Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ECE1	1889	hgsc.bcm.edu	hg19	1	21599275	21599275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ECE1	NM_001397	exon4	c.A410G	p.N137S	ACTGGGTTGGCCT	.	151.0	53.0	139.0	0.0	.	76	.	.	Atlas-SNP
CLCA1	1179	hgsc.bcm.edu	hg19	1	86960069	86960069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CLCA1	NM_001285	exon11	c.C1880A	p.T627K	GTGTCACAGCCCT	.	226.0	106.0	138.0	0.0	.	109	.	.	Atlas-SNP
GSTM3	2947	hgsc.bcm.edu	hg19	1	110280775	110280775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	GSTM3	NM_000849	exon6	c.A310G	p.I104V	TCTCTATGATGTC	.	159.0	58.0	99.0	0.0	.	21	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152086518	152086518	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	TCHH	NM_007113	exon2	c.A39G	p.E13E	GAAAATTTCAGTG	.	145.0	58.0	72.0	0.0	.	275	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	DENND4B	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	120.0	8.0	21.0	0.0	.	210	.	.	Atlas-SNP
RPS27	6232	hgsc.bcm.edu	hg19	1	153963600	153963600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	RPS27	NM_001030	exon2	c.G16A	p.D6N	GCAAAGGATCTCC	.	119.0	17.0	41.0	0.0	.	6	.	.	Atlas-SNP
SCAMP3	10067	hgsc.bcm.edu	hg19	1	155230399	155230399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	SCAMP3	NM_005698	exon3	c.G196T	p.A66S	AGGGAGCTGAGGG	.	147.0	76.0	45.0	0.0	.	33	.	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	180013265	180013265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CEP350	NM_014810	exon21	c.G4579T	p.D1527Y	TCATATGATAGTT	.	150.0	63.0	60.0	0.0	.	418	.	.	Atlas-SNP
PRELP	5549	hgsc.bcm.edu	hg19	1	203452997	203452997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	PRELP	NM_201348	exon2	c.G685A	p.A229T	AACCTGGCCCACA	.	305.0	77.0	115.0	0.0	.	63	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207644091	207644091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CR2	NM_001006658	exon7	c.A1232G	p.Q411R	AATGCCAGGCCCC	.	194.0	42.0	61.0	0.0	.	164	.	.	Atlas-SNP
GPATCH2	55105	hgsc.bcm.edu	hg19	1	217688227	217688227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	GPATCH2	NM_018040	exon6	c.C1103T	p.P368L	GGAATGGGTACCT	.	776.0	194.0	271.0	0.0	.	53	.	.	Atlas-SNP
DNAJC27	51277	hgsc.bcm.edu	hg19	2	25190147	25190147	+	Nonsense_Mutation	SNP	G	G	A	rs147784881		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	DNAJC27,colon,carcinoma,0,1	DNAJC27	NM_016544	exon2	c.C103T	p.R35X	AGTATCGCTTTAT	.	297.0	128.0	211.0	0.0	.	37	.	G|1.000;A|0.000	Atlas-SNP
C2orf53	339779	hgsc.bcm.edu	hg19	2	27360538	27360538	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	C2orf53	NM_178553	exon3	c.G660T	p.G220G	GCGGTGCCCCAGC	.	126.0	57.0	76.0	0.0	.	45	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32695253	32695253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	BIRC6	NM_016252	exon31	c.C6365G	p.S2122C	TACTTTCCTGCAT	.	99.0	44.0	60.0	0.0	.	838	.	.	Atlas-SNP
RTN4	57142	hgsc.bcm.edu	hg19	2	55201875	55201875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	RTN4	NM_020532	exon6	c.C3386T	p.T1129I	ACATAGGTAAATA	.	359.0	154.0	226.0	0.0	.	189	.	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	hg19	2	71060902	71060902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CD207	NM_015717	exon3	c.T440C	p.V147A	GTACTGACTTCTT	.	144.0	55.0	99.0	0.0	.	47	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84832694	84832694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	DNAH6	NM_001370	exon20	c.T3152G	p.L1051R	TTATACTGGGCGG	.	152.0	63.0	79.0	0.0	.	194	.	.	Atlas-SNP
