm.edu hg19 7 44089828 44089828 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . DBNL NM_001122956 exon2 c.C88T p.L30F AGGGCTCTCTTTA . 99.0 24.0 82.0 0.0 . 26 . . Atlas-SNP NACAD 23148 hgsc.bcm.edu hg19 7 45124713 45124713 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . NACAD NM_001146334 exon2 c.A1066T p.S356C ACGTGCTGTCCTC . 141.0 42.0 99.0 0.0 . 44 . . Atlas-SNP FBXL13 222235 hgsc.bcm.edu hg19 7 102603993 102603993 + Silent SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FBXL13 NM_001111038 exon8 c.T711A p.T237T TCTGAAAGTTTTG . 45.0 11.0 46.0 0.0 . 65 . . Atlas-SNP LAMB1 3912 hgsc.bcm.edu hg19 7 107635345 107635345 + Missense_Mutation SNP A A C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LAMB1 NM_002291 exon5 c.T410G p.I137R GTCATTATGAGAT . 43.0 23.0 49.0 0.0 . 185 . . Atlas-SNP LMOD2 442721 hgsc.bcm.edu hg19 7 123303032 123303032 + Silent SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LMOD2 NM_207163 exon2 c.A1392G p.K464K CATCAAACAACAG . 128.0 59.0 151.0 0.0 . 62 . . Atlas-SNP CALU 813 hgsc.bcm.edu hg19 7 128407568 128407568 + Silent SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CALU NM_001199671 exon7 c.A726T p.R242R AGAGCGAGAGCAG . 115.0 52.0 179.0 0.0 . 42 . . Atlas-SNP TNPO3 23534 hgsc.bcm.edu hg19 7 128612495 128612495 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 TNPO3_ENST00000393245,rectum,carcinoma,0,2 TNPO3 NM_012470 exon19 c.A2415T p.T805T TACCCCTGTATGA . 49.0 19.0 62.0 0.0 . 148 . . Atlas-SNP ADCK2 90956 hgsc.bcm.edu hg19 7 140373721 140373721 + Silent SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ADCK2 NM_052853 exon1 c.C591T p.I197I GAGCATCCTCTCT . 36.0 13.0 56.0 0.0 . 37 . . Atlas-SNP KEL 3792 hgsc.bcm.edu hg19 7 142639612 142639612 + Missense_Mutation SNP T T C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KEL NM_000420 exon18 c.A1946G p.Y649C TTGCTGTATGCCT . 45.0 27.0 54.0 0.0 . 128 . . Atlas-SNP NPM2 10361 hgsc.bcm.edu hg19 8 21891622 21891622 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . NPM2 NM_182795 exon6 c.G367T p.A123S ACAGAAGCATCAG . 62.0 27.0 38.0 0.0 . 12 . . Atlas-SNP KLHL38 340359 hgsc.bcm.edu hg19 8 124658143 124658143 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KLHL38 NM_001081675 exon3 c.G1582A p.G528R GCCGCCCGCCCGT . 108.0 59.0 103.0 0.0 . 81 . . Atlas-SNP ANXA13 312 hgsc.bcm.edu hg19 8 124693593 124693593 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ANXA13 NM_001003954 exon12 c.C961A p.L321I CCTGAAGGTCCAC . 49.0 7.0 56.0 0.0 . 38 . . Atlas-SNP FER1L6 654463 hgsc.bcm.edu hg19 8 125072802 125072802 + Missense_Mutation SNP G G T rs373037712 TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FER1L6 NM_001039112 exon24 c.G2999T p.G1000V TCTGGGGAGTTCG . 91.0 13.0 81.0 0.0 . 268 . . Atlas-SNP HSF1 3297 hgsc.bcm.edu hg19 8 145533158 145533158 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . HSF1 NM_005526 exon3 c.G244T p.V82F AAAGTGGTCCACA . 204.0 118.0 175.0 1.0 . 29 . . Atlas-SNP LRRC24 441381 hgsc.bcm.edu hg19 8 145748008 145748008 + Missense_Mutation SNP C C G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LRRC24 NM_001024678 exon5 c.G1393C p.E465Q CGCGCTCGTCGCG . 92.0 25.0 91.0 0.0 . 11 . . Atlas-SNP FOCAD 54914 hgsc.bcm.edu hg19 9 20944683 20944683 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . . NM_017794 exon31 c.A3465T p.Q1155H CAGCCAAATGCAG . 