Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
EPHA10	284656	hgsc.bcm.edu	hg19	1	38197219	38197219	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	EPHA10	NM_001099439	exon7	c.A1527G	p.T509T	CGCCCCTGTCTTC	.	78.0	19.0	74.0	0.0	.	120	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70541979	70541979	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	LRRC7	NM_020794	exon22	c.C4336G	p.Q1446E	CCAGAGCAGGTGA	.	187.0	118.0	161.0	0.0	.	400	.	.	Atlas-SNP
FNBP1L	54874	hgsc.bcm.edu	hg19	1	94012443	94012443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	FNBP1L	NM_001164473	exon13	c.A1319T	p.Q440L	ATCCACAAATGGG	.	272.0	177.0	252.0	1.0	.	56	.	.	Atlas-SNP
HIPK1	204851	hgsc.bcm.edu	hg19	1	114498222	114498222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	HIPK1	NM_198268	exon5	c.C1358T	p.S453L	TAAAATCAAAAGA	.	464.0	176.0	351.0	1.0	.	195	.	.	Atlas-SNP
ENSA	2029	hgsc.bcm.edu	hg19	1	150598960	150598960	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ENSA	NM_207043	exon3	c.G226T	p.E76X	CCATTTCATCCGC	.	77.0	33.0	73.0	0.0	.	41	.	.	Atlas-SNP
SMCP	4184	hgsc.bcm.edu	hg19	1	152856963	152856963	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SMCP	NM_030663	exon2	c.A65T	p.Q22L	CACCACAGCAGAA	.	292.0	116.0	219.0	0.0	.	13	.	.	Atlas-SNP
MEF2D	4209	hgsc.bcm.edu	hg19	1	156452269	156452269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	MEF2D	NM_005920	exon3	c.A218G	p.N73S	GGCTCATTGTACT	.	106.0	59.0	81.0	0.0	.	43	.	.	Atlas-SNP
TTC24	164118	hgsc.bcm.edu	hg19	1	156555548	156555548	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	TTC24	NM_001105669	exon9	c.T1500A	p.A500A	TCTAGCTTCTAGT	.	103.0	52.0	75.0	0.0	.	46	.	.	Atlas-SNP
FCRL1	115350	hgsc.bcm.edu	hg19	1	157765954	157765954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	FCRL1	NM_052938	exon11	c.T1225A	p.L409I	TGTCTAAGGAAAC	.	122.0	56.0	71.0	0.0	.	164	.	.	Atlas-SNP
IGSF8	93185	hgsc.bcm.edu	hg19	1	160063091	160063091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	IGSF8	NM_052868	exon4	c.G935A	p.G312D	CGTTCACCAGGCC	.	150.0	33.0	120.0	0.0	.	59	.	.	Atlas-SNP
RASAL2	9462	hgsc.bcm.edu	hg19	1	178427017	178427017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	RASAL2	NM_170692	exon14	c.G2590T	p.A864S	GAGCATGCATCTG	.	130.0	9.0	120.0	0.0	.	334	.	.	Atlas-SNP
AXDND1	126859	hgsc.bcm.edu	hg19	1	179347779	179347779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	AXDND1	NM_144696	exon5	c.T382C	p.S128P	GATATTTCTTTTC	.	79.0	45.0	68.0	0.0	.	142	.	.	Atlas-SNP
XPR1	9213	hgsc.bcm.edu	hg19	1	180804015	180804015	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	XPR1	NM_004736	exon10	c.A1140T	p.R380R	GTTTCGAGTATTT	.	69.0	38.0	57.0	0.0	.	76	.	.	Atlas-SNP
CAPN9	10753	hgsc.bcm.edu	hg19	1	230883256	230883256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	CAPN9	NM_006615	exon1	c.A14T	p.Y5F	ACCTCTACCGGGC	.	244.0	125.0	157.0	0.0	.	116	.	.	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	hg19	1	233297033	233297033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	PCNXL2	NM_014801	exon18	c.T3350A	p.V1117E	AGGAATACAGTGC	.	278.0	99.0	218.0	0.0	.	204	.	.	Atlas-SNP
GNG4	2786	hgsc.bcm.edu	hg19	1	235747052	235747052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	GNG4	NM_004485	exon2	c.G87A	p.M29I	CCTGTCCATACAG	.	80.0	35.0	71.0	0.0	.	18	.	.	Atlas-SNP