TMEM150A	129303	hgsc.bcm.edu	hg19	2	85828182	85828182	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	TMEM150A	NM_001031738	exon4	c.C162G	p.P54P	GGTCTTGGGACCC	.	118.0	45.0	80.0	0.0	.	15	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141819790	141819790	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	LRP1B	NM_018557	exon8	c.A1066T	p.M356L	CATCCATGTCACA	.	88.0	33.0	58.0	0.0	.	1315	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179477198	179477198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	TTN	NM_001267550	exon266	c.A50054G	p.N16685S	ATGTAGTTGGTGA	.	73.0	31.0	54.0	0.0	.	18412	.	.	Atlas-SNP
SLC40A1	30061	hgsc.bcm.edu	hg19	2	190428726	190428726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	SLC40A1	NM_014585	exon7	c.C986A	p.T329K	TACCCTGTGGTGA	.	219.0	94.0	150.0	0.0	.	51	.	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	204078361	204078361	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	NBEAL1	NM_001114132	exon54	c.T7968C	p.V2656V	GGGTGTTGGCAAG	.	136.0	65.0	97.0	0.0	.	266	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215854156	215854156	+	Silent	SNP	C	C	G	rs71428357	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ABCA12	NM_173076	exon26	c.G3726C	p.P1242P	CTGAACCGGGGAG	.	301.0	129.0	224.0	0.0	.	368	.	C|0.925;T|0.075	Atlas-SNP
CTDSP1	58190	hgsc.bcm.edu	hg19	2	219268052	219268052	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CTDSP1	NM_021198	exon6	c.A569T	p.K190M	ACGTGAAGGACCT	.	96.0	43.0	69.0	0.0	.	19	.	.	Atlas-SNP
KIF15	56992	hgsc.bcm.edu	hg19	3	44869717	44869717	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	KIF15	NM_020242	exon24	c.A2868G	p.V956V	AAAAGTACAGAAA	.	95.0	49.0	85.0	0.0	.	103	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48614152	48614152	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	COL7A1	NM_000094	exon67	c.A5657T	p.Q1886L	GGCCCCTGGGGTC	.	101.0	41.0	73.0	0.0	.	320	.	.	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48683636	48683636	+	Silent	SNP	G	G	A	rs375748006		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CELSR3	NM_001407	exon22	c.C7350T	p.H2450H	GCGTCCGTGGAAC	.	133.0	59.0	109.0	0.0	.	237	.	.	Atlas-SNP
LRIG1	26018	hgsc.bcm.edu	hg19	3	66434613	66434613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	LRIG1	NM_015541	exon14	c.C1873T	p.H625Y	TTGGGTGACCTGT	.	210.0	99.0	156.0	0.0	.	138	.	.	Atlas-SNP
GPR128	84873	hgsc.bcm.edu	hg19	3	100387946	100387946	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	GPR128	NM_032787	exon15	c.A2133G	p.T711T	CACTACACAGGTA	.	192.0	68.0	120.0	0.0	.	126	.	.	Atlas-SNP
PLXND1	23129	hgsc.bcm.edu	hg19	3	129288753	129288753	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	PLXND1	NM_015103	exon20	c.G3798A	p.G1266G	GCTGCCCCCCAGC	.	38.0	7.0	47.0	0.0	.	149	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142188365	142188365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ATR	NM_001184	exon38	c.A6366G	p.I2122M	CTTGTTTATTTTA	.	243.0	109.0	137.0	0.0	.	285	.	.	Atlas-SNP
P2RY14	9934	hgsc.bcm.edu	hg19	3	150932059	150932059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	P2RY14	NM_014879	exon3	c.C46A	p.Q16K	GGTTCTGAGAGCA	.	69.0	21.0	52.0	0.0	.	50	.	.	Atlas-SNP
ECT2	1894	hgsc.bcm.edu	hg19	3	172499968	172499968	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ECT2	NM_001258315	exon15	c.C1564G	p.L522V	GAAGACCTTATAG	.	113.0	5.0	65.0	0.0	.	79	.	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	hg19	3	180379687	180379687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CCDC39	NM_181426	exon3	c.G319A	p.E107K	CCATCTCATTTTC	.	259.0	100.0	179.0	0.0	.	242	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195506646	195506646	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MUC4	NM_018406	exon2	c.C11805A	p.T3935T	AAGAGGGGTGGCA	.	206.0	9.0	136.0	0.0	.	1505	.	.	Atlas-SNP
PDGFRA	5156	hgsc.bcm.edu	hg19	4	55156601	55156601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	PDGFRA	NM_006206	exon22	c.A3002T	p.K1001M	AGCTGAAGGACTG	.	93.0	60.0	154.0	0.0	.	1583	.	.	Atlas-SNP