100.0 25.0 74.0 0.0 . . . . Atlas-SNP C9orf57 138240 hgsc.bcm.edu hg19 9 74671740 74671740 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . C9orf57 NM_001128618 exon3 c.A183T p.T61T AGGTTTTGTCTGG . 78.0 54.0 60.0 0.0 . 16 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79324389 79324389 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PRUNE2 NM_015225 exon8 c.T2801A p.L934Q GGAACTAGGACAT . 98.0 63.0 94.0 0.0 . 331 . . Atlas-SNP SPATA31D1 389763 hgsc.bcm.edu hg19 9 84606346 84606346 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . . NM_001001670 exon4 c.T961A p.L321M ACCATCTTGAAGA . 142.0 98.0 132.0 0.0 . . . . Atlas-SNP EPB41L4B 54566 hgsc.bcm.edu hg19 9 111979288 111979288 + Missense_Mutation SNP T T C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . EPB41L4B NM_019114 exon16 c.A1547G p.H516R GAGTGGTGCTGGT . 105.0 27.0 86.0 0.0 . 111 . . Atlas-SNP MUSK 4593 hgsc.bcm.edu hg19 9 113459680 113459680 + Missense_Mutation SNP T T G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MUSK NM_001166281 exon5 c.T562G p.Y188D GGACAGTATCGAT . 157.0 47.0 122.0 0.0 . 112 . . Atlas-SNP MUSK 4593 hgsc.bcm.edu hg19 9 113459681 113459681 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MUSK NM_001166281 exon5 c.A563T p.Y188F GACAGTATCGATG . 154.0 46.0 123.0 0.0 . 112 . . Atlas-SNP LAMC3 10319 hgsc.bcm.edu hg19 9 133936495 133936495 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LAMC3 NM_006059 exon13 c.T2232A p.P744P CAACCCTTTCGCG . 43.0 33.0 34.0 0.0 . 167 . . Atlas-SNP KCNT1 57582 hgsc.bcm.edu hg19 9 138662770 138662770 + Missense_Mutation SNP C C G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KCNT1 NM_020822 exon18 c.C1837G p.R613G GGGCCCCGGCACA . 165.0 61.0 142.0 0.0 . 139 . . Atlas-SNP CCDC3 83643 hgsc.bcm.edu hg19 10 13040480 13040480 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CCDC3 NM_031455 exon2 c.G407T p.G136V TTGACTCCGTGAG . 96.0 23.0 70.0 0.0 . 27 . . Atlas-SNP FAM188A 80013 hgsc.bcm.edu hg19 10 15863696 15863696 + Missense_Mutation SNP C C G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FAM188A NM_024948 exon9 c.G760C p.V254L ATCCTACTGCTGC . 126.0 71.0 79.0 0.0 . 44 . . Atlas-SNP HNRNPF 3185 hgsc.bcm.edu hg19 10 43883327 43883327 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . HNRNPF NM_001098204 exon4 c.G6T p.M2I GCCCAGCATCATG . 75.0 43.0 85.0 0.0 . 57 . . Atlas-SNP DLG5 9231 hgsc.bcm.edu hg19 10 79553847 79553847 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . DLG5 NM_004747 exon31 c.G5575A p.D1859N CCTTGTCCCTCAG . 70.0 47.0 45.0 0.0 . 154 . . Atlas-SNP C10orf99 387695 hgsc.bcm.edu hg19 10 85933619 85933619 + Silent SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . C10orf99 NM_207373 exon1 c.A12T p.L4L GCTTCTAGTCCTT . 76.0 18.0 56.0 0.0 . 8 . . Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134693042 134693042 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TTC40 NM_001200049 exon29 c.T3893A p.L1298Q GCCTCCAGCTGCC . 130.0 70.0 158.0 0.0 . 100 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135020434 135020434 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KNDC1 NM_152643 exon19 c.A3556T p.S1186C TTCCTCAGCTTGG . 161.0 82.0 159.0 0.0 . 155 . . Atlas-SNP OR51G2 81282 hgsc.bcm.edu hg19 11 4936771 4936771 + Silent SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . OR51G2 NM_001005238 exon1 c.G123T p.L41L GGAAACCAGATAC . 109.0 68.0 106.0 0.0 . 70 . . Atlas-SNP OR51A2 401667 hgsc.bcm.edu hg19 11 4976935 4976935 + Silent SNP A A T rs78255170 alternate_allele TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . OR51A2 NM_001004748 exon1 c.T9A p.I3I GTTGATAATGGAC . 