Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MST1L 11223 hgsc.bcm.edu hg19 1 17085380 17085380 + Missense_Mutation SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . NM_001271733 exon10 c.C1311A p.D437E ATCTGGGTCTGGC . 315.0 26.0 235.0 0.0 . . . . Atlas-SNP MFAP2 4237 hgsc.bcm.edu hg19 1 17303683 17303683 + Silent SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . MFAP2 NM_017459 exon3 c.G48T p.L16L CTGAGCCAGCAAG . 129.0 55.0 100.0 0.0 . 8 . . Atlas-SNP MINOS1 440574 hgsc.bcm.edu hg19 1 19950009 19950009 + Nonsense_Mutation SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . NM_001032363 exon3 c.G154T p.G52X GGATTAGGAATGG . 46.0 11.0 52.0 0.0 . . . . Atlas-SNP ZBTB40 9923 hgsc.bcm.edu hg19 1 22837792 22837792 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ZBTB40 NM_001083621 exon11 c.A1954T p.K652X GTCCACAAATCTT . 116.0 23.0 107.0 0.0 . 87 . . Atlas-SNP RUNX3 864 hgsc.bcm.edu hg19 1 25229122 25229122 + Missense_Mutation SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . RUNX3 NM_001031680 exon6 c.C781A p.Q261K CAAACTGGCGGGG . 154.0 58.0 131.0 0.0 . 72 . . Atlas-SNP RUNX3 864 hgsc.bcm.edu hg19 1 25229123 25229123 + Silent SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . RUNX3 NM_001031680 exon6 c.C780A p.R260R AAACTGGCGGGGG . 153.0 58.0 131.0 0.0 . 72 . . Atlas-SNP USP24 23358 hgsc.bcm.edu hg19 1 55609866 55609866 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . USP24 NM_015306 exon21 c.A2373T p.L791F TTTAAATAAGTTA . 326.0 117.0 262.0 0.0 . 323 . . Atlas-SNP KANK4 163782 hgsc.bcm.edu hg19 1 62734068 62734068 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KANK4 NM_181712 exon5 c.A2122T p.K708X CATCTTTGACATG . 50.0 18.0 45.0 0.0 . 135 . . Atlas-SNP HFM1 164045 hgsc.bcm.edu hg19 1 91784922 91784922 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . HFM1 NM_001017975 exon24 c.A2608G p.I870V TGGGAATGCATCC . 228.0 56.0 178.0 0.0 . 188 . . Atlas-SNP SYCP1 6847 hgsc.bcm.edu hg19 1 115527442 115527442 + Missense_Mutation SNP T T A rs200809568 by1000genomes;alternate_allele TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SYCP1 NM_003176 exon30 c.T2656A p.F886I ATGGCCTTTGAAT . 425.0 78.0 375.0 0.0 . 149 . T|1.000;G|0.000 Atlas-SNP NHLH2 4808 hgsc.bcm.edu hg19 1 116380919 116380919 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . NHLH2 NM_001111061 exon2 c.C75T p.G25G CGTGCCGCCCAGG . 121.0 39.0 78.0 0.0 . 8 . . Atlas-SNP OR10K1 391109 hgsc.bcm.edu hg19 1 158435707 158435707 + Missense_Mutation SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . OR10K1 NM_001004473 exon1 c.G356T p.G119V CCATGGGCTATGA . 149.0 27.0 112.0 0.0 . 80 . . Atlas-SNP PTPN14 5784 hgsc.bcm.edu hg19 1 214557127 214557127 + Missense_Mutation SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 PTPN14,NS,carcinoma,0,1 PTPN14 NM_005401 exon13 c.C2071A p.Q691K GATACTGAGGGAG . 80.0 18.0 51.0 1.0 . 168 . . Atlas-SNP ESRRG 2104 hgsc.bcm.edu hg19 1 216741353 216741353 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ESRRG NM_001243518 exon5 c.T692A p.L231Q TGAACCAGCTGAG . 105.0 8.0 48.0 0.0 . 111 . . Atlas-SNP AHCTF1 25909 hgsc.bcm.edu hg19 1 247016483 247016483 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . AHCTF1 NM_015446 exon32 c.A4500T p.E1500D TTCTACTTCATGA . 624.0 71.0 438.0 0.0 . 187 . . Atlas-SNP OR2T4 127074 hgsc.bcm.edu hg19 1 248525837 248525837 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . OR2T4 NM_001004696 exon1 c.C955A p.P319T GTGAACCCTTTAA . 639.0 57.0 480.0 0.0 . 126 . . Atlas-SNP ADCY3 109 hgsc.bcm.edu hg19 2 25059804 25059804 + Silent SNP G G C rs372998415 alternate_allele TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ADCY3 NM_004036 exon8 c.C1644G p.P548P CTCCTCGGGCTTC . 99.0 7.0 53.0 0.0 . 114 . . Atlas-SNP DNMT3A 1788 hgsc.bcm.edu hg19 2 25505281 25505281 + Silent SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . DNMT3A NM_175630 exon4 c.T477C p.S159S CCCAGAAGAGGCT . 79.0 8.0 105.0 0.0 . 1807 . . Atlas-SNP PLEKHH2 130271 hgsc.bcm.edu hg19 2 43924355 43924355 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 PLEKHH2,colon,carcinoma,0,1 PLEKHH2 NM_172069 exon7 c.C548T p.S183L AGCTTTCGGAAGG . 102.0 8.0 103.0 0.0 . 156 . . Atlas-SNP ADD2 119 hgsc.bcm.edu hg19 2 70910836 70910836 + Missense_Mutation SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ADD2 NM_001185055 exon9 c.C1060T p.R354W GGGGCCGGTGCTT . 249.0 63.0 227.0 0.0 . 261 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71795093 71795093 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . DYSF NM_001130982 exon26 c.A2620T p.K874X ATGGAGAAGGTGC . 167.0 35.0 125.0 0.0 . 536 . . Atlas-SNP CYP26B1 56603 hgsc.bcm.edu hg19 2 72371128 72371128 + Missense_Mutation SNP T T C rs200324765 by1000genomes;alternate_allele TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CYP26B1 NM_019885 exon2 c.A419G p.N140S CGCTTGTTGCGGT . 98.0 4.0 74.0 0.0 . 73 . T|1.000;A|0.000 Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613036 73613036 + Missense_Mutation SNP G G C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ALMS1 NM_015120 exon1 c.G40C p.E14Q CTGGAGGAGGAGG . 289.0 27.0 150.0 0.0 . 