Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
EDN2	1907	hgsc.bcm.edu	hg19	1	41948170	41948170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	EDN2	NM_001956	exon3	c.C311A	p.P104H	CAGGCGGGGTCCC	.	88.0	22.0	74.0	0.0	.	12	.	.	Atlas-SNP
FUBP1	8880	hgsc.bcm.edu	hg19	1	78444594	78444594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	FUBP1	NM_003902	exon1	c.A95G	p.K32R	GCATCTTTGAAAG	.	63.0	34.0	53.0	0.0	.	112	.	.	Atlas-SNP
SLC16A4	9122	hgsc.bcm.edu	hg19	1	110921555	110921555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SLC16A4	NM_004696	exon6	c.T950G	p.I317S	GTAGGGATGAAGT	.	190.0	108.0	161.0	0.0	.	47	.	.	Atlas-SNP
WDR77	79084	hgsc.bcm.edu	hg19	1	111986674	111986674	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	WDR77	NM_024102	exon6	c.564+2T>G	.	TCTCTTACCTCGC	.	297.0	153.0	279.0	0.0	.	21	.	.	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120480003	120480003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	NOTCH2	NM_001200001	exon21	c.A3424G	p.T1142A	TCCCAGTATAGCC	.	132.0	61.0	115.0	0.0	.	348	.	.	Atlas-SNP
CLK2	1196	hgsc.bcm.edu	hg19	1	155233082	155233082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	CLK2	NM_003993	exon13	c.A1424T	p.H475L	AAAGGATGCTGAA	.	101.0	63.0	58.0	0.0	.	55	.	.	Atlas-SNP
SMG7	9887	hgsc.bcm.edu	hg19	1	183515342	183515342	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SMG7	NM_173156	exon17	c.G2612A	p.W871X	TCTACTGGGATTC	.	259.0	124.0	203.0	0.0	.	165	.	.	Atlas-SNP
C1orf101	257044	hgsc.bcm.edu	hg19	1	244735632	244735632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	C1orf101	NM_173807	exon11	c.A1508G	p.D503G	TTCCAGATTATTA	.	375.0	169.0	341.0	0.0	.	158	.	.	Atlas-SNP
MAPRE3	22924	hgsc.bcm.edu	hg19	2	27245167	27245167	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	MAPRE3	NM_012326	exon2	c.C81T	p.S27S	CGACTCCCTGCAC	.	70.0	12.0	78.0	0.0	.	40	.	.	Atlas-SNP
CCDC104	112942	hgsc.bcm.edu	hg19	2	55750945	55750945	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	CCDC104	NM_080667	exon3	c.C269G	p.T90S	CAAAGACCCATAC	.	259.0	81.0	300.0	0.0	.	35	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10384604	10384604	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	ATP2B2	NM_001001331	exon19	c.A2749T	p.M917L	TGTCCATGATGAG	.	84.0	39.0	64.0	0.0	.	304	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A	rs121913400	bycluster	TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	CTNNB1,gallbladder,other,0,359	CTNNB1	NM_001098209	exon3	c.C98A	p.S33Y	TGGACTCTGGAAT	.	142.0	54.0	186.0	0.0	.	4904	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47161866	47161866	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SETD2	NM_014159	exon3	c.G4260A	p.E1420E	CTGAAGCTCACCA	.	116.0	24.0	146.0	0.0	.	721	.	.	Atlas-SNP
NIT2	56954	hgsc.bcm.edu	hg19	3	100059950	100059950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	NIT2	NM_020202	exon4	c.A281G	p.Y94C	AATTATATAACAC	.	100.0	40.0	92.0	0.0	.	35	.	.	Atlas-SNP
