Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ERRFI1 54206 hgsc.bcm.edu hg19 1 8073367 8073367 + Missense_Mutation SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ERRFI1 NM_018948 exon4 c.G1292A p.G431D GATATACCGCAGT . 126.0 30.0 170.0 0.0 . 42 . . Atlas-SNP VPS13D 55187 hgsc.bcm.edu hg19 1 12336568 12336568 + Missense_Mutation SNP A A G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . VPS13D NM_015378 exon19 c.A2923G p.I975V CGGTACATTTCTG . 74.0 20.0 82.0 0.0 . 316 . . Atlas-SNP MACF1 23499 hgsc.bcm.edu hg19 1 39750866 39750866 + Silent SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . MACF1 NM_012090 exon13 c.C1258A p.R420R TCACTTCGGCCGG . 184.0 38.0 173.0 0.0 . 909 . . Atlas-SNP USP24 23358 hgsc.bcm.edu hg19 1 55619849 55619849 + Silent SNP T T G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . USP24 NM_015306 exon15 c.A1755C p.A585A TTTCACTGCATAT . 93.0 22.0 136.0 0.0 . 323 . . Atlas-SNP PTGER3 5733 hgsc.bcm.edu hg19 1 71512635 71512635 + Missense_Mutation SNP A A T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PTGER3 NM_001126044 exon1 c.T626A p.F209Y CTGATGAAGCACC . 109.0 21.0 143.0 0.0 . 246 . . Atlas-SNP WARS2 10352 hgsc.bcm.edu hg19 1 119683215 119683215 + Missense_Mutation SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . WARS2 NM_015836 exon1 c.C53A p.A18E TGAAGTGCCCGGA . 76.0 12.0 77.0 0.0 . 69 . . Atlas-SNP NUF2 83540 hgsc.bcm.edu hg19 1 163318764 163318764 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . NUF2 NM_145697 exon13 c.G1154A p.G385D AAAGAGGTGCTGT . 658.0 122.0 596.0 0.0 . 138 . . Atlas-SNP TOR3A 64222 hgsc.bcm.edu hg19 1 179054765 179054765 + Missense_Mutation SNP T T G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . TOR3A NM_022371 exon3 c.T376G p.L126V TTAGGCTTAGAGT . 133.0 44.0 133.0 0.0 . 28 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216462647 216462647 + Missense_Mutation SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . USH2A NM_007123 exon11 c.G1946A p.R649K CCATTTCTAGTGC . 144.0 22.0 125.0 0.0 . 1168 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237754010 237754010 + Missense_Mutation SNP A A C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . RYR2 NM_001035 exon31 c.A3878C p.Q1293P GTTCTCAGAACAG . 71.0 13.0 85.0 0.0 . 1273 . . Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245849955 245849955 + Missense_Mutation SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . KIF26B NM_018012 exon12 c.T3670C p.S1224P CTGGCCTCGGGCT . 62.0 10.0 97.0 0.0 . 343 . . Atlas-SNP ZNF695 57116 hgsc.bcm.edu hg19 1 247150827 247150827 + Silent SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ZNF695 NM_020394 exon4 c.C990A p.G330G GACTTTGCCACAT . 114.0 12.0 113.0 0.0 . 55 . . Atlas-SNP OR2T2 401992 hgsc.bcm.edu hg19 1 248616773 248616773 + Silent SNP T T A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . OR2T2 NM_001004136 exon1 c.T675A p.T225T CCTGACTGTCCAC . 431.0 53.0 357.0 0.0 . 73 . . Atlas-SNP C2orf71 388939 hgsc.bcm.edu hg19 2 29296299 29296299 + Missense_Mutation SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . C2orf71 NM_001029883 exon1 c.A829G p.K277E GCAGCTTGCTGAC . 51.0 12.0 84.0 0.0 . 146 . . Atlas-SNP AFTPH 54812 hgsc.bcm.edu hg19 2 64800193 64800193 + Missense_Mutation SNP T T A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . AFTPH NM_017657 exon6 c.T2385A p.D795E ATCTGATCAGTTC . 310.0 28.0 337.0 0.0 . 117 . . Atlas-SNP GLI2 2736 hgsc.bcm.edu hg19 2 121736076 121736076 + Missense_Mutation SNP C C T rs121917708 alternate_allele TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . GLI2 NM_005270 exon9 c.C1435T p.R479W TGCACGCGGGAGC . 374.0 76.0 383.0 0.0 . 