RTN4	57142	hgsc.bcm.edu	hg19	2	55253108	55253108	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	RTN4	NM_020532	exon3	c.T2127A	p.A709A	TGGTTCAGCAGAA	.	34.0	20.0	27.0	0.0	.	189	.	.	Atlas-SNP
ERCC3	2071	hgsc.bcm.edu	hg19	2	128044277	128044277	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ERCC3	NM_000122	exon9	c.1342+2T>C	.	CTGCTTACCTGGT	.	54.0	26.0	30.0	0.0	.	73	.	.	Atlas-SNP
AGPS	8540	hgsc.bcm.edu	hg19	2	178370292	178370292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	AGPS	NM_003659	exon15	c.G1534A	p.A512T	GTTATTGCATACA	.	64.0	23.0	43.0	0.0	.	56	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179407205	179407205	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	TTN	NM_001267550	exon349	c.G97278A	p.L32426L	ACCGTCCAATTCA	.	124.0	52.0	79.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179465992	179465992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	TTN	NM_001267550	exon287	c.T55732A	p.Y18578N	GCTTACATATCGG	.	206.0	106.0	133.0	0.0	.	18412	.	.	Atlas-SNP
DPPA4	55211	hgsc.bcm.edu	hg19	3	109050838	109050838	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	DPPA4	NM_018189	exon3	c.C219T	p.P73P	AGGTCTGGGGTTG	.	76.0	28.0	85.0	0.0	.	56	.	.	Atlas-SNP
ITGB5	3693	hgsc.bcm.edu	hg19	3	124540273	124540273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ITGB5	NM_002213	exon6	c.A829G	p.T277A	CATCTGTTGTGAA	.	71.0	42.0	75.0	0.0	.	66	.	.	Atlas-SNP
ATP8A1	10396	hgsc.bcm.edu	hg19	4	42576682	42576682	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ATP8A1	NM_001105529	exon14	c.A1249T	p.N417Y	TTACATTGCATGT	.	161.0	102.0	212.0	0.0	.	206	.	.	Atlas-SNP
FGF5	2250	hgsc.bcm.edu	hg19	4	81188186	81188186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	FGF5	NM_004464	exon1	c.C208A	p.Q70K	GGCAGCCAAGGAA	.	145.0	12.0	180.0	0.0	.	49	.	.	Atlas-SNP
THAP9	79725	hgsc.bcm.edu	hg19	4	83829016	83829016	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	THAP9	NM_024672	exon4	c.A659C	p.Y220S	CACTCTACTTGTG	.	242.0	131.0	329.0	0.0	.	65	.	.	Atlas-SNP
MRPS18C	51023	hgsc.bcm.edu	hg19	4	84382321	84382321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	MRPS18C	NM_016067	exon6	c.A400G	p.K134E	GACCCTAAAGTTT	.	85.0	27.0	85.0	0.0	.	11	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123184690	123184690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	KIAA1109	NM_015312	exon42	c.G7076A	p.G2359D	CTGTGGGTAATCG	.	113.0	36.0	135.0	0.0	.	424	.	.	Atlas-SNP
UCP1	7350	hgsc.bcm.edu	hg19	4	141481162	141481162	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	UCP1	NM_021833	exon6	c.T812A	p.L271X	GGTACCAACCTAG	.	47.0	15.0	63.0	0.0	.	33	.	.	Atlas-SNP
AGA	175	hgsc.bcm.edu	hg19	4	178358643	178358643	+	Missense_Mutation	SNP	C	C	T	rs373865451		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	AGA	NM_000027	exon5	c.G538A	p.G180R	AGGGTCCGCAGTA	.	122.0	33.0	153.0	0.0	.	39	.	.	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	hg19	5	38978734	38978734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	RICTOR	NM_152756	exon9	c.A772T	p.T258S	AATCAGTATAGGG	.	46.0	19.0	27.0	0.0	.	182	.	.	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	hg19	5	109181594	109181594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	MAN2A1	NM_002372	exon18	c.T2729G	p.L910W	GCAAATTGCCTCT	.	66.0	18.0	69.0	0.0	.	136	.	.	Atlas-SNP