WDR5B	54554	hgsc.bcm.edu	hg19	3	122133978	122133978	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	WDR5B	NM_019069	exon1	c.T398G	p.F133C	GGATTGAAGTTAC	.	97.0	45.0	160.0	0.0	.	36	.	.	Atlas-SNP
WDR5B	54554	hgsc.bcm.edu	hg19	3	122133991	122133991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	WDR5B	NM_019069	exon1	c.T385G	p.F129V	AACAAAAGACATA	.	94.0	42.0	160.0	0.0	.	36	.	.	Atlas-SNP
MYLK	4638	hgsc.bcm.edu	hg19	3	123452969	123452969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	MYLK,colon,carcinoma,0,1	MYLK	NM_053025	exon10	c.G874A	p.A292T	TTTTGGCTGCAGC	.	823.0	376.0	934.0	0.0	.	224	.	.	Atlas-SNP
EMCN	51705	hgsc.bcm.edu	hg19	4	101401107	101401107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	EMCN	NM_001159694	exon2	c.G154A	p.V52I	TGACAACATTTTT	.	82.0	41.0	109.0	0.0	.	37	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126371527	126371527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	FAT4	NM_024582	exon9	c.C9356T	p.A3119V	ATGCAGCGATGAA	.	64.0	15.0	118.0	0.0	.	1752	.	.	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	hg19	5	38967502	38967502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	RICTOR	NM_152756	exon13	c.G1088A	p.R363K	GAAAGCCTCCAAC	.	100.0	90.0	154.0	0.0	.	182	.	.	Atlas-SNP
PCDHA10	56139	hgsc.bcm.edu	hg19	5	140235813	140235813	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	PCDHA10	NM_031859	exon1	c.G180A	p.Q60Q	GGTGCAGCGCCTG	.	123.0	104.0	182.0	0.0	.	358	.	.	Atlas-SNP
POM121L2	94026	hgsc.bcm.edu	hg19	6	27277263	27277263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	POM121L2	NM_033482	exon1	c.C2687G	p.T896S	ATAGGGGTCACGA	.	105.0	69.0	128.0	0.0	.	61	.	.	Atlas-SNP
CFB	629	hgsc.bcm.edu	hg19	6	31918947	31918947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	CFB	NM_001710	exon15	c.A1882G	p.I628V	CAGGATATCAAAG	.	53.0	31.0	76.0	0.0	.	33	.	.	Atlas-SNP
MDGA1	266727	hgsc.bcm.edu	hg19	6	37614143	37614143	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	MDGA1	NM_153487	exon11	c.G2055A	p.Q685Q	ATTGTGCTGGTTC	.	43.0	29.0	57.0	0.0	.	104	.	.	Atlas-SNP
GLTSCR1L	23506	hgsc.bcm.edu	hg19	6	42797158	42797158	+	Missense_Mutation	SNP	A	A	T	rs367929984	alternate_allele	TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	.	NM_015349	exon5	c.A1087T	p.I363F	GTGAACATTGTAA	.	70.0	12.0	95.0	0.0	.	.	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51609283	51609283	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	PKHD1	NM_170724	exon60	c.T10056C	p.Y3352Y	GAAGAGATATTTT	.	68.0	12.0	81.0	0.0	.	927	.	.	Atlas-SNP
GRIK2	2898	hgsc.bcm.edu	hg19	6	102503227	102503227	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	GRIK2	NM_021956	exon15	c.T2334G	p.I778M	CAAAATTACCATA	.	86.0	9.0	135.0	0.0	.	487	.	.	Atlas-SNP
SYNJ2	8871	hgsc.bcm.edu	hg19	6	158510898	158510898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SYNJ2	NM_003898	exon25	c.C3484T	p.P1162S	AGTAAACCTTATA	.	79.0	18.0	102.0	0.0	.	111	.	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	hg19	7	20199561	20199561	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	MACC1	NM_182762	exon5	c.A423C	p.S141S	AAGTTCTGAAACA	.	81.0	33.0	88.0	0.0	.	99	.	.	Atlas-SNP