304.0 77.0 245.0 0.0 . 40 . . Atlas-SNP OR10A5 144124 hgsc.bcm.edu hg19 11 6866988 6866988 + Missense_Mutation SNP G G C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . OR10A5 NM_178168 exon1 c.G75C p.Q25H AATACAGTCATTG . 133.0 8.0 105.0 0.0 . 48 . . Atlas-SNP ABCC8 6833 hgsc.bcm.edu hg19 11 17464328 17464328 + Silent SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ABCC8 NM_000352 exon10 c.G1569A p.E523E GGTCGTCTCCACC . 77.0 19.0 50.0 0.0 . 170 . . Atlas-SNP OR5R1 219479 hgsc.bcm.edu hg19 11 56184984 56184984 + Missense_Mutation SNP C C G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 OR5R1,colon,carcinoma,0,1 OR5R1 NM_001004744 exon1 c.G725C p.G242A TGGGAGCCACAGG . 144.0 32.0 121.0 0.0 . 83 . . Atlas-SNP TMEM132A 54972 hgsc.bcm.edu hg19 11 60703650 60703650 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TMEM132A NM_017870 exon11 c.T2346A p.A782A CCCTGCTTGGAGC . 61.0 32.0 77.0 0.0 . 135 . . Atlas-SNP LGALS12 85329 hgsc.bcm.edu hg19 11 63283717 63283717 + Splice_Site SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LGALS12 NM_001142536 exon8 c.838-2A>T . TTTCCCAGGTGCT . 26.0 7.0 27.0 0.0 . 35 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103339360 103339360 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . DYNC2H1 NM_001080463 exon89 c.A12713T p.Q4238L GAAATCAACTTTC . 104.0 67.0 86.0 0.0 . 246 . . Atlas-SNP SORL1 6653 hgsc.bcm.edu hg19 11 121475846 121475846 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SORL1 NM_003105 exon34 c.A4676T p.Q1559L AAGTACAGAATCT . 70.0 47.0 42.0 0.0 . 218 . . Atlas-SNP OR6M1 390261 hgsc.bcm.edu hg19 11 123676807 123676807 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . OR6M1 NM_001005325 exon1 c.T251A p.L84Q TCTCCTAGGAGGC . 103.0 52.0 83.0 0.0 . 60 . . Atlas-SNP B4GALNT3 283358 hgsc.bcm.edu hg19 12 663011 663011 + Missense_Mutation SNP G G T rs138791810 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . B4GALNT3 NM_173593 exon14 c.G1922T p.R641L GTGCCCGGAATCT . 177.0 36.0 117.0 0.0 . 64 . G|0.998;A|0.002 Atlas-SNP ERC1 23085 hgsc.bcm.edu hg19 12 1553897 1553897 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ERC1 NM_178040 exon18 c.A3194T p.Q1065L AGCTGCAGAAGAT . 135.0 59.0 87.0 0.0 . 95 . . Atlas-SNP PTPN6 5777 hgsc.bcm.edu hg19 12 7064872 7064872 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PTPN6 NM_080548 exon7 c.A803T p.Q268L AAGGGCAGCGGCC . 167.0 71.0 115.0 0.0 . 42 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49416526 49416526 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MLL2 NM_003482 exon51 c.G16185T p.W5395C GTTCTTCCATTCG . 168.0 77.0 114.0 0.0 . 1173 . . Atlas-SNP ACVRL1 94 hgsc.bcm.edu hg19 12 52309133 52309133 + Silent SNP T T A rs370666061 alternate_allele TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ACVRL1 NM_000020 exon7 c.T897A p.A299A TCTGGCTCTGAGG . 102.0 51.0 74.0 0.0 . 60 . . Atlas-SNP KRT1 3848 hgsc.bcm.edu hg19 12 53069093 53069093 + Missense_Mutation SNP C C G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KRT1 NM_006121 exon9 c.G1819C p.G607R AGCTCCCGCCGCC . 96.0 32.0 80.0 0.0 . 110 . . Atlas-SNP OR6C65 403282 hgsc.bcm.edu hg19 12 55795077 55795077 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . OR6C65 NM_001005518 exon1 c.T765A p.F255L CATTTTTATGTGT . 92.0 26.0 94.0 0.0 . 