384 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613037 73613037 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ALMS1 NM_015120 exon1 c.A41T p.E14V TGGAGGAGGAGGA . 292.0 30.0 149.0 0.0 . 384 . . Atlas-SNP SNRNP200 23020 hgsc.bcm.edu hg19 2 96949333 96949333 + Missense_Mutation SNP T T G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SNRNP200 NM_014014 exon33 c.A4703C p.Q1568P CGGGTCTGCTTGC . 84.0 27.0 71.0 0.0 . 195 . . Atlas-SNP FER1L5 90342 hgsc.bcm.edu hg19 2 97368053 97368053 + Nonsense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . FER1L5 NM_001113382 exon46 c.C5278T p.R1760X GAGCTGCGATGCA . 335.0 84.0 199.0 0.0 . 113 . . Atlas-SNP MARCO 8685 hgsc.bcm.edu hg19 2 119739022 119739022 + Silent SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . MARCO NM_006770 exon9 c.G804T p.G268G TGCAGGGGTCATG . 184.0 38.0 133.0 0.0 . 120 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179438250 179438250 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TTN NM_001267550 exon326 c.T72609A p.Y24203X CACTCCATATTTA . 148.0 32.0 115.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179502130 179502130 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TTN NM_001267550 exon224 c.G40893T p.K13631N CTCTTCCTTAGGT . 78.0 11.0 59.0 0.0 . 18412 . . Atlas-SNP NIF3L1 60491 hgsc.bcm.edu hg19 2 201761875 201761875 + Missense_Mutation SNP G G C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 NIF3L1_ENST00000409020,colon,carcinoma,0,2 NIF3L1 NM_001136039 exon5 c.G803C p.R268P TTGATCGAATAAA . 165.0 46.0 113.0 0.0 . 51 . . Atlas-SNP LANCL1 10314 hgsc.bcm.edu hg19 2 211300146 211300146 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . LANCL1 NM_001136574 exon9 c.G1088A p.C363Y GTTCTGCATCCAT . 159.0 42.0 119.0 0.0 . 23 . . Atlas-SNP TRANK1 9881 hgsc.bcm.edu hg19 3 36898772 36898772 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TRANK1 NM_014831 exon12 c.A2309T p.Q770L TCATCCTGATCAT . 97.0 15.0 77.0 0.0 . 398 . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111962868 111962868 + Missense_Mutation SNP A A C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . NM_183061 exon11 c.T1253G p.I418S GGCAAAATAAATC . 346.0 100.0 274.0 0.0 . . . . Atlas-SNP PIK3R4 30849 hgsc.bcm.edu hg19 3 130424491 130424491 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PIK3R4 NM_014602 exon12 c.A2846T p.Q949L TTTTGCTGGATGA . 171.0 67.0 140.0 0.0 . 145 . . Atlas-SNP MBNL1 4154 hgsc.bcm.edu hg19 3 152132806 152132806 + Missense_Mutation SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 MBNL1_ENST00000282488,colon,carcinoma,0,2 MBNL1 NM_207292 exon3 c.G251A p.R84H ATGGACGCAATAA . 195.0 70.0 142.0 0.0 . 100 . . Atlas-SNP ATP13A5 344905 hgsc.bcm.edu hg19 3 193081052 193081052 + Missense_Mutation SNP G G C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ATP13A5 NM_198505 exon3 c.C357G p.N119K GGCTTGGTTTATG . 146.0 43.0 117.0 0.0 . 171 . . Atlas-SNP FAM157A 728262 hgsc.bcm.edu hg19 3 197880167 197880167 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . FAM157A NM_001145248 exon2 c.G246A p.Q82Q GCAGCAGCAGCAA . 592.0 29.0 467.0 0.0 . 4 . . Atlas-SNP PROM1 8842 hgsc.bcm.edu hg19 4 16025980 16025980 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PROM1 NM_006017 exon6 c.A632T p.Q211L TTGATTTGCTGAA . 158.0 62.0 124.0 0.0 . 91 . . Atlas-SNP SLC34A2 10568 hgsc.bcm.edu hg19 4 25667799 25667799 + Silent SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SLC34A2 NM_006424 exon5 c.T429A p.P143P CAACCCTTTGTTG . 73.0 14.0 51.0 0.0 . 93 . . Atlas-SNP SEL1L3 23231 hgsc.bcm.edu hg19 4 25819867 25819867 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SEL1L3 NM_015187 exon9 c.G1457A p.R486H TACCTGCGCTGGA . 154.0 37.0 128.0 0.0 . 62 . . Atlas-SNP CWH43 80157 hgsc.bcm.edu hg19 4 48996766 48996766 + Silent SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CWH43 NM_025087 exon5 c.A642G p.G214G TTTTGGAGAAGTC . 222.0 50.0 150.0 0.0 . 101 . . Atlas-SNP RUFY3 22902 hgsc.bcm.edu hg19 4 71655272 71655272 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . RUFY3 NM_001130709 exon12 c.A1480T p.N494Y AAGACTAATCAGA . 253.0 51.0 216.0 0.0 . 61 . . Atlas-SNP COL25A1 84570 hgsc.bcm.edu hg19 4 109765684 109765684 + Silent SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . COL25A1 NM_198721 exon29 c.T1620A p.P540P GGGGCCAGGTGGG . 154.0 27.0 134.0 0.0 . 178 . . Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114158756 114158756 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ANK2 NM_001148 exon7 c.T671C p.M224T TTCAGATGATGGT . 98.0 22.0 99.0 0.0 . 576 . . Atlas-SNP FSTL5 56884 hgsc.bcm.edu hg19 4 162680644 162680644 + Missense_Mutation SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . FSTL5 NM_020116 exon6 c.T646C p.C216R AAGTACAATCAAA . 493.0 104.0 493.0 0.0 . 207 . . Atlas-SNP CLCN3 1182 hgsc.bcm.edu hg19 4 170613454 170613454 + Missense_Mutation SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CLCN3 NM_001243372 exon7 c.G919A p.E307K ACAAACGAAGCTA . 188.0 46.0 236.0 0.0 . 85 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7520950 7520950 + Missense_Mutation SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ADCY2 NM_020546 exon3 c.A508G p.T170A TCCCACACCATCG . 