Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SCMH1 22955 hgsc.bcm.edu hg19 1 41608748 41608748 + Missense_Mutation SNP T T A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SCMH1 NM_001172219 exon6 c.A214T p.M72L ATTTCATACTGAT . 56.0 20.0 65.0 0.0 . 120 . . Atlas-SNP JAK1 3716 hgsc.bcm.edu hg19 1 65311203 65311203 + Missense_Mutation SNP C C A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 JAK1,colon,carcinoma,-1,6 JAK1 NM_002227 exon15 c.G2108T p.S703I AAGTAGCTCAGGG . 62.0 29.0 84.0 0.0 . 209 . . Atlas-SNP JAK1 3716 hgsc.bcm.edu hg19 1 65311219 65311219 + Silent SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . JAK1 NM_002227 exon15 c.C2092T p.L698L TGGCCAGCTGTTT . 67.0 31.0 92.0 0.0 . 209 . . Atlas-SNP WDR63 126820 hgsc.bcm.edu hg19 1 85537689 85537689 + Splice_Site SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . WDR63 NM_145172 exon2 c.64+1G>A . TAGCTGGTAGGAA . 210.0 80.0 285.0 1.0 . 91 . . Atlas-SNP RWDD3 25950 hgsc.bcm.edu hg19 1 95710153 95710153 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . RWDD3 NM_001128142 exon2 c.A472G p.I158V GTCAAAATTGTGG . 137.0 57.0 149.0 0.0 . 24 . . Atlas-SNP PALMD 54873 hgsc.bcm.edu hg19 1 100152744 100152744 + Silent SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 PALMD,NS,carcinoma,0,1 PALMD NM_017734 exon6 c.A513G p.K171K TAGGAAAGGTATA . 307.0 107.0 359.0 0.0 . 64 . . Atlas-SNP CELSR2 1952 hgsc.bcm.edu hg19 1 109814231 109814231 + Missense_Mutation SNP A A T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . CELSR2 NM_001408 exon28 c.A7813T p.I2605F CCCTTCATCTTCC . 91.0 43.0 104.0 0.0 . 228 . . Atlas-SNP ETV3 2117 hgsc.bcm.edu hg19 1 157103988 157103988 + Missense_Mutation SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . ETV3 NM_005240 exon4 c.A316C p.T106P CTTTTGTTTTATG . 111.0 45.0 85.0 0.0 . 50 . . Atlas-SNP ETV3 2117 hgsc.bcm.edu hg19 1 157104005 157104005 + Missense_Mutation SNP T T C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . ETV3 NM_005240 exon4 c.A299G p.K100R ATCCTCTTGTTGT . 101.0 38.0 78.0 0.0 . 50 . . Atlas-SNP C1orf112 55732 hgsc.bcm.edu hg19 1 169819420 169819420 + Missense_Mutation SNP A A C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . C1orf112 NM_018186 exon22 c.A2178C p.E726D TCATGAAGAGATA . 101.0 42.0 64.0 0.0 . 74 . . Atlas-SNP TOR3A 64222 hgsc.bcm.edu hg19 1 179063230 179063230 + Missense_Mutation SNP A A T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . TOR3A NM_022371 exon5 c.A821T p.N274I TCAGTAATCTCAG . 133.0 48.0 104.0 0.0 . 28 . . Atlas-SNP DNAH14 127602 hgsc.bcm.edu hg19 1 225525877 225525877 + Missense_Mutation SNP A A T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . DNAH14 NM_001373 exon66 c.A10147T p.N3383Y AATTCAAATTTTA . 401.0 194.0 249.0 0.0 . 300 . . Atlas-SNP OSR1 130497 hgsc.bcm.edu hg19 2 19553489 19553489 + Silent SNP T T G rs368651434 alternate_allele TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . OSR1 NM_145260 exon2 c.A78C p.A26A GTTCACTGCCTGA . 98.0 42.0 104.0 0.0 . 