44 . . Atlas-SNP OR6C65 403282 hgsc.bcm.edu hg19 12 55795161 55795161 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . OR6C65 NM_001005518 exon1 c.G849T p.L283F TATGTTGAATCCC . 44.0 17.0 42.0 0.0 . 44 . . Atlas-SNP SOCS2 8835 hgsc.bcm.edu hg19 12 93968804 93968804 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SOCS2 NM_001270470 exon3 c.A446T p.H149L CTGTTCACCTTTA . 115.0 73.0 116.0 0.0 . 23 . . Atlas-SNP NTN4 59277 hgsc.bcm.edu hg19 12 96104336 96104336 + Missense_Mutation SNP T T C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . NTN4 NM_021229 exon5 c.A1063G p.S355G CACCACTACGATT . 74.0 16.0 85.0 0.0 . 67 . . Atlas-SNP SELPLG 6404 hgsc.bcm.edu hg19 12 109017504 109017504 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SELPLG NM_001206609 exon2 c.A628T p.T210S GTGCAGTGGTCTG . 92.0 26.0 99.0 0.0 . 138 . . Atlas-SNP DHX37 57647 hgsc.bcm.edu hg19 12 125435079 125435079 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . DHX37 NM_032656 exon23 c.G3001A p.V1001I ACTGGACCTCCAC . 66.0 22.0 120.0 0.0 . 114 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23909572 23909572 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SACS NM_014363 exon10 c.C8443A p.L2815I TAGTAAGATTTCC . 94.0 14.0 43.0 0.0 . 871 . . Atlas-SNP SUPT20H 55578 hgsc.bcm.edu hg19 13 37621713 37621713 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . . NM_001014286 exon5 c.G124T p.D42Y ACAAGTCATAAAG . 145.0 95.0 398.0 0.0 . . . . Atlas-SNP DIAPH3 81624 hgsc.bcm.edu hg19 13 60544097 60544097 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . DIAPH3 NM_001042517 exon17 c.A2055T p.T685T ACAAAATGTATTC . 236.0 184.0 142.0 0.0 . 139 . . Atlas-SNP NIN 51199 hgsc.bcm.edu hg19 14 51224347 51224347 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . NIN NM_020921 exon18 c.A3401T p.Q1134L TCTACTTGCTTCG . 81.0 67.0 98.0 0.0 . 475 . . Atlas-SNP KTN1 3895 hgsc.bcm.edu hg19 14 56113703 56113703 + Missense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KTN1 NM_004986 exon19 c.G2185A p.V729I AAGGATGTTGTGG . 43.0 34.0 57.0 0.0 . 147 . . Atlas-SNP AP5M1 55745 hgsc.bcm.edu hg19 14 57741303 57741303 + Missense_Mutation SNP A A C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . . NM_018229 exon2 c.A416C p.Q139P GGATACAGGATTT . 65.0 47.0 78.0 0.0 . . . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68219127 68219127 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ZFYVE26 NM_015346 exon40 c.A7305T p.A2435A TTTGGCTGCCATG . 72.0 43.0 72.0 0.0 . 223 . . Atlas-SNP JAG2 3714 hgsc.bcm.edu hg19 14 105609336 105609336 + Missense_Mutation SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . JAG2 NM_002226 exon26 c.T3413C p.I1138T CGCTCAATGGGGT . 10.0 9.0 22.0 0.0 . 69 . . Atlas-SNP PLA2G4F 255189 hgsc.bcm.edu hg19 15 42442915 42442915 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PLA2G4F NM_213600 exon8 c.T662A p.L221Q GGCTGCAGGGGCA . 45.0 11.0 62.0 0.0 . 75 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54305537 54305537 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . UNC13C NM_001080534 exon1 c.A437T p.H146L CAACACACACAAT . 126.0 36.0 117.0 0.0 . 674 . . Atlas-SNP ADAMTS7 11173 hgsc.bcm.edu hg19 15 79066995 79066995 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ADAMTS7 NM_014272 exon12 c.T1847A p.L616Q GTGTGCAGCTGGC . 12.0 5.0 36.0 0.0 . 142 . . Atlas-SNP RGMA 56963 hgsc.bcm.edu hg19 15 93588391 93588391 + Missense_Mutation SNP G G A rs201783150 by1000genomes;alternate_allele TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . RGMA NM_001166283 exon4 c.C1214T p.A405V TCCAACGCGTAGT . 