Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm RPS6KA1 6195 hgsc.bcm.edu hg19 1 26900660 26900660 + Silent SNP C C A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . RPS6KA1 NM_001006665 exon21 c.C2203A p.R735R CAGCGGCGAGTGA . 44.0 15.0 58.0 0.0 . 65 . . Atlas-SNP STIL 6491 hgsc.bcm.edu hg19 1 47746604 47746604 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . STIL NM_003035 exon12 c.C1526T p.P509L TAGGCAGGTGGCT . 119.0 50.0 123.0 0.0 . 91 . . Atlas-SNP ITLN1 55600 hgsc.bcm.edu hg19 1 160849202 160849202 + Missense_Mutation SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ITLN1 NM_017625 exon7 c.G688A p.E230K TGAATTCCCCTGA . 100.0 32.0 82.0 0.0 . 45 . . Atlas-SNP RGS5 8490 hgsc.bcm.edu hg19 1 163117258 163117258 + Missense_Mutation SNP C C A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . RGS5 NM_001254749 exon5 c.G432T p.M144I GTTCTTCATTGTG . 152.0 52.0 117.0 0.0 . 29 . . Atlas-SNP PBX1 5087 hgsc.bcm.edu hg19 1 164769105 164769105 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . PBX1 NM_001204963 exon4 c.G680A p.R227H TCCTGCGTTCCCG . 107.0 32.0 106.0 0.0 . 60 . . Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186304629 186304629 + Silent SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TPR NM_003292 exon34 c.G4752A p.R1584R TCCATTCCTTTGT . 76.0 9.0 94.0 0.0 . 441 . . Atlas-SNP ASPM 259266 hgsc.bcm.edu hg19 1 197065148 197065148 + Silent SNP A A G novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ASPM NM_018136 exon19 c.T8967C p.Y2989Y TTTGGTATAGAAG . 108.0 42.0 81.0 0.0 . 444 . . Atlas-SNP NUAK2 81788 hgsc.bcm.edu hg19 1 205277742 205277742 + Silent SNP C C A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . NUAK2 NM_030952 exon3 c.G471T p.R157R GATCTGCCGGAAG . 123.0 53.0 92.0 0.0 . 107 . . Atlas-SNP OR14A16 284532 hgsc.bcm.edu hg19 1 247978833 247978833 + Missense_Mutation SNP A A T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . OR14A16 NM_001001966 exon1 c.T199A p.L67M GATCCAAGAAAGA . 287.0 45.0 205.0 0.0 . 90 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21256268 21256268 + Nonsense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . APOB NM_000384 exon9 c.C1027T p.Q343X CTCTCTGGATATT . 62.0 28.0 76.0 0.0 . 761 . . Atlas-SNP IMP4 92856 hgsc.bcm.edu hg19 2 131103253 131103253 + Silent SNP C C T rs201275845 TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . IMP4 NM_033416 exon5 c.C420T p.H140H CGTTCACGAGCAT . 59.0 25.0 66.0 0.0 . 35 . C|0.999;T|0.001 Atlas-SNP FAM168B 130074 hgsc.bcm.edu hg19 2 131812878 131812878 + Missense_Mutation SNP T T A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . FAM168B NM_001009993 exon5 c.A442T p.M148L CCACCATGCCCAT . 79.0 37.0 103.0 0.0 . 15 . . Atlas-SNP PKP4 8502 hgsc.bcm.edu hg19 2 159481723 159481723 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . PKP4 NM_001005476 exon7 c.G937A p.G313R AGAGTGGGGTCCC . 110.0 39.0 122.0 0.0 . 133 . . Atlas-SNP TANC1 85461 hgsc.bcm.edu hg19 2 160027239 160027239 + Missense_Mutation SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TANC1 NM_033394 exon10 c.C1274T p.S425F TCATTTCCAAGTT . 256.0 127.0 234.0 1.0 . 157 . . Atlas-SNP ZAK 0 hgsc.bcm.edu hg19 2 174047653 174047653 + Missense_Mutation SNP A A G novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ZAK NM_133646 exon4 c.A319G p.I107V GATCACATTATGA . 439.0 174.0 443.0 1.0 . 