29 . . Atlas-SNP DHX57 90957 hgsc.bcm.edu hg19 2 39033812 39033812 + Missense_Mutation SNP A A C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . DHX57 NM_198963 exon22 c.T3705G p.F1235L CTTCTGAAATTTT . 100.0 38.0 102.0 0.0 . 127 . . Atlas-SNP HAAO 23498 hgsc.bcm.edu hg19 2 43019665 43019665 + Silent SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . HAAO NM_012205 exon1 c.C12T p.R4R TCCCAGGCGGCGC . 69.0 27.0 91.0 0.0 . 26 . . Atlas-SNP EPAS1 2034 hgsc.bcm.edu hg19 2 46609728 46609728 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . EPAS1 NM_001430 exon15 c.A2452G p.K818E GCCCACAAGGTGT . 90.0 33.0 79.0 0.0 . 83 . . Atlas-SNP FOXN2 3344 hgsc.bcm.edu hg19 2 48602189 48602189 + Missense_Mutation SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . FOXN2 NM_002158 exon7 c.T903G p.D301E AGAAGATCACAAT . 104.0 36.0 146.0 0.0 . 39 . . Atlas-SNP NOTO 344022 hgsc.bcm.edu hg19 2 73438052 73438052 + Missense_Mutation SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . NOTO NM_001134462 exon3 c.G751A p.G251S GTGGACGGCTGAA . 63.0 6.0 94.0 0.0 . 20 . . Atlas-SNP KIF5C 3800 hgsc.bcm.edu hg19 2 149868088 149868088 + Silent SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . KIF5C NM_004522 exon25 c.G2772A p.K924K AGCCAAGCCCATC . 68.0 23.0 66.0 0.0 . 166 . . Atlas-SNP ITGA6 3655 hgsc.bcm.edu hg19 2 173338923 173338923 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . ITGA6 NM_000210 exon6 c.A916G p.I306V GAGCACATATTCG . 121.0 45.0 129.0 0.0 . 171 . . Atlas-SNP PDK1 5163 hgsc.bcm.edu hg19 2 173429803 173429803 + Splice_Site SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PDK1 NM_002610 exon5 c.691+2T>G . TAAAGGTAAATAC . 80.0 27.0 74.0 0.0 . 39 . . Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197092916 197092916 + Missense_Mutation SNP G G C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . HECW2 NM_020760 exon22 c.C3827G p.P1276R TAATATGGGTTAA . 250.0 110.0 282.0 0.0 . 239 . . Atlas-SNP SMARCAL1 50485 hgsc.bcm.edu hg19 2 217341834 217341834 + Silent SNP G G T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SMARCAL1 NM_014140 exon16 c.G2430T p.V810V ACAGGTGCTGATC . 37.0 15.0 46.0 0.0 . 93 . . Atlas-SNP SRGAP3 9901 hgsc.bcm.edu hg19 3 9102039 9102039 + Missense_Mutation SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SRGAP3 NM_014850 exon6 c.A677C p.Q226P TTGGCCTGCCTCT . 75.0 29.0 86.0 0.0 . 146 . . Atlas-SNP PPARG 5468 hgsc.bcm.edu hg19 3 12458591 12458591 + Missense_Mutation SNP A A T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PPARG NM_015869 exon6 c.A1208T p.N403I AGTTCAATGCACT . 70.0 20.0 110.0 0.0 . 49 . . Atlas-SNP PXK 54899 hgsc.bcm.edu hg19 3 58410540 58410540 + Silent SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PXK NM_017771 exon18 c.T1590G p.P530P GCCTCCTGCGAGC . 137.0 47.0 143.0 0.0 . 89 . . Atlas-SNP SEMA5B 54437 hgsc.bcm.edu hg19 3 122631890 122631890 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SEMA5B NM_001256347 exon18 c.T2687C p.L896P CTGCGCAGGAGGA . 31.0 16.0 48.0 0.0 . 303 . . Atlas-SNP EPHB1 2047 hgsc.bcm.edu hg19 3 134873108 134873108 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 EPHB1_ENST00000398015,colon,carcinoma,0,2 EPHB1 NM_004441 exon6 c.A1412G p.Y471C TCCGGTACTATGA . 