87.0 41.0 113.0 0.0 . 49 . G|1.000;T|0.000 Atlas-SNP DOC2A 8448 hgsc.bcm.edu hg19 16 30018203 30018203 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . DOC2A NM_003586 exon8 c.T781A p.Y261N AGCTGTAGCTGAG . 92.0 53.0 109.0 0.0 . 40 . . Atlas-SNP ITGAD 3681 hgsc.bcm.edu hg19 16 31429500 31429500 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ITGAD NM_005353 exon21 c.T2604A p.H868Q CTTCCATGAGGGC . 96.0 26.0 71.0 0.0 . 154 . . Atlas-SNP ADAT1 23536 hgsc.bcm.edu hg19 16 75642206 75642206 + Missense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ADAT1 NM_012091 exon9 c.C1205T p.A402V GGAACTGCACTCC . 79.0 20.0 59.0 0.0 . 45 . . Atlas-SNP ARRB2 409 hgsc.bcm.edu hg19 17 4619957 4619957 + Silent SNP T T G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ARRB2 NM_001257328 exon5 c.T411G p.S137S TGTGTCTGGGGTG . 24.0 12.0 30.0 0.0 . 30 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7643760 7643760 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . DNAH2 NM_020877 exon9 c.C1399A p.L467M AAGGACCTGGAGG . 59.0 49.0 106.0 0.0 . 498 . . Atlas-SNP MYH4 4622 hgsc.bcm.edu hg19 17 10348322 10348322 + Missense_Mutation SNP T T G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MYH4 NM_017533 exon37 c.A5437C p.K1813Q GCTTCTTCCCACC . 76.0 57.0 91.0 0.0 . 349 . . Atlas-SNP MYOCD 93649 hgsc.bcm.edu hg19 17 12569544 12569544 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MYOCD NM_001146312 exon1 c.G39T p.R13S GATTAGGAGCAAG . 46.0 39.0 77.0 0.0 . 291 . . Atlas-SNP RAPGEFL1 51195 hgsc.bcm.edu hg19 17 38348509 38348509 + Silent SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . RAPGEFL1 NM_016339 exon11 c.C1032T p.N344N TGAGAACCTGACG . 42.0 5.0 70.0 0.0 . 31 . . Atlas-SNP KRT12 3859 hgsc.bcm.edu hg19 17 39022937 39022937 + Missense_Mutation SNP T T A rs377161982 TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KRT12 NM_000223 exon1 c.A502T p.T168S CTGCAGTCCCAGT . 98.0 47.0 104.0 0.0 . 53 . . Atlas-SNP KCNH4 23415 hgsc.bcm.edu hg19 17 40330402 40330402 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KCNH4 NM_012285 exon3 c.A404T p.Q135L CCACTCTGAGTGA . 91.0 37.0 117.0 0.0 . 105 . . Atlas-SNP TRIM47 91107 hgsc.bcm.edu hg19 17 73871178 73871178 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TRIM47 NM_033452 exon6 c.G1303A p.D435N CTGTGTCGCTGTC . 146.0 12.0 42.0 0.0 . 40 . . Atlas-SNP QRICH2 84074 hgsc.bcm.edu hg19 17 74288478 74288478 + Missense_Mutation SNP T T C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . QRICH2 NM_032134 exon4 c.A1832G p.D611G TGCTGATCCACTC . 138.0 10.0 77.0 0.0 . 143 . . Atlas-SNP RAC3 5881 hgsc.bcm.edu hg19 17 79991460 79991460 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . RAC3 NM_005052 exon5 c.A433T p.M145L CTGGCCATGGCCC . 375.0 17.0 75.0 0.0 . 8 . . Atlas-SNP TUBB6 84617 hgsc.bcm.edu hg19 18 12310993 12310993 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TUBB6 NM_032525 exon3 c.T218A p.M73K GCACCATGGACAG . 96.0 44.0 78.0 0.0 . 35 . . Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21474874 21474874 + Missense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LAMA3 NM_001127717 exon44 c.G5465A p.C1822Y CAGATTGCGACAG . 52.0 14.0 38.0 0.0 . 397 . . Atlas-SNP KIAA1328 57536 hgsc.bcm.edu hg19 18 34752988 34752988 + Silent SNP A A C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KIAA1328 NM_020776 exon9 c.A1467C p.G489G AACAGGAAGCCTA . 