62 . . Atlas-SNP SCRN3 79634 hgsc.bcm.edu hg19 2 175292518 175292518 + Silent SNP A A G novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . SCRN3 NM_024583 exon8 c.A1170G p.Q390Q CCTTCAAAACAAG . 451.0 126.0 410.0 0.0 . 76 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196619135 196619135 + Missense_Mutation SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . DNAH7 NM_018897 exon63 c.C11690A p.T3897K GGAATTGTGTATT . 144.0 43.0 153.0 0.0 . 512 . . Atlas-SNP NRP2 8828 hgsc.bcm.edu hg19 2 206562324 206562324 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . NRP2 NM_201279 exon2 c.G130A p.G44S TCTCCCGGTTACC . 115.0 51.0 150.0 0.0 . 179 . . Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230656743 230656743 + Silent SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TRIP12 NM_004238 exon28 c.G4029A p.R1343R CTGCAGCCTGTGT . 300.0 133.0 250.0 1.0 . 207 . . Atlas-SNP EPM2AIP1 9852 hgsc.bcm.edu hg19 3 37034022 37034022 + Missense_Mutation SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . EPM2AIP1 NM_014805 exon1 c.G547A p.A183T CAAAAGCCTGGTC . 61.0 11.0 93.0 0.0 . 47 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266098 41266098 + Missense_Mutation SNP A A G rs121913396 bycluster TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 CTNNB1,gallbladder,other,+1,128 CTNNB1 NM_001098209 exon3 c.A95G p.D32G ACCTGGACTCTGG . 138.0 35.0 165.0 1.0 . 4904 . . Atlas-SNP TRAK1 22906 hgsc.bcm.edu hg19 3 42265035 42265035 + Missense_Mutation SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TRAK1 NM_001042646 exon16 c.G2668T p.V890L GGCCTGGTACCTG . 64.0 34.0 87.0 0.0 . 188 . . Atlas-SNP FAM19A1 407738 hgsc.bcm.edu hg19 3 68466449 68466449 + Silent SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . FAM19A1 NM_213609 exon3 c.G138A p.V46V TGAAGTGATAGCA . 108.0 13.0 126.0 0.0 . 58 . . Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77671422 77671422 + Missense_Mutation SNP C C A rs376068100 alternate_allele TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 ROBO2_ENST00000487694,colon,carcinoma,0,4 ROBO2 NM_002942 exon23 c.C3599A p.P1200Q TTCCACCGTTAGG . 149.0 77.0 124.0 1.0 . 527 . . Atlas-SNP SLCO2A1 6578 hgsc.bcm.edu hg19 3 133674014 133674014 + Missense_Mutation SNP C C T rs148547180 TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 SLCO2A1,NS,carcinoma,0,1 SLCO2A1 NM_005630 exon4 c.G421A p.E141K AGAGCTCGGCCTG . 80.0 25.0 76.0 0.0 . 72 . C|1.000;T|0.000 Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195507945 195507945 + Silent SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . MUC4 NM_018406 exon2 c.C10506A p.T3502T AGTGCTGGTGTCA . 216.0 38.0 244.0 0.0 . 1505 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195507946 195507946 + Missense_Mutation SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . MUC4 NM_018406 exon2 c.C10505A p.T3502N GTGCTGGTGTCAC . 213.0 36.0 243.0 0.0 . 1505 . . Atlas-SNP STK32B 55351 hgsc.bcm.edu hg19 4 5461929 5461929 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 STK32B,colon,carcinoma,0,1 STK32B NM_018401 exon9 c.G883A p.A295T AAGAAGGCACTGA . 67.0 21.0 99.0 0.0 . 87 . . Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114208800 114208800 + Missense_Mutation SNP A A C novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ANK2 NM_001148 exon19 c.A2119C p.K707Q GAAGATAAAGTGA . 41.0 16.0 81.0 0.0 . 