70.0 27.0 89.0 0.0 . 519 . . Atlas-SNP DHX36 170506 hgsc.bcm.edu hg19 3 154032979 154032979 + Missense_Mutation SNP T T A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . DHX36 NM_020865 exon3 c.A459T p.K153N AAACATTTTTTTT . 154.0 7.0 175.0 0.0 . 98 . . Atlas-SNP SI 6476 hgsc.bcm.edu hg19 3 164776811 164776811 + Silent SNP C C T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SI NM_001041 exon12 c.G1338A p.R446R GTTTCCCCTCTCA . 124.0 8.0 123.0 0.0 . 500 . . Atlas-SNP RPL35A 6165 hgsc.bcm.edu hg19 3 197678059 197678059 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . RPL35A NM_000996 exon3 c.A41G p.Y14C CTGGCTATAAGCG . 59.0 23.0 59.0 0.0 . 9 . . Atlas-SNP GRSF1 2926 hgsc.bcm.edu hg19 4 71705447 71705447 + Missense_Mutation SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . GRSF1 NM_002092 exon1 c.A98C p.Y33S GCGGAGTAGAAGG . 6.0 6.0 2.0 0.0 . 35 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123179993 123179993 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . KIAA1109 NM_015312 exon40 c.A6757G p.I2253V TTAAAAATAAAGG . 70.0 28.0 80.0 0.0 . 424 . . Atlas-SNP RASA1 5921 hgsc.bcm.edu hg19 5 86633866 86633866 + Silent SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . RASA1 NM_002890 exon5 c.A975G p.T325T AAGAACAGATGAA . 314.0 108.0 394.0 0.0 . 213 . . Atlas-SNP RASA1 5921 hgsc.bcm.edu hg19 5 86633867 86633867 + Missense_Mutation SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 RASA1_ENST00000456692,NS,carcinoma,0,2 RASA1 NM_002890 exon5 c.G976A p.D326N AGAACAGATGAAC . 316.0 107.0 391.0 0.0 . 213 . . Atlas-SNP CHD1 1105 hgsc.bcm.edu hg19 5 98262046 98262046 + Silent SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . CHD1 NM_001270 exon1 c.A45C p.G15G TGATTCTCCACTA . 61.0 21.0 75.0 0.0 . 137 . . Atlas-SNP CDC25C 995 hgsc.bcm.edu hg19 5 137665271 137665271 + Missense_Mutation SNP A A T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . CDC25C NM_001790 exon3 c.T260A p.L87H GTGGTAAGCTGAG . 89.0 23.0 70.0 0.0 . 37 . . Atlas-SNP NMUR2 56923 hgsc.bcm.edu hg19 5 151784554 151784554 + Missense_Mutation SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 NMUR2,NS,haematopoietic_neoplasm,0,1 NMUR2 NM_020167 exon1 c.C121T p.R41C GGCTGCGCCGAGG . 161.0 71.0 157.0 0.0 . 111 . . Atlas-SNP ATXN1 6310 hgsc.bcm.edu hg19 6 16327864 16327864 + Missense_Mutation SNP G G C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 .,1 ATXN1 NM_001128164 exon7 c.C678G p.H226Q GCTGAGGTGCTGC . 48.0 4.0 63.0 0.0 . 117 . . Atlas-SNP PPP1R18 170954 hgsc.bcm.edu hg19 6 30652197 30652197 + Missense_Mutation SNP T T A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . . NM_001134870 exon2 c.A1599T p.R533S GTGGTGTCTTTCG . 93.0 52.0 115.0 0.0 . . . . Atlas-SNP VEGFA 7422 hgsc.bcm.edu hg19 6 43746274 43746274 + Splice_Site SNP G G C rs113966402 alternate_allele TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . VEGFA NM_001171625 exon4 c.392+1G>C . ATGCAGGTGAGGA . 77.0 5.0 99.0 0.0 . 