HOXA7	3204	hgsc.bcm.edu	hg19	7	27194719	27194719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	HOXA7	NM_006896	exon2	c.T502G	p.C168G	TGAGGCAGAGCGC	.	129.0	58.0	152.0	0.0	.	34	.	.	Atlas-SNP
TBX20	57057	hgsc.bcm.edu	hg19	7	35293157	35293157	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	TBX20	NM_001077653	exon1	c.G75C	p.S25S	GCCGCTCGACATG	.	52.0	27.0	44.0	0.0	.	96	.	.	Atlas-SNP
RALA	5898	hgsc.bcm.edu	hg19	7	39730078	39730078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	RALA	NM_005402	exon3	c.G212A	p.G71E	CAGCTGGGCAGGA	.	110.0	46.0	115.0	0.0	.	39	.	.	Atlas-SNP
CNPY4	245812	hgsc.bcm.edu	hg19	7	99720107	99720107	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	CNPY4	NM_152755	exon3	c.G249A	p.E83E	CAGAGAGACAAGG	.	103.0	60.0	110.0	0.0	.	18	.	.	Atlas-SNP
RMDN1	51115	hgsc.bcm.edu	hg19	8	87519286	87519286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	.	NM_016033	exon2	c.A185G	p.Y62C	CCCAAATACGACA	.	303.0	172.0	224.0	0.0	.	.	.	.	Atlas-SNP
OXR1	55074	hgsc.bcm.edu	hg19	8	107531242	107531242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	OXR1	NM_001198532	exon2	c.A98T	p.Q33L	GAAAGCAAACACC	.	277.0	127.0	271.0	0.0	.	190	.	.	Atlas-SNP
EIF3E	3646	hgsc.bcm.edu	hg19	8	109226891	109226891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	EIF3E	NM_001568	exon10	c.G1006A	p.A336T	GACGGGCATTTTC	.	362.0	186.0	353.0	0.0	.	73	.	.	Atlas-SNP
KIAA0020	9933	hgsc.bcm.edu	hg19	9	2812219	2812219	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	KIAA0020	NM_014878	exon15	c.1412+1G>A	.	GTTTTACCTGTGT	.	60.0	51.0	103.0	0.0	.	56	.	.	Atlas-SNP
OR2K2	26248	hgsc.bcm.edu	hg19	9	114089907	114089907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	OR2K2	NM_205859	exon1	c.A807G	p.I269M	TTTGTCTATTTTT	.	169.0	148.0	167.0	0.0	.	77	.	.	Atlas-SNP
ARPC5L	81873	hgsc.bcm.edu	hg19	9	127631658	127631658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	ARPC5L	NM_030978	exon1	c.C89A	p.A30E	AGGAGGCGGCGGC	.	125.0	5.0	117.0	0.0	.	8	.	.	Atlas-SNP
TDRD1	56165	hgsc.bcm.edu	hg19	10	115966040	115966040	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	TDRD1	NM_198795	exon11	c.T1335A	p.Y445X	GGGATATGGCTTG	.	102.0	75.0	127.0	0.0	.	126	.	.	Atlas-SNP
OR51A4	401666	hgsc.bcm.edu	hg19	11	4967515	4967515	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	OR51A4	NM_001005329	exon1	c.C816G	p.L272L	ATTAATGAGGGGA	.	347.0	26.0	571.0	0.0	.	73	.	.	Atlas-SNP
RRP8	23378	hgsc.bcm.edu	hg19	11	6622002	6622002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	RRP8	NM_015324	exon5	c.C1051T	p.P351S	CCAGAGGAACCTG	.	80.0	48.0	115.0	0.0	.	40	.	.	Atlas-SNP
OR5I1	10798	hgsc.bcm.edu	hg19	11	55703134	55703134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	OR5I1	NM_006637	exon1	c.C743A	p.T248N	ACTGAAGTCAGGT	.	95.0	26.0	142.0	0.0	.	110	.	.	Atlas-SNP