WDR36	134430	hgsc.bcm.edu	hg19	5	110462533	110462533	+	Missense_Mutation	SNP	C	C	A	rs79307023	bycluster	TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	WDR36,bladder,carcinoma,0,1	WDR36	NM_139281	exon23	c.C2808A	p.F936L	ACTCTTCAATCAA	.	398.0	107.0	457.0	0.0	.	111	.	C|1.000;T|0.000	Atlas-SNP
TMEM173	340061	hgsc.bcm.edu	hg19	5	138857039	138857039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	TMEM173	NM_198282	exon7	c.A821G	p.Y274C	TGACTGTATTGTG	.	71.0	18.0	90.0	0.0	.	19	.	.	Atlas-SNP
ARHGAP26	23092	hgsc.bcm.edu	hg19	5	142253059	142253059	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ARHGAP26	NM_015071	exon2	c.A249T	p.I83I	GTGTATAGGTAAG	.	45.0	17.0	54.0	0.0	.	57	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169505977	169505977	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	DOCK2	NM_004946	exon49	c.4995-2A>G	.	CCTTTCAGCTTTG	.	60.0	11.0	73.0	0.0	.	389	.	.	Atlas-SNP
RANBP17	64901	hgsc.bcm.edu	hg19	5	170720952	170720952	+	Silent	SNP	G	G	A	rs374592064	alternate_allele	TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	RANBP17	NM_022897	exon26	c.G3009A	p.R1003R	ATCCAGGCCTCTC	.	65.0	17.0	90.0	0.0	.	108	.	.	Atlas-SNP
ZKSCAN8	7745	hgsc.bcm.edu	hg19	6	28117277	28117277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	.	NM_006298	exon3	c.A434G	p.H145R	GCGTACATGGACA	.	114.0	50.0	108.0	0.0	.	.	.	.	Atlas-SNP
IP6K3	117283	hgsc.bcm.edu	hg19	6	33690512	33690512	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	IP6K3	NM_001142883	exon7	c.C1218T	p.I406I	CTCTTGGATATCC	.	130.0	26.0	115.0	0.0	.	52	.	.	Atlas-SNP
EEF1A1	1915	hgsc.bcm.edu	hg19	6	74228551	74228551	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	EEF1A1	NM_001402	exon5	c.G642C	p.W214C	GACTTTCCATCCC	.	80.0	25.0	86.0	0.0	.	56	.	.	Atlas-SNP
HBS1L	10767	hgsc.bcm.edu	hg19	6	135358397	135358397	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	HBS1L	NM_001145207	exon5	c.C1198G	p.Q400E	ATGACTGGTTACA	.	79.0	23.0	89.0	0.0	.	75	.	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161470546	161470546	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	MAP3K4	NM_006724	exon3	c.G1242A	p.L414L	TGTTTTGGGCATC	.	90.0	24.0	93.0	0.0	.	364	.	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161523752	161523752	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	MAP3K4	NM_005922	exon19	c.A3797T	p.D1266V	GAGGAGATTCAAG	.	408.0	246.0	472.0	0.0	.	364	.	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	hg19	7	77973184	77973184	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	MAGI2	NM_012301	exon9	c.T1319G	p.I440S	CCAATGATGGTAA	.	229.0	48.0	185.0	0.0	.	246	.	.	Atlas-SNP
NYAP1	222950	hgsc.bcm.edu	hg19	7	100088252	100088252	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	.	NM_173564	exon5	c.A2058G	p.A686A	GGGGGCAGAGGGA	.	223.0	100.0	203.0	0.0	.	.	.	.	Atlas-SNP
C7orf66	154907	hgsc.bcm.edu	hg19	7	108524539	108524539	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	C7orf66	NM_001024607	exon1	c.T51G	p.P17P	GAGATGAGGTACA	.	133.0	49.0	123.0	0.0	.	29	.	.	Atlas-SNP
ADAM2	2515	hgsc.bcm.edu	hg19	8	39645736	39645736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ADAM2	NM_001464	exon9	c.C677T	p.S226F	AATGAAGACAGAA	.	33.0	19.0	54.0	0.0	.	124	.	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	hg19	8	116616870	116616870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	TRPS1	NM_014112	exon4	c.G1326T	p.E442D	GGTGGCCTCTGTA	.	65.0	21.0	85.0	0.0	.	516	.	.	Atlas-SNP