21 . . Atlas-SNP MAP3K7 6885 hgsc.bcm.edu hg19 6 91229026 91229026 + Missense_Mutation SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . MAP3K7 NM_145331 exon15 c.C1475T p.S492L TTATCTGATCCAT . 90.0 44.0 103.0 0.0 . 100 . . Atlas-SNP TRRAP 8295 hgsc.bcm.edu hg19 7 98586442 98586442 + Silent SNP G G T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . TRRAP NM_001244580 exon62 c.G9456T p.L3152L TGTGCTGGTGAAA . 50.0 16.0 55.0 0.0 . 863 . . Atlas-SNP ACHE 43 hgsc.bcm.edu hg19 7 100491024 100491024 + Missense_Mutation SNP C C A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . ACHE NM_000665 exon2 c.G830T p.R277L GCCCTGCGACGGG . 41.0 17.0 45.0 0.0 . 80 . . Atlas-SNP LHFPL3 375612 hgsc.bcm.edu hg19 7 103969251 103969251 + Silent SNP C C T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 LHFPL3,NS,carcinoma,0,1 LHFPL3 NM_199000 exon1 c.C24T p.A8A CGCTGCCGCCGCC . 46.0 3.0 43.0 0.0 . 24 . . Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151874011 151874011 + Missense_Mutation SNP C C T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . MLL3 NM_170606 exon38 c.G8527A p.D2843N TCTCATCATTTTT . 74.0 36.0 75.0 0.0 . 1564 . . Atlas-SNP PABPC1 26986 hgsc.bcm.edu hg19 8 101721828 101721828 + Silent SNP A A C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PABPC1 NM_002568 exon8 c.T1104G p.A368A GCGCTGAGCTAAA . 222.0 158.0 87.0 0.0 . 76 . . Atlas-SNP KLF10 7071 hgsc.bcm.edu hg19 8 103663642 103663642 + Silent SNP C C A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . KLF10 NM_005655 exon3 c.G918T p.V306V CATGAACACAACA . 284.0 86.0 123.0 0.0 . 44 . . Atlas-SNP BNC2 54796 hgsc.bcm.edu hg19 9 16436154 16436154 + Missense_Mutation SNP C C T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . BNC2 NM_017637 exon6 c.G2038A p.E680K TCTCCTCTTGGGA . 51.0 21.0 103.0 0.0 . 166 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79252403 79252403 + Missense_Mutation SNP C C T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PRUNE2 NM_015225 exon14 c.G8894A p.G2965D GTTGCACCATTCA . 70.0 20.0 69.0 0.0 . 331 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79322011 79322011 + Silent SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PRUNE2 NM_015225 exon8 c.T5179C p.L1727L TGACCAAGAACTT . 111.0 7.0 75.0 0.0 . 331 . . Atlas-SNP VIM 7431 hgsc.bcm.edu hg19 10 17271486 17271486 + Missense_Mutation SNP G G T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . VIM NM_003380 exon2 c.G65T p.S22I CCGCGAGCCGGCC . 85.0 35.0 105.0 0.0 . 71 . . Atlas-SNP THNSL1 79896 hgsc.bcm.edu hg19 10 25312254 25312254 + Silent SNP A A C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . THNSL1 NM_024838 exon3 c.A102C p.S34S TCTTTCAAGAACC . 143.0 63.0 153.0 0.0 . 70 . . Atlas-SNP TBC1D12 23232 hgsc.bcm.edu hg19 10 96269915 96269915 + Silent SNP A A T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . TBC1D12 NM_015188 exon8 c.A1668T p.P556P ATTTCCATCTCTC . 98.0 47.0 105.0 0.0 . 51 . . Atlas-SNP BTRC 8945 hgsc.bcm.edu hg19 10 103285923 103285923 + Missense_Mutation SNP C C A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 BTRC,colon,carcinoma,0,2 BTRC NM_033637 exon6 c.C710A p.S237Y CAGATTCTCTGTG . 