95.0 9.0 89.0 0.0 . 39 . . Atlas-SNP LOXHD1 125336 hgsc.bcm.edu hg19 18 44140460 44140460 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LOXHD1 NM_144612 exon19 c.A2647T p.T883S CGCCCGTGTGCCC . 727.0 219.0 658.0 0.0 . 367 . . Atlas-SNP PHLPP1 23239 hgsc.bcm.edu hg19 18 60642658 60642658 + Missense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PHLPP1 NM_194449 exon16 c.G3784A p.G1262S AAGCTTGGTGGTG . 83.0 25.0 56.0 0.0 . 164 . . Atlas-SNP SERPINB13 5275 hgsc.bcm.edu hg19 18 61256029 61256029 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SERPINB13 NM_012397 exon2 c.T128A p.L43Q TCCTCCTGGGGAC . 48.0 27.0 41.0 0.0 . 51 . . Atlas-SNP RTTN 25914 hgsc.bcm.edu hg19 18 67671402 67671402 + Silent SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . RTTN NM_173630 exon49 c.C6666A p.L2222L ATTAAGGAGCTGC . 66.0 12.0 67.0 0.0 . 184 . . Atlas-SNP C19orf26 255057 hgsc.bcm.edu hg19 19 1233486 1233486 + Silent SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . C19orf26 NM_152769 exon8 c.T918C p.Y306Y CTTGAAATAGGGG . 156.0 65.0 108.0 0.0 . 31 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9087179 9087179 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MUC16 NM_024690 exon1 c.A4636T p.S1546C TCACACTGGTCCA . 156.0 77.0 127.0 0.0 . 4315 . . Atlas-SNP ZSWIM4 65249 hgsc.bcm.edu hg19 19 13936403 13936403 + Missense_Mutation SNP A A C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ZSWIM4 NM_023072 exon11 c.A1904C p.Q635P CCATCCAGCAGAA . 66.0 15.0 52.0 0.0 . 69 . . Atlas-SNP ZSWIM4 65249 hgsc.bcm.edu hg19 19 13936406 13936406 + Missense_Mutation SNP A A C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ZSWIM4 NM_023072 exon11 c.A1907C p.Q636P TCCAGCAGAACAT . 65.0 15.0 51.0 0.0 . 69 . . Atlas-SNP NANOS3 342977 hgsc.bcm.edu hg19 19 13988410 13988410 + Silent SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . NANOS3 NM_001098622 exon1 c.C348A p.G116G GTGCGGCGCCACA . 46.0 17.0 30.0 0.0 . 19 . . Atlas-SNP ZNF383 163087 hgsc.bcm.edu hg19 19 37733636 37733636 + Missense_Mutation SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ZNF383 NM_152604 exon5 c.A498T p.E166D TAATGAAGACAGA . 150.0 63.0 116.0 0.0 . 42 . . Atlas-SNP CATSPERG 57828 hgsc.bcm.edu hg19 19 38857882 38857882 + Silent SNP C C G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CATSPERG NM_021185 exon23 c.C2700G p.R900R CAGCCGCCTGAAG . 49.0 17.0 22.0 0.0 . 121 . . Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40398324 40398324 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FCGBP NM_003890 exon14 c.A6643T p.N2215Y CCTGGTTGTAGTT . 172.0 51.0 131.0 0.0 . 416 . . Atlas-SNP BSPH1 100131137 hgsc.bcm.edu hg19 19 48480713 48480713 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . BSPH1 NM_001128326 exon4 c.A173T p.D58V ATGCAGTCATAAT . 90.0 52.0 94.0 0.0 . 6 . . Atlas-SNP ZNF880 400713 hgsc.bcm.edu hg19 19 52877651 52877651 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ZNF880 NM_001145434 exon3 c.G239T p.G80V CAGGTGGCAGGGA . 211.0 10.0 169.0 0.0 . 45 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55495067 55495067 + Silent SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . NLRP2 NM_017852 exon6 c.T2001A p.T667T TGTCACTGCGTCT . 21.0 10.0 31.0 0.0 . 161 . . Atlas-SNP SNTA1 6640 hgsc.bcm.edu hg19 20 32026678 32026678 + Silent SNP G G C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SNTA1 NM_003098 exon2 c.C465G p.L155L CTTCTTGAGGACC . 