DTX4	23220	hgsc.bcm.edu	hg19	11	58949569	58949569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	DTX4_ENST00000227451,NS,carcinoma,0,2	DTX4	NM_015177	exon2	c.C569T	p.S190F	CCTGCTCCTGTCC	.	37.0	18.0	72.0	0.0	.	84	.	.	Atlas-SNP
SCYL1	57410	hgsc.bcm.edu	hg19	11	65302729	65302729	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SCYL1	NM_020680	exon10	c.A1262C	p.E421A	TGAACGAGGCCAA	.	50.0	15.0	96.0	0.0	.	76	.	.	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121458790	121458790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SORL1	NM_003105	exon28	c.C3876A	p.H1292Q	GTTCCACTCCATG	.	57.0	29.0	52.0	0.0	.	218	.	.	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	hg19	11	129754739	129754739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	NFRKB	NM_006165	exon5	c.C718T	p.L240F	AGCTGAGATCTTC	.	66.0	18.0	73.0	0.0	.	101	.	.	Atlas-SNP
ANO2	57101	hgsc.bcm.edu	hg19	12	5841762	5841762	+	Missense_Mutation	SNP	C	C	T	rs375457985		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	ANO2	NM_020373	exon15	c.G1469A	p.R490Q	TTCTCTCGAACTT	.	63.0	44.0	90.0	0.0	.	309	.	.	Atlas-SNP
USP5	8078	hgsc.bcm.edu	hg19	12	6961443	6961443	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	USP5	NM_003481	exon1	c.T100G	p.F34V	TTCTCCTTCGACA	.	32.0	16.0	34.0	0.0	.	124	.	.	Atlas-SNP
RIMKLB	57494	hgsc.bcm.edu	hg19	12	8866531	8866531	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	RIMKLB	NM_020734	exon3	c.A69G	p.Q23Q	TCCTCAAAAAGAG	.	63.0	5.0	108.0	0.0	.	47	.	.	Atlas-SNP
KIF21A	55605	hgsc.bcm.edu	hg19	12	39735325	39735325	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	KIF21A	NM_001173464	exon14	c.T1903G	p.S635A	ATTCAGAATCTGA	.	44.0	14.0	66.0	0.0	.	238	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43826591	43826591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	ADAMTS20	NM_025003	exon20	c.A2744G	p.E915G	GAACATTCACTTT	.	108.0	30.0	127.0	0.0	.	635	.	.	Atlas-SNP
PUS7L	83448	hgsc.bcm.edu	hg19	12	44149046	44149046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	PUS7L	NM_001098614	exon2	c.G3T	p.M1I	TTCTTCCATTCTT	.	226.0	143.0	314.0	0.0	.	73	.	.	Atlas-SNP
AQP2	359	hgsc.bcm.edu	hg19	12	50344682	50344682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	AQP2	NM_000486	exon1	c.C69A	p.F23L	CCTCTTCGTCTTC	.	36.0	6.0	56.0	0.0	.	34	.	.	Atlas-SNP
DIP2B	57609	hgsc.bcm.edu	hg19	12	51064971	51064971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	DIP2B	NM_173602	exon5	c.A430G	p.T144A	ACAGACACATCTT	.	34.0	10.0	50.0	0.0	.	167	.	.	Atlas-SNP
GRIP1	23426	hgsc.bcm.edu	hg19	12	66786264	66786264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	GRIP1	NM_001178074	exon18	c.C2132T	p.P711L	TTCTTGGGGCTCG	.	103.0	64.0	142.0	0.0	.	106	.	.	Atlas-SNP
TRHDE	29953	hgsc.bcm.edu	hg19	12	73014936	73014936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	TRHDE	NM_013381	exon14	c.C2383A	p.P795T	GGGTGGCCGAAAA	.	110.0	61.0	143.0	0.0	.	194	.	.	Atlas-SNP
