Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TTLL10 254173 hgsc.bcm.edu hg19 1 1119315 1119315 + Silent SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TTLL10 NM_001130045 exon12 c.G1104A p.P368P GAACCCGCTGCTG . 60.0 20.0 82.0 0.0 . 66 . . Atlas-SNP ARID1A 8289 hgsc.bcm.edu hg19 1 27089690 27089690 + Silent SNP G G C rs149901342 TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ARID1A NM_006015 exon8 c.G2646C p.G882G GTCAGGGATGTGT . 146.0 52.0 201.0 0.0 . 842 . G|1.000;C|0.000 Atlas-SNP RCC1 1104 hgsc.bcm.edu hg19 1 28863259 28863259 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . RCC1 NM_001048194 exon10 c.G1031A p.G344E CCATAGGAAAAGC . 51.0 19.0 49.0 0.0 . 61 . . Atlas-SNP EPHA10 284656 hgsc.bcm.edu hg19 1 38227675 38227675 + Silent SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . EPHA10 NM_001099439 exon3 c.G252A p.Q84Q GTTGTCCTGGTTG . 72.0 32.0 89.0 0.0 . 120 . . Atlas-SNP C8A 731 hgsc.bcm.edu hg19 1 57320606 57320606 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . C8A NM_000562 exon1 c.T32A p.L11X TGTCTTTGATGAC . 115.0 36.0 145.0 0.0 . 103 . . Atlas-SNP JAK1 3716 hgsc.bcm.edu hg19 1 65310503 65310503 + Missense_Mutation SNP T T A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 JAK1,NS,carcinoma,0,2 JAK1 NM_002227 exon16 c.A2185T p.S729C ACTCACTGTCGAT . 135.0 59.0 158.0 0.0 . 209 . . Atlas-SNP CLCA1 1179 hgsc.bcm.edu hg19 1 86948018 86948018 + Missense_Mutation SNP C C A rs149585400 alternate_allele TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CLCA1 NM_001285 exon5 c.C688A p.R230S CAATCCCGCCAGA . 119.0 45.0 165.0 0.0 . 109 . C|1.000;T|0.000 Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94522310 94522310 + Silent SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ABCA4 NM_000350 exon15 c.C2229T p.A743A GATGGTGGCAGTG . 135.0 30.0 208.0 0.0 . 275 . . Atlas-SNP STXBP3 6814 hgsc.bcm.edu hg19 1 109351498 109351498 + Missense_Mutation SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . STXBP3 NM_007269 exon19 c.A1778G p.X593W ATGAATAGCATTT . 88.0 37.0 103.0 0.0 . 44 . . Atlas-SNP KCNA10 3744 hgsc.bcm.edu hg19 1 111059915 111059915 + Missense_Mutation SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . KCNA10 NM_005549 exon1 c.A1495G p.K499E TGGTCTTATTAAG . 74.0 15.0 112.0 0.0 . 92 . . Atlas-SNP GJA8 2703 hgsc.bcm.edu hg19 1 147380358 147380358 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . GJA8 NM_005267 exon2 c.C276A p.Y92X GATGTACGTGGGG . 79.0 56.0 70.0 0.0 . 108 . . Atlas-SNP RIIAD1 284485 hgsc.bcm.edu hg19 1 151701300 151701300 + Silent SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . RIIAD1 NM_001144956 exon4 c.G267A p.K89K AGACAAGAAAGCG . 73.0 47.0 55.0 0.0 . 6 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152080637 152080637 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TCHH NM_007113 exon3 c.C5056T p.R1686C CTTGGCGGCGCAG . 144.0 105.0 118.0 0.0 . 275 . . Atlas-SNP CEP350 9857 hgsc.bcm.edu hg19 1 179993651 179993651 + Missense_Mutation SNP T T A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CEP350 NM_014810 exon14 c.T3484A p.S1162T GCCCAGTCTGCTG . 105.0 13.0 85.0 0.0 . 418 . . Atlas-SNP PIGR 5284 hgsc.bcm.edu hg19 1 207106368 207106368 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PIGR NM_002644 exon7 c.C1849T p.Q617X CGGCTTGATCTCT . 76.0 6.0 56.0 0.0 . 98 . . Atlas-SNP C1orf65 164127 hgsc.bcm.edu hg19 1 223568318 223568318 + Missense_Mutation SNP A A T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . C1orf65 NM_152610 exon1 c.A1501T p.M501L AGGAAGATGCGCA . 184.0 18.0 122.0 0.0 . 71 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228467638 228467638 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . OBSCN NM_001271223 exon33 c.G8800A p.D2934N AAGGATGACACGC . 150.0 10.0 148.0 0.0 . 2142 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237608813 237608813 + Missense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . RYR2 NM_001035 exon14 c.G1283T p.R428I TCAATAGATTTAT . 167.0 8.0 133.0 0.0 . 1273 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21236085 21236085 + Missense_Mutation SNP C C G rs13306187 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 APOB,NS,malignant_melanoma,-1,1 APOB NM_000384 exon25 c.G4163C p.R1388P TGGTAACGAGCCC . 121.0 44.0 128.0 0.0 . 