CER1	9350	hgsc.bcm.edu	hg19	9	14722569	14722569	+	Silent	SNP	G	G	C	rs376786967	alternate_allele	TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	CER1	NM_005454	exon1	c.C102G	p.L34L	TGGCAGGAGTACG	.	45.0	18.0	48.0	0.0	.	41	.	.	Atlas-SNP
VCP	7415	hgsc.bcm.edu	hg19	9	35063004	35063004	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	VCP	NM_007126	exon7	c.A782T	p.E261V	CCAGTCTCATTTG	.	127.0	54.0	107.0	0.0	.	64	.	.	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	hg19	9	119116067	119116067	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	PAPPA	NM_002581	exon17	c.T4342A	p.S1448T	GATGCCTCCCAGG	.	77.0	18.0	82.0	0.0	.	243	.	.	Atlas-SNP
EXD3	54932	hgsc.bcm.edu	hg19	9	140247240	140247240	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	EXD3	NM_017820	exon12	c.871-2A>T	.	AGGCCCTGTGAGG	.	86.0	22.0	147.0	0.0	.	86	.	.	Atlas-SNP
CAMK2G	818	hgsc.bcm.edu	hg19	10	75620639	75620639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	CAMK2G	NM_172170	exon3	c.A169G	p.K57E	CTAGTTTCTGGTG	.	82.0	67.0	150.0	0.0	.	79	.	.	Atlas-SNP
OR8J1	219477	hgsc.bcm.edu	hg19	11	56128125	56128125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	OR8J1	NM_001005205	exon1	c.G403T	p.V135L	ATGGTGGTGGTGT	.	78.0	46.0	121.0	0.0	.	87	.	.	Atlas-SNP
YIF1A	10897	hgsc.bcm.edu	hg19	11	66053219	66053219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	YIF1A	NM_020470	exon5	c.C438A	p.F146L	AGTAATGAAGGCC	.	52.0	16.0	62.0	0.0	.	29	.	.	Atlas-SNP
A2M	2	hgsc.bcm.edu	hg19	12	9230420	9230420	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	A2M,NS,carcinoma,0,1	A2M	NM_000014	exon26	c.A3153C	p.Q1051H	TCGAGCTTGGGCA	.	94.0	28.0	119.0	0.0	.	180	.	.	Atlas-SNP
OR10A7	121364	hgsc.bcm.edu	hg19	12	55615504	55615504	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	OR10A7	NM_001005280	exon1	c.T696A	p.T232T	TGCCACTGGCCGC	.	71.0	24.0	75.0	0.0	.	53	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80935405	80935405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	PTPRQ	NM_001145026	exon18	c.C2710T	p.P904S	TGGGTCCCACCGG	.	65.0	9.0	53.0	0.0	.	119	.	.	Atlas-SNP
RASSF9	9182	hgsc.bcm.edu	hg19	12	86199277	86199277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	RASSF9	NM_005447	exon2	c.A511G	p.I171V	GCTTAATTTTAGC	.	71.0	22.0	71.0	0.0	.	100	.	.	Atlas-SNP
SELPLG	6404	hgsc.bcm.edu	hg19	12	109017058	109017058	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SELPLG	NM_001206609	exon2	c.G1074A	p.A358A	GCGGACCGCCAGC	.	160.0	69.0	170.0	0.0	.	138	.	.	Atlas-SNP
PDS5B	23047	hgsc.bcm.edu	hg19	13	33338652	33338652	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	PDS5B	NM_015032	exon31	c.A3544T	p.S1182C	GATCACAGTGAAA	.	214.0	115.0	253.0	1.0	.	141	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77671529	77671529	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	MYCBP2	NM_015057	exon56	c.T9760G	p.Y3254D	TGTGATAGGTCAC	.	67.0	20.0	67.0	0.0	.	1029	.	.	Atlas-SNP
SCEL	8796	hgsc.bcm.edu	hg19	13	78133957	78133957	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SCEL	NM_003843	exon4	c.G180A	p.R60R	CGGTAGGGTGGTG	.	86.0	49.0	124.0	0.0	.	85	.	.	Atlas-SNP