122.0 7.0 124.0 0.0 . 64 . . Atlas-SNP PLEKHS1 79949 hgsc.bcm.edu hg19 10 115536900 115536900 + Missense_Mutation SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PLEKHS1 NM_182601 exon11 c.G1049A p.G350D GGGAAGGCCCCCC . 59.0 10.0 74.0 0.0 . 19 . . Atlas-SNP CACUL1 143384 hgsc.bcm.edu hg19 10 120450798 120450798 + Missense_Mutation SNP A A C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . . NM_153810 exon7 c.T1004G p.L335R TGTATAAGTTCTC . 75.0 21.0 72.0 0.0 . . . . Atlas-SNP PLEKHA1 59338 hgsc.bcm.edu hg19 10 124172538 124172538 + Missense_Mutation SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PLEKHA1 NM_021622 exon6 c.G445A p.V149I GGTGGCGTACCCA . 111.0 5.0 140.0 0.0 . 33 . . Atlas-SNP DHX32 55760 hgsc.bcm.edu hg19 10 127529548 127529548 + Missense_Mutation SNP G G T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . DHX32 NM_018180 exon8 c.C1561A p.H521N GCACATGTGAAAA . 73.0 27.0 86.0 0.0 . 67 . . Atlas-SNP DHX32 55760 hgsc.bcm.edu hg19 10 127529549 127529549 + Silent SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . DHX32 NM_018180 exon8 c.A1560C p.S520S CACATGTGAAAAG . 73.0 28.0 87.0 0.0 . 67 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1094728 1094728 + Missense_Mutation SNP C C T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . MUC2 NM_002457 exon32 c.C5804T p.T1935M TGCAGACGACCAC . 78.0 30.0 91.0 0.0 . 614 . . Atlas-SNP OR52N5 390075 hgsc.bcm.edu hg19 11 5799571 5799571 + Silent SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . OR52N5 NM_001001922 exon1 c.C294T p.L98L TTCTTTGAGACTG . 183.0 14.0 189.0 0.0 . 58 . . Atlas-SNP PPP1R32 220004 hgsc.bcm.edu hg19 11 61252246 61252246 + Missense_Mutation SNP G G C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . . NM_001170753 exon5 c.G468C p.Q156H CCACCAGCAGCAG . 97.0 35.0 117.0 0.0 . . . . Atlas-SNP CCND1 595 hgsc.bcm.edu hg19 11 69466001 69466001 + Missense_Mutation SNP A A T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . CCND1 NM_053056 exon5 c.A839T p.E280V AGGAGGAGGTGGA . 144.0 6.0 186.0 0.0 . 107 . . Atlas-SNP C2CD3 26005 hgsc.bcm.edu hg19 11 73817446 73817446 + Missense_Mutation SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . C2CD3 NM_015531 exon13 c.A2055C p.E685D ACCATTTTCTTGT . 169.0 68.0 189.0 0.0 . 288 . . Atlas-SNP GUCY2C 2984 hgsc.bcm.edu hg19 12 14778727 14778727 + Missense_Mutation SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . GUCY2C NM_004963 exon21 c.A2372C p.D791A GCCCTGTCCCTCT . 85.0 4.0 119.0 0.0 . 126 . . Atlas-SNP ITGA7 3679 hgsc.bcm.edu hg19 12 56081819 56081819 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . ITGA7 NM_001144996 exon24 c.T3131C p.V1044A AGGATGACCCACC . 134.0 39.0 146.0 0.0 . 194 . . Atlas-SNP ITGA7 3679 hgsc.bcm.edu hg19 12 56081826 56081826 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . ITGA7 NM_001144996 exon24 c.T3124C p.W1042R CCCACCAGGGCAC . 142.0 43.0 143.0 0.0 . 194 . . Atlas-SNP CCT2 10576 hgsc.bcm.edu hg19 12 69992133 69992133 + Missense_Mutation SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . CCT2 NM_006431 exon14 c.A1367G p.Y456C CAGGCTATGACAG . 