Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7798171	7798171	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	CAMTA1	NM_015215	exon16	c.A3811C	p.N1271H	GAGCCAAATATCA	.	84.0	30.0	65.0	0.0	.	226	.	.	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	hg19	1	24998064	24998064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SRRM1	NM_005839	exon16	c.T2588C	p.V863A	AGCCAGTGGCAGC	.	218.0	67.0	203.0	0.0	.	81	.	.	Atlas-SNP
CTPS1	1503	hgsc.bcm.edu	hg19	1	41449049	41449049	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	CTPS1	NM_001905	exon2	c.A87G	p.S29S	CAAGTCATGTGGT	.	257.0	84.0	231.0	0.0	.	34	.	.	Atlas-SNP
CCDC17	149483	hgsc.bcm.edu	hg19	1	46087108	46087108	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	CCDC17	NM_001114938	exon10	c.C1233T	p.S411S	AATCCAGGAAGCC	.	234.0	84.0	250.0	0.0	.	54	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65305399	65305399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	JAK1,NS,carcinoma,0,2	JAK1	NM_002227	exon20	c.T2729C	p.L910P	GGCTTCAGAGATT	.	78.0	24.0	99.0	0.0	.	209	.	.	Atlas-SNP
MAN1A2	10905	hgsc.bcm.edu	hg19	1	117948198	117948198	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	MAN1A2	NM_006699	exon3	c.A586T	p.R196W	AACTATAGGACAT	.	628.0	216.0	586.0	1.0	.	50	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144916634	144916634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	PDE4DIP	NM_001002811	exon9	c.A2210G	p.K737R	TGTTCCTTCTGCC	.	133.0	19.0	125.0	0.0	.	817	.	.	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	hg19	1	157509048	157509048	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	FCRL5	NM_031281	exon7	c.C1230G	p.I410M	GTACAGGATGGGG	.	82.0	22.0	75.0	0.0	.	177	.	.	Atlas-SNP
OR6P1	128366	hgsc.bcm.edu	hg19	1	158532619	158532619	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	OR6P1	NM_001160325	exon1	c.A776C	p.Y259S	CGTGCATAGGTGA	.	119.0	40.0	103.0	0.0	.	47	.	.	Atlas-SNP
SDCCAG8	10806	hgsc.bcm.edu	hg19	1	243434288	243434288	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SDCCAG8	NM_006642	exon3	c.C229G	p.L77V	AATCAGCTCAAAG	.	226.0	75.0	225.0	0.0	.	73	.	.	Atlas-SNP
TMEM214	54867	hgsc.bcm.edu	hg19	2	27260542	27260542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	TMEM214	NM_017727	exon9	c.C1124A	p.P375H	CCACCCCTAGCTG	.	122.0	41.0	98.0	0.0	.	41	.	.	Atlas-SNP
CAPN14	440854	hgsc.bcm.edu	hg19	2	31414917	31414917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	CAPN14	NM_001145122	exon11	c.G1162A	p.E388K	CCTCCTCGGGCCT	.	96.0	41.0	88.0	0.0	.	36	.	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31625953	31625953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	XDH	NM_000379	exon3	c.T158C	p.V53A	AGCATCACTGTGC	.	66.0	20.0	59.0	0.0	.	191	.	.	Atlas-SNP
SIX2	10736	hgsc.bcm.edu	hg19	2	45233483	45233483	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SIX2	NM_016932	exon2	c.C702T	p.S234S	CGGCGGGCTGAGG	.	75.0	22.0	54.0	0.0	.	39	.	.	Atlas-SNP
WDR33	55339	hgsc.bcm.edu	hg19	2	128466455	128466455	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	WDR33	NM_018383	exon21	c.G3577T	p.E1193X	AATGTTCATGACC	.	64.0	27.0	50.0	0.0	.	136	.	.	Atlas-SNP