VIPAS39	63894	hgsc.bcm.edu	hg19	14	77895375	77895375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	.	NM_001193314	exon18	c.T1330G	p.F444V	ACTTGAACTTAGT	.	58.0	29.0	53.0	0.0	.	.	.	.	Atlas-SNP
CLMN	79789	hgsc.bcm.edu	hg19	14	95677210	95677210	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	CLMN	NM_024734	exon7	c.C615G	p.G205G	CGCCACGCCATAC	.	84.0	23.0	61.0	0.0	.	103	.	.	Atlas-SNP
BAHD1	22893	hgsc.bcm.edu	hg19	15	40757560	40757560	+	Silent	SNP	G	G	A	rs151097414		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	BAHD1	NM_014952	exon6	c.G2079A	p.S693S	TGCATCGCGACAT	.	77.0	17.0	64.0	0.0	.	68	.	G|1.000;A|0.000	Atlas-SNP
SPATA5L1	79029	hgsc.bcm.edu	hg19	15	45695491	45695491	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SPATA5L1	NM_024063	exon1	c.C864T	p.R288R	CCAGCGCGCCCGG	.	122.0	61.0	118.0	0.0	.	40	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62155676	62155676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	VPS13C	NM_020821	exon82	c.C10915T	p.P3639S	TTCCAGGAATAGC	.	105.0	6.0	120.0	0.0	.	506	.	.	Atlas-SNP
LARP6	55323	hgsc.bcm.edu	hg19	15	71124687	71124687	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	LARP6	NM_018357	exon3	c.A1180T	p.R394X	ACTTTCTGGAAAC	.	87.0	51.0	84.0	0.0	.	43	.	.	Atlas-SNP
KIAA1199	57214	hgsc.bcm.edu	hg19	15	81225586	81225586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	KIAA1199	NM_018689	exon22	c.A2794G	p.I932V	GTTTAGATTACTT	.	135.0	73.0	82.0	0.0	.	118	.	.	Atlas-SNP
CASKIN1	57524	hgsc.bcm.edu	hg19	16	2231253	2231253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	CASKIN1	NM_020764	exon18	c.T2116C	p.S706P	CCTGCGAGCTGCT	.	64.0	10.0	65.0	0.0	.	130	.	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	hg19	16	2339511	2339511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ABCA3	NM_001089	exon20	c.G2624T	p.C875F	GCCCCACAGAGGT	.	56.0	28.0	62.0	0.0	.	176	.	.	Atlas-SNP
ABCC11	85320	hgsc.bcm.edu	hg19	16	48239436	48239436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ABCC11	NM_033151	exon12	c.G1693C	p.E565Q	AGCCCTCGAGCAA	.	76.0	31.0	58.0	0.0	.	177	.	.	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	hg19	16	49559304	49559304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	ZNF423_ENST00000262383,NS,carcinoma,0,2	ZNF423	NM_015069	exon6	c.G3679A	p.G1227S	AGGTGCCGCCCAT	.	104.0	27.0	144.0	0.0	.	463	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53488597	53488597	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	RBL2	NM_005611	exon8	c.A1022T	p.Y341F	AGGAGTATGTTTT	.	117.0	52.0	119.0	0.0	.	115	.	.	Atlas-SNP
PLCG2	5336	hgsc.bcm.edu	hg19	16	81891876	81891876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	PLCG2	NM_002661	exon4	c.A346G	p.K116E	GACTCTAAAGAGG	.	118.0	58.0	93.0	0.0	.	276	.	.	Atlas-SNP
NLGN2	57555	hgsc.bcm.edu	hg19	17	7318992	7318992	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	NLGN2	NM_020795	exon6	c.T1200G	p.G400G	GGACGGTGTGTCT	.	79.0	65.0	101.0	0.0	.	61	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577610	7577610	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	TP53_ENST00000545858,NS,carcinoma,0,63	TP53	NM_000546	exon8	c.673-2A>T	.	CCAACCTAGGAGA	.	48.0	44.0	57.0	0.0	.	33396	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11757663	11757663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	DNAH9	NM_001372	exon50	c.C9851A	p.P3284H	TGGAACCCAAGCG	.	93.0	77.0	199.0	0.0	.	695	.	.	Atlas-SNP