187 . . Atlas-SNP ARHGAP15 55843 hgsc.bcm.edu hg19 2 144193255 144193255 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ARHGAP15 NM_018460 exon7 c.C560A p.A187E AAAATGCAATTGA . 54.0 6.0 84.0 0.0 . 99 . . Atlas-SNP LY75 4065 hgsc.bcm.edu hg19 2 160708804 160708804 + Missense_Mutation SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . LY75 NM_002349 exon21 c.G2791A p.E931K ATTTTTCACAGAT . 158.0 30.0 177.0 0.0 . 151 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168101315 168101315 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . XIRP2 NM_152381 exon9 c.C3413A p.T1138N TTGATACCATAAA . 331.0 51.0 314.0 0.0 . 914 . . Atlas-SNP ZNF385B 151126 hgsc.bcm.edu hg19 2 180634264 180634264 + Silent SNP G G A rs370441083 TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ZNF385B NM_152520 exon3 c.C219T p.P73P CTGGGCGGGTGGT . 74.0 7.0 87.0 0.0 . 68 . . Atlas-SNP ORC2 4999 hgsc.bcm.edu hg19 2 201798638 201798638 + Silent SNP A A G rs149149549 TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ORC2 NM_006190 exon10 c.T768C p.D256D TGTTCTATCAGAG . 123.0 8.0 128.0 0.0 . 48 . A|1.000;G|0.000 Atlas-SNP C2orf80 389073 hgsc.bcm.edu hg19 2 209045541 209045541 + Splice_Site SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . C2orf80 NM_001099334 exon7 c.295-1G>T . ACTGTTCTGTTAA . 270.0 56.0 267.0 0.0 . 19 . . Atlas-SNP ITM2C 81618 hgsc.bcm.edu hg19 2 231742197 231742197 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ITM2C NM_030926 exon5 c.G644A p.G215E CCCTGGGGTCCTT . 200.0 11.0 192.0 0.0 . 17 . . Atlas-SNP CHRND 1144 hgsc.bcm.edu hg19 2 233392134 233392134 + Silent SNP T T A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . CHRND NM_000751 exon3 c.T222A p.T74T CCTCACTACCAAT . 118.0 50.0 107.0 0.0 . 67 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238296564 238296564 + Missense_Mutation SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 COL6A3,colon,carcinoma,0,1 COL6A3 NM_004369 exon4 c.G973A p.A325T CAAGGGCGAGGCC . 202.0 10.0 224.0 0.0 . 608 . . Atlas-SNP GLYCTK 132158 hgsc.bcm.edu hg19 3 52324605 52324605 + Silent SNP C C T rs374934931 TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . GLYCTK NM_001144951 exon2 c.C247T p.L83L CTCTACCTGGTGG . 92.0 13.0 116.0 0.0 . 30 . . Atlas-SNP SEMA3G 56920 hgsc.bcm.edu hg19 3 52471666 52471666 + Silent SNP A A T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . SEMA3G NM_020163 exon15 c.T1755A p.L585L TGCCACAAGTCCC . 147.0 41.0 149.0 0.0 . 58 . . Atlas-SNP GPR149 344758 hgsc.bcm.edu hg19 3 154146848 154146848 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 GPR149,NS,carcinoma,0,1 GPR149 NM_001038705 exon1 c.G557T p.C186F CTGGAGCAGTCCA . 140.0 12.0 187.0 0.0 . 134 . . Atlas-SNP TTC14 151613 hgsc.bcm.edu hg19 3 180320103 180320103 + Silent SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . TTC14 NM_001042601 exon1 c.C54T p.L18L TTTGCTCTCTCTA . 55.0 9.0 40.0 0.0 . 112 . . Atlas-SNP OPA1 4976 hgsc.bcm.edu hg19 3 193376712 193376712 + Missense_Mutation SNP A A T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . OPA1 NM_130837 exon24 c.A2368T p.I790L CGATCCATATCTG . 110.0 33.0 97.0 0.0 . 79 . . Atlas-SNP TNIP2 79155 hgsc.bcm.edu hg19 4 2746185 2746185 + Missense_Mutation SNP G G A rs145123249 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . TNIP2 NM_024309 exon5 c.C955T p.R319W GAGCCCGTTCCCG . 93.0 7.0 116.0 0.0 . 28 . G|1.000;T|0.000 Atlas-SNP NPFFR2 10886 hgsc.bcm.edu hg19 4 72897911 72897911 + Missense_Mutation SNP G G A rs200084669 by1000genomes;alternate_allele TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 NPFFR2,NS,carcinoma,0,1 NPFFR2 NM_004885 exon1 c.G293A p.R98Q CTCGCCGGGAGAG . 