113.0 11.0 75.0 0.0 . 337 . . Atlas-SNP FAM134B 54463 hgsc.bcm.edu hg19 5 16617067 16617067 + Missense_Mutation SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . FAM134B NM_001034850 exon1 c.C14A p.A5E GGAGGCGCCGGGC . 295.0 77.0 176.0 0.0 . 72 . . Atlas-SNP ITGA2 3673 hgsc.bcm.edu hg19 5 52371063 52371063 + Silent SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ITGA2 NM_002203 exon23 c.A2754G p.E918E CCAAGAAGAAAAC . 204.0 43.0 150.0 0.0 . 211 . . Atlas-SNP MAST4 375449 hgsc.bcm.edu hg19 5 66391425 66391425 + Missense_Mutation SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . MAST4 NM_001164664 exon7 c.G834T p.R278S CAATAGGACTGAT . 124.0 37.0 93.0 0.0 . 218 . . Atlas-SNP NAIP 4671 hgsc.bcm.edu hg19 5 70308629 70308629 + Silent SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . NAIP NM_004536 exon4 c.A114T p.L38L TTCTTCTAGTTCC . 173.0 29.0 148.0 0.0 . 38 . . Atlas-SNP SPATA9 83890 hgsc.bcm.edu hg19 5 94994511 94994511 + Missense_Mutation SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SPATA9 NM_031952 exon5 c.C581T p.S194F GGCTCAGAAAAGG . 112.0 37.0 63.0 0.0 . 17 . . Atlas-SNP ADAMTS19 171019 hgsc.bcm.edu hg19 5 128887588 128887588 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ADAMTS19 NM_133638 exon7 c.T1342C p.C448R GAACCATGTGATA . 97.0 48.0 114.0 0.0 . 216 . . Atlas-SNP CDC23 8697 hgsc.bcm.edu hg19 5 137527198 137527198 + Silent SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CDC23 NM_004661 exon13 c.A1389G p.G463G CACATCTCCCACG . 137.0 67.0 116.0 0.0 . 46 . . Atlas-SNP PCDHB8 56128 hgsc.bcm.edu hg19 5 140559603 140559603 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PCDHB8 NM_019120 exon1 c.T1988A p.L663Q TGCTCCTGGTGGA . 77.0 39.0 72.0 0.0 . 199 . . Atlas-SNP PCDHGA12 26025 hgsc.bcm.edu hg19 5 140810730 140810730 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PCDHGA12 NM_032094 exon1 c.A404T p.E135V TTCGTGAAAGTGA . 220.0 121.0 148.0 0.0 . 271 . . Atlas-SNP SLC26A2 1836 hgsc.bcm.edu hg19 5 149360924 149360924 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SLC26A2 NM_000112 exon3 c.A1768T p.I590L TACTACATAAACA . 91.0 48.0 64.0 0.0 . 48 . . Atlas-SNP CNOT8 9337 hgsc.bcm.edu hg19 5 154242880 154242880 + Missense_Mutation SNP A A C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CNOT8 NM_004779 exon2 c.A42C p.E14D CTGTGAAGTGTGG . 189.0 10.0 137.0 0.0 . 20 . . Atlas-SNP SGCD 6444 hgsc.bcm.edu hg19 5 156184773 156184773 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SGCD NM_172244 exon8 c.C757A p.P253T ACCCTTCCCATAA . 442.0 44.0 366.0 0.0 . 52 . . Atlas-SNP SOX30 11063 hgsc.bcm.edu hg19 5 157065283 157065283 + Missense_Mutation SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SOX30 NM_178424 exon4 c.T1835C p.F612S TGATGAAAAGAGA . 331.0 42.0 209.0 0.0 . 67 . . Atlas-SNP ZNF391 346157 hgsc.bcm.edu hg19 6 27368626 27368626 + Silent SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ZNF391 NM_001076781 exon3 c.C477T p.H159H AACTCACACTGGA . 206.0 82.0 164.0 0.0 . 90 . . Atlas-SNP RPP21 79897 hgsc.bcm.edu hg19 6 30314488 30314488 + Splice_Site SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . RPP21 NM_001199121 exon5 c.375-2A>T . TTACTCAGATTCC . 131.0 51.0 106.0 0.0 . 11 . . Atlas-SNP NOTCH4 4855 hgsc.bcm.edu hg19 6 32180406 32180406 + Splice_Site SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . NOTCH4 NM_004557 exon18 c.2527-2A>T . AGAGTCTGAGGGG . 128.0 20.0 112.0 0.0 . 201 . . Atlas-SNP HLA-DQB1 3119 hgsc.bcm.edu hg19 6 32632742 32632742 + Missense_Mutation SNP C C T rs281862072 TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . HLA-DQB1 NM_002123 exon2 c.G212A p.R71H TCGAAGCGCGCGT . 69.0 30.0 61.0 0.0 . 15 . . Atlas-SNP C6orf141 135398 hgsc.bcm.edu hg19 6 49518524 49518524 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . C6orf141 NM_001145652 exon1 c.A19T p.R7W TTTGCCAGGATGG . 275.0 64.0 196.0 0.0 . 7 . . Atlas-SNP GJB7 375519 hgsc.bcm.edu hg19 6 87994409 87994409 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . GJB7 NM_198568 exon3 c.C222T p.V74V AAGTCTGACTTGG . 204.0 56.0 144.0 0.0 . 28 . . Atlas-SNP ROS1 6098 hgsc.bcm.edu hg19 6 117609803 117609803 + Missense_Mutation SNP G G C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ROS1 NM_002944 exon43 c.C6896G p.S2299C CCACAAGATTCAG . 174.0 70.0 110.0 0.0 . 728 . . Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157505501 157505501 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ARID1B NM_020732 exon13 c.A3482T p.E1161V GGGAGGAGCCCCC . 252.0 48.0 187.0 0.0 . 320 . . Atlas-SNP FRMD1 79981 hgsc.bcm.edu hg19 6 168465694 168465694 + Missense_Mutation SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . FRMD1 NM_024919 exon5 c.C505T p.R169C GCACGCGCTCCTT . 54.0 7.0 30.0 0.0 . 52 . . Atlas-SNP TBP 6908 hgsc.bcm.edu hg19 6 170871004 170871004 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TBP NM_003194 exon3 c.G180A p.Q60Q GCAGCAGCAACAA . 93.0 7.0 66.0 0.0 . 58 . . Atlas-SNP AMZ1 155185 hgsc.bcm.edu hg19 7 2748314 2748314 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . AMZ1 NM_133463 exon4 c.T565A p.W189R GAGGCCTGGAGCT . 43.0 16.0 37.0 0.0 . 