PDGFRA	5156	hgsc.bcm.edu	hg19	4	55156602	55156602	+	Missense_Mutation	SNP	G	G	T	rs373642812	alternate_allele	TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	PDGFRA	NM_006206	exon22	c.G3003T	p.K1001N	GCTGAAGGACTGG	.	95.0	62.0	154.0	0.0	.	1583	.	.	Atlas-SNP
CLGN	1047	hgsc.bcm.edu	hg19	4	141334243	141334243	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CLGN	.	.	.	.	ATTATCTGTGAAA	.	239.0	101.0	322.0	0.0	.	76	.	.	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	hg19	4	143067061	143067061	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	INPP4B	NM_003866	exon19	c.G1652C	p.G551A	CCACTGCCTTCAC	.	110.0	83.0	123.0	0.0	.	132	.	.	Atlas-SNP
FAM105A	54491	hgsc.bcm.edu	hg19	5	14582020	14582020	+	Missense_Mutation	SNP	G	G	A	rs375610503		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	FAM105A	NM_019018	exon1	c.G17A	p.S6N	CAAGGAGCCCCAC	.	6.0	6.0	0.0	0.0	.	32	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16766245	16766245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MYO10	NM_012334	exon11	c.C1123A	p.Q375K	ATCTCTGGGTCAA	.	203.0	58.0	120.0	0.0	.	198	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16766246	16766246	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MYO10	NM_012334	exon11	c.C1122A	p.T374T	TCTCTGGGTCAAA	.	203.0	58.0	120.0	0.0	.	198	.	.	Atlas-SNP
PRKAA1	5562	hgsc.bcm.edu	hg19	5	40764913	40764913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	PRKAA1	NM_206907	exon8	c.C1294G	p.P432A	CATTTGGTCGACT	.	208.0	125.0	104.0	0.0	.	27	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139828827	139828827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ANKHD1	NM_024668	exon7	c.A1179T	p.E393D	ACTTGAAGCTGGT	.	692.0	198.0	311.0	0.0	.	233	.	.	Atlas-SNP
PCDHAC1	56135	hgsc.bcm.edu	hg19	5	140308283	140308283	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	PCDHAC1	NM_031882	exon1	c.G1806A	p.R602R	CTCCCGGGCGTCT	.	151.0	44.0	61.0	0.0	.	141	.	.	Atlas-SNP
NMUR2	56923	hgsc.bcm.edu	hg19	5	151784217	151784217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	NMUR2,NS,carcinoma,0,1	NMUR2	NM_020167	exon1	c.G458A	p.R153H	TTGGCGCGGAACG	.	159.0	37.0	78.0	0.0	.	111	.	.	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	hg19	6	34003690	34003690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	GRM4_ENST00000374181,NS,carcinoma,0,6	GRM4	NM_000841	exon9	c.C2197T	p.R733W	GTGTCCGCTGGTC	.	127.0	43.0	72.0	0.0	.	317	.	.	Atlas-SNP
MMS22L	253714	hgsc.bcm.edu	hg19	6	97613250	97613250	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MMS22L	NM_198468	exon21	c.T3093G	p.I1031M	TCGCCCAATATAC	.	124.0	66.0	90.0	0.0	.	102	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106992501	106992501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	AIM1	NM_001624	exon10	c.G3871A	p.G1291R	GAAGAAGGAGAAT	.	147.0	61.0	99.0	0.0	.	161	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136599264	136599264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	BCLAF1	NM_014739	exon4	c.A755C	p.H252P	GCAGAGTGAACTG	.	221.0	38.0	143.0	0.0	.	203	.	.	Atlas-SNP
RADIL	55698	hgsc.bcm.edu	hg19	7	4839835	4839835	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	RADIL	NM_018059	exon13	c.C2949A	p.P983P	CCCGGAGGGGCCT	.	107.0	31.0	42.0	0.0	.	110	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100681743	100681743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MUC17	NM_001040105	exon3	c.T7046C	p.M2349T	CCACAATGGTGGC	.	123.0	74.0	68.0	0.0	.	804	.	.	Atlas-SNP
CADPS2	93664	hgsc.bcm.edu	hg19	7	122056186	122056186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CADPS2	NM_001167940	exon19	c.C2530A	p.L844M	CTTCCAGCTTTCT	.	86.0	19.0	35.0	0.0	.	116	.	.	Atlas-SNP