236.0 19.0 331.0 2.0 . 98 . G|1.000;C|0.000 Atlas-SNP PDLIM5 10611 hgsc.bcm.edu hg19 4 95583576 95583576 + Missense_Mutation SNP A A G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PDLIM5 NM_001256426 exon16 c.A1676G p.Y559C CAGATTATTATGC . 50.0 10.0 56.0 0.0 . 76 . . Atlas-SNP EGF 1950 hgsc.bcm.edu hg19 4 110865040 110865040 + Silent SNP A A G rs369090159 TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . EGF NM_001963 exon4 c.A552G p.R184R TTATAGAGCAGAT . 193.0 34.0 188.0 0.0 . 113 . . Atlas-SNP PLRG1 5356 hgsc.bcm.edu hg19 4 155462030 155462030 + Silent SNP A A G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PLRG1 NM_002669 exon9 c.T744C p.T248T CCGCACAGTACTA . 152.0 26.0 178.0 0.0 . 43 . . Atlas-SNP CDH18 1016 hgsc.bcm.edu hg19 5 19473363 19473363 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . CDH18 NM_004934 exon13 c.G2345T p.G782V ATTTCTCCATAGA . 165.0 22.0 177.0 0.0 . 561 . . Atlas-SNP NIPBL 25836 hgsc.bcm.edu hg19 5 37048674 37048674 + Silent SNP A A G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . NIPBL NM_015384 exon39 c.A6660G p.L2220L TATTTTATCTGAT . 535.0 118.0 551.0 0.0 . 513 . . Atlas-SNP BDP1 55814 hgsc.bcm.edu hg19 5 70806321 70806321 + Silent SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . BDP1 NM_018429 exon17 c.G3402A p.V1134V AGAGGTGATTGAT . 243.0 58.0 242.0 0.0 . 204 . . Atlas-SNP TENM2 57451 hgsc.bcm.edu hg19 5 167689579 167689579 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . . NM_001122679 exon29 c.G8062A p.D2688N GTCCTGGACCAGG . 134.0 14.0 156.0 0.0 . . . . Atlas-SNP SH3PXD2B 285590 hgsc.bcm.edu hg19 5 171766062 171766062 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . SH3PXD2B NM_001017995 exon13 c.G2047T p.G683W CCTCCCCATCCAA . 90.0 13.0 97.0 0.0 . 91 . . Atlas-SNP HK3 3101 hgsc.bcm.edu hg19 5 176310869 176310869 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . HK3 NM_002115 exon15 c.C1955T p.A652V TCCACTGCCTGCA . 103.0 20.0 85.0 0.0 . 210 . . Atlas-SNP KIAA0319 9856 hgsc.bcm.edu hg19 6 24566957 24566957 + Missense_Mutation SNP T T A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . KIAA0319 NM_001168377 exon14 c.A2160T p.R720S CCGGGCTCTGGGA . 70.0 12.0 70.0 0.0 . 117 . . Atlas-SNP BTN3A3 10384 hgsc.bcm.edu hg19 6 26452498 26452498 + Silent SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . BTN3A3 NM_006994 exon11 c.G1614A p.P538P GACCCCGGGCTTA . 65.0 11.0 80.0 0.0 . 56 . . Atlas-SNP OR14J1 442191 hgsc.bcm.edu hg19 6 29274701 29274701 + Missense_Mutation SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . OR14J1 NM_030946 exon1 c.T235C p.S79P CCCCAGTCCATTG . 149.0 25.0 149.0 0.0 . 43 . . Atlas-SNP NOTCH4 4855 hgsc.bcm.edu hg19 6 32182001 32182001 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . NOTCH4 NM_004557 exon13 c.G2053T p.G685W CTGGCCCCGTCCA . 134.0 23.0 135.0 0.0 . 201 . . Atlas-SNP PTCHD4 442213 hgsc.bcm.edu hg19 6 47846992 47846992 + Missense_Mutation SNP A A G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . . NM_001013732 exon3 c.T1588C p.W530R TGTTCCAGTACTC . 57.0 7.0 63.0 0.0 . . . . Atlas-SNP SLC2A12 154091 hgsc.bcm.edu hg19 6 134323190 134323190 + Missense_Mutation SNP T T G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . SLC2A12 NM_145176 exon4 c.A1645C p.I549L CAGGTATAAACAT . 83.0 14.0 81.0 0.0 . 43 . . Atlas-SNP PACRG 135138 hgsc.bcm.edu hg19 6 163735950 163735950 + Silent SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PACRG NM_152410 exon7 c.C822T p.Y274Y GCGCTACGGAGGA . 278.0 62.0 256.0 0.0 . 48 . . Atlas-SNP HOXA6 3203 hgsc.bcm.edu hg19 7 27187096 27187096 + Silent SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . HOXA6 NM_024014 exon1 c.G273T p.S91S ACTGCCCGAGGGC . 