371.0 111.0 322.0 0.0 . 49 . . Atlas-SNP LRRIQ1 84125 hgsc.bcm.edu hg19 12 85441230 85441230 + Missense_Mutation SNP A A C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . LRRIQ1 NM_001079910 exon6 c.A660C p.K220N GAAGAAATTAGAG . 633.0 159.0 486.0 1.0 . 512 . . Atlas-SNP SPATA13 221178 hgsc.bcm.edu hg19 13 24864943 24864943 + Missense_Mutation SNP C C G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SPATA13 NM_001166271 exon9 c.C3001G p.L1001V GGGTTCCTGCTCA . 140.0 60.0 192.0 0.0 . 92 . . Atlas-SNP DHRS4L1 728635 hgsc.bcm.edu hg19 14 24517969 24517969 + Silent SNP T T A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . . NM_001082488 exon8 c.T624A p.I208I GAACATTAGGGTG . 523.0 187.0 622.0 0.0 . . . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105407215 105407215 + Missense_Mutation SNP C C A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . AHNAK2 NM_138420 exon7 c.G14573T p.G4858V ACCTGACCAAGAG . 96.0 28.0 132.0 0.0 . 719 . . Atlas-SNP NOP10 55505 hgsc.bcm.edu hg19 15 34634207 34634207 + Missense_Mutation SNP T T C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 NOP10,colon,carcinoma,0,1 NOP10 NM_018648 exon2 c.A157G p.K53E GCACCTTGAAGCG . 91.0 40.0 113.0 0.0 . 8 . . Atlas-SNP SH3GL3 6457 hgsc.bcm.edu hg19 15 84237305 84237305 + Missense_Mutation SNP T T C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SH3GL3 NM_003027 exon4 c.T212C p.L71P GAATGCTGAACAC . 68.0 29.0 81.0 0.0 . 91 . . Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86198736 86198736 + Missense_Mutation SNP G G T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . AKAP13 NM_007200 exon11 c.G4463T p.G1488V CTCATGGCAGTGA . 93.0 4.0 84.0 0.0 . 394 . . Atlas-SNP NTRK3 4916 hgsc.bcm.edu hg19 15 88670420 88670420 + Silent SNP G G C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 NTRK3_ENST00000360948,NS,haematopoietic_neoplasm,0,3 NTRK3 NM_001012338 exon12 c.C1266G p.T422T TTTGTGGGTCACA . 171.0 79.0 225.0 0.0 . 587 . . Atlas-SNP CLDN9 9080 hgsc.bcm.edu hg19 16 3063428 3063428 + Missense_Mutation SNP T T C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 CLDN9,NS,carcinoma,0,1 CLDN9 NM_020982 exon1 c.T65C p.L22P GGACCCTGGTGTC . 55.0 3.0 78.0 0.0 . 33 . . Atlas-SNP LOC81691 0 hgsc.bcm.edu hg19 16 20857589 20857589 + Missense_Mutation SNP G G T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . LOC81691 NM_030941 exon19 c.G2171T p.R724L GGAGCCGGAAGAT . 100.0 4.0 125.0 0.0 . 41 . . Atlas-SNP ANKRD11 29123 hgsc.bcm.edu hg19 16 89337284 89337284 + Missense_Mutation SNP T T A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . ANKRD11 NM_001256183 exon12 c.A7747T p.N2583Y GGGCGTTGAAACG . 68.0 33.0 85.0 0.0 . 195 . . Atlas-SNP NCOR1 9611 hgsc.bcm.edu hg19 17 15965046 15965046 + Missense_Mutation SNP T T A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . NCOR1 NM_006311 exon37 c.A5550T p.E1850D ATTTTCTTCTAAC . 112.0 40.0 107.0 0.0 . 240 . . Atlas-SNP SUPT6H 6830 hgsc.bcm.edu hg19 17 27027983 27027983 + Missense_Mutation SNP C C T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SUPT6H NM_003170 exon36 c.C4831T p.P1611S CAGCAGCCAGTGG . 