761 . C|0.997;T|0.003 Atlas-SNP GPR113 165082 hgsc.bcm.edu hg19 2 26536264 26536264 + Missense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . GPR113 NM_001145168 exon9 c.C1454A p.A485D AACAAGGCCAGGA . 98.0 37.0 142.0 0.0 . 134 . . Atlas-SNP NRXN1 9378 hgsc.bcm.edu hg19 2 51255333 51255333 + Silent SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . NRXN1 NM_004801 exon2 c.C79T p.L27L TGCCCAGCTCCGC . 54.0 21.0 40.0 0.0 . 1118 . . Atlas-SNP EHBP1 23301 hgsc.bcm.edu hg19 2 63206420 63206420 + Missense_Mutation SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . EHBP1 NM_015252 exon16 c.A2663G p.Y888C CCAGCTATGGTGA . 114.0 42.0 130.0 0.0 . 127 . . Atlas-SNP SNRNP27 11017 hgsc.bcm.edu hg19 2 70123665 70123665 + Missense_Mutation SNP G G C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SNRNP27 NM_006857 exon3 c.G253C p.E85Q AGCAAAGAACGGC . 64.0 14.0 77.0 0.0 . 18 . . Atlas-SNP ZNF638 27332 hgsc.bcm.edu hg19 2 71591128 71591128 + Missense_Mutation SNP C C G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZNF638 NM_014497 exon5 c.C1463G p.S488C GACGTTCTCATTC . 132.0 51.0 141.0 0.0 . 179 . . Atlas-SNP C2orf15 150590 hgsc.bcm.edu hg19 2 99767195 99767195 + Silent SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . C2orf15 NM_144706 exon4 c.A276G p.T92T CTTTACAAGGATT . 418.0 120.0 477.0 0.0 . 11 . . Atlas-SNP EIF5B 9669 hgsc.bcm.edu hg19 2 99976706 99976706 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . EIF5B NM_015904 exon2 c.G43A p.D15N ACCAAGGATGACA . 462.0 146.0 506.0 0.0 . 95 . . Atlas-SNP SEPT10 151011 hgsc.bcm.edu hg19 2 110332246 110332246 + Missense_Mutation SNP C C A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 SEPT10_ENST00000397712,NS,carcinoma,0,4 SEPT10 NM_144710 exon5 c.G512T p.R171L TGGATGCGAGAAT . 95.0 31.0 109.0 1.0 . 58 . . Atlas-SNP FZD5 7855 hgsc.bcm.edu hg19 2 208633107 208633107 + Silent SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . FZD5 NM_003468 exon2 c.G357A p.L119L GCGCATCAGCGGC . 24.0 12.0 27.0 0.0 . 22 . . Atlas-SNP AGFG1 3267 hgsc.bcm.edu hg19 2 228401645 228401645 + Silent SNP T T A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . AGFG1 NM_001135187 exon11 c.T1386A p.A462A TGTTGCTGCTGCT . 92.0 23.0 205.0 0.0 . 80 . . Atlas-SNP AGFG1 3267 hgsc.bcm.edu hg19 2 228401648 228401648 + Silent SNP T T A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . AGFG1 NM_001135187 exon11 c.T1389A p.A463A TGCTGCTGCTGGT . 94.0 24.0 208.0 0.0 . 80 . . Atlas-SNP OXSM 54995 hgsc.bcm.edu hg19 3 25835810 25835810 + Missense_Mutation SNP G G C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . OXSM NM_017897 exon3 c.G1205C p.C402S TAGCTTGTTATTA . 172.0 62.0 176.0 0.0 . 54 . . Atlas-SNP PLCD1 5333 hgsc.bcm.edu hg19 3 38049272 38049272 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PLCD1 NM_001130964 exon15 c.C2326T p.Q776X AGTCCTGGAGGGA . 88.0 36.0 95.0 0.0 . 87 . . Atlas-SNP WDR5B 54554 hgsc.bcm.edu hg19 3 122133743 122133743 + Silent SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . WDR5B NM_019069 exon1 c.T633C p.P211P GACAGGAGGGTTA . 96.0 35.0 97.0 0.0 . 36 . . Atlas-SNP SNX4 8723 hgsc.bcm.edu hg19 3 125195601 125195601 + Splice_Site SNP C C A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SNX4 NM_003794 exon9 c.727-1G>T . TACTCTCTGAAAT . 445.0 136.0 483.0 0.0 . 29 . . Atlas-SNP PLXNA1 5361 hgsc.bcm.edu hg19 3 126736619 126736619 + Missense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PLXNA1 NM_032242 exon18 c.G3544T p.G1182C GCACCCGGCAACT . 93.0 37.0 94.0 0.0 . 185 . . Atlas-SNP CEP63 80254 hgsc.bcm.edu hg19 3 134278032 134278032 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 CEP63,bladder,carcinoma,0,1 CEP63 NM_025180 exon15 c.G1714A p.E572K AAGACTGAGCACT . 159.0 39.0 135.0 0.0 . 56 . . Atlas-SNP ESYT3 83850 hgsc.bcm.edu hg19 3 138153695 138153695 + Missense_Mutation SNP C C G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ESYT3 NM_031913 exon1 c.C55G p.R19G GCCCAGCGCACGC . 43.0 15.0 45.0 0.0 . 64 . . Atlas-SNP TRIM42 287015 hgsc.bcm.edu hg19 3 140409822 140409822 + Missense_Mutation SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TRIM42 NM_152616 exon4 c.T1873C p.C625R TGGACATGTCCAG . 109.0 30.0 112.0 0.0 . 143 . . Atlas-SNP IGSF10 285313 hgsc.bcm.edu hg19 3 151160830 151160830 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . IGSF10 NM_178822 exon5 c.C5905T p.P1969S GTTTGGGCTCCCC . 