111.0 25.0 142.0 0.0 . 25 . . Atlas-SNP ABCB1 5243 hgsc.bcm.edu hg19 7 87179184 87179184 + Missense_Mutation SNP T T A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ABCB1 NM_000927 exon14 c.A1537T p.I513F TCATGATAAAGTC . 81.0 16.0 111.0 0.0 . 263 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 132192559 132192559 + Silent SNP A A T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PLXNA4 NM_001105543 exon2 c.T894A p.I298I ACAGCCAATGGGC . 90.0 11.0 105.0 0.0 . 873 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 2800024 2800024 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 CSMD1_ENST00000537824,NS,malignant_melanoma,0,4 CSMD1 NM_033225 exon69 c.C10505A p.S3502X AACCCTGATAAAA . 77.0 18.0 109.0 0.0 . 1469 . . Atlas-SNP DLC1 10395 hgsc.bcm.edu hg19 8 12957624 12957624 + Missense_Mutation SNP C C G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 DLC1,bladder,carcinoma,0,3 DLC1 NM_182643 exon9 c.G2222C p.S741T CTGCTGCTGGTCT . 39.0 3.0 51.0 2.0 . 411 . . Atlas-SNP KAT6A 7994 hgsc.bcm.edu hg19 8 41805294 41805294 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . . NM_001099412 exon12 c.G1877T p.C626F AGGTGGCAGCCCT . 157.0 20.0 189.0 0.0 . . . . Atlas-SNP PPP1R42 286187 hgsc.bcm.edu hg19 8 67929857 67929857 + Silent SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PPP1R42 NM_001013626 exon2 c.A126G p.A42A TACAATTGCATCT . 122.0 6.0 79.0 0.0 . 2 . . Atlas-SNP C8orf76 84933 hgsc.bcm.edu hg19 8 124253528 124253528 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . C8orf76 NM_032847 exon1 c.G59T p.R20M TCCGGCCTCTCCT . 353.0 137.0 201.0 0.0 . 26 . . Atlas-SNP FER1L6 654463 hgsc.bcm.edu hg19 8 125076745 125076745 + Missense_Mutation SNP C C G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . FER1L6 NM_001039112 exon26 c.C3486G p.D1162E CCCTGACTCATCC . 317.0 28.0 193.0 0.0 . 268 . . Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 132052123 132052123 + Missense_Mutation SNP T T A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ADCY8 NM_001115 exon1 c.A457T p.I153F GGAAAATGACCCC . 195.0 19.0 140.0 0.0 . 291 . . Atlas-SNP KCNQ3 3786 hgsc.bcm.edu hg19 8 133152405 133152405 + Missense_Mutation SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . KCNQ3 NM_004519 exon11 c.A1486G p.M496V CCGCCATGGGGTC . 73.0 17.0 29.0 0.0 . 164 . . Atlas-SNP MPDZ 8777 hgsc.bcm.edu hg19 9 13133827 13133827 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . MPDZ NM_003829 exon32 c.C4460T p.P1487L ACCTTGGGAAGCT . 128.0 23.0 156.0 0.0 . 324 . . Atlas-SNP FAM205A 259308 hgsc.bcm.edu hg19 9 34725939 34725939 + Missense_Mutation SNP A A T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . FAM205A NM_001141917 exon4 c.T1298A p.F433Y CCACAGAATAGCT . 169.0 17.0 217.0 0.0 . 45 . . Atlas-SNP GCNT1 2650 hgsc.bcm.edu hg19 9 79117570 79117570 + Silent SNP C C T rs139014455 TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . GCNT1 NM_001490 exon4 c.C273T p.D91D ACCTGACGACTAT . 161.0 33.0 167.0 0.0 . 52 . C|1.000;T|0.000 Atlas-SNP GABBR2 9568 hgsc.bcm.edu hg19 9 101056112 101056112 + Missense_Mutation SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . GABBR2 NM_005458 exon18 c.C2615A p.S872Y GTTCGAGAGGGCT . 82.0 15.0 82.0 0.0 . 126 . . Atlas-SNP GABBR2 9568 hgsc.bcm.edu hg19 9 101470749 101470749 + Missense_Mutation SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . GABBR2 NM_005458 exon1 c.G271A p.E91K GTGACTCGTTGCG . 68.0 8.0 64.0 0.0 . 126 . . Atlas-SNP SUSD1 64420 hgsc.bcm.edu hg19 9 114840897 114840897 + Silent SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . SUSD1 NM_022486 exon12 c.G1674A p.P558P GGTACCCGGACGT . 