135.0 43.0 106.0 0.0 . 165 . . Atlas-SNP COL1A1 1277 hgsc.bcm.edu hg19 17 48266329 48266329 + Missense_Mutation SNP G G T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . COL1A1 NM_000088 exon41 c.C2980A p.R994S GACCACGTTCACC . 112.0 38.0 155.0 0.0 . 158 . . Atlas-SNP CARD14 79092 hgsc.bcm.edu hg19 17 78164640 78164640 + Missense_Mutation SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . CARD14 NM_024110 exon7 c.G1031A p.R344K TCTACAGGGAGAA . 66.0 17.0 87.0 0.0 . 98 . . Atlas-SNP OSBPL1A 114876 hgsc.bcm.edu hg19 18 21758132 21758132 + Silent SNP G G T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . OSBPL1A NM_080597 exon21 c.C1938A p.S646S CTGTTCGGAGATG . 94.0 36.0 107.0 0.0 . 94 . . Atlas-SNP CCDC102B 79839 hgsc.bcm.edu hg19 18 66678323 66678323 + Silent SNP C C T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . CCDC102B NM_001093729 exon9 c.C1416T p.L472L GGGACTCAATCAA . 329.0 22.0 263.0 0.0 . 92 . . Atlas-SNP MYO1F 4542 hgsc.bcm.edu hg19 19 8587279 8587279 + Missense_Mutation SNP T T C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . MYO1F NM_012335 exon27 c.A3202G p.I1068V TCTCAATGACCTC . 43.0 23.0 45.0 0.0 . 128 . . Atlas-SNP HSPB6 126393 hgsc.bcm.edu hg19 19 36247733 36247733 + Silent SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . HSPB6 NM_144617 exon1 c.C177T p.S59S CGCCACGCTGGGT . 79.0 5.0 73.0 0.0 . 1 . . Atlas-SNP PSMD8 5714 hgsc.bcm.edu hg19 19 38867017 38867017 + Missense_Mutation SNP A A T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PSMD8 NM_002812 exon3 c.A459T p.Q153H GGCCCAATGGAGC . 93.0 43.0 125.0 0.0 . 31 . . Atlas-SNP PRKD2 25865 hgsc.bcm.edu hg19 19 47200429 47200429 + Silent SNP G G A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . PRKD2 NM_016457 exon9 c.C1302T p.T434T TCTGTTGGTCGTG . 60.0 29.0 83.0 0.0 . 94 . . Atlas-SNP ZNF808 388558 hgsc.bcm.edu hg19 19 53056997 53056997 + Missense_Mutation SNP C C G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . ZNF808 NM_001039886 exon5 c.C828G p.C276W TGCATGCCATCGT . 121.0 40.0 149.0 0.0 . 81 . . Atlas-SNP ZNF83 55769 hgsc.bcm.edu hg19 19 53117612 53117612 + Missense_Mutation SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . ZNF83 NM_018300 exon3 c.A206C p.H69P TATGTATGAGAAA . 137.0 54.0 137.0 0.0 . 73 . . Atlas-SNP CENPB 1059 hgsc.bcm.edu hg19 20 3765921 3765921 + Missense_Mutation SNP C C G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . CENPB NM_001810 exon1 c.G1210C p.E404Q CTCCCTCACTCTT . 34.0 12.0 47.0 0.0 . 24 . . Atlas-SNP MKKS 8195 hgsc.bcm.edu hg19 20 10393869 10393869 + Silent SNP A A C novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . MKKS NM_170784 exon3 c.T294G p.L98L GCAGCAAAGAATA . 84.0 30.0 113.0 0.0 . 35 . . Atlas-SNP NCOA6 23054 hgsc.bcm.edu hg19 20 33345769 33345769 + Missense_Mutation SNP T T A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . NCOA6 NM_014071 exon7 c.A782T p.Q261L TGCTGCTGCAGCT . 78.0 4.0 71.0 0.0 . 