COL4A4	1286	hgsc.bcm.edu	hg19	2	227924168	227924168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	COL4A4	NM_000092	exon28	c.C2336A	p.P779Q	ATCCCTGGCACTC	.	179.0	61.0	190.0	0.0	.	215	.	.	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	hg19	3	1367631	1367631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	CNTN6,NS,carcinoma,0,1	CNTN6	NM_014461	exon9	c.C1079A	p.P360Q	TCAACCCAGAGGT	.	104.0	26.0	117.0	0.0	.	245	.	.	Atlas-SNP
IQSEC1	9922	hgsc.bcm.edu	hg19	3	12963694	12963694	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	IQSEC1	NM_014869	exon5	c.C1821A	p.A607A	CCTGAGGGCCTCA	.	77.0	16.0	80.0	0.0	.	88	.	.	Atlas-SNP
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37402755	37402755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	GOLGA4	NM_002078	exon23	c.A6685G	p.I2229V	AGTGGTATCTTCT	.	119.0	37.0	107.0	0.0	.	173	.	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38159099	38159099	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	DLEC1	NM_007337	exon32	c.T4482C	p.S1494S	CTGCTCTGGGGTG	.	126.0	27.0	120.0	0.0	.	278	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266110	41266110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.A107C	p.H36P	GAATCCATTCTGG	.	175.0	52.0	158.0	0.0	.	4904	.	.	Atlas-SNP
TRIM42	287015	hgsc.bcm.edu	hg19	3	140401928	140401928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	TRIM42	NM_152616	exon2	c.C966A	p.D322E	CCACGACACCATT	.	130.0	42.0	140.0	0.0	.	143	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5664973	5664973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	EVC2	NM_147127	exon9	c.G1006A	p.V336I	GCCAAACCTTCAG	.	78.0	19.0	87.0	0.0	.	202	.	.	Atlas-SNP
REST	5978	hgsc.bcm.edu	hg19	4	57797002	57797002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	REST	NM_001193508	exon4	c.G1978A	p.G660R	CAGGAGGGGCCTG	.	113.0	36.0	105.0	0.0	.	104	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88537513	88537513	+	Missense_Mutation	SNP	A	A	C	rs112275895		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	DSPP	NM_014208	exon5	c.A3699C	p.E1233D	CAATGAAAGCAGC	.	362.0	48.0	298.0	0.0	.	174	.	A|0.500;C|0.500	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	hg19	4	138452132	138452132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	PCDH18	NM_019035	exon1	c.G1111A	p.E371K	CCCCTTCAAAAAT	.	238.0	77.0	207.0	0.0	.	229	.	.	Atlas-SNP
ALDH7A1	501	hgsc.bcm.edu	hg19	5	125918580	125918580	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ALDH7A1	NM_001202404	exon5	c.A561G	p.L187L	CCTTGATAAACCA	.	325.0	172.0	267.0	0.0	.	57	.	.	Atlas-SNP
POM121L2	94026	hgsc.bcm.edu	hg19	6	27279335	27279335	+	Silent	SNP	G	G	A	rs149082261	bycluster;by1000genomes;alternate_allele	TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	POM121L2	NM_033482	exon1	c.C615T	p.L205L	AGAAGTGAGGGTT	.	67.0	40.0	37.0	0.0	.	61	.	G|0.999;T|0.001	Atlas-SNP
RGL2	5863	hgsc.bcm.edu	hg19	6	33259901	33259901	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	RGL2	NM_004761	exon18	c.A2312C	p.K771T	GCAATCTTCCTCC	.	107.0	22.0	82.0	0.0	.	58	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	72806711	72806711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	RIMS1,NS,carcinoma,0,1	RIMS1	NM_014989	exon3	c.C305A	p.A102E	AAGAAGCGCGGCG	.	119.0	63.0	204.0	0.0	.	278	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75904605	75904605	+	Silent	SNP	T	T	C	rs201454637	bycluster	TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	COL12A1	NM_004370	exon3	c.A132G	p.S44S	TGCCCATGACATA	.	61.0	33.0	72.0	0.0	.	385	.	T|0.999;C|0.001	Atlas-SNP