167.0 42.0 185.0 0.0 . 51 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 16982125 16982125 + Silent SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . CUBN NM_001081 exon37 c.C5454A p.L1818L ATAATTGAGAGGG . 162.0 21.0 157.0 0.0 . 515 . . Atlas-SNP JMJD1C 221037 hgsc.bcm.edu hg19 10 64974046 64974046 + Silent SNP A A C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . JMJD1C NM_032776 exon8 c.T1881G p.L627L AGTATTAAGTTTA . 69.0 15.0 114.0 0.0 . 347 . . Atlas-SNP NUDT13 25961 hgsc.bcm.edu hg19 10 74874164 74874164 + Missense_Mutation SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . NUDT13 NM_015901 exon2 c.T41C p.F14S AATTTTTTTGGTG . 84.0 8.0 63.0 0.0 . 16 . . Atlas-SNP CPEB3 22849 hgsc.bcm.edu hg19 10 93999237 93999237 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . CPEB3 NM_014912 exon2 c.C871T p.P291S TGAGCGGCGAGAT . 196.0 40.0 270.0 0.0 . 43 . . Atlas-SNP SFRP5 6425 hgsc.bcm.edu hg19 10 99527515 99527515 + Missense_Mutation SNP C C T rs144307831 TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . SFRP5 NM_003015 exon3 c.G710A p.R237H TCCTTGCGCTTCA . 69.0 14.0 83.0 0.0 . 32 . C|1.000;T|0.000 Atlas-SNP LZTS2 84445 hgsc.bcm.edu hg19 10 102766667 102766667 + Silent SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . LZTS2 NM_032429 exon5 c.G1752T p.R584R GCAGCGGGAGCGG . 138.0 9.0 185.0 0.0 . 57 . . Atlas-SNP DNHD1 144132 hgsc.bcm.edu hg19 11 6578767 6578767 + Missense_Mutation SNP A A G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . DNHD1 NM_144666 exon25 c.A8242G p.S2748G GATCCAAGTCTAA . 108.0 11.0 136.0 0.0 . 198 . . Atlas-SNP MICAL2 9645 hgsc.bcm.edu hg19 11 12237867 12237867 + Splice_Site SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 MICAL2_ENST00000379612,NS,carcinoma,0,2 MICAL2 NM_014632 exon8 c.948+1G>T . ATTAACGTACGTA . 73.0 12.0 50.0 0.0 . 114 . . Atlas-SNP TSG101 7251 hgsc.bcm.edu hg19 11 18503415 18503415 + Missense_Mutation SNP G G C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . TSG101 NM_006292 exon9 c.C845G p.A282G ACCTCGGCCTGAA . 59.0 10.0 71.0 0.0 . 43 . . Atlas-SNP SLC17A6 57084 hgsc.bcm.edu hg19 11 22364853 22364853 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . SLC17A6 NM_020346 exon3 c.G400A p.G134S TTTTGGGGCTACA . 87.0 29.0 92.0 0.0 . 135 . . Atlas-SNP OR5J2 282775 hgsc.bcm.edu hg19 11 55944930 55944930 + Silent SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 OR5J2,NS,carcinoma,0,1 OR5J2 NM_001005492 exon1 c.G837A p.T279T CTATACGCTAGGG . 42.0 7.0 55.0 0.0 . 98 . . Atlas-SNP MRPL48 51642 hgsc.bcm.edu hg19 11 73555916 73555916 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . MRPL48 NM_016055 exon5 c.G266A p.G89E AATATGGGGTTTT . 112.0 38.0 105.0 0.0 . 16 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103191757 103191757 + Splice_Site SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . DYNC2H1 NM_001080463 exon82 c.11747-1G>T . ATTATAGGTGCCA . 179.0 32.0 185.0 0.0 . 246 . . Atlas-SNP PHLDB1 23187 hgsc.bcm.edu hg19 11 118502074 118502074 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PHLDB1 NM_001144758 exon7 c.G1978A p.A660T GCAGGGGCCTCTG . 86.0 18.0 91.0 0.0 . 103 . . Atlas-SNP LAG3 3902 hgsc.bcm.edu hg19 12 6887023 6887023 + Missense_Mutation SNP T T G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . LAG3 NM_002286 exon7 c.T1367G p.L456R TCATCCTTGGTGT . 26.0 7.0 42.0 0.0 . 35 . . Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26709308 26709308 + Missense_Mutation SNP C C G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ITPR2 NM_002223 exon36 c.G4822C p.D1608H CTACATCCTAGGG . 58.0 8.0 80.0 0.0 . 