155.0 26.0 81.0 0.0 . 35 . . Atlas-SNP PREX1 57580 hgsc.bcm.edu hg19 20 47268095 47268095 + Missense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PREX1 NM_020820 exon22 c.C2494T p.R832W TCAGCCGGGGACC . 45.0 13.0 50.0 0.0 . 441 . . Atlas-SNP ARFGAP1 55738 hgsc.bcm.edu hg19 20 61919056 61919056 + Missense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ARFGAP1 NM_175609 exon14 c.G1076A p.C359Y GGACGTGCGCGGA . 116.0 30.0 102.0 0.0 . 38 . . Atlas-SNP KCNQ2 3785 hgsc.bcm.edu hg19 20 62038313 62038313 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KCNQ2 NM_172107 exon17 c.A2303T p.Q768L TCCTCCTGCCGCA . 224.0 124.0 180.0 0.0 . 201 . . Atlas-SNP ADAMTS5 11096 hgsc.bcm.edu hg19 21 28338522 28338522 + Silent SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ADAMTS5 NM_007038 exon1 c.C189A p.P63P CGCCAGGGGGTGC . 97.0 60.0 63.0 0.0 . 184 . . Atlas-SNP TTC3 7267 hgsc.bcm.edu hg19 21 38567975 38567975 + Splice_Site SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TTC3 NM_001001894 exon42 c.5218-1G>A . CTCACAGGTTCAT . 176.0 48.0 144.0 0.0 . 182 . . Atlas-SNP TTC3 7267 hgsc.bcm.edu hg19 21 38567997 38567997 + Nonsense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TTC3 NM_001001894 exon42 c.G5239T p.E1747X CTCCCTGAGTCTT . 168.0 44.0 151.0 0.0 . 182 . . Atlas-SNP KRTAP10-10 353333 hgsc.bcm.edu hg19 21 46057580 46057580 + Silent SNP G G T rs150687639 alternate_allele TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KRTAP10-10 NM_181688 exon1 c.G246T p.P82P CCAGCCGGATTGC . 36.0 14.0 31.0 0.0 . 37 . G|0.999;A|0.001 Atlas-SNP SCARF2 91179 hgsc.bcm.edu hg19 22 20784091 20784091 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SCARF2 NM_182895 exon7 c.A1232T p.H411L GCGCCGTGGAGTC . 88.0 40.0 118.0 0.0 . 23 . . Atlas-SNP KLHL22 84861 hgsc.bcm.edu hg19 22 20819206 20819206 + Missense_Mutation SNP C C T rs372979261 TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 KLHL22,colon,carcinoma,0,1 KLHL22 NM_032775 exon4 c.G1051A p.V351I AGTATACGAAGTT . 31.0 10.0 48.0 0.0 . 52 . . Atlas-SNP PLXNB2 23654 hgsc.bcm.edu hg19 22 50722376 50722376 + Silent SNP C C G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PLXNB2 NM_012401 exon14 c.G2307C p.L769L CCGGCACAGGCTG . 32.0 10.0 40.0 0.0 . 172 . . Atlas-SNP TBL1X 6907 hgsc.bcm.edu hg19 X 9677307 9677307 + Missense_Mutation SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TBL1X NM_001139466 exon14 c.A1256G p.K419R CCATCAAATGGGA . 135.0 50.0 169.0 0.0 . 103 . . Atlas-SNP PHF16 9767 hgsc.bcm.edu hg19 X 46893038 46893038 + Missense_Mutation SNP C C T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PHF16 NM_001077445 exon7 c.C703T p.L235F GGCATCCTCAAGG . 186.0 9.0 118.0 0.0 . 72 . . Atlas-SNP IQSEC2 23096 hgsc.bcm.edu hg19 X 53279807 53279807 + Missense_Mutation SNP G G T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . IQSEC2 NM_001111125 exon5 c.C1951A p.P651T CTTCAGGGGCTGG . 80.0 22.0 73.0 0.0 . 195 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53591649 53591649 + Silent SNP A A G novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . HUWE1 NM_031407 exon51 c.T6915C p.D2305D ATCATGATCCTCC . 78.0 23.0 71.0 0.0 . 724 . . Atlas-SNP APEX2 27301 hgsc.bcm.edu hg19 X 55026952 55026952 + Missense_Mutation SNP G G A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . APEX2 NM_014481 exon1 c.G97A p.G33R GCCGTGGGGCGCA . 143.0 48.0 128.0 0.0 . 