41 . . Atlas-SNP GNA12 2768 hgsc.bcm.edu hg19 7 2834735 2834735 + Missense_Mutation SNP G G C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . GNA12 NM_007353 exon2 c.C352G p.P118A GCCAAGGAATGCC . 164.0 63.0 85.0 0.0 . 35 . . Atlas-SNP CARD11 84433 hgsc.bcm.edu hg19 7 2946324 2946324 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CARD11 NM_032415 exon25 c.A3413T p.K1138M CCGATCTTGTCCT . 188.0 63.0 98.0 0.0 . 339 . . Atlas-SNP TWIST1 7291 hgsc.bcm.edu hg19 7 19156809 19156809 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TWIST1 NM_000474 exon1 c.G136A p.A46T CGCCCGCGCTGCG . 234.0 38.0 121.0 0.0 . 18 . . Atlas-SNP BMPER 168667 hgsc.bcm.edu hg19 7 34118743 34118743 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 BMPER,NS,carcinoma,0,1 BMPER NM_133468 exon13 c.G1353A p.A451A CCGCGCGCCACAC . 221.0 87.0 139.0 1.0 . 131 . . Atlas-SNP POU6F2 11281 hgsc.bcm.edu hg19 7 39379608 39379608 + Silent SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . POU6F2 NM_007252 exon6 c.T879A p.P293P CAATCCTCTACAG . 61.0 25.0 35.0 0.0 . 117 . . Atlas-SNP ELN 2006 hgsc.bcm.edu hg19 7 73442595 73442595 + Silent SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ELN NM_001081753 exon1 c.T78A p.P26P TCGGCCTGGAGGT . 25.0 8.0 34.0 0.0 . 81 . . Atlas-SNP HGF 3082 hgsc.bcm.edu hg19 7 81355282 81355282 + Missense_Mutation SNP C C G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . HGF NM_000601 exon9 c.G1092C p.W364C AAAACACCAGGGT . 167.0 16.0 163.0 0.0 . 171 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82580060 82580060 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PCLO NM_014510 exon6 c.A9844T p.R3282W CCTGCCTCATCAT . 65.0 10.0 62.0 0.0 . 1506 . . Atlas-SNP SEMA3E 9723 hgsc.bcm.edu hg19 7 82997259 82997259 + Silent SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SEMA3E NM_012431 exon17 c.A1971G p.V657V ATGCTCTACTGTC . 94.0 20.0 101.0 0.0 . 125 . . Atlas-SNP ZNF394 84124 hgsc.bcm.edu hg19 7 99096398 99096398 + Missense_Mutation SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ZNF394 NM_032164 exon2 c.C524T p.A175V CTCCGTGCTGGGT . 63.0 16.0 66.0 0.0 . 48 . . Atlas-SNP PODXL 5420 hgsc.bcm.edu hg19 7 131241035 131241035 + Silent SNP C C G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PODXL NM_001018111 exon1 c.G84C p.P28P GGGCGACGGCGAC . 74.0 6.0 52.0 0.0 . 53 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 131872243 131872243 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PLXNA4 NM_020911 exon15 c.T2980A p.C994S AGAGACAGGGCTG . 69.0 14.0 63.0 0.0 . 873 . . Atlas-SNP PDIA4 9601 hgsc.bcm.edu hg19 7 148709035 148709035 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PDIA4 NM_004911 exon6 c.G882T p.K294N GACCTGCTTCAGG . 73.0 5.0 63.0 0.0 . 57 . . Atlas-SNP NOS3 4846 hgsc.bcm.edu hg19 7 150698381 150698381 + Missense_Mutation SNP G G T rs145811781 TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . NOS3 NM_001160111 exon10 c.G1296T p.E432D CCTGGAGAATGAG . 49.0 12.0 46.0 0.0 . 131 . G|1.000;T|0.000 Atlas-SNP INSIG1 3638 hgsc.bcm.edu hg19 7 155094075 155094075 + Missense_Mutation SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . INSIG1 NM_005542 exon4 c.G652A p.A218T ACCATAGCTTTTC . 104.0 37.0 106.0 0.0 . 20 . . Atlas-SNP PIWIL2 55124 hgsc.bcm.edu hg19 8 22137035 22137035 + Missense_Mutation SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PIWIL2 NM_001135721 exon2 c.G136A p.G46S CCTGCAGGCAGAG . 97.0 19.0 99.0 0.0 . 100 . . Atlas-SNP KCNB2 9312 hgsc.bcm.edu hg19 8 73849796 73849796 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KCNB2 NM_004770 exon3 c.C2206T p.P736S GCCAGGCCACTGC . 225.0 17.0 106.0 0.0 . 228 . . Atlas-SNP SLC10A5 347051 hgsc.bcm.edu hg19 8 82606852 82606852 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SLC10A5 NM_001010893 exon1 c.A356T p.K119M ACATTCTTGATTT . 234.0 32.0 103.0 0.0 . 35 . . Atlas-SNP GRHL2 79977 hgsc.bcm.edu hg19 8 102570707 102570707 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . GRHL2 NM_024915 exon4 c.A345T p.Q115H AGTGCAAGTCCTA . 352.0 41.0 146.0 0.0 . 68 . . Atlas-SNP ZFPM2 23414 hgsc.bcm.edu hg19 8 106331209 106331209 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ZFPM2 NM_012082 exon1 c.C40T p.R14W ATCAAACGTAAGT . 673.0 148.0 291.0 0.0 . 219 . . Atlas-SNP TRPS1 7227 hgsc.bcm.edu hg19 8 116616720 116616720 + Silent SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TRPS1 NM_014112 exon4 c.T1476C p.S492S AATGACAGAGCCC . 180.0 17.0 89.0 0.0 . 516 . . Atlas-SNP TRPS1 7227 hgsc.bcm.edu hg19 8 116631492 116631492 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TRPS1 NM_014112 exon3 c.T833A p.L278X AGGGCCAAGATTT . 299.0 27.0 191.0 0.0 . 516 . . Atlas-SNP KIFC2 90990 hgsc.bcm.edu hg19 8 145698549 145698549 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KIFC2 NM_145754 exon17 c.T2233C p.S745P AGACAGTCTGCTC . 193.0 15.0 85.0 0.0 . 53 . . Atlas-SNP PSIP1 11168 hgsc.bcm.edu hg19 9 15472658 15472658 + Missense_Mutation SNP T T G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PSIP1 NM_021144 exon9 c.A949C p.K317Q CTTGCTTGCGTTT . 84.0 46.0 87.0 0.0 . 