73.0 16.0 94.0 0.0 . 279 . . Atlas-SNP GFM1 85476 hgsc.bcm.edu hg19 3 158407956 158407956 + Missense_Mutation SNP G G C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . GFM1 NM_024996 exon16 c.G1914C p.L638F AGCCTTGGCAAAT . 63.0 18.0 91.0 0.0 . 83 . . Atlas-SNP HS3ST1 9957 hgsc.bcm.edu hg19 4 11401299 11401299 + Missense_Mutation SNP A A T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . HS3ST1 NM_005114 exon2 c.T331A p.W111R GTGGCCAGGAGAA . 48.0 25.0 110.0 0.0 . 41 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30723995 30723995 + Missense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PCDH7 NM_032457 exon1 c.G951T p.L317F CGACTTGGCTGAG . 123.0 52.0 197.0 0.0 . 215 . . Atlas-SNP NUDT6 11162 hgsc.bcm.edu hg19 4 123818824 123818824 + Missense_Mutation SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . NUDT6 NM_007083 exon4 c.A508G p.M170V TCCACATATTTTT . 542.0 215.0 652.0 1.0 . 50 . . Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187541512 187541512 + Silent SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . FAT1 NM_005245 exon10 c.T6228C p.D2076D CGCATTATCATTT . 90.0 45.0 131.0 0.0 . 500 . . Atlas-SNP HAPLN1 1404 hgsc.bcm.edu hg19 5 82940201 82940201 + Silent SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . HAPLN1 NM_001884 exon4 c.T756C p.C252C TGTAAAACAGAAA . 146.0 18.0 198.0 0.0 . 79 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90002212 90002212 + Splice_Site SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . GPR98 NM_032119 exon38 c.8730+1G>A . CTTGAGGTAAAAC . 226.0 43.0 239.0 0.0 . 605 . . Atlas-SNP EGR1 1958 hgsc.bcm.edu hg19 5 137801456 137801456 + Silent SNP C C G rs200905400 alternate_allele TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . EGR1 NM_001964 exon1 c.C6G p.A2A GATGGCCGCGGCC . 113.0 16.0 118.0 0.0 . 52 . . Atlas-SNP PCDHA13 56136 hgsc.bcm.edu hg19 5 140262072 140262072 + Missense_Mutation SNP C C A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PCDHA13 NM_031865 exon1 c.C219A p.D73E CGGGGACCTTCTG . 111.0 54.0 142.0 0.0 . 213 . . Atlas-SNP STK10 6793 hgsc.bcm.edu hg19 5 171533682 171533682 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . STK10 NM_005990 exon6 c.C730T p.R244W GGACCCGCATGGG . 109.0 20.0 106.0 0.0 . 100 . . Atlas-SNP RNF44 22838 hgsc.bcm.edu hg19 5 175959156 175959156 + Missense_Mutation SNP C C A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . RNF44 NM_014901 exon3 c.G146T p.R49L TCATCCCGGGCAG . 206.0 27.0 243.0 0.0 . 33 . . Atlas-SNP SQSTM1 8878 hgsc.bcm.edu hg19 5 179260608 179260608 + Missense_Mutation SNP T T A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SQSTM1 NM_003900 exon7 c.T991A p.C331S GATAACTGTTCAG . 104.0 12.0 131.0 0.0 . 30 . . Atlas-SNP FOXC1 2296 hgsc.bcm.edu hg19 6 1611582 1611582 + Missense_Mutation SNP C C G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . FOXC1 NM_001453 exon1 c.C902G p.P301R CCCCGCCGCCGCA . 62.0 34.0 89.0 0.0 . 19 . . Atlas-SNP SLC22A23 63027 hgsc.bcm.edu hg19 6 3273355 3273355 + Silent SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SLC22A23 NM_015482 exon10 c.C1995T p.H665H GGCATCGTGGAGG . 27.0 8.0 34.0 0.0 . 89 . . Atlas-SNP SLC22A23 63027 hgsc.bcm.edu hg19 6 3273357 3273357 + Missense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SLC22A23 NM_015482 exon10 c.C1993A p.H665N CATCGTGGAGGCC . 27.0 8.0 33.0 0.0 . 89 . . Atlas-SNP F13A1 2162 hgsc.bcm.edu hg19 6 6145859 6145859 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . F13A1 NM_000129 exon15 c.C2192T p.S731F CACATGGAAGGTC . 97.0 24.0 114.0 0.0 . 135 . . Atlas-SNP ZNF318 24149 hgsc.bcm.edu hg19 6 43307288 43307288 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZNF318 NM_014345 exon10 c.C4448T p.S1483F GTCTGAGATACAA . 92.0 31.0 97.0 0.0 . 175 . . Atlas-SNP POLR1C 9533 hgsc.bcm.edu hg19 6 43487179 43487179 + Splice_Site SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . POLR1C NM_203290 exon3 c.249+1G>T . GCTGAGGTATTGG . 117.0 39.0 144.0 0.0 . 52 . . Atlas-SNP ADCYAP1R1 117 hgsc.bcm.edu hg19 7 31139807 31139807 + Silent SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ADCYAP1R1 NM_001199635 exon14 c.A1113G p.E371E GTCAGAACTGTCC . 58.0 14.0 57.0 0.0 . 78 . . Atlas-SNP PTPN12 5782 hgsc.bcm.edu hg19 7 77256222 77256222 + Missense_Mutation SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PTPN12 NM_002835 exon13 c.A1226G p.Y409C GAAACTATAGTAA . 