50 . . Atlas-SNP MED12 9968 hgsc.bcm.edu hg19 X 70354642 70354642 + Missense_Mutation SNP C C A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . MED12 NM_005120 exon35 c.C4807A p.Q1603K ATCTCGCAAGGTA . 188.0 61.0 199.0 0.0 . 984 . . Atlas-SNP LRCH2 57631 hgsc.bcm.edu hg19 X 114404863 114404863 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LRCH2 NM_001243963 exon6 c.A997T p.S333C ATTACCTGTCTGT . 197.0 54.0 202.0 0.0 . 138 . . Atlas-SNP ARHGAP36 158763 hgsc.bcm.edu hg19 X 130215821 130215821 + Missense_Mutation SNP T T A novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ARHGAP36 NM_144967 exon2 c.T182A p.L61Q AGCGTCTGAAGCT . 99.0 27.0 88.0 0.0 . 171 . . Atlas-SNP SLITRK2 84631 hgsc.bcm.edu hg19 X 144906061 144906061 + Silent SNP A A T novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . SLITRK2 NM_001144005 exon5 c.A2118T p.G706G GGAAGGAGACCCA . 171.0 53.0 149.0 0.0 . 221 . . Atlas-SNP PLXNA3 55558 hgsc.bcm.edu hg19 X 153690520 153690520 + Missense_Mutation SNP G G C novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . PLXNA3 NM_017514 exon4 c.G1187C p.G396A CTCTGGGAGGCCT . 154.0 37.0 174.0 0.0 . 156 . . Atlas-SNP LHFPL4 375323 hgsc.bcm.edu hg19 3 9594117 9594130 + Frame_Shift_Del DEL CGGTGAAGGAGCCC CGGTGAAGGAGCCC - novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 CGGTGAAGGAGCCC CGGTGAAGGAGCCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . LHFPL4 NM_198560 exon2 c.235_248del p.79_83del . . 101.0 11.0 107.0 0.0 . 34 . . Atlas-INDEL OR6C65 403282 hgsc.bcm.edu hg19 12 55795097 55795097 + Frame_Shift_Del DEL C C - novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 OR6C65,NS,carcinoma,0,1 OR6C65 NM_001005518 exon1 c.784delG p.A262fs . . 83.0 26.0 84.0 0.0 . 44 . . Atlas-INDEL KRTAP29-1 100533177 hgsc.bcm.edu hg19 17 39458442 39458443 + Frame_Shift_Del DEL TA TA - novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 TA TA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . KRTAP29-1 NM_001257309 exon1 c.662_663del p.221_221del . . 104.0 39.0 134.0 0.0 . 2 . . Atlas-INDEL CBX4 8535 hgsc.bcm.edu hg19 17 77808241 77808246 + In_Frame_Del DEL GTGGTG GTGGTG - rs3833850 alternate_allele TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 GTGGTG GTGGTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . CBX4 NM_003655 exon5 c.1196_1201del p.399_401del . . 49.0 19.0 9.0 0.0 . 40 . . Atlas-INDEL ELAVL2 1993 hgsc.bcm.edu hg19 9 23731126 23731126 + Splice_Site DEL A A - novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . ELAVL2 NM_004432 exon4 c.230-2T>- . . . 50.0 11.0 31.0 0.0 . 80 . . Atlas-INDEL FAM131C 348487 hgsc.bcm.edu hg19 1 16390079 16390092 + Frame_Shift_Del DEL GGGGTCCGCACCCT GGGGTCCGCACCCT - novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 GGGGTCCGCACCCT GGGGTCCGCACCCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . FAM131C NM_182623 exon2 c.63_76del p.21_26del . . 65.0 17.0 100.0 0.0 . 21 . . Atlas-INDEL TRPC6 7225 hgsc.bcm.edu hg19 11 101375006 101375006 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 . TRPC6 NM_004621 exon2 c.695delA p.Y232fs . . 63.0 13.0 51.0 0.0 . 132 . . Atlas-INDEL CDC42BPA 8476 hgsc.bcm.edu hg19 1 227204675 227204675 + Frame_Shift_Del DEL C C - novel TCGA-DD-AADF-01A-11D-A40R-10 TCGA-DD-AADF-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a59f4ad7-f2cf-4109-b2e9-fa35260a2fe0 87a7ce38-2b8a-42a0-b22f-33534f342ff4 CDC42BPA_ENST00000366769,colon,carcinoma,0,3 CDC42BPA NM_003607 exon32 c.4588delC p.R1530fs . . 106.0 31.0 103.0 0.0 . 528 . . Atlas-INDEL