93 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79320430 79320430 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PRUNE2 NM_015225 exon8 c.A6760T p.S2254C AAAAGCTGTCTGA . 141.0 35.0 152.0 0.0 . 331 . . Atlas-SNP TLE4 7091 hgsc.bcm.edu hg19 9 82324551 82324551 + Missense_Mutation SNP C C G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TLE4 NM_007005 exon14 c.C1277G p.P426R TTGATCCACACCA . 78.0 21.0 75.0 0.0 . 187 . . Atlas-SNP SPATA31C1 441452 hgsc.bcm.edu hg19 9 90535925 90535925 + Missense_Mutation SNP C C G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . NM_001145124 exon4 c.C1103G p.P368R CTTTCCCAGTCCT . 143.0 41.0 126.0 0.0 . . . . Atlas-SNP SLC44A1 23446 hgsc.bcm.edu hg19 9 108145486 108145486 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SLC44A1 NM_080546 exon14 c.T1715A p.L572Q TGCCTCTGATCAT . 75.0 11.0 63.0 0.0 . 61 . . Atlas-SNP DAB2IP 153090 hgsc.bcm.edu hg19 9 124535752 124535752 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . DAB2IP NM_032552 exon12 c.A2861T p.K954M AACTGAAGCCACG . 123.0 26.0 135.0 0.0 . 150 . . Atlas-SNP SSNA1 8636 hgsc.bcm.edu hg19 9 140083520 140083520 + Missense_Mutation SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SSNA1 NM_003731 exon2 c.A55G p.I19V CCAGGCATAGAGG . 100.0 15.0 89.0 0.0 . 11 . . Atlas-SNP GDI2 2665 hgsc.bcm.edu hg19 10 5842576 5842576 + Silent SNP T T G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . GDI2 NM_001115156 exon2 c.A138C p.I46I TGGTGTTATAGAT . 104.0 34.0 84.0 0.0 . 26 . . Atlas-SNP ITIH5 80760 hgsc.bcm.edu hg19 10 7618817 7618817 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ITIH5 NM_001001851 exon10 c.T1577A p.L526Q ACGTGCAGGTGAT . 198.0 51.0 139.0 0.0 . 343 . . Atlas-SNP SKIDA1 387640 hgsc.bcm.edu hg19 10 21805483 21805483 + Silent SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . NM_207371 exon4 c.G1269A p.E423E CTCTTCCTCCTCC . 89.0 5.0 59.0 0.0 . . . . Atlas-SNP BMS1 9790 hgsc.bcm.edu hg19 10 43312077 43312077 + Missense_Mutation SNP A A C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . BMS1 NM_014753 exon14 c.A2360C p.E787A ACTTGGAAACAGG . 16.0 5.0 16.0 0.0 . 132 . . Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 49939214 49939214 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . WDFY4 NM_020945 exon9 c.A1189T p.S397C AAAGCCAGTGACT . 107.0 23.0 65.0 0.0 . 205 . . Atlas-SNP ZWINT 11130 hgsc.bcm.edu hg19 10 58119616 58119616 + Splice_Site SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ZWINT NM_032997 exon5 c.257-2A>T . CTGTCCTGAGATG . 85.0 23.0 53.0 0.0 . 39 . . Atlas-SNP IPMK 253430 hgsc.bcm.edu hg19 10 59956280 59956280 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . IPMK NM_152230 exon6 c.G808A p.D270N TTCTGTCATTCAA . 231.0 20.0 105.0 0.0 . 45 . . Atlas-SNP DDX21 9188 hgsc.bcm.edu hg19 10 70719759 70719759 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 DDX21,lower_third,carcinoma,0,1 DDX21 NM_004728 exon2 c.G285A p.L95L AAGTTTGAGAAAG . 540.0 229.0 505.0 1.0 . 57 . . Atlas-SNP NLRP6 171389 hgsc.bcm.edu hg19 11 279503 279503 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . NLRP6 NM_138329 exon2 c.C206A p.A69D AGCTGGCCCAGTT . 91.0 32.0 104.0 0.0 . 4 . . Atlas-SNP KRTAP5-3 387266 hgsc.bcm.edu hg19 11 1629046 1629046 + Silent SNP G G A rs12808755 TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KRTAP5-3 NM_001012708 exon1 c.C570T p.C190C GGGTTTGCAGCAG . 57.0 6.0 47.0 0.0 . 33 . . Atlas-SNP OR51G1 79324 hgsc.bcm.edu hg19 11 4945292 4945292 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . OR51G1 NM_001005237 exon1 c.A278G p.E93G CCAATCTCTCTGG . 168.0 30.0 133.0 0.0 . 74 . . Atlas-SNP OR8I2 120586 hgsc.bcm.edu hg19 11 55861433 55861433 + Missense_Mutation SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . OR8I2 NM_001003750 exon1 c.A650G p.Y217C TCACTTATATCAT . 70.0 26.0 81.0 0.0 . 119 . . Atlas-SNP ATG16L2 89849 hgsc.bcm.edu hg19 11 72525573 72525573 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ATG16L2 NM_033388 exon1 c.C83A p.T28K ACCGTACGCAAAA . 141.0 25.0 131.0 0.0 . 26 . . Atlas-SNP FAM168A 23201 hgsc.bcm.edu hg19 11 73141779 73141779 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . FAM168A NM_015159 exon3 c.A107T p.Y36F GGATTGTAGGCAG . 114.0 19.0 78.0 0.0 . 18 . . Atlas-SNP TENM4 26011 hgsc.bcm.edu hg19 11 78369171 78369171 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . NM_001098816 exon34 c.T8242A p.Y2748N CTGGGTACTGCTC . 90.0 35.0 92.0 0.0 . . . . Atlas-SNP TENM4 26011 hgsc.bcm.edu hg19 11 78387204 78387204 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . NM_001098816 exon30 c.G5489A p.R1830Q CGCAGCCGGCGCC . 54.0 9.0 47.0 0.0 . . . . Atlas-SNP TMEM135 65084 hgsc.bcm.edu hg19 11 86802424 86802424 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TMEM135 NM_022918 exon4 c.A383T p.Y128F CAATTTATATGGC . 134.0 26.0 93.0 0.0 . 40 . . Atlas-SNP TTC12 54970 hgsc.bcm.edu hg19 11 113209515 113209515 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TTC12 NM_017868 exon9 c.A596T p.K199M ATAAGAAGATCTT . 139.0 62.0 122.0 0.0 . 66 . . Atlas-SNP VWA5A 4013 hgsc.bcm.edu hg19 11 124013257 124013257 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . VWA5A NM_014622 exon16 c.T2132C p.I711T AAGAAATAATGGC . 101.0 35.0 93.0 0.0 . 