SLC46A1	113235	hgsc.bcm.edu	hg19	17	26732441	26732441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SLC46A1	NM_001242366	exon2	c.G274A	p.G92S	AGCCGCCCACGTT	.	124.0	60.0	115.0	0.0	.	17	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29560090	29560090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	NF1	NM_000267	exon27	c.A3567T	p.Q1189H	TCAACAAGGCACA	.	148.0	68.0	134.0	0.0	.	1586	.	.	Atlas-SNP
UNC45B	146862	hgsc.bcm.edu	hg19	17	33504057	33504057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	UNC45B	NM_173167	exon16	c.G2053A	p.E685K	GCTTTGGAGGGCA	.	76.0	20.0	75.0	0.0	.	133	.	.	Atlas-SNP
SLFN13	146857	hgsc.bcm.edu	hg19	17	33768135	33768135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SLFN13	NM_144682	exon6	c.G2173A	p.E725K	GCTCTTCTCTTGG	.	77.0	34.0	58.0	0.0	.	79	.	.	Atlas-SNP
CNTNAP1	8506	hgsc.bcm.edu	hg19	17	40835882	40835882	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	CNTNAP1	NM_003632	exon2	c.C111A	p.S37S	ACGCTCCCTGGGC	.	62.0	28.0	51.0	0.0	.	116	.	.	Atlas-SNP
ACBD4	79777	hgsc.bcm.edu	hg19	17	43214134	43214134	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ACBD4	NM_001135707	exon4	c.G285A	p.V95V	ACTGGTGGCACAG	.	56.0	23.0	66.0	0.0	.	51	.	.	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	hg19	17	56383220	56383220	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	BZRAP1	NM_004758	exon27	c.C5231A	p.S1744X	CCTTCCGACTCAG	.	54.0	15.0	45.0	0.0	.	287	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65870972	65870972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	BPTF	NM_004459	exon4	c.T1700C	p.I567T	GAGACATTGATAA	.	487.0	235.0	374.0	1.0	.	415	.	.	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	hg19	18	56033235	56033235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	NEDD4L	NM_001144967	exon21	c.A1838T	p.D613V	AGGCTGATATCCC	.	70.0	34.0	72.0	0.0	.	126	.	.	Atlas-SNP
POLRMT	5442	hgsc.bcm.edu	hg19	19	621737	621737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	POLRMT	NM_005035	exon10	c.C1961T	p.P654L	GTCCAGGGCAGCG	.	53.0	20.0	37.0	0.0	.	91	.	.	Atlas-SNP
INSR	3643	hgsc.bcm.edu	hg19	19	7152760	7152760	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	INSR	NM_000208	exon10	c.G2208A	p.L736L	GTTGTGCAGGTAA	.	53.0	21.0	61.0	0.0	.	265	.	.	Atlas-SNP
FCER2	2208	hgsc.bcm.edu	hg19	19	7762139	7762139	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	FCER2	NM_002002	exon6	c.A299T	p.Q100L	AATCTCTGCTGTT	.	66.0	16.0	103.0	0.0	.	19	.	.	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	hg19	19	36003550	36003550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	DMKN	NM_001190347	exon2	c.G569T	p.G190V	GGAGCTCCCTGAG	.	101.0	37.0	81.0	0.0	.	116	.	.	Atlas-SNP
SLC8A2	6543	hgsc.bcm.edu	hg19	19	47944676	47944676	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SLC8A2	NM_015063	exon5	c.A1785T	p.I595I	ATCAACTATCTTC	.	62.0	29.0	41.0	0.0	.	77	.	.	Atlas-SNP
TMEM143	55260	hgsc.bcm.edu	hg19	19	48848536	48848536	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	TMEM143	NM_018273	exon4	c.A445T	p.N149Y	GCTCATTAGACAG	.	188.0	88.0	159.0	0.0	.	29	.	.	Atlas-SNP
LRRC4B	94030	hgsc.bcm.edu	hg19	19	51022527	51022527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	LRRC4B	NM_001080457	exon3	c.C443T	p.T148M	GGCACCGTGGTCA	.	109.0	19.0	80.0	0.0	.	89	.	.	Atlas-SNP