NOD1	10392	hgsc.bcm.edu	hg19	7	30492539	30492539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	NOD1	NM_006092	exon6	c.A494G	p.E165G	ACCAGCTCCATGA	.	67.0	32.0	65.0	0.0	.	79	.	.	Atlas-SNP
ACHE	43	hgsc.bcm.edu	hg19	7	100491063	100491063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ACHE	NM_000665	exon2	c.A791T	p.N264I	GGTCCATTGGGGG	.	55.0	23.0	34.0	0.0	.	80	.	.	Atlas-SNP
SLC13A4	26266	hgsc.bcm.edu	hg19	7	135370360	135370360	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SLC13A4	NM_012450	exon14	c.C1515G	p.T505T	CAGCAGGGTGACA	.	138.0	33.0	104.0	0.0	.	56	.	.	Atlas-SNP
ZNF282	8427	hgsc.bcm.edu	hg19	7	148892729	148892729	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ZNF282	NM_003575	exon1	c.G48A	p.Q16Q	CATCCAGGGCCTG	.	150.0	73.0	118.0	0.0	.	42	.	.	Atlas-SNP
ASIC3	9311	hgsc.bcm.edu	hg19	7	150745974	150745974	+	Missense_Mutation	SNP	T	T	C	rs143427620	bycluster	TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	.	NM_020322	exon1	c.T2C	p.M1T	TGGCCATGAAGCC	.	99.0	15.0	81.0	0.0	.	.	.	T|1.000;C|0.000	Atlas-SNP
WDR60	55112	hgsc.bcm.edu	hg19	7	158705686	158705686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	WDR60	NM_018051	exon13	c.A1601T	p.Q534L	ATGTTCAGTGTAA	.	189.0	81.0	134.0	0.0	.	94	.	.	Atlas-SNP
FAM92A1	137392	hgsc.bcm.edu	hg19	8	94730901	94730901	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	FAM92A1	NM_145269	exon6	c.544-2A>G	.	TTTTTTAGACTAT	.	249.0	81.0	97.0	0.0	.	22	.	.	Atlas-SNP
SNX31	169166	hgsc.bcm.edu	hg19	8	101612592	101612592	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SNX31	NM_152628	exon9	c.A759G	p.E253E	ACTGTCTTCTTTC	.	215.0	55.0	103.0	0.0	.	66	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	434955	434955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	DOCK8	NM_203447	exon39	c.G5059A	p.V1687M	CTGCCCGTGGGCA	.	43.0	15.0	49.0	0.0	.	401	.	.	Atlas-SNP
ZFAND4	93550	hgsc.bcm.edu	hg19	10	46121665	46121665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	.	NM_001128324	exon7	c.A1606G	p.K536E	ATCTTTTCCCAAG	.	132.0	43.0	151.0	0.0	.	.	.	.	Atlas-SNP
MYPN	84665	hgsc.bcm.edu	hg19	10	69926386	69926386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	MYPN	NM_032578	exon10	c.G1936A	p.V646M	TCCCCCGTGAAAG	.	151.0	19.0	163.0	0.0	.	189	.	.	Atlas-SNP
CRTAC1	55118	hgsc.bcm.edu	hg19	10	99696049	99696049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	CRTAC1	NM_001206528	exon3	c.G299A	p.R100H	GAGCTGCGCTCAT	.	75.0	25.0	81.0	0.0	.	86	.	.	Atlas-SNP
CALHM2	51063	hgsc.bcm.edu	hg19	10	105207130	105207130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	CALHM2	NM_015916	exon4	c.T751C	p.F251L	AGCCAAAGAAGCG	.	107.0	8.0	106.0	0.0	.	30	.	.	Atlas-SNP
COL17A1	1308	hgsc.bcm.edu	hg19	10	105803274	105803274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	COL17A1	NM_000494	exon35	c.C2500G	p.P834A	CTGGAGGTCCTGG	.	188.0	14.0	227.0	0.0	.	149	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62290619	62290619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	AHNAK	NM_001620	exon5	c.C11270T	p.P3757L	ACTTTGGGGCCCT	.	89.0	29.0	85.0	0.0	.	532	.	.	Atlas-SNP