132.0 39.0 140.0 0.0 . 83 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 131849014 131849014 + Missense_Mutation SNP A A C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PLXNA4 NM_020911 exon24 c.T4387G p.C1463G TGGCACAGAACAG . 66.0 22.0 84.0 0.0 . 873 . . Atlas-SNP ADAM9 8754 hgsc.bcm.edu hg19 8 38947598 38947598 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ADAM9 NM_003816 exon19 c.G2101A p.V701I CTTCTGGTCTTCT . 67.0 35.0 143.0 0.0 . 66 . . Atlas-SNP VCPIP1 80124 hgsc.bcm.edu hg19 8 67578049 67578049 + Missense_Mutation SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . VCPIP1 NM_025054 exon1 c.A1145G p.Q382R AGGTCCTGAGGCA . 105.0 35.0 105.0 0.0 . 110 . . Atlas-SNP C8orf34 116328 hgsc.bcm.edu hg19 8 69552726 69552726 + Silent SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . C8orf34 NM_052958 exon8 c.C1221T p.N407N ACTGAACATCTGT . 144.0 72.0 138.0 0.0 . 170 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77768445 77768445 + Silent SNP A A T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZFHX4 NM_024721 exon10 c.A9288T p.T3096T GCCAACAGCCTAC . 135.0 51.0 97.0 0.0 . 878 . . Atlas-SNP VPS13B 157680 hgsc.bcm.edu hg19 8 100123343 100123343 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . VPS13B NM_152564 exon6 c.A598T p.R200X GTGCTGAGAAAGG . 399.0 98.0 176.0 0.0 . 811 . . Atlas-SNP ZFPM2 23414 hgsc.bcm.edu hg19 8 106811123 106811123 + Missense_Mutation SNP C C G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZFPM2 NM_012082 exon7 c.C911G p.T304S AGTGCACCAAGAG . 193.0 8.0 74.0 0.0 . 219 . . Atlas-SNP ZNF250 58500 hgsc.bcm.edu hg19 8 146107094 146107094 + Missense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZNF250 NM_021061 exon6 c.C1489A p.H497N TCAGGTGCACAAT . 61.0 36.0 85.0 0.0 . 37 . . Atlas-SNP CDKN2A 1029 hgsc.bcm.edu hg19 9 21994138 21994138 + Missense_Mutation SNP C C G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 CDKN2A_ENST00000361570,NS,carcinoma,0,1 CDKN2A NM_058195 exon1 c.G193C p.G65R TCCTACCTGGTCT . 56.0 16.0 47.0 0.0 . 4810 . . Atlas-SNP TMC1 117531 hgsc.bcm.edu hg19 9 75406907 75406907 + Missense_Mutation SNP G G C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TMC1 NM_138691 exon16 c.G1330C p.G444R CTACTGGGACGCA . 142.0 49.0 188.0 0.0 . 87 . . Atlas-SNP RASEF 158158 hgsc.bcm.edu hg19 9 85640772 85640772 + Missense_Mutation SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . RASEF NM_152573 exon2 c.T496C p.Y166H GTTCATATGGCTG . 94.0 4.0 146.0 0.0 . 69 . . Atlas-SNP DIRAS2 54769 hgsc.bcm.edu hg19 9 93375592 93375592 + Missense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . DIRAS2 NM_017594 exon2 c.C518A p.T173N CTCACGGTCCTGC . 89.0 4.0 102.0 0.0 . 21 . . Atlas-SNP LHX6 26468 hgsc.bcm.edu hg19 9 124989224 124989224 + Missense_Mutation SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . LHX6 NM_014368 exon3 c.T242C p.V81A GAGCAGACAGATG . 27.0 11.0 49.0 0.0 . 73 . . Atlas-SNP AKR1C4 1109 hgsc.bcm.edu hg19 10 5238850 5238850 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . AKR1C4 NM_001818 exon1 c.G20A p.R7H ATCAGCGTGTAGA . 190.0 116.0 129.0 0.0 . 57 . . Atlas-SNP FAM171A1 221061 hgsc.bcm.edu hg19 10 15256432 15256432 + Silent SNP G G C rs143895945 alternate_allele TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . FAM171A1 NM_001010924 exon8 c.C1155G p.P385P GGCCTCGGGGCGG . 151.0 31.0 94.0 0.0 . 252 . G|1.000;A|0.000 Atlas-SNP ZNF485 220992 hgsc.bcm.edu hg19 10 44111881 44111881 + Silent SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZNF485 NM_145312 exon5 c.T390C p.Y130Y GAACTATAAGTGC . 203.0 101.0 243.0 0.0 . 102 . . Atlas-SNP STOX1 219736 hgsc.bcm.edu hg19 10 70646233 70646233 + Missense_Mutation SNP G G C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . STOX1 NM_152709 exon3 c.G2681C p.R894T AAATGAGAAAACA . 103.0 21.0 115.0 0.0 . 75 . . Atlas-SNP SLC35G1 159371 hgsc.bcm.edu hg19 10 95660950 95660950 + Silent SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . . NM_001134658 exon3 c.C801T p.V267V AAGTGTCATCATC . 161.0 28.0 168.0 0.0 . . . . Atlas-SNP SEC23IP 11196 hgsc.bcm.edu hg19 10 121678006 121678006 + Missense_Mutation SNP C C G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SEC23IP NM_007190 exon10 c.C1855G p.H619D CAGCTACATTTTC . 