270 . . Atlas-SNP SLC38A2 54407 hgsc.bcm.edu hg19 12 46764378 46764378 + Silent SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . SLC38A2 NM_018976 exon4 c.A231G p.V77V ATTAAATACTGAC . 183.0 40.0 200.0 0.0 . 36 . . Atlas-SNP CERS5 91012 hgsc.bcm.edu hg19 12 50524462 50524462 + Missense_Mutation SNP G G A rs373121500 TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 LASS5,colon,carcinoma,0,1 . NM_147190 exon10 c.C1045T p.R349C CACTGCGATCATC . 58.0 14.0 51.0 0.0 . . . . Atlas-SNP ZDHHC17 23390 hgsc.bcm.edu hg19 12 77208983 77208983 + Missense_Mutation SNP A A G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ZDHHC17 NM_015336 exon6 c.A601G p.T201A TATAGAACACATA . 93.0 22.0 94.0 0.0 . 45 . . Atlas-SNP ANO4 121601 hgsc.bcm.edu hg19 12 101381411 101381411 + Missense_Mutation SNP T T A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ANO4 NM_178826 exon7 c.T592A p.C198S AATGACTGCTACA . 67.0 17.0 69.0 0.0 . 183 . . Atlas-SNP NOS1 4842 hgsc.bcm.edu hg19 12 117681160 117681160 + Missense_Mutation SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . NOS1 NM_001204218 exon20 c.C3006A p.S1002R CTTCCAGCTGCGA . 116.0 7.0 109.0 0.0 . 240 . . Atlas-SNP WSB2 55884 hgsc.bcm.edu hg19 12 118474281 118474281 + Missense_Mutation SNP A A C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . WSB2 NM_018639 exon6 c.T695G p.I232S TTCCGAATTAACG . 106.0 22.0 116.0 0.0 . 32 . . Atlas-SNP CDH24 64403 hgsc.bcm.edu hg19 14 23524786 23524786 + Missense_Mutation SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . CDH24 NM_022478 exon2 c.G157A p.V53I CAATGACAAAGAA . 187.0 10.0 194.0 0.0 . 129 . . Atlas-SNP DCAF5 8816 hgsc.bcm.edu hg19 14 69520912 69520912 + Missense_Mutation SNP T T G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . DCAF5 NM_003861 exon9 c.A2491C p.N831H TGTGGTTGGCACA . 63.0 11.0 67.0 0.0 . 67 . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28443868 28443868 + Missense_Mutation SNP T T G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . HERC2 NM_004667 exon49 c.A7764C p.E2588D ATCACCTTCGCAC . 187.0 32.0 170.0 0.0 . 501 . . Atlas-SNP LTK 4058 hgsc.bcm.edu hg19 15 41804103 41804103 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . LTK NM_001135685 exon5 c.C569T p.A190V ATCGCCGCGTGCT . 83.0 6.0 83.0 0.0 . 117 . . Atlas-SNP KIAA1199 57214 hgsc.bcm.edu hg19 15 81221411 81221411 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . KIAA1199 NM_018689 exon20 c.C2508A p.S836R GAACAGCTTGTTT . 314.0 37.0 314.0 0.0 . 118 . . Atlas-SNP WDR24 84219 hgsc.bcm.edu hg19 16 735410 735410 + Silent SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . WDR24 NM_032259 exon7 c.G1866A p.A622A GTAGAGCGCGTGT . 125.0 8.0 139.0 0.0 . 111 . . Atlas-SNP HIRIP3 8479 hgsc.bcm.edu hg19 16 30005783 30005783 + Missense_Mutation SNP T T G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . HIRIP3 NM_003609 exon4 c.A683C p.E228A TCCTCTTCACTCT . 82.0 11.0 69.0 0.0 . 45 . . Atlas-SNP GSE1 23199 hgsc.bcm.edu hg19 16 85699912 85699912 + Nonsense_Mutation SNP C C G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . . NM_014615 exon13 c.C3089G p.S1030X ACGAGTCAGTGCT . 136.0 45.0 189.0 0.0 . . . . Atlas-SNP ACAP1 9744 hgsc.bcm.edu hg19 17 7247924 7247924 + Missense_Mutation SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ACAP1 NM_014716 exon10 c.C811T p.H271Y GAAGGACATCTCT . 60.0 5.0 70.0 0.0 . 66 . . Atlas-SNP MYH8 4626 hgsc.bcm.edu hg19 17 10298727 10298727 + Missense_Mutation SNP A A T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . MYH8 NM_002472 exon34 c.T4685A p.L1562Q ATACGCAGAATCT . 82.0 23.0 122.0 0.0 . 346 . . Atlas-SNP MYH4 4622 hgsc.bcm.edu hg19 17 10351286 10351286 + Missense_Mutation SNP A A T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . MYH4 NM_017533 exon34 c.T4814A p.L1605Q GCATCCAGTGTAC . 