102 . . Atlas-SNP IPO8 10526 hgsc.bcm.edu hg19 12 30837345 30837345 + Silent SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . IPO8 NM_006390 exon3 c.A213T p.R71R AGGTTCTCGATCT . 162.0 51.0 107.0 0.0 . 105 . . Atlas-SNP CNTN1 1272 hgsc.bcm.edu hg19 12 41410583 41410583 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 CNTN1,colon,carcinoma,0,1 CNTN1 NM_001843 exon19 c.C2284T p.P762S ACTAATCCTGATA . 203.0 67.0 130.0 0.0 . 207 . . Atlas-SNP KRT74 121391 hgsc.bcm.edu hg19 12 52962149 52962149 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KRT74 NM_175053 exon7 c.G1159A p.A387T CGTCAGCGATGGC . 113.0 11.0 84.0 0.0 . 67 . . Atlas-SNP KRT3 3850 hgsc.bcm.edu hg19 12 53189455 53189455 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KRT3 NM_057088 exon1 c.C372T p.G124G TCCAAAGCCACCA . 151.0 45.0 113.0 0.0 . 65 . . Atlas-SNP HOXC12 3228 hgsc.bcm.edu hg19 12 54348808 54348808 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . HOXC12 NM_173860 exon1 c.C95A p.S32Y GCGCGTCCGGGGC . 299.0 87.0 188.0 0.0 . 19 . . Atlas-SNP ITGA5 3678 hgsc.bcm.edu hg19 12 54797997 54797997 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ITGA5 NM_002205 exon15 c.C1497T p.L499L GATGGTGAGGGAG . 138.0 31.0 106.0 0.0 . 99 . . Atlas-SNP WIF1 11197 hgsc.bcm.edu hg19 12 65460513 65460513 + Missense_Mutation SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . WIF1 NM_007191 exon6 c.T638C p.L213P GTACAAAGGGCTT . 172.0 53.0 135.0 0.0 . 96 . . Atlas-SNP KCNC2 3747 hgsc.bcm.edu hg19 12 75601469 75601469 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KCNC2 NM_139137 exon2 c.G295T p.G99C CGCGGCCGCCACC . 304.0 81.0 224.0 0.0 . 239 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 80982127 80982127 + Missense_Mutation SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PTPRQ NM_001145026 exon23 c.A3989G p.Y1330C CAGTATATGGATT . 147.0 48.0 127.0 0.0 . 119 . . Atlas-SNP ANO4 121601 hgsc.bcm.edu hg19 12 101480526 101480526 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ANO4 NM_178826 exon16 c.T1520C p.I507T CGTTAATCAGGAA . 160.0 42.0 147.0 0.0 . 183 . . Atlas-SNP MTUS2 23281 hgsc.bcm.edu hg19 13 30066851 30066851 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . MTUS2 NM_001033602 exon10 c.T3604A p.L1202M CTGTCATTGCAGG . 116.0 19.0 89.0 0.0 . 279 . . Atlas-SNP USPL1 10208 hgsc.bcm.edu hg19 13 31205172 31205172 + Silent SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . USPL1 NM_005800 exon4 c.A429G p.G143G TAATGGAGAAGTA . 148.0 14.0 117.0 0.0 . 82 . . Atlas-SNP SCEL 8796 hgsc.bcm.edu hg19 13 78163340 78163340 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SCEL NM_003843 exon10 c.C607A p.Q203K CCTAACCAGCTGA . 110.0 25.0 85.0 0.0 . 85 . . Atlas-SNP EDNRB 1910 hgsc.bcm.edu hg19 13 78472337 78472337 + Missense_Mutation SNP A A C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . EDNRB NM_001201397 exon8 c.T1597G p.X533G TCTTTCAAGATGA . 80.0 14.0 42.0 0.0 . 172 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103391517 103391517 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . NM_001146197 exon4 c.G11530T p.E3844X TACTTTCATCTTC . 148.0 66.0 142.0 0.0 . . . . Atlas-SNP C14orf119 55017 hgsc.bcm.edu hg19 14 23567275 23567275 + Silent SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . C14orf119 NM_017924 exon2 c.A408G p.T136T TGCTACAGCTGGT . 70.0 17.0 73.0 0.0 . 7 . . Atlas-SNP HECTD1 25831 hgsc.bcm.edu hg19 14 31604292 31604292 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . HECTD1 NM_015382 exon22 c.A3364G p.N1122D CTGAATTATCACG . 96.0 16.0 124.0 0.0 . 159 . . Atlas-SNP FAM179B 23116 hgsc.bcm.edu hg19 14 45465007 45465007 + Missense_Mutation SNP T T G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . FAM179B NM_015091 exon2 c.T2105G p.V702G TGCCAGTCAATGA . 93.0 15.0 106.0 0.0 . 115 . . Atlas-SNP BMP4 652 hgsc.bcm.edu hg19 14 54416923 54416923 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . BMP4 NM_130851 exon4 c.A1054T p.T352S GGTTGGTTGAGTT . 216.0 40.0 191.0 0.0 . 45 . . Atlas-SNP KCNH5 27133 hgsc.bcm.edu hg19 14 63246579 63246579 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KCNH5 NM_139318 exon10 c.A1886G p.N629S CGGACGTTCGCAC . 115.0 22.0 144.0 0.0 . 320 . . Atlas-SNP ZBTB1 22890 hgsc.bcm.edu hg19 14 64998591 64998591 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ZBTB1 NM_014950 exon3 c.G1911A p.G637G AATAGGGCCTTCT . 106.0 19.0 91.0 0.0 . 93 . . Atlas-SNP EML5 161436 hgsc.bcm.edu hg19 14 89258735 89258735 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . EML5 NM_183387 exon1 c.A113T p.Y38F ACGAAGTATACGA . 64.0 14.0 95.0 0.0 . 141 . . Atlas-SNP TDRD9 122402 hgsc.bcm.edu hg19 14 104436890 104436890 + Missense_Mutation SNP A A G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TDRD9 NM_153046 exon6 c.A778G p.T260A GAACGAACAGAAG . 120.0 15.0 110.0 0.0 . 175 . . Atlas-SNP DISP2 85455 hgsc.bcm.edu hg19 15 40660665 40660665 + Silent SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 DISP2,NS,carcinoma,0,1 DISP2 NM_033510 exon8 c.C2352A p.G784G CACTGGCGACCCT . 114.0 33.0 87.0 0.0 . 86 . . Atlas-SNP MAP1A 4130 hgsc.bcm.edu hg19 15 43819399 43819399 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . MAP1A NM_002373 exon4 c.C5728T p.R1910C GACTACCGCAAGG . 