ZNF746	155061	hgsc.bcm.edu	hg19	7	149171588	149171588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ZNF746	NM_001163474	exon7	c.C1825T	p.P609S	GATCAGGAGGTGC	.	74.0	31.0	58.0	0.0	.	68	.	.	Atlas-SNP
ATP6V1H	51606	hgsc.bcm.edu	hg19	8	54669202	54669202	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ATP6V1H	NM_015941	exon12	c.T1190G	p.L397R	TCCAAAAGTTTTG	.	91.0	44.0	78.0	0.0	.	66	.	.	Atlas-SNP
NKAIN3	286183	hgsc.bcm.edu	hg19	8	63161677	63161677	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	NKAIN3	NM_173688	exon1	c.G45T	p.A15A	CTGCGCGCTGCAG	.	81.0	35.0	81.0	0.0	.	32	.	.	Atlas-SNP
INTS8	55656	hgsc.bcm.edu	hg19	8	95879510	95879510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	INTS8	NM_017864	exon20	c.A2359G	p.I787V	GAGGACATTGTGA	.	624.0	401.0	283.0	0.0	.	92	.	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100128060	100128060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	VPS13B	NM_152564	exon7	c.G895T	p.D299Y	ATAGAGGACCTTA	.	570.0	170.0	242.0	0.0	.	811	.	.	Atlas-SNP
C8orf33	65265	hgsc.bcm.edu	hg19	8	146278796	146278796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	C8orf33	NM_023080	exon4	c.G517A	p.E173K	GAAGCCGAATGGC	.	107.0	15.0	63.0	0.0	.	25	.	.	Atlas-SNP
IFNA14	3448	hgsc.bcm.edu	hg19	9	21239511	21239511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	IFNA14	NM_002172	exon1	c.G424T	p.A142S	TCACAGCCAGGAT	.	162.0	19.0	129.0	0.0	.	29	.	.	Atlas-SNP
IFNA14	3448	hgsc.bcm.edu	hg19	9	21239512	21239512	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	IFNA14	NM_002172	exon1	c.G423C	p.L141L	CACAGCCAGGATG	.	162.0	18.0	130.0	0.0	.	29	.	.	Atlas-SNP
ANKRD18B	441459	hgsc.bcm.edu	hg19	9	33548246	33548246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ANKRD18B	NM_001244752	exon9	c.A1271T	p.E424V	GACTAGAAGCTGA	.	102.0	49.0	70.0	0.0	.	46	.	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84606650	84606650	+	Missense_Mutation	SNP	G	G	T	rs368407426		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	.	NM_001001670	exon4	c.G1265T	p.R422M	AAAAAAGGGGTGA	.	262.0	110.0	155.0	0.0	.	.	.	.	Atlas-SNP
OR1N1	138883	hgsc.bcm.edu	hg19	9	125288746	125288746	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	OR1N1	NM_012363	exon1	c.A827C	p.Y276S	ATGGTGTACATTG	.	108.0	47.0	73.0	0.0	.	38	.	.	Atlas-SNP
AK1	203	hgsc.bcm.edu	hg19	9	130630625	130630625	+	Missense_Mutation	SNP	T	T	C	rs137853203		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	AK1	NM_000476	exon6	c.A491G	p.Y164C	TTCTCATAGAAGG	.	41.0	24.0	31.0	0.0	.	13	.	.	Atlas-SNP
AIF1L	83543	hgsc.bcm.edu	hg19	9	133993147	133993147	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	AIF1L	NM_001185095	exon6	c.G285T	p.L95L	AGACCTGATGTCT	.	81.0	36.0	86.0	0.0	.	15	.	.	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134073951	134073951	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	NUP214	NM_005085	exon29	c.T5070G	p.T1690T	GCAGACTGGTAGC	.	236.0	120.0	162.0	0.0	.	166	.	.	Atlas-SNP
ZSWIM8	23053	hgsc.bcm.edu	hg19	10	75548868	75548868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	.	NM_001242488	exon3	c.T377C	p.L126P	CGTGCCTGGCCAA	.	105.0	42.0	63.0	0.0	.	.	.	.	Atlas-SNP
RRM1	6240	hgsc.bcm.edu	hg19	11	4148360	4148360	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	RRM1	NM_001033	exon14	c.A1566G	p.A522A	GAGTGCAGAAGCC	.	124.0	56.0	103.0	0.0	.	31	.	.	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	hg19	11	55579631	55579631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	OR5L1,trunk,malignant_melanoma,0,1	OR5L1	NM_001004738	exon1	c.C689T	p.S230F	TGGGCTCTGCAGA	.	70.0	29.0	74.0	0.0	.	145	.	.	Atlas-SNP
DAK	26007	hgsc.bcm.edu	hg19	11	61111672	61111672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	DAK	NM_015533	exon13	c.G1167T	p.E389D	CCTGGAGGAACAC	.	152.0	72.0	103.0	0.0	.	52	.	.	Atlas-SNP