576 . . Atlas-SNP FBXL7 23194 hgsc.bcm.edu hg19 5 15928473 15928473 + Missense_Mutation SNP A A T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . FBXL7 NM_012304 exon3 c.A602T p.D201V TCACAGACCGAGG . 144.0 67.0 113.0 0.0 . 138 . . Atlas-SNP RNF180 285671 hgsc.bcm.edu hg19 5 63510007 63510007 + Missense_Mutation SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . RNF180 NM_001113561 exon4 c.G854T p.S285I CATCCAGTTTTGA . 102.0 22.0 108.0 0.0 . 94 . . Atlas-SNP MAST4 375449 hgsc.bcm.edu hg19 5 66398386 66398386 + Missense_Mutation SNP T T A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . MAST4 NM_001164664 exon9 c.T1093A p.C365S GCCTGCTGTGACC . 186.0 42.0 233.0 0.0 . 218 . . Atlas-SNP C5orf47 133491 hgsc.bcm.edu hg19 5 173416302 173416302 + Silent SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . C5orf47 NM_001144954 exon1 c.G36A p.S12S GGACTCGGCGCGC . 93.0 22.0 111.0 0.0 . 14 . . Atlas-SNP CD83 9308 hgsc.bcm.edu hg19 6 14118268 14118268 + Missense_Mutation SNP A A T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . CD83 NM_004233 exon2 c.A125T p.Q42L ATCCGCAGGTTCC . 68.0 25.0 51.0 0.0 . 23 . . Atlas-SNP ZBTB12 221527 hgsc.bcm.edu hg19 6 31868141 31868141 + Silent SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ZBTB12 NM_181842 exon2 c.G942A p.G314G GCTGCCCCCCGCC . 43.0 9.0 33.0 0.0 . 25 . . Atlas-SNP GRM4 2914 hgsc.bcm.edu hg19 6 34004308 34004308 + Missense_Mutation SNP C C G novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . GRM4 NM_000841 exon9 c.G1579C p.G527R GCTCACCCGGTTG . 71.0 17.0 61.0 0.0 . 317 . . Atlas-SNP TRERF1 55809 hgsc.bcm.edu hg19 6 42196221 42196221 + Silent SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TRERF1 NM_033502 exon18 c.C3465T p.P1155P CTTGATGGGTTTG . 100.0 30.0 65.0 0.0 . 124 . . Atlas-SNP TNRC18 84629 hgsc.bcm.edu hg19 7 5427597 5427597 + Missense_Mutation SNP T T C novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TNRC18 NM_001080495 exon5 c.A1858G p.K620E CGGGTTTCATGGT . 105.0 28.0 140.0 0.0 . 311 . . Atlas-SNP ANK1 286 hgsc.bcm.edu hg19 8 41542087 41542087 + Silent SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ANK1 NM_001142446 exon38 c.C4635T p.Y1545Y CAGCGAGTAGTCG . 73.0 48.0 46.0 0.0 . 497 . . Atlas-SNP XKR9 389668 hgsc.bcm.edu hg19 8 71646299 71646299 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . XKR9 NM_001011720 exon5 c.T762A p.C254X GTTTTGTACTTGT . 228.0 20.0 107.0 0.0 . 43 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113317133 113317133 + Missense_Mutation SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . CSMD3 NM_198123 exon52 c.C8083A p.P2695T TGCTTGGACATGT . 188.0 25.0 124.0 0.0 . 2325 . . Atlas-SNP DMRT1 1761 hgsc.bcm.edu hg19 9 842074 842074 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . DMRT1 NM_021951 exon1 c.G236A p.C79Y CACGCTGCAGGAA . 83.0 42.0 69.0 0.0 . 38 . . Atlas-SNP ELAVL2 1993 hgsc.bcm.edu hg19 9 23762193 23762193 + Missense_Mutation SNP T T C novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ELAVL2 NM_001171195 exon2 c.A40G p.T14A TGGCTGTGTTATT . 137.0 45.0 143.0 0.0 . 80 . . Atlas-SNP HINT2 84681 hgsc.bcm.edu hg19 9 35813496 35813496 + Silent SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . HINT2 NM_032593 exon3 c.C273A p.V91V AGGAATGACCAGG . 83.0 24.0 104.0 0.0 . 15 . . Atlas-SNP TRPM3 80036 hgsc.bcm.edu hg19 9 73151320 73151320 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TRPM3 NM_001007471 exon25 c.C4673T p.A1558V TGAGGGGCATTGA . 88.0 56.0 113.0 0.0 . 