66.0 26.0 122.0 0.0 . 100 . . Atlas-SNP PTPN5 84867 hgsc.bcm.edu hg19 11 18787389 18787389 + Missense_Mutation SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PTPN5 NM_032781 exon3 c.G62A p.G21E AGGGCCCCTCCCT . 94.0 27.0 98.0 0.0 . 163 . . Atlas-SNP CCDC88B 283234 hgsc.bcm.edu hg19 11 64110657 64110657 + Missense_Mutation SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CCDC88B NM_032251 exon11 c.C1069T p.R357W GAGGAGCGGGTGC . 29.0 12.0 36.0 0.0 . 89 . . Atlas-SNP B3GNT1 11041 hgsc.bcm.edu hg19 11 66114190 66114190 + Missense_Mutation SNP A A T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . B3GNT1 NM_006876 exon1 c.T827A p.V276E AGCTGCACCAGCT . 45.0 15.0 74.0 0.0 . 28 . . Atlas-SNP NUMA1 4926 hgsc.bcm.edu hg19 11 71725431 71725431 + Missense_Mutation SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . NUMA1 NM_006185 exon15 c.G3118A p.E1040K GCTGCTCGTTGAG . 23.0 9.0 56.0 0.0 . 142 . . Atlas-SNP PGM2L1 283209 hgsc.bcm.edu hg19 11 74058249 74058249 + Missense_Mutation SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PGM2L1 NM_173582 exon7 c.G883A p.D295N CTGGATCAGGATC . 97.0 23.0 148.0 0.0 . 59 . . Atlas-SNP KCNE3 10008 hgsc.bcm.edu hg19 11 74168597 74168597 + Silent SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . KCNE3 NM_005472 exon3 c.C12T p.T4T TCCATTGGTAGTC . 88.0 26.0 138.0 0.0 . 7 . . Atlas-SNP TRPC6 7225 hgsc.bcm.edu hg19 11 101344488 101344488 + Missense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TRPC6 NM_004621 exon7 c.C1761A p.D587E AGAGGGGTCCCAC . 66.0 23.0 137.0 0.0 . 132 . . Atlas-SNP NEUROD4 58158 hgsc.bcm.edu hg19 12 55420588 55420588 + Missense_Mutation SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . NEUROD4 NM_021191 exon2 c.A365G p.K122R CCCAAAAACTTTC . 129.0 34.0 119.0 0.0 . 87 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 71016198 71016198 + Missense_Mutation SNP G G C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PTPRB NM_001109754 exon3 c.C680G p.T227S GGCTGAGTAGTCG . 78.0 19.0 88.0 0.0 . 676 . . Atlas-SNP HAL 3034 hgsc.bcm.edu hg19 12 96384225 96384225 + Silent SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . HAL NM_001258334 exon10 c.A801G p.L267L TCCAACTAGCCCA . 112.0 36.0 125.0 0.0 . 73 . . Atlas-SNP SETD1B 23067 hgsc.bcm.edu hg19 12 122260499 122260499 + Silent SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SETD1B NM_015048 exon12 c.G3885T p.P1295P ACCGCCGGAGCCT . 73.0 22.0 86.0 0.0 . 105 . . Atlas-SNP KL 9365 hgsc.bcm.edu hg19 13 33629230 33629230 + Silent SNP C C G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 KL,trunk,malignant_melanoma,0,1 KL NM_004795 exon3 c.C1377G p.S459S ATGGTCCCTCATG . 147.0 31.0 162.0 0.0 . 106 . . Atlas-SNP PCID2 55795 hgsc.bcm.edu hg19 13 113835450 113835450 + Missense_Mutation SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PCID2 NM_001258212 exon10 c.G942A p.M314I CAATAGCATTTTT . 122.0 47.0 116.0 0.0 . 30 . . Atlas-SNP LAMP1 3916 hgsc.bcm.edu hg19 13 113975881 113975881 + Missense_Mutation SNP T T G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . LAMP1 NM_005561 exon8 c.T953G p.F318C CTGCCTTTAAAGC . 161.0 16.0 127.0 0.0 . 41 . . Atlas-SNP MDGA2 161357 hgsc.bcm.edu hg19 14 48143777 48143777 + Missense_Mutation SNP C C A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . MDGA2 NM_001113498 exon1 c.G223T p.G75C CGAGACCGTACAG . 102.0 26.0 159.0 0.0 . 470 . . Atlas-SNP ATL1 51062 hgsc.bcm.edu hg19 14 51079994 51079994 + Silent SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ATL1 NM_015915 exon7 c.T648C p.V216V TCTTGTTCGAGAC . 109.0 16.0 112.0 0.0 . 46 . . Atlas-SNP PCNX 22990 hgsc.bcm.edu hg19 14 71479802 71479802 + Missense_Mutation SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PCNX NM_014982 exon11 c.A2879G p.Y960C CTACTTACGGCCC . 70.0 29.0 108.0 0.0 . 198 . . Atlas-SNP PCNX 22990 hgsc.bcm.edu hg19 14 71479827 71479827 + Silent SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PCNX NM_014982 exon11 c.A2904G p.Q968Q TGCCCAAAAGGTT . 71.0 30.0 100.0 0.0 . 198 . . Atlas-SNP C14orf166B 145497 hgsc.bcm.edu hg19 14 77297607 77297607 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . C14orf166B NM_194287 exon3 c.G279A p.M93I GCTGATGGGTGTA . 99.0 47.0 144.0 0.0 . 