CHRM1	1128	hgsc.bcm.edu	hg19	11	62677945	62677945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CHRM1	NM_000738	exon2	c.C628T	p.R210C	AGATGCGCCAGTA	.	62.0	23.0	52.0	0.0	.	29	.	.	Atlas-SNP
RSF1	51773	hgsc.bcm.edu	hg19	11	77409582	77409582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	RSF1	NM_016578	exon7	c.G2665T	p.D889Y	CATCATCTGCTAG	.	147.0	58.0	86.0	0.0	.	105	.	.	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	hg19	11	129754016	129754016	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	NFRKB	NM_006165	exon6	c.T840C	p.S280S	CAGGTCACTGTCC	.	92.0	35.0	59.0	0.0	.	101	.	.	Atlas-SNP
ZNF384	171017	hgsc.bcm.edu	hg19	12	6777070	6777070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	ZNF384_ENST00000361959,caecum,carcinoma,+1,4	ZNF384	NM_001135734	exon11	c.A1544C	p.Q515P	GGCTGTTGCTGCT	.	66.0	6.0	48.0	0.0	.	102	.	.	Atlas-SNP
ZNF384	171017	hgsc.bcm.edu	hg19	12	6777075	6777075	+	Silent	SNP	C	C	T	rs1052680	alternate_allele	TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ZNF384	NM_001135734	exon11	c.G1539A	p.Q513Q	TTGCTGCTGCTGC	.	62.0	5.0	47.0	0.0	.	102	.	C|1.000;|0.000	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49426793	49426793	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MLL2	NM_003482	exon39	c.C11695T	p.Q3899X	GAAGCTGCTGTAA	.	48.0	21.0	29.0	0.0	.	1173	.	.	Atlas-SNP
DGKA	1606	hgsc.bcm.edu	hg19	12	56346653	56346653	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	DGKA	NM_201554	exon21	c.C1879G	p.Q627E	ATCAACCAGGCCT	.	128.0	55.0	83.0	0.0	.	70	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72017292	72017292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ZFC3H1	NM_144982	exon24	c.A4592G	p.H1531R	ATAAGATGTATGT	.	175.0	65.0	111.0	0.0	.	172	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72017293	72017293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ZFC3H1	NM_144982	exon24	c.C4591T	p.H1531Y	TAAGATGTATGTA	.	175.0	64.0	111.0	0.0	.	172	.	.	Atlas-SNP
TMTC2	160335	hgsc.bcm.edu	hg19	12	83289601	83289601	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	TMTC2	NM_152588	exon3	c.A659C	p.K220T	AGAGGAAGAACTT	.	96.0	34.0	70.0	0.0	.	100	.	.	Atlas-SNP
ANKRD13A	88455	hgsc.bcm.edu	hg19	12	110465512	110465512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ANKRD13A	NM_033121	exon9	c.G886T	p.D296Y	GTAGCAGACAGGA	.	130.0	62.0	83.0	0.0	.	39	.	.	Atlas-SNP
ANAPC7	51434	hgsc.bcm.edu	hg19	12	110812008	110812008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ANAPC7	NM_016238	exon11	c.G1741A	p.G581S	CGCTGCCCTCCAG	.	59.0	30.0	47.0	0.0	.	68	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124839467	124839467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	NCOR2	NM_006312	exon27	c.C3400T	p.H1134Y	GGACGTGGAGCTG	.	77.0	25.0	48.0	0.0	.	475	.	.	Atlas-SNP
NUPL1	9818	hgsc.bcm.edu	hg19	13	25895210	25895210	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	NUPL1	NM_014089	exon9	c.A930T	p.K310N	TGACAAATTGAAA	.	278.0	115.0	194.0	0.0	.	37	.	.	Atlas-SNP
PCDH17	27253	hgsc.bcm.edu	hg19	13	58207758	58207758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	PCDH17	NM_001040429	exon1	c.G1078A	p.A360T	CAGGGGGCGCTGA	.	34.0	24.0	32.0	0.0	.	304	.	.	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	hg19	13	60616914	60616914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	DIAPH3	NM_001042517	exon5	c.T536C	p.F179S	TGAATGAATTCCT	.	84.0	34.0	55.0	0.0	.	139	.	.	Atlas-SNP
OR4N2	390429	hgsc.bcm.edu	hg19	14	20296045	20296045	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	OR4N2	NM_001004723	exon1	c.G438A	p.L146L	GATGTTGGCTCTG	.	237.0	111.0	95.0	0.0	.	125	.	.	Atlas-SNP