700 . . Atlas-SNP AGPAT2 10555 hgsc.bcm.edu hg19 9 139568320 139568320 + Missense_Mutation SNP C C A rs11545228 bycluster TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . AGPAT2 NM_006412 exon6 c.G721T p.V241F CAGGGACGTCCGC . 83.0 54.0 127.0 0.0 . 17 . C|1.000 Atlas-SNP ADARB2 105 hgsc.bcm.edu hg19 10 1405325 1405325 + Missense_Mutation SNP C C A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ADARB2 NM_018702 exon3 c.G975T p.K325N GGCCAGCTTCTTG . 29.0 11.0 25.0 0.0 . 95 . . Atlas-SNP PFKFB3 5209 hgsc.bcm.edu hg19 10 6262815 6262815 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . PFKFB3 NM_004566 exon8 c.G818A p.S273N TGTCCAGCCGGGG . 50.0 8.0 44.0 0.0 . 82 . . Atlas-SNP PSAP 5660 hgsc.bcm.edu hg19 10 73594188 73594188 + Missense_Mutation SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . PSAP NM_001042466 exon2 c.G115A p.A39T CGGACGCCGTCTT . 89.0 36.0 65.0 0.0 . 43 . . Atlas-SNP PDZD7 79955 hgsc.bcm.edu hg19 10 102770594 102770594 + Missense_Mutation SNP T T A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . PDZD7 NM_001195263 exon15 c.A2052T p.E684D TTCCTCTTCCGGG . 550.0 216.0 461.0 0.0 . 101 . . Atlas-SNP RPLP2 6181 hgsc.bcm.edu hg19 11 812569 812569 + Silent SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . RPLP2 NM_001004 exon4 c.G207T p.G69G TGGTGGGGCTGTA . 32.0 10.0 43.0 0.0 . 2 . . Atlas-SNP FOLH1 2346 hgsc.bcm.edu hg19 11 49214430 49214430 + Missense_Mutation SNP A A G novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . FOLH1 NM_004476 exon4 c.T428C p.L143S TCAAATAATGATG . 143.0 24.0 191.0 0.0 . 141 . . Atlas-SNP TNKS1BP1 85456 hgsc.bcm.edu hg19 11 57080662 57080662 + Silent SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TNKS1BP1 NM_033396 exon5 c.C1500T p.I500I TTCAGTGATGGGG . 52.0 10.0 73.0 0.0 . 148 . . Atlas-SNP MS4A6E 245802 hgsc.bcm.edu hg19 11 60107405 60107405 + Silent SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . MS4A6E NM_139249 exon3 c.C421T p.L141L GCTGTGCTGCAGT . 35.0 17.0 63.0 0.0 . 22 . . Atlas-SNP TEX40 25858 hgsc.bcm.edu hg19 11 64070996 64070996 + Missense_Mutation SNP T T A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . . NM_001039496 exon3 c.T395A p.M132K AGCACATGCCCCA . 56.0 20.0 68.0 0.0 . . . . Atlas-SNP CNTN5 53942 hgsc.bcm.edu hg19 11 100211261 100211261 + Missense_Mutation SNP T T C novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . CNTN5 NM_001243270 exon21 c.T2797C p.S933P AATGAGTCTTTCG . 141.0 43.0 171.0 0.0 . 324 . . Atlas-SNP KBTBD3 143879 hgsc.bcm.edu hg19 11 105923599 105923599 + Missense_Mutation SNP C C A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . KBTBD3 NM_152433 exon3 c.G1817T p.W606L GAAAACCATGGGT . 122.0 31.0 134.0 0.0 . 59 . . Atlas-SNP KBTBD3 143879 hgsc.bcm.edu hg19 11 105923600 105923600 + Missense_Mutation SNP A A T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . KBTBD3 NM_152433 exon3 c.T1816A p.W606R AAAACCATGGGTC . 123.0 31.0 134.0 0.0 . 59 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118374231 118374231 + Missense_Mutation SNP C C A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . MLL NM_001197104 exon27 c.C7624A p.L2542M AATGCCCTGAAAG . 73.0 24.0 111.0 0.0 . 548 . . Atlas-SNP TAS2R42 353164 hgsc.bcm.edu hg19 12 11339508 11339508 + Silent SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TAS2R42 NM_181429 exon1 c.G36A p.L12L TATTGCCAGAATC . 76.0 20.0 62.0 0.0 . 