52 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105417141 105417141 + Missense_Mutation SNP G G T rs372521162 alternate_allele TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . AHNAK2 NM_138420 exon7 c.C4647A p.D1549E CTCCAGGTCAGCA . 175.0 7.0 217.0 0.0 . 719 . . Atlas-SNP NIPA1 123606 hgsc.bcm.edu hg19 15 23086388 23086388 + Silent SNP C C A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 NIPA1,NS,carcinoma,0,1 NIPA1 NM_144599 exon1 c.G24T p.A8A CGCCGCCGCTGCC . 42.0 2.0 130.0 0.0 . 26 . . Atlas-SNP HS3ST6 64711 hgsc.bcm.edu hg19 16 1961878 1961878 + Missense_Mutation SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . HS3ST6 NM_001009606 exon2 c.A649G p.S217G CCCCGCTGACGAA . 105.0 44.0 115.0 0.0 . 26 . . Atlas-SNP LAT 27040 hgsc.bcm.edu hg19 16 29001280 29001280 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . LAT NM_001014989 exon12 c.G757T p.E253X GCAGAGGAAGTGG . 65.0 14.0 78.0 0.0 . 22 . . Atlas-SNP TAOK2 9344 hgsc.bcm.edu hg19 16 29998697 29998697 + Missense_Mutation SNP G G T rs144609126 alternate_allele TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TAOK2 NM_016151 exon16 c.G3104T p.R1035L GCTGGCGCCGAGG . 71.0 24.0 75.0 0.0 . 142 . G|1.000;A|0.000 Atlas-SNP BRD7 29117 hgsc.bcm.edu hg19 16 50357578 50357578 + Missense_Mutation SNP A A T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . BRD7 NM_013263 exon12 c.T1363A p.Y455N ACGGATAATCTTG . 80.0 25.0 92.0 0.0 . 61 . . Atlas-SNP CHD9 80205 hgsc.bcm.edu hg19 16 53307551 53307551 + Silent SNP T T A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CHD9 NM_025134 exon23 c.T4731A p.P1577P AGCTCCTGTACCC . 362.0 120.0 405.0 0.0 . 203 . . Atlas-SNP TCF25 22980 hgsc.bcm.edu hg19 16 89977033 89977033 + Missense_Mutation SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TCF25 NM_014972 exon17 c.C1834T p.L612F ATTGCTCTCTTCT . 51.0 12.0 64.0 0.0 . 61 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7574006 7574006 + Missense_Mutation SNP A A C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 TP53_ENST00000269305,colon,carcinoma,0,2 TP53 NM_000546 exon10 c.T1021G p.F341V CTCGGAACATCTC . 109.0 74.0 147.0 0.0 . 33396 . . Atlas-SNP SLFN11 91607 hgsc.bcm.edu hg19 17 33679852 33679852 + Missense_Mutation SNP T T A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SLFN11 NM_152270 exon5 c.A2229T p.K743N CATTTCTTTTTGT . 130.0 35.0 91.0 0.0 . 112 . . Atlas-SNP SPATA20 64847 hgsc.bcm.edu hg19 17 48632950 48632950 + Missense_Mutation SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SPATA20 NM_022827 exon17 c.A2336G p.Y779C CTGCATATGTGTG . 77.0 15.0 79.0 0.0 . 59 . . Atlas-SNP CACNA1G 8913 hgsc.bcm.edu hg19 17 48653617 48653617 + Silent SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CACNA1G NM_001256360 exon8 c.C1854T p.T618T CCCAACCCTCACC . 351.0 105.0 306.0 0.0 . 659 . . Atlas-SNP CACNA1G 8913 hgsc.bcm.edu hg19 17 48696133 48696133 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CACNA1G NM_001256325 exon33 c.G5566A p.V1856M ATCGCCGTGCTGA . 133.0 25.0 151.0 0.0 . 659 . . Atlas-SNP PGS1 9489 hgsc.bcm.edu hg19 17 76411090 76411090 + Silent SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PGS1 NM_024419 exon8 c.G1533A p.L511L GGCCCTGCAGCAG . 104.0 46.0 99.0 0.0 . 30 . . Atlas-SNP CDH2 1000 hgsc.bcm.edu hg19 18 25589824 25589824 + Silent SNP T T G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CDH2 NM_001792 exon5 c.A559C p.R187R TATCTCTATCAGA . 62.0 19.0 47.0 0.0 . 194 . . Atlas-SNP ZNF430 80264 hgsc.bcm.edu hg19 19 21216318 21216318 + Silent SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZNF430 NM_025189 exon3 c.C153T p.C51C GCAATGCCTGGAC . 126.0 48.0 166.0 0.0 . 59 . . Atlas-SNP ZNF568 374900 hgsc.bcm.edu hg19 19 37440949 37440949 + Missense_Mutation SNP A A T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZNF568 NM_198539 exon7 c.A894T p.R298S CCACAGAATTCAT . 115.0 15.0 122.0 0.0 . 106 . . Atlas-SNP CYP2A6 1548 hgsc.bcm.edu hg19 19 41355743 41355743 + Missense_Mutation SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CYP2A6 NM_000762 exon2 c.A323G p.D108G ACCCAGTCGAAGG . 200.0 46.0 228.0 0.0 . 69 . . Atlas-SNP ZNF845 91664 hgsc.bcm.edu hg19 19 53856625 53856625 + Silent SNP A A G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZNF845 NM_138374 exon4 c.A2697G p.Q899Q TCAACAAGCACAC . 160.0 55.0 149.0 0.0 . 101 . . Atlas-SNP CSRP2BP 57325 hgsc.bcm.edu hg19 20 18143146 18143146 + Missense_Mutation SNP A A T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CSRP2BP NM_020536 exon6 c.A1228T p.I410L GAACAGATAAAGC . 