REM2	161253	hgsc.bcm.edu	hg19	14	23355418	23355418	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	REM2	NM_173527	exon4	c.C705T	p.R235R	GGCCCGCTCCCGG	.	268.0	15.0	86.0	0.0	.	21	.	.	Atlas-SNP
C14orf93	60686	hgsc.bcm.edu	hg19	14	23459032	23459032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	C14orf93	NM_021944	exon5	c.T1003G	p.S335A	CTACTGAAATATT	.	249.0	116.0	80.0	0.0	.	33	.	.	Atlas-SNP
RABGGTA	5875	hgsc.bcm.edu	hg19	14	24737796	24737796	+	Silent	SNP	G	G	A	rs370715682		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	RABGGTA	NM_004581	exon9	c.C930T	p.N310N	CTGGTCGTTGAGG	.	105.0	50.0	41.0	0.0	.	43	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54306076	54306076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	UNC13C	NM_001080534	exon1	c.G976A	p.V326M	TTAAATGTGACTG	.	157.0	80.0	103.0	0.0	.	674	.	.	Atlas-SNP
PARP16	54956	hgsc.bcm.edu	hg19	15	65559101	65559101	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	PARP16	NM_017851	exon3	c.A318T	p.E106D	GATCTTTTCAAAC	.	147.0	58.0	96.0	0.0	.	23	.	.	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	hg19	15	66015255	66015255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	DENND4A	NM_001144823	exon12	c.A1519G	p.I507V	GAAGTATCTTCCA	.	92.0	30.0	55.0	0.0	.	217	.	.	Atlas-SNP
MAN2C1	4123	hgsc.bcm.edu	hg19	15	75660501	75660501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MAN2C1	NM_001256494	exon2	c.G140T	p.S47I	AGGAAGCTGGAGA	.	141.0	69.0	93.0	0.0	.	76	.	.	Atlas-SNP
CHSY1	22856	hgsc.bcm.edu	hg19	15	101718463	101718463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CHSY1	NM_014918	exon3	c.G1539C	p.K513N	GACGAGCTTCTTC	.	76.0	44.0	42.0	0.0	.	60	.	.	Atlas-SNP
MVP	9961	hgsc.bcm.edu	hg19	16	29859235	29859235	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MVP	NM_017458	exon15	c.G2607T	p.G869G	CCCTGGGGAGGGG	.	100.0	40.0	62.0	0.0	.	80	.	.	Atlas-SNP
CYBA	1535	hgsc.bcm.edu	hg19	16	88713512	88713512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CYBA	NM_000101	exon3	c.G200A	p.R67H	CACCAGCGCTCCA	.	18.0	12.0	27.0	0.0	.	12	.	.	Atlas-SNP
TRPV3	162514	hgsc.bcm.edu	hg19	17	3417211	3417211	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	TRPV3	NM_001258205	exon18	c.G2376A	p.X792X	CCGCTTCTACACC	.	50.0	41.0	51.0	0.0	.	85	.	.	Atlas-SNP
ANKFY1	51479	hgsc.bcm.edu	hg19	17	4111281	4111281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ANKFY1	NM_001257999	exon6	c.A805G	p.K269E	CCACTTTGATGGC	.	65.0	44.0	67.0	0.0	.	81	.	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10350423	10350423	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MYH4	NM_017533	exon35	c.C5076A	p.L1692L	TGCCCTGAGCTCT	.	81.0	35.0	55.0	0.0	.	349	.	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10363541	10363541	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MYH4	NM_017533	exon13	c.C1245A	p.T415T	GCCTTTGGTTACG	.	169.0	69.0	104.0	0.0	.	349	.	.	Atlas-SNP
SAMD14	201191	hgsc.bcm.edu	hg19	17	48194991	48194991	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	SAMD14	NM_001257359	exon4	c.G279T	p.P93P	CCCGGCCGGGGAC	.	80.0	31.0	51.0	0.0	.	36	.	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	hg19	19	8196466	8196466	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	FBN3	NM_032447	exon14	c.C1962T	p.P654P	CTGGCAGGGCTCC	.	128.0	44.0	99.0	0.0	.	300	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9083169	9083169	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MUC16	NM_024690	exon1	c.T8646A	p.T2882T	CCCCCAAGTTGGG	.	212.0	97.0	147.0	0.0	.	4315	.	.	Atlas-SNP
BEST2	54831	hgsc.bcm.edu	hg19	19	12865364	12865364	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	BEST2	NM_017682	exon3	c.248-2A>G	.	CCCTGCAGGCTTT	.	65.0	29.0	40.0	0.0	.	35	.	.	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17738725	17738725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	UNC13A_ENST00000519716,NS,carcinoma,0,2	UNC13A	NM_001080421	exon31	c.C3778A	p.Q1260K	GCTGTTGAGTGTT	.	29.0	11.0	19.0	0.0	.	299	.	.	Atlas-SNP