STIP1	10963	hgsc.bcm.edu	hg19	11	63965043	63965043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	STIP1	NM_006819	exon7	c.G878A	p.R293Q	AAAACCGAGAAGA	.	111.0	14.0	81.0	0.0	.	63	.	.	Atlas-SNP
SYVN1	84447	hgsc.bcm.edu	hg19	11	64898776	64898776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SYVN1	NM_172230	exon8	c.T727C	p.F243L	TGGCAAAGAGTGG	.	127.0	41.0	120.0	0.0	.	55	.	.	Atlas-SNP
PRCP	5547	hgsc.bcm.edu	hg19	11	82536165	82536165	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	PRCP	NM_005040	exon10	c.1275-1G>A	.	CCATTGCTGCAAG	.	58.0	15.0	71.0	0.0	.	69	.	.	Atlas-SNP
C11orf73	51501	hgsc.bcm.edu	hg19	11	86017465	86017465	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	C11orf73	NM_016401	exon2	c.T209G	p.L70R	AACTCCTAGGATT	.	72.0	29.0	70.0	0.0	.	9	.	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26731667	26731667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ITPR2	NM_002223	exon34	c.A4609G	p.I1537V	TTCTGATACAGGA	.	115.0	38.0	113.0	0.0	.	270	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46246408	46246408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ARID2	NM_152641	exon15	c.C4502T	p.S1501F	TATCATCTGACGT	.	189.0	62.0	161.0	0.0	.	311	.	.	Atlas-SNP
WNT10B	7480	hgsc.bcm.edu	hg19	12	49364298	49364298	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	WNT10B	NM_003394	exon2	c.C15T	p.P5P	CGGCCGGGGCTCC	.	398.0	128.0	388.0	0.0	.	41	.	.	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	hg19	12	56488188	56488188	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ERBB3	NM_001982	exon15	c.C1707A	p.G569G	TCAGGGCTCTGAT	.	24.0	7.0	37.0	0.0	.	350	.	.	Atlas-SNP
PIP4K2C	79837	hgsc.bcm.edu	hg19	12	57995105	57995105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	PIP4K2C	NM_001146258	exon9	c.C1159A	p.H387N	GCAGCTCATGCAG	.	119.0	31.0	129.0	0.0	.	50	.	.	Atlas-SNP
IFNG	3458	hgsc.bcm.edu	hg19	12	68551852	68551852	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	IFNG	NM_000619	exon3	c.G207A	p.Q69Q	TTGGCTCTGCATT	.	79.0	20.0	78.0	0.0	.	38	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117723914	117723914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	NOS1	NM_000620	exon6	c.C1285G	p.L429V	CCTGCAGCTTGGA	.	79.0	32.0	77.0	0.0	.	240	.	.	Atlas-SNP
GPR183	1880	hgsc.bcm.edu	hg19	13	99947896	99947896	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	GPR183	NM_004951	exon2	c.C504T	p.I168I	AGGGTTGATGAGG	.	119.0	25.0	95.0	0.0	.	38	.	.	Atlas-SNP
OR10G2	26534	hgsc.bcm.edu	hg19	14	22102622	22102622	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	OR10G2	NM_001005466	exon1	c.A377C	p.D126A	TACCTGTCATAGG	.	259.0	76.0	302.0	0.0	.	35	.	.	Atlas-SNP
SPATA7	55812	hgsc.bcm.edu	hg19	14	88892812	88892812	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SPATA7	NM_018418	exon6	c.C609G	p.P203P	AAGGCCCAGAAGC	.	134.0	35.0	144.0	0.0	.	58	.	.	Atlas-SNP
BLM	641	hgsc.bcm.edu	hg19	15	91358483	91358483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	BLM	NM_000057	exon22	c.C4228A	p.L1410I	CCGTTTCTTAAGC	.	89.0	10.0	89.0	0.0	.	122	.	.	Atlas-SNP