152.0 8.0 190.0 0.0 . 80 . . Atlas-SNP CSE1L 1434 hgsc.bcm.edu hg19 20 47682737 47682737 + Missense_Mutation SNP T T G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CSE1L NM_001256135 exon4 c.T237G p.D79E TGAAGATGAACCA . 114.0 37.0 135.0 0.0 . 83 . . Atlas-SNP ZFP64 55734 hgsc.bcm.edu hg19 20 50803417 50803417 + Silent SNP A A C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZFP64 NM_018197 exon2 c.T240G p.T80T GGTCTGAGTCTGG . 119.0 39.0 150.0 0.0 . 240 . . Atlas-SNP PCK1 5105 hgsc.bcm.edu hg19 20 56138179 56138179 + Missense_Mutation SNP G G A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PCK1 NM_002591 exon5 c.G706A p.G236S GGGTACGGCGGGA . 85.0 33.0 92.0 0.0 . 95 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57766466 57766466 + Missense_Mutation SNP C C A rs143620250 bycluster;by1000genomes;alternate_allele TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZNF831 NM_178457 exon1 c.C392A p.T131K GCCCCACGCTGGG . 134.0 43.0 116.0 0.0 . 287 . C|0.999;T|0.001 Atlas-SNP IFNGR2 3460 hgsc.bcm.edu hg19 21 34805131 34805131 + Missense_Mutation SNP A A C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . IFNGR2 NM_005534 exon6 c.A832C p.K278Q CTGATTAAATACT . 106.0 19.0 102.0 0.0 . 30 . . Atlas-SNP DOPEY2 9980 hgsc.bcm.edu hg19 21 37617605 37617605 + Silent SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . DOPEY2 NM_005128 exon19 c.C3327T p.H1109H CGAGCACACCGAG . 76.0 15.0 85.0 0.0 . 184 . . Atlas-SNP MICAL3 57553 hgsc.bcm.edu hg19 22 18324653 18324653 + Silent SNP C C T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . MICAL3 NM_015241 exon20 c.G2736A p.E912E CTGAGTCTCCTCC . 27.0 12.0 56.0 0.0 . 53 . . Atlas-SNP ATF4 468 hgsc.bcm.edu hg19 22 39918368 39918368 + Missense_Mutation SNP G G A rs372679887 TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ATF4 NM_001675 exon2 c.G817A p.V273I GCAAAAGTAAAGG . 359.0 104.0 388.0 0.0 . 27 . . Atlas-SNP CENPM 79019 hgsc.bcm.edu hg19 22 42341233 42341233 + Silent SNP T T C novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CENPM NM_024053 exon4 c.A306G p.T102T ACCACCTGTGGCG . 167.0 37.0 161.0 0.0 . 8 . . Atlas-SNP ZBED1 9189 hgsc.bcm.edu hg19 X 2408700 2408700 + Missense_Mutation SNP C C A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ZBED1 NM_001171135 exon2 c.G61T p.A21S TCTTGGCGCGGGG . 114.0 25.0 111.0 0.0 . 64 . . Atlas-SNP MED12 9968 hgsc.bcm.edu hg19 X 70346907 70346907 + Missense_Mutation SNP G G T novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . MED12 NM_005120 exon20 c.G2774T p.C925F GCCTGTGCATCGT . 45.0 30.0 52.0 0.0 . 984 . . Atlas-SNP PPFIBP2 8495 hgsc.bcm.edu hg19 11 7647047 7647070 + In_Frame_Del DEL GATGCAGAAATTGAGCGTCTGCAC GATGCAGAAATTGAGCGTCTGCAC - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 GATGCAGAAATTGAGCGTCTGCAC GATGCAGAAATTGAGCGTCTGCAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PPFIBP2 NM_003621 exon8 c.750_773del p.250_258del . . 115.0 23.0 200.0 0.0 . 87 . . Atlas-INDEL LAMP1 3916 hgsc.bcm.edu hg19 13 113975888 113975888 + Frame_Shift_Del DEL T T - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . LAMP1 NM_005561 exon8 c.959delC p.A320fs . . 158.0 15.0 120.0 0.0 . 41 . . Atlas-INDEL TTC28 23331 hgsc.bcm.edu hg19 22 28693650 28693654 + Frame_Shift_Del DEL CAGGG CAGGG - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 CAGGG CAGGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TTC28 NM_001145418 exon4 c.717_721del p.239_241del . . 34.0 15.0 76.0 0.0 . 84 . . Atlas-INDEL KDM3A 55818 hgsc.bcm.edu hg19 2 86718396 86718408 + Frame_Shift_Del DEL CAGGTAAAAATAG CAGGTAAAAATAG - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 CAGGTAAAAATAG CAGGTAAAAATAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . KDM3A NM_018433 exon25 c.3882_3885del p.1294_1295del . . 96.0 16.0 90.0 0.0 . 179 . . Atlas-INDEL POP1 10940 hgsc.bcm.edu hg19 8 99142204 99142214 + Splice_Site DEL TGAAACTATAG TGAAACTATAG - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 TGAAACTATAG TGAAACTATAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . POP1 . . . . . . 219.0 20.0 132.0 0.0 . 