ZNF10	7556	hgsc.bcm.edu	hg19	12	133732822	133732822	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	ZNF10	NM_015394	exon5	c.C990T	p.F330F	ATCCTTCAGCTGG	.	71.0	21.0	90.0	0.0	.	58	.	.	Atlas-SNP
PROSER1	80209	hgsc.bcm.edu	hg19	13	39587547	39587547	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	C13orf23,rectum,carcinoma,0,1	.	NM_025138	exon11	c.T1842C	p.P614P	GGGAGTAGGACTT	.	50.0	2.0	103.0	0.0	.	.	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103392098	103392098	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	.	NM_001146197	exon4	c.A10949C	p.N3650T	TTAACATTACTTG	.	111.0	19.0	66.0	0.0	.	.	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103392683	103392683	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	.	NM_001146197	exon4	c.G10364C	p.R3455T	TCTAGTCTATTCT	.	115.0	16.0	84.0	0.0	.	.	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103392726	103392726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	.	NM_001146197	exon4	c.G10321C	p.D3441H	ACAAGTCTAGTCC	.	108.0	12.0	85.0	0.0	.	.	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103392758	103392758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	.	NM_001146197	exon4	c.G10289T	p.G3430V	TTACCTCCTTCTG	.	103.0	14.0	86.0	0.0	.	.	.	.	Atlas-SNP
COCH	1690	hgsc.bcm.edu	hg19	14	31355229	31355229	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	COCH	NM_004086	exon11	c.T1188G	p.T396T	CAAGACTTTTGAA	.	65.0	56.0	117.0	0.0	.	54	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45618114	45618114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	FANCM	NM_020937	exon4	c.G834T	p.L278F	TATTTTGACATAT	.	43.0	37.0	106.0	0.0	.	225	.	.	Atlas-SNP
SMEK1	55671	hgsc.bcm.edu	hg19	14	91943274	91943274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SMEK1	NM_032560	exon6	c.T972A	p.D324E	TTCCTCATCTGTT	.	110.0	90.0	202.0	0.0	.	94	.	.	Atlas-SNP
PPP4R4	57718	hgsc.bcm.edu	hg19	14	94711989	94711989	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	PPP4R4	NM_058237	exon13	c.C1410T	p.S470S	AGAAAGCAGTGTT	.	151.0	7.0	276.0	0.0	.	107	.	.	Atlas-SNP
APBA2	321	hgsc.bcm.edu	hg19	15	29406146	29406146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	APBA2	NM_005503	exon13	c.A2105G	p.E702G	TCATCGAGATCAA	.	51.0	26.0	72.0	0.0	.	132	.	.	Atlas-SNP
LPCAT4	254531	hgsc.bcm.edu	hg19	15	34651465	34651465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	LPCAT4	NM_153613	exon14	c.G1438A	p.G480R	GTTTCCCATAGAG	.	105.0	44.0	102.0	0.0	.	36	.	.	Atlas-SNP
TMEM87A	25963	hgsc.bcm.edu	hg19	15	42536362	42536362	+	Missense_Mutation	SNP	T	T	C	rs145141787	bycluster	TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	TMEM87A	NM_015497	exon7	c.A508G	p.M170V	CATGCATTGCCTA	.	154.0	66.0	170.0	0.0	.	56	.	T|1.000;C|0.000	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	hg19	15	45437208	45437208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	DUOX1	NM_017434	exon19	c.T2252A	p.M751K	AGCTGATGAGAGC	.	106.0	52.0	110.0	0.0	.	125	.	.	Atlas-SNP