86.0 25.0 130.0 0.0 . 349 . . Atlas-SNP PRPSAP2 5636 hgsc.bcm.edu hg19 17 18827289 18827289 + Missense_Mutation SNP A A G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PRPSAP2 NM_001243940 exon9 c.A796G p.I266V ATTGCCATCATCG . 102.0 33.0 135.0 0.0 . 23 . . Atlas-SNP USP22 23326 hgsc.bcm.edu hg19 17 20924519 20924519 + Missense_Mutation SNP C C T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . USP22 NM_015276 exon3 c.G325A p.G109S AGATGCCTCCGTA . 66.0 5.0 102.0 0.0 . 45 . . Atlas-SNP TMIGD1 388364 hgsc.bcm.edu hg19 17 28656398 28656398 + Missense_Mutation SNP A A T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . TMIGD1 NM_206832 exon3 c.T232A p.S78T TTCCAGATTTCAA . 112.0 25.0 133.0 0.0 . 38 . . Atlas-SNP RHOT1 55288 hgsc.bcm.edu hg19 17 30528018 30528018 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . RHOT1 NM_001033568 exon14 c.G1144A p.G382S TATTTGGGCTATC . 87.0 20.0 70.0 0.0 . 69 . . Atlas-SNP KRTAP9-3 83900 hgsc.bcm.edu hg19 17 39388885 39388885 + Silent SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . KRTAP9-3 NM_031962 exon1 c.G132A p.Q44Q CTGCCAGCCTTGC . 82.0 12.0 118.0 0.0 . 11 . . Atlas-SNP BRCA1 672 hgsc.bcm.edu hg19 17 41245524 41245524 + Missense_Mutation SNP G G C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . BRCA1 NM_007300 exon10 c.C2024G p.A675G CCAGTTGCAGGTT . 98.0 17.0 121.0 0.0 . 304 . . Atlas-SNP UNC13D 201294 hgsc.bcm.edu hg19 17 73830716 73830716 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . UNC13D NM_199242 exon22 c.G2074T p.G692C CCTGGCCTTGGTC . 445.0 107.0 627.0 1.0 . 68 . . Atlas-SNP EXOC7 23265 hgsc.bcm.edu hg19 17 74085364 74085364 + Silent SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . EXOC7 NM_001145297 exon9 c.C1092T p.Y364Y GTGGATGTAGGCA . 70.0 9.0 67.0 0.0 . 47 . . Atlas-SNP EMILIN2 84034 hgsc.bcm.edu hg19 18 2885112 2885112 + Silent SNP T T A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . EMILIN2 NM_032048 exon3 c.T408A p.P136P TCGGCCTCGAAAC . 105.0 22.0 90.0 0.0 . 97 . . Atlas-SNP ANKRD12 23253 hgsc.bcm.edu hg19 18 9254666 9254666 + Missense_Mutation SNP A A C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ANKRD12 NM_015208 exon9 c.A1401C p.K467N ACACAAACAGAAA . 332.0 55.0 378.0 0.0 . 167 . . Atlas-SNP RIT2 6014 hgsc.bcm.edu hg19 18 40323617 40323617 + Silent SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . RIT2 NM_002930 exon5 c.C495T p.A165A TCTGAGGGCTGCA . 187.0 30.0 177.0 0.0 . 56 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9063744 9063744 + Missense_Mutation SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . MUC16 NM_024690 exon3 c.C23702A p.A7901E ATTTCTGCTGATT . 121.0 7.0 161.0 0.0 . 4315 . . Atlas-SNP FCHO1 23149 hgsc.bcm.edu hg19 19 17877522 17877522 + Missense_Mutation SNP A A C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . FCHO1 NM_001161358 exon6 c.A239C p.K80T CGGACAAGCTGGC . 137.0 25.0 155.0 0.0 . 69 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38376636 38376636 + Missense_Mutation SNP C C T rs373987886 TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . WDR87 NM_031951 exon6 c.G7558A p.V2520I GGCTTACGTCTGC . 116.0 28.0 160.0 0.0 . 191 . . Atlas-SNP HNRNPL 3191 hgsc.bcm.edu hg19 19 39329111 39329111 + Missense_Mutation SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . HNRNPL NM_001533 exon10 c.C1483A p.R495S GGATGCGGTTCTT . 100.0 5.0 105.0 0.0 . 67 . . Atlas-SNP CLASRP 11129 hgsc.bcm.edu hg19 19 45567337 45567337 + Missense_Mutation SNP A A G novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . CLASRP NM_007056 exon12 c.A973G p.K325E GAGGAGAAGATCA . 