30 . . Atlas-SNP SP1 6667 hgsc.bcm.edu hg19 12 53775951 53775951 + Missense_Mutation SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . SP1 NM_138473 exon3 c.C220T p.P74S GAGTCACCCAATG . 54.0 10.0 57.0 0.0 . 57 . . Atlas-SNP HSP90B1 7184 hgsc.bcm.edu hg19 12 104327962 104327962 + Missense_Mutation SNP A A G novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . HSP90B1 NM_003299 exon5 c.A640G p.K214E ACTTCAAAACACA . 229.0 21.0 238.0 0.0 . 72 . . Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25283923 25283923 + Missense_Mutation SNP A A T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ATP12A NM_001185085 exon19 c.A2738T p.K913M GGGAGAAGGACTA . 94.0 20.0 84.0 0.0 . 172 . . Atlas-SNP VWA8 23078 hgsc.bcm.edu hg19 13 42385467 42385467 + Silent SNP A A G novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . . NM_015058 exon17 c.T1957C p.L653L CCGCTAATGATTG . 94.0 11.0 116.0 0.0 . . . . Atlas-SNP ING1 3621 hgsc.bcm.edu hg19 13 111371917 111371917 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ING1 NM_005537 exon2 c.G907A p.E303K AACCGTGAGAACG . 289.0 69.0 239.0 0.0 . 106 . . Atlas-SNP CUL4A 8451 hgsc.bcm.edu hg19 13 113882334 113882334 + Missense_Mutation SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . CUL4A NM_001008895 exon4 c.G413T p.C138F ACACGTGCTGGCA . 110.0 40.0 116.0 0.0 . 50 . . Atlas-SNP JKAMP 51528 hgsc.bcm.edu hg19 14 59953512 59953512 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 JKAMP_ENST00000356057,NS,carcinoma,0,2 JKAMP NM_016475 exon2 c.G86A p.G29E TATATGGAGAATG . 96.0 17.0 85.0 0.0 . 49 . . Atlas-SNP FLRT2 23768 hgsc.bcm.edu hg19 14 86089391 86089391 + Silent SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . FLRT2 NM_013231 exon2 c.G1533A p.E511E TTCAGAGGCCACC . 153.0 40.0 150.0 0.0 . 168 . . Atlas-SNP TMC3 342125 hgsc.bcm.edu hg19 15 81625501 81625501 + Silent SNP A A T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . TMC3 NM_001080532 exon22 c.T2562A p.P854P GAAAAGAGGTTCT . 115.0 14.0 135.0 0.0 . 112 . . Atlas-SNP ZSCAN2 54993 hgsc.bcm.edu hg19 15 85164886 85164886 + Missense_Mutation SNP C C A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ZSCAN2 NM_181877 exon3 c.C1460A p.S487Y GGAGCTCCAACCT . 78.0 10.0 65.0 0.0 . 43 . . Atlas-SNP CENPT 80152 hgsc.bcm.edu hg19 16 67862725 67862725 + Silent SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . CENPT NM_025082 exon14 c.G1302A p.E434E CAGAGGCTCTGCA . 69.0 17.0 62.0 0.0 . 26 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577095 7577095 + Missense_Mutation SNP G G C novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 TP53_ENST00000455263,NS,adenocarcinoma,-1,1 TP53 NM_000546 exon8 c.C843G p.D281E GCGCCGGTCTCTC . 64.0 40.0 89.0 0.0 . 33396 . . Atlas-SNP RPL19 6143 hgsc.bcm.edu hg19 17 37357506 37357506 + Missense_Mutation SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . RPL19 NM_000981 exon2 c.C46T p.R16C GTCCTCCGCTGTG . 66.0 11.0 50.0 0.0 . 18 . . Atlas-SNP ABCC3 8714 hgsc.bcm.edu hg19 17 48746279 48746279 + Missense_Mutation SNP A A C novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ABCC3 NM_003786 exon15 c.A1936C p.S646R CTGCACAGGTACC . 86.0 37.0 76.0 0.0 . 138 . . Atlas-SNP EXOC7 23265 hgsc.bcm.edu hg19 17 74093950 74093950 + Missense_Mutation SNP C C A rs117225564 bycluster;by1000genomes;alternate_allele TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . EXOC7 NM_001145298 exon5 c.G567T p.E189D CAGGTGCTCCAGG . 