FCHO1	23149	hgsc.bcm.edu	hg19	19	17883504	17883504	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	FCHO1	NM_001161358	exon10	c.A744G	p.L248L	GATGCTACTCAGG	.	128.0	47.0	93.0	0.0	.	69	.	.	Atlas-SNP
HKR1	284459	hgsc.bcm.edu	hg19	19	37853629	37853629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	HKR1	NM_181786	exon6	c.C932T	p.T311M	GCTTTACGTGGAA	.	114.0	48.0	98.0	0.0	.	74	.	.	Atlas-SNP
SIRT2	22933	hgsc.bcm.edu	hg19	19	39371780	39371780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	SIRT2	NM_012237	exon11	c.G707A	p.G236D	CTCTCACCAAAAA	.	136.0	18.0	115.0	0.0	.	29	.	.	Atlas-SNP
LIPE	3991	hgsc.bcm.edu	hg19	19	42910418	42910418	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	LIPE	NM_005357	exon7	c.C2260G	p.P754A	TGGCCGGGTAGGC	.	105.0	42.0	63.0	0.0	.	83	.	.	Atlas-SNP
BAX	581	hgsc.bcm.edu	hg19	19	49464086	49464086	+	Missense_Mutation	SNP	C	C	T	rs369660551		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	BAX	NM_004324	exon5	c.C389T	p.P130L	AGGTGCCGGAACT	.	86.0	32.0	53.0	0.0	.	69	.	.	Atlas-SNP
KLK4	9622	hgsc.bcm.edu	hg19	19	51412004	51412004	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	KLK4	NM_004917	exon3	c.C306A	p.S102S	CCGTACGGAGAGG	.	77.0	28.0	45.0	0.0	.	46	.	.	Atlas-SNP
CPXM1	56265	hgsc.bcm.edu	hg19	20	2775922	2775922	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CPXM1	NM_019609	exon13	c.1860+1G>A	.	ATCCGACCTGCTC	.	98.0	45.0	62.0	0.0	.	107	.	.	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	hg19	20	46264396	46264396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	NCOA3	NM_001174088	exon11	c.G1473T	p.M491I	TATCATGATTTCT	.	133.0	55.0	103.0	0.0	.	156	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60898879	60898879	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	LAMA5	NM_005560	exon44	c.C5802T	p.R1934R	CTGGGTGCGGCCG	.	137.0	56.0	94.0	0.0	.	268	.	.	Atlas-SNP
ZGPAT	84619	hgsc.bcm.edu	hg19	20	62366733	62366733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ZGPAT	NM_032527	exon6	c.A1274C	p.Q425P	AAGGTCAGGCTCC	.	135.0	53.0	96.0	0.0	.	57	.	.	Atlas-SNP
ZGPAT	84619	hgsc.bcm.edu	hg19	20	62366751	62366751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ZGPAT	NM_032527	exon6	c.A1292G	p.E431G	CCCTAGAAGCCGG	.	152.0	61.0	102.0	0.0	.	57	.	.	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47783767	47783767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	PCNT	NM_006031	exon14	c.C2527T	p.P843S	CGGGAGCCGCCCA	.	80.0	34.0	82.0	0.0	.	283	.	.	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	hg19	22	18371957	18371957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	MICAL3	NM_015241	exon13	c.T1734A	p.N578K	TTGGTTATTCTTC	.	146.0	63.0	75.0	0.0	.	53	.	.	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	hg19	22	29439309	29439309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ZNRF3	NM_001206998	exon4	c.C524A	p.P175Q	AAGACCCGCTCAA	.	63.0	23.0	61.0	0.0	.	75	.	.	Atlas-SNP
NHS	4810	hgsc.bcm.edu	hg19	X	17746244	17746244	+	Missense_Mutation	SNP	T	T	G	rs3747295	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	NHS	NM_198270	exon6	c.T3955G	p.F1319V	AATCAATTTAAGC	.	246.0	235.0	81.0	0.0	.	302	.	0|0.003;C|0.382	Atlas-SNP
CHST7	56548	hgsc.bcm.edu	hg19	X	46433907	46433907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	CHST7	NM_019886	exon1	c.G541A	p.A181T	GCGCGCGCCCCGG	.	101.0	50.0	35.0	0.0	.	23	.	.	Atlas-SNP
ZMYM3	9203	hgsc.bcm.edu	hg19	X	70468643	70468643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	ZMYM3	NM_005096	exon9	c.C1630G	p.R544G	AGGGTCGGGGAGG	.	162.0	29.0	53.0	0.0	.	137	.	.	Atlas-SNP