106.0 32.0 104.0 0.0 . 44 . . Atlas-SNP PTPRH 5794 hgsc.bcm.edu hg19 19 55715190 55715190 + Silent SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PTPRH NM_002842 exon5 c.C846T p.D282D TACTCCGTCTTTC . 147.0 9.0 127.0 0.0 . 139 . . Atlas-SNP ZNF135 7694 hgsc.bcm.edu hg19 19 58579350 58579350 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . ZNF135 NM_007134 exon4 c.G1570A p.G524S GACTGCGGCAAGG . 94.0 19.0 120.0 0.0 . 159 . . Atlas-SNP NELFCD 51497 hgsc.bcm.edu hg19 20 57568786 57568786 + Silent SNP T T A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . . NM_198976 exon13 c.T1602A p.T534T GGACACTGACATT . 85.0 16.0 86.0 0.0 . . . . Atlas-SNP DIDO1 11083 hgsc.bcm.edu hg19 20 61542449 61542449 + Silent SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . DIDO1 NM_080797 exon3 c.G516T p.R172R CTGTTCCCGCTTC . 64.0 19.0 98.0 0.0 . 321 . . Atlas-SNP PCNT 5116 hgsc.bcm.edu hg19 21 47831466 47831466 + Missense_Mutation SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PCNT NM_006031 exon28 c.G5479T p.A1827S CAGGGCGCAGAGG . 101.0 25.0 142.0 0.0 . 283 . . Atlas-SNP CARD10 29775 hgsc.bcm.edu hg19 22 37887846 37887846 + Missense_Mutation SNP C C A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . CARD10 NM_014550 exon19 c.G2780T p.R927L ACACCCCGAGCAC . 48.0 6.0 42.0 0.0 . 55 . . Atlas-SNP BMX 660 hgsc.bcm.edu hg19 X 15560110 15560110 + Missense_Mutation SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . BMX NM_001721 exon15 c.T1400C p.L467P GGAAACTCAGCCA . 256.0 46.0 263.0 0.0 . 73 . . Atlas-SNP NR0B1 190 hgsc.bcm.edu hg19 X 30327407 30327407 + Missense_Mutation SNP G G A novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . NR0B1 NM_000475 exon1 c.C74T p.A25V GGAGCCGCGCGCG . 105.0 24.0 113.0 0.0 . 61 . . Atlas-SNP COL4A5 1287 hgsc.bcm.edu hg19 X 107824223 107824223 + Missense_Mutation SNP G G T novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . COL4A5 NM_000495 exon16 c.G902T p.G301V AACCAGGCAAAGA . 360.0 76.0 421.0 0.0 . 262 . . Atlas-SNP SLC25A43 203427 hgsc.bcm.edu hg19 X 118540512 118540512 + Missense_Mutation SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . SLC25A43 NM_145305 exon2 c.T365C p.I122T CCACCATTGTAAC . 210.0 46.0 198.0 0.0 . 29 . . Atlas-SNP MCF2 4168 hgsc.bcm.edu hg19 X 138686908 138686908 + Missense_Mutation SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . MCF2 NM_001171876 exon19 c.A1903G p.I635V AGAAAATGCTGTG . 832.0 169.0 930.0 1.0 . 432 . . Atlas-SNP ND2 0 hgsc.bcm.edu hg19 MT 5038 5038 + Missense_Mutation SNP T T C novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . . ENST00000361453 exon1 c.T569C p.M190T GATGAATAATAGC . 36.0 4.0 23.0 0.0 . . . . Atlas-SNP DSC2 1824 hgsc.bcm.edu hg19 18 28662231 28662231 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . DSC2 NM_004949 exon9 c.1237delA p.N413fs . . 129.0 17.0 107.0 0.0 . 168 . . Atlas-INDEL PLG 5340 hgsc.bcm.edu hg19 6 161127481 161127481 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . PLG NM_000301 exon2 c.91delG p.A31fs . . 614.0 134.0 582.0 0.0 . 150 . . Atlas-INDEL BRD7 29117 hgsc.bcm.edu hg19 16 50357551 50357552 + Frame_Shift_Del DEL GT GT - novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . BRD7 NM_013263 exon12 c.1390_1391del p.464_464del . . 75.0 11.0 88.0 0.0 . 61 . . Atlas-INDEL COL4A6 1288 hgsc.bcm.edu hg19 X 107464546 107464546 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAD1-01A-11D-A40R-10 TCGA-DD-AAD1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8179bebc-0b69-4345-9585-b23ec97837a0 2397526c-9196-4093-8c57-e47020e03b20 . COL4A6 NM_001847 exon4 c.207delT p.S69fs . . 194.0 25.0 191.0 0.0 . 270 . . Atlas-INDEL