ADAMTS17	170691	hgsc.bcm.edu	hg19	15	100514721	100514721	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ADAMTS17	NM_139057	exon22	c.C3174T	p.C1058C	GACCCGGCAATAT	.	84.0	26.0	95.0	0.0	.	127	.	.	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	hg19	16	1306936	1306936	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	TPSD1	NM_012217	exon3	c.G393T	p.L131L	CGCCCTGCTGGAG	.	293.0	47.0	266.0	0.0	.	47	.	.	Atlas-SNP
PRKCB	5579	hgsc.bcm.edu	hg19	16	24202547	24202547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	PRKCB	NM_212535	exon16	c.A1859T	p.K620I	AGCCAAAAGCTGT	.	101.0	37.0	112.0	0.0	.	383	.	.	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	hg19	16	31409166	31409166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ITGAD	NM_005353	exon5	c.G363C	p.K121N	CTCAAAGGGTTCC	.	36.0	13.0	41.0	0.0	.	154	.	.	Atlas-SNP
HSF4	3299	hgsc.bcm.edu	hg19	16	67201742	67201742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	HSF4	NM_001040667	exon11	c.C974A	p.P325H	CACTGCCTGTGGC	.	95.0	4.0	106.0	0.0	.	33	.	.	Atlas-SNP
CTRL	1506	hgsc.bcm.edu	hg19	16	67963973	67963973	+	Missense_Mutation	SNP	C	C	T	rs142873279	bycluster;byfrequency;alternate_allele	TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	CTRL	NM_001907	exon7	c.G659A	p.C220Y	TTCTGGCAGACAA	.	112.0	37.0	107.0	0.0	.	11	.	C|0.999;A|0.001	Atlas-SNP
SENP3	26168	hgsc.bcm.edu	hg19	17	7466636	7466636	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SENP3	NM_015670	exon2	c.G243A	p.E81E	AGAAGAGGAGGAG	.	117.0	6.0	98.0	0.0	.	18	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27442455	27442455	+	Silent	SNP	C	C	T	rs368144764		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	MYO18A	NM_078471	exon13	c.G2232A	p.P744P	CAGTTTCGGGCCT	.	66.0	23.0	67.0	0.0	.	217	.	.	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	hg19	17	39274487	39274487	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	KRTAP4-11	NM_033059	exon1	c.C81A	p.P27P	GCAGCTGGGGCGG	.	66.0	27.0	72.0	0.0	.	94	.	.	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	hg19	17	39274488	39274488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	KRTAP4-11	NM_033059	exon1	c.C80A	p.P27H	CAGCTGGGGCGGC	.	67.0	27.0	71.0	0.0	.	94	.	.	Atlas-SNP
RUNDC3A	10900	hgsc.bcm.edu	hg19	17	42389993	42389993	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	RUNDC3A_ENST00000225441,colon,carcinoma,0,2	RUNDC3A	NM_001144825	exon2	c.C153T	p.I51I	GCCCATCGATGAC	.	38.0	14.0	49.0	0.0	.	30	.	.	Atlas-SNP
SPATA20	64847	hgsc.bcm.edu	hg19	17	48626198	48626198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SPATA20	NM_022827	exon5	c.A389G	p.H130R	GGTGCCACATGAT	.	71.0	30.0	72.0	0.0	.	59	.	.	Atlas-SNP
POLG2	11232	hgsc.bcm.edu	hg19	17	62488797	62488797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	POLG2	NM_007215	exon3	c.A782G	p.Q261R	CACCACTGGAGTC	.	1900.0	604.0	1769.0	0.0	.	29	.	.	Atlas-SNP
ATP5A1	498	hgsc.bcm.edu	hg19	18	43667308	43667308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ATP5A1	NM_004046	exon7	c.A950G	p.Q317R	TTGACCTGTTTGG	.	222.0	97.0	160.0	0.0	.	52	.	.	Atlas-SNP