AIFM1	9131	hgsc.bcm.edu	hg19	X	129270145	129270145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	AIFM1	NM_004208	exon12	c.A1180G	p.I394V	CCACTATGTGGTC	.	205.0	186.0	88.0	0.0	.	75	.	.	Atlas-SNP
HNRNPUL2	221092	hgsc.bcm.edu	hg19	11	62484565	62484581	+	Frame_Shift_Del	DEL	TTGTACTTAGTGACAAT	TTGTACTTAGTGACAAT	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	TTGTACTTAGTGACAAT	TTGTACTTAGTGACAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	HNRNPUL2	NM_001079559	exon11	c.1862_1878del	p.621_626del	.	.	110.0	27.0	98.0	0.0	.	41	.	.	Atlas-INDEL
IFIT3	3437	hgsc.bcm.edu	hg19	10	91098522	91098542	+	In_Frame_Del	DEL	GAGTGTGTAACCAGATTGAAT	GAGTGTGTAACCAGATTGAAT	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	GAGTGTGTAACCAGATTGAAT	GAGTGTGTAACCAGATTGAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	IFIT3	NM_001549	exon2	c.109_129del	p.37_43del	.	.	176.0	29.0	140.0	0.0	.	36	.	.	Atlas-INDEL
LAMB1	3912	hgsc.bcm.edu	hg19	7	107577640	107577684	+	In_Frame_Del	DEL	CTGTGCTGTTGCTTTGGGAAGTTGTGTCAGATAATTTCACTTCTA	CTGTGCTGTTGCTTTGGGAAGTTGTGTCAGATAATTTCACTTCTA	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	CTGTGCTGTTGCTTTGGGAAGTTGTGTCAGATAATTTCACTTCTA	CTGTGCTGTTGCTTTGGGAAGTTGTGTCAGATAATTTCACTTCTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	LAMB1	NM_002291	exon26	c.3801_3845del	p.1267_1282del	.	.	139.0	10.0	82.0	0.0	.	185	.	.	Atlas-INDEL
EP400NL	347918	hgsc.bcm.edu	hg19	12	132589368	132589386	+	RNA	DEL	AGCAGCAGGTGCTGCAGGG	AGCAGCAGGTGCTGCAGGG	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	AGCAGCAGGTGCTGCAGGG	AGCAGCAGGTGCTGCAGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	EP400NL	.	.	.	.	.	.	83.0	11.0	80.0	0.0	.	29	.	.	Atlas-INDEL
KRIT1	889	hgsc.bcm.edu	hg19	7	91865731	91865731	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	KRIT1	NM_194456	exon8	c.482delA	p.D161fs	.	.	136.0	54.0	39.0	0.0	.	66	.	.	Atlas-INDEL
DMXL2	23312	hgsc.bcm.edu	hg19	15	51768790	51768790	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	DMXL2	NM_001174116	exon27	c.6961delC	p.P2321fs	.	.	75.0	29.0	35.0	0.0	.	262	.	.	Atlas-INDEL
UBAC1	10422	hgsc.bcm.edu	hg19	9	138825357	138825357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	UBAC1	NM_016172	exon10	c.1108delG	p.E370fs	.	.	97.0	45.0	54.0	0.0	.	40	.	.	Atlas-INDEL
FAM151A	338094	hgsc.bcm.edu	hg19	1	55085632	55085636	+	Frame_Shift_Del	DEL	AGGTA	AGGTA	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	AGGTA	AGGTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	FAM151A	NM_176782	exon2	c.164_168del	p.55_56del	.	.	51.0	16.0	29.0	0.0	.	58	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7578477	7578504	+	Frame_Shift_Del	DEL	GGGTGTGGAATCAACCCACAGCTGCACA	GGGTGTGGAATCAACCCACAGCTGCACA	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	GGGTGTGGAATCAACCCACAGCTGCACA	GGGTGTGGAATCAACCCACAGCTGCACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	TP53_ENST00000545858,NS,carcinoma,+1,1	TP53	NM_001126112	exon5	c.427_454del	p.143_152del	.	.	50.0	17.0	105.0	0.0	.	33396	.	.	Atlas-INDEL
YES1	7525	hgsc.bcm.edu	hg19	18	743374	743375	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	YES1	NM_005433	exon7	c.766_767del	p.256_256del	.	.	121.0	72.0	53.0	0.0	.	50	.	.	Atlas-INDEL
LTBR	4055	hgsc.bcm.edu	hg19	12	6493827	6493827	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	LTBR	NM_002342	exon2	c.169delA	p.I57fs	.	.	97.0	41.0	62.0	0.0	.	30	.	.	Atlas-INDEL
NIPA2	81614	hgsc.bcm.edu	hg19	15	23006742	23006743	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-DD-AACF-01A-11D-A40R-10	TCGA-DD-AACF-10A-01D-A40U-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10de1a6c-59f9-4819-ae33-a37b0f025bd2	a93a98e3-6c06-4078-bdc4-f6d5306dd50c	.	NIPA2	NM_001184889	exon10	c.562_563del	p.188_188del	.	.	105.0	82.0	123.0	0.0	.	49	.	.	Atlas-INDEL