85 . . Atlas-INDEL MYO15A 51168 hgsc.bcm.edu hg19 17 18022452 18022473 + Frame_Shift_Del DEL GCCGCCGTGGCTACGGCCGCCT GCCGCCGTGGCTACGGCCGCCT - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 GCCGCCGTGGCTACGGCCGCCT GCCGCCGTGGCTACGGCCGCCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . MYO15A NM_016239 exon2 c.337_358del p.113_120del . . 112.0 55.0 198.0 0.0 . 268 . . Atlas-INDEL GCDH 2639 hgsc.bcm.edu hg19 19 13006809 13006810 + Frame_Shift_Ins INS - - G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . GCDH NM_013976 exon7 c.509_510insG p.Q170fs . . 73.0 20.0 72.0 0.0 . 76 . . Atlas-INDEL SYNJ1 8867 hgsc.bcm.edu hg19 21 34053835 34053837 + In_Frame_Del DEL CTG CTG - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 CTG CTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SYNJ1 NM_203446 exon11 c.1440_1442del p.480_481del . . 110.0 16.0 128.0 0.0 . 253 . . Atlas-INDEL MAPK9 5601 hgsc.bcm.edu hg19 5 179696379 179696380 + Frame_Shift_Del DEL AT AT - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . MAPK9 NM_139068 exon3 c.153_154del p.51_52del . . 171.0 34.0 149.0 0.0 . 173 . . Atlas-INDEL TTC28 23331 hgsc.bcm.edu hg19 22 28693694 28693697 + Frame_Shift_Del DEL CAAT CAAT - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 CAAT CAAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TTC28 NM_001145418 exon4 c.674_677del p.225_226del . . 51.0 22.0 78.0 0.0 . 84 . . Atlas-INDEL HCFC2 29915 hgsc.bcm.edu hg19 12 104474581 104474581 + Frame_Shift_Del DEL T T - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . HCFC2 NM_013320 exon5 c.739delC p.L247fs . . 124.0 38.0 131.0 0.0 . 94 . . Atlas-INDEL GBA2 57704 hgsc.bcm.edu hg19 9 35738529 35738530 + Frame_Shift_Ins INS - - G novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . GBA2 NM_020944 exon13 c.2048_2049insC p.G683fs . . 64.0 27.0 81.0 0.0 . 77 . . Atlas-INDEL ANKRD13A 88455 hgsc.bcm.edu hg19 12 110463610 110463611 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ANKRD13A NM_033121 exon8 c.865_866insA p.E289fs . . 194.0 64.0 193.0 0.0 . 39 . . Atlas-INDEL KIAA0947 23379 hgsc.bcm.edu hg19 5 5462837 5462838 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 KIAA0947_ENST00000296564,NS,carcinoma,0,1 KIAA0947 NM_015325 exon13 c.3390_3391insA p.Q1130fs . . 91.0 14.0 71.0 0.0 . 301 . . Atlas-INDEL SYNJ1 8867 hgsc.bcm.edu hg19 21 34053840 34053864 + Frame_Shift_Del DEL TATATCTTACTGATTGAATCACCAT TATATCTTACTGATTGAATCACCAT - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 TATATCTTACTGATTGAATCACCAT TATATCTTACTGATTGAATCACCAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . SYNJ1 NM_203446 exon11 c.1413_1437del p.471_479del . . 98.0 16.0 132.0 0.0 . 253 . . Atlas-INDEL PKHD1 5314 hgsc.bcm.edu hg19 6 51524083 51524087 + Frame_Shift_Del DEL CTGTC CTGTC - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 CTGTC CTGTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . PKHD1 NM_138694 exon61 c.10838_10842del p.3613_3614del . . 87.0 26.0 92.0 0.0 . 927 . . Atlas-INDEL TMEM62 80021 hgsc.bcm.edu hg19 15 43446911 43446911 + Frame_Shift_Del DEL T T - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . TMEM62 NM_024956 exon9 c.1063delG p.V355fs . . 73.0 24.0 68.0 0.0 . 47 . . Atlas-INDEL AGFG1 3267 hgsc.bcm.edu hg19 2 228401650 228401679 + In_Frame_Del DEL CTGGTCCTTCTGTGGCATCTTCTACAAACC CTGGTCCTTCTGTGGCATCTTCTACAAACC - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 CTGGTCCTTCTGTGGCATCTTCTACAAACC CTGGTCCTTCTGTGGCATCTTCTACAAACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . AGFG1 NM_001135187 exon11 c.1390_1419del p.464_473del . . 93.0 12.0 205.0 0.0 . 80 . . Atlas-INDEL ECT2 1894 hgsc.bcm.edu hg19 3 172479465 172479468 + Frame_Shift_Del DEL GAAT GAAT - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 GAAT GAAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . ECT2 NM_001258315 exon8 c.749_752del p.250_251del . . 165.0 74.0 130.0 0.0 . 79 . . Atlas-INDEL C2CD4A 145741 hgsc.bcm.edu hg19 15 62360051 62360051 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . C2CD4A NM_207322 exon2 c.238delC p.R80fs . . 54.0 34.0 69.0 0.0 . 3 . . Atlas-INDEL CKAP5 9793 hgsc.bcm.edu hg19 11 46765632 46765633 + In_Frame_Ins INS - - GGA novel TCGA-DD-AAD5-01A-11D-A40R-10 TCGA-DD-AAD5-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2984bd1-84c5-4dd0-9156-fec653c55146 a7e8434c-a3c4-4216-a700-809a6c5e6383 . CKAP5 NM_001008938 exon44 c.6040_6041insTCC p.T2014delinsST . . 96.0 34.0 163.0 0.0 . 134 . . Atlas-INDEL