ATP5A1	498	hgsc.bcm.edu	hg19	18	43667311	43667311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ATP5A1	NM_004046	exon7	c.A947G	p.K316R	ACCTGTTTGGATA	.	219.0	93.0	159.0	0.0	.	52	.	.	Atlas-SNP
SMAD4	4089	hgsc.bcm.edu	hg19	18	48593405	48593405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	SMAD4,colon,carcinoma,0,7	SMAD4	NM_005359	exon10	c.G1156A	p.G386S	GGCAAAGGTGTGC	.	142.0	42.0	134.0	0.0	.	822	.	.	Atlas-SNP
TXNL1	9352	hgsc.bcm.edu	hg19	18	54291666	54291666	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	TXNL1	NM_004786	exon3	c.A222T	p.S74S	TGTTGCTGATATA	.	91.0	20.0	81.0	0.0	.	30	.	.	Atlas-SNP
SERPINB7	8710	hgsc.bcm.edu	hg19	18	61449699	61449699	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SERPINB7	NM_001261830	exon2	c.C93G	p.S31S	CTTTTCCTCTCTG	.	108.0	27.0	73.0	0.0	.	66	.	.	Atlas-SNP
CREB3L3	84699	hgsc.bcm.edu	hg19	19	4171378	4171378	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	CREB3L3	NM_001271995	exon9	c.973-2A>G	.	TCCACCAGGTCCT	.	78.0	21.0	66.0	0.0	.	53	.	.	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	hg19	19	5131976	5131976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	KDM4B	NM_015015	exon13	c.T1864C	p.S622P	ACCCGGTCCCCAC	.	259.0	80.0	241.0	0.0	.	120	.	.	Atlas-SNP
SLC35E1	79939	hgsc.bcm.edu	hg19	19	16678874	16678874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SLC35E1	NM_024881	exon3	c.G599T	p.C200F	GAGAAGCACAGCG	.	55.0	14.0	58.0	0.0	.	48	.	.	Atlas-SNP
ZNF527	84503	hgsc.bcm.edu	hg19	19	37880628	37880628	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ZNF527	NM_032453	exon5	c.T1677G	p.C559W	TGAATGTGGGAAG	.	48.0	20.0	61.0	0.0	.	78	.	.	Atlas-SNP
ZNF527	84503	hgsc.bcm.edu	hg19	19	37880629	37880629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ZNF527	NM_032453	exon5	c.G1678T	p.G560W	GAATGTGGGAAGG	.	47.0	19.0	61.0	0.0	.	78	.	.	Atlas-SNP
CKM	1158	hgsc.bcm.edu	hg19	19	45821217	45821217	+	Missense_Mutation	SNP	C	C	T	rs1803285		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	CKM,colon,carcinoma,0,1	CKM	NM_001824	exon3	c.G214A	p.V72M	AGCCCACGGTCAT	.	94.0	36.0	83.0	0.0	.	40	.	.	Atlas-SNP
ZNF761	388561	hgsc.bcm.edu	hg19	19	53959745	53959745	+	Missense_Mutation	SNP	T	T	G	rs146356671	bycluster;byfrequency;alternate_allele	TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ZNF761	NM_001008401	exon7	c.T1984G	p.Y662D	AAACCTTACAAGT	.	87.0	33.0	77.0	0.0	.	104	.	T|0.999;C|0.001	Atlas-SNP
SLC4A11	83959	hgsc.bcm.edu	hg19	20	3214949	3214949	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SLC4A11	NM_001174090	exon5	c.A432C	p.L144F	GTTCTTTAACTTC	.	92.0	24.0	87.0	0.0	.	188	.	.	Atlas-SNP
ADIG	149685	hgsc.bcm.edu	hg19	20	37209925	37209925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ADIG	NM_001018082	exon1	c.A32G	p.D11G	TGAACGACCTCAC	.	108.0	27.0	118.0	0.0	.	16	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61528235	61528235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	DIDO1,NS,malignant_melanoma,0,1	DIDO1	NM_080797	exon7	c.C1702T	p.P568S	TCTTTGGCACGAG	.	156.0	47.0	135.0	0.0	.	321	.	.	Atlas-SNP
APP	351	hgsc.bcm.edu	hg19	21	27372473	27372473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	APP	NM_001204302	exon7	c.C890A	p.T297K	GGCCCCGTCTCGG	.	73.0	18.0	94.0	0.0	.	90	.	.	Atlas-SNP