218.0 39.0 176.0 0.0 . 189 . . Atlas-SNP USP8 9101 hgsc.bcm.edu hg19 15 50751310 50751310 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . USP8 NM_001128610 exon5 c.C449T p.A150V CATTGGCTAAAGG . 551.0 130.0 378.0 0.0 . 90 . . Atlas-SNP TRPM7 54822 hgsc.bcm.edu hg19 15 50885907 50885907 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TRPM7 NM_017672 exon25 c.A3515G p.D1172G TCAAAATCATGAA . 102.0 31.0 70.0 0.0 . 145 . . Atlas-SNP UBE2Q2 92912 hgsc.bcm.edu hg19 15 76183289 76183289 + Silent SNP G G C rs142780659 bycluster;by1000genomes;alternate_allele TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 UBE2Q2,NS,carcinoma,0,1 UBE2Q2 NM_173469 exon11 c.G963C p.S321S AGAATCGGTCATC . 154.0 42.0 104.0 0.0 . 26 . G|1.000;A|0.000 Atlas-SNP WDR61 80349 hgsc.bcm.edu hg19 15 78582307 78582307 + Missense_Mutation SNP G G C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 WDR61,NS,carcinoma,0,1 WDR61 NM_025234 exon6 c.C454G p.L152V TACTAAGAATGAA . 166.0 16.0 121.0 0.0 . 26 . . Atlas-SNP NME3 4832 hgsc.bcm.edu hg19 16 1821508 1821508 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . NME3 NM_002513 exon1 c.G28A p.A10T GGTTAGCGAAGAT . 87.0 18.0 55.0 0.0 . 4 . . Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24788429 24788429 + Silent SNP A A G rs60829899 TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TNRC6A NM_014494 exon5 c.A339G p.P113P GCAGCCACAGCCG . 88.0 6.0 77.0 0.0 . 171 . . Atlas-SNP NUTF2 10204 hgsc.bcm.edu hg19 16 67902495 67902495 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . NUTF2 NM_005796 exon4 c.A263T p.Q88L TGGGCCAGCTTAA . 70.0 38.0 60.0 0.0 . 11 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577148 7577148 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 TP53_ENST00000455263,NS,carcinoma,+1,12 TP53 NM_000546 exon8 c.C790T p.L264L CCAGTAGATTACC . 71.0 33.0 85.0 0.0 . 33396 . . Atlas-SNP GUCY2D 3000 hgsc.bcm.edu hg19 17 7909980 7909980 + Silent SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . GUCY2D NM_000180 exon4 c.A1326T p.A442A ATCAGCACCCGGA . 93.0 33.0 76.0 0.0 . 82 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11701056 11701056 + Missense_Mutation SNP A A T rs145239685 alternate_allele TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . DNAH9 NM_001372 exon43 c.A8366T p.N2789I ACCACAATGAAGT . 114.0 42.0 131.0 0.0 . 695 . A|1.000;G|0.000 Atlas-SNP GIT1 28964 hgsc.bcm.edu hg19 17 27909015 27909015 + Missense_Mutation SNP G G T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . GIT1 NM_014030 exon5 c.C553A p.L185M CAAGCAGCTCGGC . 55.0 7.0 41.0 0.0 . 84 . . Atlas-SNP CPD 1362 hgsc.bcm.edu hg19 17 28778776 28778776 + Silent SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CPD NM_001304 exon14 c.T3117C p.D1039D TCCAGATGGGCGA . 141.0 53.0 135.0 0.0 . 89 . . Atlas-SNP RHOT1 55288 hgsc.bcm.edu hg19 17 30538176 30538176 + Missense_Mutation SNP C C G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . RHOT1 NM_001033568 exon20 c.C1877G p.T626R GGTGTACATTTTG . 83.0 7.0 90.0 0.0 . 69 . . Atlas-SNP KRTAP3-3 85293 hgsc.bcm.edu hg19 17 39150197 39150197 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KRTAP3-3 NM_033185 exon1 c.T153A p.C51X TGGGGGACAGTTG . 250.0 15.0 242.0 0.0 . 11 . . Atlas-SNP DHX8 1659 hgsc.bcm.edu hg19 17 41590838 41590838 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . DHX8 NM_004941 exon17 c.A2611T p.I871F ACAGGGATTGACC . 161.0 72.0 151.0 0.0 . 98 . . Atlas-SNP CACNA1G 8913 hgsc.bcm.edu hg19 17 48655580 48655580 + Silent SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CACNA1G NM_001256360 exon9 c.C1956T p.S652S CTCCAGCCCTTGC . 121.0 10.0 127.0 0.0 . 659 . . Atlas-SNP KCNH6 81033 hgsc.bcm.edu hg19 17 61623190 61623190 + Missense_Mutation SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . KCNH6 NM_030779 exon14 c.G2912A p.G971D ACCTTGGCTCTGT . 68.0 26.0 73.0 0.0 . 122 . . Atlas-SNP DDX42 11325 hgsc.bcm.edu hg19 17 61895571 61895571 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . DDX42 NM_203499 exon18 c.C2630T p.A877V GGGGTGCAAATGA . 78.0 26.0 61.0 0.0 . 86 . . Atlas-SNP CD79B 974 hgsc.bcm.edu hg19 17 62007563 62007563 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CD79B NM_001039933 exon3 c.A304T p.N102Y ATTCGTTCTGGGA . 85.0 7.0 73.0 0.0 . 38 . . Atlas-SNP SMURF2 64750 hgsc.bcm.edu hg19 17 62553767 62553767 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SMURF2 NM_022739 exon13 c.A1390G p.I464V TATAAATATCATC . 357.0 35.0 377.0 0.0 . 63 . . Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76445590 76445590 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . DNAH17 NM_173628 exon69 c.T11117A p.L3706Q TCCGTCAGGTTGA . 131.0 54.0 114.0 0.0 . 347 . . Atlas-SNP SLC39A6 25800 hgsc.bcm.edu hg19 18 33689641 33689641 + Missense_Mutation SNP T T A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SLC39A6 NM_012319 exon10 c.A2183T p.Q728L GCATTCTGTAAAA . 378.0 196.0 339.0 0.0 . 81 . . Atlas-SNP NEDD4L 23327 hgsc.bcm.edu hg19 18 56056334 56056334 + Silent SNP C C T rs375065890 TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . NEDD4L NM_001144967 exon28 c.C2565T p.L855L CGGCCTCGGTGAT . 