WDR72	256764	hgsc.bcm.edu	hg19	15	53992110	53992110	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	WDR72,NS,carcinoma,0,2	WDR72	NM_182758	exon13	c.C1602T	p.C534C	GTCACCGCACACA	.	149.0	58.0	163.0	0.0	.	177	.	.	Atlas-SNP
SCAMP2	10066	hgsc.bcm.edu	hg19	15	75142867	75142867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SCAMP2	NM_005697	exon6	c.A620G	p.Y207C	GCCTTATAGATGG	.	81.0	35.0	87.0	0.0	.	18	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666	alternate_allele	TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	TP53_ENST00000545858,NS,carcinoma,0,1	TP53	NM_000546	exon6	c.A659G	p.Y220C	GGCTCATAGGGCA	.	54.0	48.0	124.0	0.0	.	33396	.	.	Atlas-SNP
UTP6	55813	hgsc.bcm.edu	hg19	17	30207638	30207638	+	Missense_Mutation	SNP	C	C	A	rs139786553	alternate_allele	TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	UTP6,NS,carcinoma,0,1	UTP6	NM_018428	exon11	c.G921T	p.E307D	GCACCTCTCCTCC	.	72.0	32.0	83.0	0.0	.	46	.	C|1.000;G|0.000	Atlas-SNP
MOCOS	55034	hgsc.bcm.edu	hg19	18	33775294	33775294	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	MOCOS	NM_017947	exon2	c.A217T	p.M73L	GATCTCATGGAAA	.	86.0	44.0	114.0	0.0	.	84	.	.	Atlas-SNP
PIGN	23556	hgsc.bcm.edu	hg19	18	59757812	59757812	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	PIGN	NM_012327	exon24	c.2181-1G>A	.	TCATACCTAACAG	.	79.0	23.0	88.0	0.0	.	62	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9026242	9026242	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	MUC16	NM_024690	exon14	c.T36744A	p.R12248R	AGTGCGACGCATG	.	73.0	30.0	119.0	0.0	.	4315	.	.	Atlas-SNP
NXNL1	115861	hgsc.bcm.edu	hg19	19	17571605	17571605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	NXNL1	NM_138454	exon1	c.A74C	p.E25A	CTGACCTCAGCCT	.	25.0	8.0	54.0	0.0	.	13	.	.	Atlas-SNP
DBP	1628	hgsc.bcm.edu	hg19	19	49134159	49134159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	DBP	NM_001352	exon4	c.C913A	p.R305S	CCTGGCGCACGGC	.	63.0	31.0	121.0	0.0	.	16	.	.	Atlas-SNP
TARM1	441864	hgsc.bcm.edu	hg19	19	54579163	54579163	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	TARM1	NM_001135686	exon2	c.C42T	p.C14C	GCCCACGCACAGT	.	59.0	34.0	51.0	0.0	.	10	.	.	Atlas-SNP
LAMP5	24141	hgsc.bcm.edu	hg19	20	9496958	9496958	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	.	NM_012261	exon4	c.A425C	p.Q142P	AAGTGCAGTTTGT	.	111.0	42.0	103.0	0.0	.	.	.	.	Atlas-SNP
BRWD1	54014	hgsc.bcm.edu	hg19	21	40570714	40570714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	BRWD1	NM_018963	exon40	c.A5628G	p.I1876M	TTTTTCTATTTTG	.	96.0	16.0	129.0	0.0	.	325	.	.	Atlas-SNP
SF3A1	10291	hgsc.bcm.edu	hg19	22	30731656	30731656	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SF3A1	NM_005877	exon14	c.C2193G	p.L731L	GAGTGGGAGGGTG	.	101.0	33.0	99.0	0.0	.	61	.	.	Atlas-SNP
HMGXB4	10042	hgsc.bcm.edu	hg19	22	35689064	35689064	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	HMGXB4	NM_001003681	exon10	c.C1718G	p.T573S	GTCTCACCACACA	.	111.0	54.0	104.0	0.0	.	52	.	.	Atlas-SNP