219 . . Atlas-SNP TBC1D10A 83874 hgsc.bcm.edu hg19 22 30690978 30690978 + Missense_Mutation SNP C C A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . TBC1D10A NM_001204240 exon5 c.G612T p.Q204H CTGGGCCTGGCAG . 103.0 24.0 102.0 0.0 . 49 . . Atlas-SNP HMOX1 3162 hgsc.bcm.edu hg19 22 35782898 35782898 + Missense_Mutation SNP G G T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . HMOX1 NM_002133 exon3 c.G365T p.G122V AGGTGGGGCGCAC . 77.0 7.0 95.0 0.0 . 32 . . Atlas-SNP TOB2 10766 hgsc.bcm.edu hg19 22 41833266 41833266 + Silent SNP A A G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . TOB2 NM_016272 exon2 c.T84C p.F28F CTCCCCAAACAGG . 51.0 20.0 110.0 0.0 . 30 . . Atlas-SNP MXRA5 25878 hgsc.bcm.edu hg19 X 3240425 3240425 + Missense_Mutation SNP C C T novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . MXRA5 NM_015419 exon5 c.G3301A p.G1101S TTATACCCAGTGT . 60.0 4.0 82.0 0.0 . 815 . . Atlas-SNP THOC2 57187 hgsc.bcm.edu hg19 X 122772802 122772802 + Missense_Mutation SNP T T G novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . THOC2 NM_001081550 exon17 c.A1823C p.N608T TCATAATTCAGTG . 147.0 113.0 192.0 0.0 . 310 . . Atlas-SNP SAR1B 51128 hgsc.bcm.edu hg19 5 133942642 133942642 + Frame_Shift_Del DEL A A - novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SAR1B NM_001033503 exon8 c.596delA p.X199Y . . 96.0 45.0 114.0 0.0 . 19 . . Atlas-INDEL EGFR 1956 hgsc.bcm.edu hg19 7 55248998 55248999 + In_Frame_Ins INS - - TGGCCAGCG novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 EGFR,caecum,carcinoma,0,1 EGFR NM_005228 exon20 c.2296_2297insTGGCCAGCG p.M766delinsMASV . . 81.0 14.0 105.0 0.0 . 20426 . . Atlas-INDEL FOXN2 3344 hgsc.bcm.edu hg19 2 48602157 48602167 + Frame_Shift_Del DEL TCTTTAGCCAC TCTTTAGCCAC - novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 TCTTTAGCCAC TCTTTAGCCAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . FOXN2 NM_002158 exon7 c.870_880del p.290_294del . . 116.0 39.0 154.0 0.0 . 39 . . Atlas-INDEL CABIN1 23523 hgsc.bcm.edu hg19 22 24515513 24515539 + In_Frame_Del DEL CCCCAGGGGCTGCCGGCTGGTGCTGAG CCCCAGGGGCTGCCGGCTGGTGCTGAG - novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 CCCCAGGGGCTGCCGGCTGGTGCTGAG CCCCAGGGGCTGCCGGCTGGTGCTGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . CABIN1 NM_001199281 exon28 c.4479_4505del p.1493_1502del . . 62.0 12.0 91.0 0.0 . 153 . . Atlas-INDEL SOCS3 9021 hgsc.bcm.edu hg19 17 76354878 76354878 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . SOCS3 NM_003955 exon2 c.300delC p.G100fs . . 109.0 37.0 118.0 0.0 . 16 . . Atlas-INDEL MACF1 23499 hgsc.bcm.edu hg19 1 39824861 39824862 + Frame_Shift_Ins INS - - A novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . MACF1 NM_012090 exon43 c.5983_5984insA p.Q1995fs . . 399.0 51.0 484.0 0.0 . 909 . . Atlas-INDEL RFTN1 23180 hgsc.bcm.edu hg19 3 16368341 16368341 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACY-01A-11D-A40R-10 TCGA-DD-AACY-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b7cb238c-7b7f-41e9-acc4-2173a66c4f20 96563036-f486-49db-9442-d334ebc044a9 . RFTN1 NM_015150 exon8 c.1190delT p.L397fs . . 28.0 17.0 47.0 0.0 . 79 . . Atlas-INDEL