108.0 7.0 123.0 0.0 . 126 . . Atlas-SNP SERPINB4 6318 hgsc.bcm.edu hg19 18 61310753 61310753 + Missense_Mutation SNP C C G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . SERPINB4 NM_002974 exon2 c.G59C p.R20T GATTTTCTGAACT . 190.0 85.0 220.0 0.0 . 89 . . Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11143993 11143993 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 SMARCA4_ENST00000358026,NS,carcinoma,0,3 SMARCA4 NM_003072 exon26 c.C3574T p.R1192C GCCCACCGCATCG . 151.0 69.0 160.0 0.0 . 502 . . Atlas-SNP CLIP3 25999 hgsc.bcm.edu hg19 19 36510204 36510204 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . CLIP3 NM_001199570 exon7 c.G923A p.G308D AGTGTGCCCGTCT . 40.0 25.0 38.0 0.0 . 53 . . Atlas-SNP WDR62 284403 hgsc.bcm.edu hg19 19 36545927 36545927 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . WDR62 NM_173636 exon1 c.G54A p.L18L GAAGCTGCCCTCT . 165.0 108.0 138.0 0.0 . 102 . . Atlas-SNP LMTK3 114783 hgsc.bcm.edu hg19 19 49001083 49001083 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . LMTK3 NM_001080434 exon12 c.C3330T p.N1110N CGTCCCGTTCTTG . 31.0 15.0 27.0 0.0 . 125 . . Atlas-SNP ZNF628 89887 hgsc.bcm.edu hg19 19 55995139 55995139 + Missense_Mutation SNP A A C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ZNF628 NM_033113 exon3 c.A2579C p.Q860P CAGCACAGGAGGT . 140.0 72.0 125.0 0.0 . 75 . . Atlas-SNP TGM6 343641 hgsc.bcm.edu hg19 20 2413197 2413197 + Missense_Mutation SNP A A C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TGM6 NM_198994 exon13 c.A2029C p.S677R TCCAAAAGTGGCC . 151.0 34.0 100.0 0.0 . 126 . . Atlas-SNP PLTP 5360 hgsc.bcm.edu hg19 20 44533489 44533489 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . PLTP NM_006227 exon10 c.G892A p.D298N CCAGGTCGTGGGG . 292.0 109.0 192.0 0.0 . 49 . . Atlas-SNP RBBP8NL 140893 hgsc.bcm.edu hg19 20 60989520 60989520 + Missense_Mutation SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . NM_080833 exon10 c.T887A p.L296Q AGGGACAGGGGGC . 128.0 43.0 88.0 0.0 . . . . Atlas-SNP ITGB2 3689 hgsc.bcm.edu hg19 21 46321441 46321441 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ITGB2 NM_000211 exon6 c.G707T p.G236V TCCAGCCCACCCT . 79.0 37.0 72.0 0.0 . 107 . . Atlas-SNP LSS 4047 hgsc.bcm.edu hg19 21 47614405 47614405 + Missense_Mutation SNP C C T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . LSS NM_001001438 exon20 c.G1988A p.R663Q CCCCACCGAACGG . 67.0 29.0 51.0 0.0 . 50 . . Atlas-SNP MICAL3 57553 hgsc.bcm.edu hg19 22 18347692 18347692 + Missense_Mutation SNP C C T rs199950640 bycluster TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 MICA3_HUMAN,NS,carcinoma,0,3 MICAL3 NM_001136004 exon23 c.G2950A p.V984M TGGCCACGGCGTT . 97.0 14.0 97.0 0.0 . 53 . . Atlas-SNP TXN2 25828 hgsc.bcm.edu hg19 22 36863964 36863964 + Missense_Mutation SNP C C G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . TXN2 NM_012473 exon4 c.G388C p.V130L CTGACACCTGGGT . 77.0 54.0 65.0 0.0 . 15 . . Atlas-SNP MICALL1 85377 hgsc.bcm.edu hg19 22 38328562 38328562 + Silent SNP C C G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . MICALL1 NM_033386 exon11 c.C2019G p.V673V GCAGGTCCAGGCT . 114.0 56.0 101.0 0.0 . 53 . . Atlas-SNP MOSPD2 158747 hgsc.bcm.edu hg19 X 14915270 14915270 + Silent SNP A A T novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . MOSPD2 NM_152581 exon5 c.A387T p.I129I GCTCATAGCATTC . 485.0 227.0 461.0 0.0 . 46 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32716095 32716095 + Missense_Mutation SNP C C A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . DMD NM_004006 exon9 c.G852T p.Q284H ATATCCCTGTGCT . 171.0 46.0 173.0 0.0 . 2127 . . Atlas-SNP DCAF12L1 139170 hgsc.bcm.edu hg19 X 125686535 125686535 + Silent SNP G G A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . DCAF12L1 NM_178470 exon1 c.C57T p.D19D CTCGGCGTCCGCC . 113.0 46.0 139.0 0.0 . 135 . . Atlas-SNP ELF4 2000 hgsc.bcm.edu hg19 X 129205014 129205014 + Splice_Site SNP C C G novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ELF4 NM_001421 exon8 c.809+1G>C . CTCCTACCTTAGT . 77.0 13.0 65.0 0.0 . 67 . . Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 7210 7210 + Missense_Mutation SNP T T C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . . ENST00000361624 exon1 c.T1307C p.M436T CCGGAATGCCCCG . 70.0 63.0 23.0 0.0 . . . . Atlas-SNP BBS4 585 hgsc.bcm.edu hg19 15 73020331 73020332 + Frame_Shift_Ins INS - - A novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . BBS4 NM_033028 exon9 c.638_639insA p.L213fs . . 81.0 22.0 72.0 0.0 . 34 . . Atlas-INDEL TP53 7157 hgsc.bcm.edu hg19 17 7577149 7577150 + Frame_Shift_Ins INS - - C novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 TP53,colon,carcinoma,-1,1 TP53 NM_001126112 exon8 c.789_790insG p.N263fs . . 71.0 33.0 83.0 0.0 . 33396 . . Atlas-INDEL ETV6 2120 hgsc.bcm.edu hg19 12 12006418 12006418 + Frame_Shift_Del DEL T T - novel TCGA-DD-AACZ-01A-11D-A40R-10 TCGA-DD-AACZ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3f597b1b-500d-482d-ade1-61d7dffef94e 437561b3-e574-4171-b2ca-dafac20f5230 . ETV6 NM_001987 exon4 c.385delC p.L129fs . . 129.0 31.0 92.0 0.0 . 91 . . Atlas-INDEL