SH3BP1	23616	hgsc.bcm.edu	hg19	22	38049838	38049838	+	Missense_Mutation	SNP	C	C	T	rs373477637	alternate_allele	TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SH3BP1	NM_018957	exon17	c.C1651T	p.P551S	AGGAGTCCCCCGG	.	294.0	126.0	296.0	0.0	.	41	.	.	Atlas-SNP
RP2	6102	hgsc.bcm.edu	hg19	X	46713108	46713108	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	RP2	NM_006915	exon2	c.G300T	p.V100V	CAGCGTGTTTTTC	.	40.0	5.0	75.0	0.0	.	37	.	.	Atlas-SNP
LAS1L	81887	hgsc.bcm.edu	hg19	X	64738079	64738079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	LAS1L	NM_031206	exon12	c.A1715C	p.K572T	ACCTCTTTCTCCT	.	38.0	33.0	57.0	0.0	.	72	.	.	Atlas-SNP
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128623009	128623009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SMARCA1	NM_003069	exon16	c.A2002G	p.M668V	GTATCATTTGTAA	.	47.0	40.0	57.0	0.0	.	126	.	.	Atlas-SNP
MTM1	4534	hgsc.bcm.edu	hg19	X	149814284	149814284	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	MTM1	NM_000252	exon9	c.A807T	p.K269N	TAATAAACAAATT	.	115.0	109.0	169.0	0.0	.	89	.	.	Atlas-SNP
DHX8	1659	hgsc.bcm.edu	hg19	17	41599464	41599471	+	Frame_Shift_Del	DEL	AAGGCCAT	AAGGCCAT	-	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	AAGGCCAT	AAGGCCAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	DHX8	NM_004941	exon22	c.3312_3319del	p.1104_1107del	.	.	104.0	28.0	147.0	0.0	.	98	.	.	Atlas-INDEL
FTCD	10841	hgsc.bcm.edu	hg19	21	47557204	47557205	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	FTCD	NM_206965	exon13	c.1488_1489insT	p.F496fs	.	.	42.0	32.0	44.0	0.0	.	59	.	.	Atlas-INDEL
SHE	126669	hgsc.bcm.edu	hg19	1	154474168	154474206	+	In_Frame_Del	DEL	ATCAGACCCTGCAGGCTGTCGCGGGACAGCCGGCTGTCC	ATCAGACCCTGCAGGCTGTCGCGGGACAGCCGGCTGTCC	-	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	ATCAGACCCTGCAGGCTGTCGCGGGACAGCCGGCTGTCC	ATCAGACCCTGCAGGCTGTCGCGGGACAGCCGGCTGTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SHE	NM_001010846	exon1	c.298_336del	p.100_112del	.	.	48.0	12.0	39.0	0.0	.	41	.	.	Atlas-INDEL
C19orf44	84167	hgsc.bcm.edu	hg19	19	16612008	16612009	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	C19orf44	NM_032207	exon2	c.405_406insT	p.L135fs	.	.	69.0	39.0	139.0	0.0	.	47	.	.	Atlas-INDEL
SCN2A	6326	hgsc.bcm.edu	hg19	2	166245957	166245957	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	SCN2A	NM_001040142	exon27	c.5640delA	p.E1880fs	.	.	169.0	97.0	242.0	0.0	.	589	.	.	Atlas-INDEL
KRT2	3849	hgsc.bcm.edu	hg19	12	53045638	53045639	+	In_Frame_Ins	INS	-	-	AAAGCCGCTGCCGCCTCC	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	KRT2	NM_000423	exon1	c.289_290insGGAGGCGGCAGCGGCTTT	p.G97delinsGGGSGFG	.	.	160.0	59.0	171.0	0.0	.	94	.	.	Atlas-INDEL
RNF145	153830	hgsc.bcm.edu	hg19	5	158603773	158603774	+	Frame_Shift_Ins	INS	-	-	CAAGG	novel		TCGA-DD-AADD-01A-11D-A40R-10	TCGA-DD-AADD-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41b8300c-eab5-44a5-ab8f-03914a67343e	80263fcb-f4b4-4a2d-ac6c-cf1a471a48be	.	RNF145	NM_001199380	exon5	c.578_579insCCTTG	p.V193fs	.	.	294.0	160.0	485.0	0.0	.	110	.	.	Atlas-INDEL