SUSD2	56241	hgsc.bcm.edu	hg19	22	24581750	24581750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SUSD2	NM_019601	exon8	c.C1192T	p.R398C	CCGTTCCGCACGC	.	47.0	11.0	61.0	0.0	.	68	.	.	Atlas-SNP
ZBED4	9889	hgsc.bcm.edu	hg19	22	50279247	50279247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ZBED4	NM_014838	exon2	c.A1937T	p.E646V	CCAATGAGAAGTT	.	86.0	24.0	74.0	0.0	.	102	.	.	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	hg19	X	41048571	41048571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	USP9X	NM_001039591	exon26	c.G3820A	p.G1274S	AATGCAGGCAATG	.	227.0	11.0	116.0	0.0	.	385	.	.	Atlas-SNP
DRP2	1821	hgsc.bcm.edu	hg19	X	100507604	100507604	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	DRP2	NM_001939	exon17	c.C1876T	p.L626L	CGGAGTCTGAAGC	.	229.0	162.0	171.0	1.0	.	98	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9655	9655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	.	ENST00000362079	exon1	c.G449A	p.S150N	ACCATAGTCTAAT	.	47.0	28.0	14.0	0.0	.	.	.	.	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	hg19	6	76386867	76386867	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SENP6	NM_015571	exon14	c.1742delC	p.A581fs	.	.	282.0	72.0	605.0	0.0	.	189	.	.	Atlas-INDEL
ZNF469	84627	hgsc.bcm.edu	hg19	16	88498840	88498841	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ZNF469	NM_001127464	exon2	c.4878_4879insG	p.P1626fs	.	.	51.0	15.0	48.0	0.0	.	121	.	.	Atlas-INDEL
SENP6	26054	hgsc.bcm.edu	hg19	6	76386824	76386861	+	Frame_Shift_Del	DEL	TTAATGAAATTGGTATAAAGAATAACATCTCCAATTTT	TTAATGAAATTGGTATAAAGAATAACATCTCCAATTTT	-	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	TTAATGAAATTGGTATAAAGAATAACATCTCCAATTTT	TTAATGAAATTGGTATAAAGAATAACATCTCCAATTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	SENP6	NM_015571	exon14	c.1699_1736del	p.567_579del	.	.	218.0	25.0	436.0	0.0	.	189	.	.	Atlas-INDEL
MPHOSPH10	10199	hgsc.bcm.edu	hg19	2	71361819	71361824	+	In_Frame_Del	DEL	AGTGAC	AGTGAC	-	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	AGTGAC	AGTGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	MPHOSPH10	NM_005791	exon4	c.989_994del	p.330_332del	.	.	273.0	60.0	301.0	0.0	.	81	.	.	Atlas-INDEL
TMEM56	148534	hgsc.bcm.edu	hg19	1	95609466	95609466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	TMEM56	NM_001199679	exon2	c.8delT	p.I3fs	.	.	117.0	25.0	111.0	0.0	.	24	.	.	Atlas-INDEL
ACAD10	80724	hgsc.bcm.edu	hg19	12	112147442	112147443	+	Frame_Shift_Ins	INS	-	-	AACAAATCTAA	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	ACAD10	NM_001136538	exon5	c.644_645insAACAAATCTAA	p.G215fs	.	.	118.0	13.0	88.0	0.0	.	93	.	.	Atlas-INDEL
OR2T6	254879	hgsc.bcm.edu	hg19	1	248551453	248551453	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	OR2T6	NM_001005471	exon1	c.543delA	p.A181fs	.	.	138.0	30.0	121.0	0.0	.	101	.	.	Atlas-INDEL
METTL18	92342	hgsc.bcm.edu	hg19	1	169761806	169761807	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AACD-01A-11D-A40R-10	TCGA-DD-AACD-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c59fe787-da95-4adc-aac0-30431d975acb	9f8086f5-832e-4885-8836-e959e0921ea7	.	METTL18	NM_033418	exon2	c.1031_1032insA	p.R344fs	.	.	339.0	107.0	298.0	0.0	.	23	.	.	Atlas-INDEL