SIRPG	55423	hgsc.bcm.edu	hg19	20	1616155	1616155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SIRPG	NM_018556	exon4	c.G839T	p.S280I	TGTAGGCTCTGGG	.	232.0	116.0	187.0	0.0	.	61	.	.	Atlas-SNP
CHGB	1114	hgsc.bcm.edu	hg19	20	5903869	5903869	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	CHGB	NM_001819	exon4	c.A1079T	p.E360V	AGTGGGAGCGCTA	.	78.0	33.0	61.0	0.0	.	112	.	.	Atlas-SNP
EPB41L1	2036	hgsc.bcm.edu	hg19	20	34810266	34810266	+	Missense_Mutation	SNP	G	G	A	rs371978327		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	EPB41L1,rectum,carcinoma,0,1	EPB41L1	NM_012156	exon21	c.G2587A	p.V863I	GCTGTCGTATACA	.	61.0	30.0	67.0	0.0	.	111	.	.	Atlas-SNP
ZBTB46	140685	hgsc.bcm.edu	hg19	20	62378586	62378586	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ZBTB46	NM_025224	exon5	c.G1467T	p.V489V	GATGCCCACGCTG	.	90.0	17.0	103.0	0.0	.	72	.	.	Atlas-SNP
ATP6V1E1	529	hgsc.bcm.edu	hg19	22	18095625	18095625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	ATP6V1E1	NM_001039367	exon4	c.A229G	p.N77D	CTTGATTCATCAA	.	378.0	77.0	356.0	0.0	.	28	.	.	Atlas-SNP
SLC25A1	6576	hgsc.bcm.edu	hg19	22	19166135	19166135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SLC25A1	NM_005984	exon1	c.G52A	p.G18R	CCTTCCCGGACGC	.	10.0	7.0	7.0	0.0	.	14	.	.	Atlas-SNP
EFHC2	80258	hgsc.bcm.edu	hg19	X	44101519	44101519	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	EFHC2	NM_025184	exon8	c.T1128G	p.V376V	GCATGAAACTGAG	.	75.0	63.0	128.0	0.0	.	81	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15092	15092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	.	ENST00000361789	exon1	c.G346A	p.G116S	AACATCGGCATTA	.	12.0	8.0	38.0	0.0	.	.	.	.	Atlas-SNP
FKBP9	11328	hgsc.bcm.edu	hg19	7	33044951	33044977	+	Frame_Shift_Del	DEL	CGATGAACTCTAAACCTGGCATGAACC	CGATGAACTCTAAACCTGGCATGAACC	-	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	CGATGAACTCTAAACCTGGCATGAACC	CGATGAACTCTAAACCTGGCATGAACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	FKBP9	NM_007270	exon10	c.1700_1894del	p.567_571del	.	.	267.0	71.0	360.0	0.0	.	335	.	.	Atlas-INDEL
C6	729	hgsc.bcm.edu	hg19	5	41181567	41181567	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	C6	NM_001115131	exon7	c.822delG	p.Q274fs	.	.	173.0	90.0	114.0	0.0	.	197	.	.	Atlas-INDEL
CDKN2A	1029	hgsc.bcm.edu	hg19	9	21974776	21974777	+	Frame_Shift_Ins	INS	-	-	GCCA	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	CDKN2A	NM_058197	exon1	c.51_52insTGGC	p.A17fs	.	.	57.0	28.0	59.0	0.0	.	4810	.	.	Atlas-INDEL
NGFR	4804	hgsc.bcm.edu	hg19	17	47590366	47590367	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	NGFR	NM_002507	exon6	c.1278_1279del	p.426_427del	.	.	61.0	22.0	49.0	0.0	.	46	.	.	Atlas-INDEL
TP53BP1	7158	hgsc.bcm.edu	hg19	15	43712632	43712634	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	TP53BP1	NM_001141980	exon21	c.4551_4553del	p.1517_1518del	.	.	105.0	50.0	105.0	0.0	.	157	.	.	Atlas-INDEL
SLC5A11	115584	hgsc.bcm.edu	hg19	16	24922649	24922650	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-DD-AAD8-01A-11D-A40R-10	TCGA-DD-AAD8-10A-01D-A40U-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e9bd10d3-14cc-458b-ad39-9001c8870b4e	8f73a6a2-ac9e-4907-8a3a-8b8d79b2d7d2	.	SLC5A11	NM_052944	exon16	c.1823_1823del	p.608_608del	.	.	88.0	43.0	92.0	0.0	.	97	.	.	Atlas-INDEL