144.0 63.0 124.0 0.0 . 47 . C|0.999;T|0.001 Atlas-SNP RALBP1 10928 hgsc.bcm.edu hg19 18 9535711 9535711 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . RALBP1 NM_006788 exon10 c.G1744A p.E582K GAGCGCGAGGCCA . 87.0 22.0 103.0 0.0 . 48 . . Atlas-SNP SPIRE1 56907 hgsc.bcm.edu hg19 18 12464951 12464951 + Missense_Mutation SNP T T C novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . SPIRE1 NM_001128626 exon11 c.A1411G p.T471A GCAGCGTTTCTTC . 43.0 20.0 38.0 0.0 . 120 . . Atlas-SNP FAM210A 125228 hgsc.bcm.edu hg19 18 13681644 13681644 + Missense_Mutation SNP A A T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . . NM_001098801 exon3 c.T433A p.S145T CACCAGAAGTTAT . 162.0 48.0 189.0 0.0 . . . . Atlas-SNP TPGS1 91978 hgsc.bcm.edu hg19 19 519039 519039 + Silent SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . . NM_033513 exon2 c.G489A p.P163P GGCGCCGCTGCTG . 49.0 21.0 62.0 0.0 . . . . Atlas-SNP LPPR3 0 hgsc.bcm.edu hg19 19 815228 815228 + Missense_Mutation SNP A A G novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . . NM_001270366 exon4 c.T361C p.C121R AGTTGCAGCCGCC . 56.0 39.0 57.0 0.0 . . . . Atlas-SNP GTF2F1 2962 hgsc.bcm.edu hg19 19 6387475 6387475 + Missense_Mutation SNP T T C novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . GTF2F1 NM_002096 exon5 c.A422G p.H141R CAGTTGTGCACGG . 91.0 62.0 95.0 0.0 . 39 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9089258 9089258 + Missense_Mutation SNP A A T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . MUC16 NM_024690 exon1 c.T2557A p.S853T GAGTAGATGAAGA . 95.0 66.0 100.0 0.0 . 4315 . . Atlas-SNP ZNF726 730087 hgsc.bcm.edu hg19 19 24115522 24115522 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . . NM_001244038 exon4 c.A604T p.K202X TCCTACAAATGTA . 70.0 30.0 70.0 0.0 . . . . Atlas-SNP LILRA2 11027 hgsc.bcm.edu hg19 19 55086934 55086934 + Silent SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . LILRA2 NM_001130917 exon5 c.C867T p.H289H CTCCCACGGGGGC . 141.0 42.0 160.0 0.0 . 99 . . Atlas-SNP RPN2 6185 hgsc.bcm.edu hg19 20 35812641 35812641 + Silent SNP G G T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . RPN2 NM_002951 exon2 c.G72T p.T24T TCTGACGCCCACT . 145.0 25.0 137.0 0.0 . 45 . . Atlas-SNP EMILIN3 90187 hgsc.bcm.edu hg19 20 39992390 39992390 + Silent SNP C C A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 EMILIN3,caecum,carcinoma,0,1 EMILIN3 NM_052846 exon3 c.G402T p.T134T ATGGTCCGTGAGG . 125.0 22.0 121.0 0.0 . 63 . . Atlas-SNP PTPRT 11122 hgsc.bcm.edu hg19 20 40827954 40827954 + Missense_Mutation SNP T T A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . PTPRT NM_133170 exon17 c.A2474T p.K825I GTGGGTTTGTCGG . 128.0 16.0 136.0 0.0 . 372 . . Atlas-SNP NCOA5 57727 hgsc.bcm.edu hg19 20 44692024 44692024 + Missense_Mutation SNP C C T novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . NCOA5 NM_020967 exon7 c.G1125A p.M375I GCTCCTCATCAGC . 43.0 26.0 35.0 0.0 . 58 . . Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58489238 58489238 + Silent SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . SYCP2 NM_014258 exon10 c.C703T p.L235L GTGCCAGTTCTTG . 160.0 11.0 133.0 0.0 . 204 . . Atlas-SNP SRMS 6725 hgsc.bcm.edu hg19 20 62172284 62172284 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . SRMS NM_080823 exon8 c.C1354T p.P452S CCGCCGGGCAGGC . 47.0 7.0 45.0 0.0 . 48 . . Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 41416170 41416170 + Missense_Mutation SNP G G A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . DSCAM NM_001271534 exon31 c.C5218T p.P1740S CTGTGGGCCCAGC . 68.0 5.0 53.0 0.0 . 347 . . Atlas-SNP LIF 3976 hgsc.bcm.edu hg19 22 30640879 30640879 + Silent SNP C C T rs368278663 TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . LIF NM_002309 exon2 c.G63A p.A21A GCTCCCCGCCCCA . 127.0 6.0 125.0 0.0 . 18 . . Atlas-SNP NAP1L3 4675 hgsc.bcm.edu hg19 X 92927344 92927344 + Missense_Mutation SNP C C A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . NAP1L3 NM_004538 exon1 c.G960T p.K320N AACATTCTTTAAA . 117.0 37.0 212.0 0.0 . 81 . . Atlas-SNP ACACA 31 hgsc.bcm.edu hg19 17 35486338 35486338 + Frame_Shift_Del DEL T T - novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ACACA NM_198834 exon47 c.5898delG p.K1966fs . . 128.0 46.0 143.0 0.0 . 395 . . Atlas-INDEL PGLYRP2 114770 hgsc.bcm.edu hg19 19 15586526 15586526 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . PGLYRP2 NM_052890 exon2 c.956delG p.R319fs . . 64.0 17.0 78.0 0.0 . 116 . . Atlas-INDEL MLL 4297 hgsc.bcm.edu hg19 11 118374237 118374238 + Frame_Shift_Ins INS - - TC novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . MLL NM_001197104 exon27 c.7630_7631insTC p.E2544fs . . 73.0 24.0 105.0 0.0 . 548 . . Atlas-INDEL PLCL2 23228 hgsc.bcm.edu hg19 3 17051428 17051429 + Frame_Shift_Ins INS - - A novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 PLCL2,NS,carcinoma,0,2 PLCL2 NM_015184 exon2 c.212_213insA p.G71fs . . 172.0 38.0 185.0 0.0 . 145 . . Atlas-INDEL CHGB 1114 hgsc.bcm.edu hg19 20 5903753 5903754 + Frame_Shift_Ins INS - - G novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . CHGB NM_001819 exon4 c.963_964insG p.L321fs . . 186.0 33.0 145.0 0.0 . 112 . . Atlas-INDEL FASN 2194 hgsc.bcm.edu hg19 17 80050789 80050793 + Frame_Shift_Del DEL ATCTG ATCTG - novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 ATCTG ATCTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . FASN NM_004104 exon6 c.759_763del p.253_255del . . 93.0 37.0 91.0 0.0 . 154 . . Atlas-INDEL ST3GAL2 6483 hgsc.bcm.edu hg19 16 70432255 70432255 + Frame_Shift_Del DEL A A - novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . ST3GAL2 NM_006927 exon2 c.180delC p.L60fs . . 80.0 19.0 79.0 0.0 . 23 . . Atlas-INDEL SSU72 29101 hgsc.bcm.edu hg19 1 1500211 1500211 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . SSU72 NM_014188 exon2 c.167delA p.D56fs . . 103.0 40.0 110.0 0.0 . 15 . . Atlas-INDEL NAP1L5 266812 hgsc.bcm.edu hg19 4 89618757 89618768 + In_Frame_Del DEL TGACCAGCCGCG TGACCAGCCGCG - novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 TGACCAGCCGCG TGACCAGCCGCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . NAP1L5 NM_153757 exon1 c.139_150del p.47_50del . . 38.0 29.0 63.0 0.0 . 23 . . Atlas-INDEL USP54 159195 hgsc.bcm.edu hg19 10 75296083 75296083 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . USP54 NM_152586 exon9 c.1089delT p.P363fs . . 107.0 19.0 113.0 0.0 . 178 . . Atlas-INDEL KEAP1 9817 hgsc.bcm.edu hg19 19 10610330 10610330 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACB-01A-11D-A40R-10 TCGA-DD-AACB-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c89647e-854d-47b7-bf48-df5f8112ba84 035d1a22-9937-469e-a65c-1e9eb89fc338 . KEAP1 NM_012289 exon2 c.381delT p.G127fs . . 69.0 50.0 76.0 0.0 . 182 . . Atlas-INDEL