Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CAMTA1 23261 hgsc.bcm.edu hg19 1 7723459 7723459 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CAMTA1 NM_015215 exon9 c.C852T p.R284R ACACCGCATCATC . 135.0 44.0 126.0 0.0 . 226 . . Atlas-SNP AADACL3 126767 hgsc.bcm.edu hg19 1 12785194 12785194 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a AADACL3_ENST00000359318,colon,carcinoma,0,2 AADACL3 NM_001103170 exon4 c.G284A p.R95H GTTACCGCAAGTT . 136.0 36.0 114.0 0.0 . 84 . . Atlas-SNP CAMK2N1 55450 hgsc.bcm.edu hg19 1 20811831 20811831 + Silent SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CAMK2N1 NM_018584 exon1 c.C42A p.P14P GCCGTAGGGGCTC . 43.0 14.0 42.0 0.0 . 7 . . Atlas-SNP USP1 7398 hgsc.bcm.edu hg19 1 62916161 62916161 + Missense_Mutation SNP A A C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . USP1 NM_001017415 exon9 c.A1867C p.K623Q ATAGGTAAGCCAG . 113.0 38.0 114.0 0.0 . 51 . . Atlas-SNP RPE65 6121 hgsc.bcm.edu hg19 1 68897225 68897225 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . RPE65 NM_000329 exon11 c.C1172T p.A391V GCAGTGGCAGTTG . 89.0 29.0 80.0 0.0 . 87 . . Atlas-SNP GJA8 2703 hgsc.bcm.edu hg19 1 147380859 147380859 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . GJA8 NM_005267 exon2 c.C777T p.S259S CTCCTCCATCCAG . 110.0 39.0 72.0 0.0 . 108 . . Atlas-SNP PIK3C2B 5287 hgsc.bcm.edu hg19 1 204394000 204394000 + Nonsense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PIK3C2B NM_002646 exon34 c.C4885T p.R1629X GACTTCGAGATCC . 117.0 50.0 106.0 0.0 . 142 . . Atlas-SNP OR14A16 284532 hgsc.bcm.edu hg19 1 247978151 247978151 + Missense_Mutation SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . OR14A16 NM_001001966 exon1 c.T881C p.I294T ACCTTTATGGCCT . 150.0 31.0 139.0 0.0 . 90 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1926429 1926429 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MYT1L NM_015025 exon10 c.C1112T p.T371M TCCGGCGTCCTTC . 98.0 35.0 84.0 0.0 . 241 . . Atlas-SNP MAP4K3 8491 hgsc.bcm.edu hg19 2 39481600 39481600 + Missense_Mutation SNP T T A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MAP4K3 NM_003618 exon32 c.A2532T p.R844S ATTAGATCTAAAA . 88.0 33.0 90.0 0.0 . 109 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73799982 73799982 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ALMS1 NM_015120 exon16 c.G10975A p.V3659M CGAAGTGTGAAGG . 150.0 37.0 98.0 0.0 . 384 . . Atlas-SNP PLA2R1 22925 hgsc.bcm.edu hg19 2 160840493 160840493 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PLA2R1 NM_001195641 exon13 c.C2129A p.A710D ATATGGGCAAAGC . 205.0 69.0 195.0 0.0 . 153 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210696272 210696272 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a UNC80_ENST00000439458,NS,carcinoma,+1,1 UNC80 NM_032504 exon16 c.G2732T p.R911L TCACACGCTGCGC . 209.0 67.0 181.0 0.0 . 280 . . Atlas-SNP CEP70 80321 hgsc.bcm.edu hg19 3 138289885 138289885 + Missense_Mutation SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CEP70 NM_024491 exon5 c.A275G p.Q92R AGCTGTTGATTAG . 210.0 61.0 182.0 0.0 . 51 . . Atlas-SNP C3orf72 401089 hgsc.bcm.edu hg19 3 138669208 138669208 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . C3orf72 NM_001040061 exon3 c.G322A p.A108T GGCAGCGCTTCGC . 76.0 26.0 51.0 0.0 . 13 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87701601 87701601 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PTPN13 NM_080685 exon36 c.G5953A p.A1985T GTTTCAGCTCCAA . 84.0 34.0 74.0 0.0 . 203 . . Atlas-SNP NDST4 64579 hgsc.bcm.edu hg19 4 115773896 115773896 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . NDST4 NM_022569 exon8 c.G1801C p.G601R GTGGACCAATTAC . 133.0 40.0 132.0 0.0 . 193 . . Atlas-SNP IRX1 79192 hgsc.bcm.edu hg19 5 3599546 3599546 + Missense_Mutation SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . IRX1 NM_024337 exon2 c.A484G p.M162V AAGATCATGCTGG . 117.0 43.0 123.0 0.0 . 106 . . Atlas-SNP RANBP3L 202151 hgsc.bcm.edu hg19 5 36253830 36253830 + Missense_Mutation SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . RANBP3L NM_001161429 exon13 c.G1161T p.K387N TTGAATCTTCATT . 137.0 37.0 109.0 0.0 . 41 . . Atlas-SNP LNPEP 4012 hgsc.bcm.edu hg19 5 96350727 96350727 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a LNPEP,NS,carcinoma,0,1 LNPEP NM_005575 exon13 c.C2304T p.A768A CGAAGCCCTGTTT . 152.0 13.0 114.0 0.0 . 80 . . Atlas-SNP PHAX 51808 hgsc.bcm.edu hg19 5 125944167 125944167 + Silent SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PHAX NM_032177 exon3 c.C822A p.L274L TGGTCTCTTTATA . 79.0 20.0 56.0 0.0 . 20 . . Atlas-SNP SLC27A6 28965 hgsc.bcm.edu hg19 5 128364118 128364118 + Missense_Mutation SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLC27A6 NM_001017372 exon8 c.A1535T p.Y512F ACGTCTATGGTGT . 70.0 17.0 67.0 0.0 . 112 . . Atlas-SNP PCDHA12 56137 hgsc.bcm.edu hg19 5 140255085 140255085 + Missense_Mutation SNP G G C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PCDHA12 NM_018903 exon1 c.G28C p.G10R GGCCCGGGATCCC . 92.0 33.0 49.0 0.0 . 196 . . Atlas-SNP EBF1 1879 hgsc.bcm.edu hg19 5 158158157 158158157 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . EBF1 NM_024007 exon11 c.G1045C p.E349Q TGGGTTCGTTGAG . 84.0 30.0 53.0 0.0 . 110 . . Atlas-SNP PRRT1 80863 hgsc.bcm.edu hg19 6 32117487 32117487 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PRRT1 NM_030651 exon3 c.G571A p.G191R GGGTCCCGCCTGC . 33.0 12.0 28.0 0.0 . 14 . . Atlas-SNP SLC29A1 2030 hgsc.bcm.edu hg19 6 44197695 44197695 + Silent SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLC29A1 NM_004955 exon5 c.G366T p.V122V GCTGGTGTTTCTG . 68.0 23.0 57.0 0.0 . 45 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 65301374 65301374 + Silent SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . EYS NM_001142800 exon26 c.T4386C p.S1462S CCCCCTAGAGACA . 79.0 22.0 79.0 0.0 . 527 . . Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76124503 76124503 + Silent SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . FILIP1 NM_015687 exon2 c.T186A p.S62S TTCTCCAGATGTT . 244.0 67.0 219.0 0.0 . 173 . . Atlas-SNP GET4 51608 hgsc.bcm.edu hg19 7 930603 930603 + Missense_Mutation SNP T T G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . GET4 NM_015949 exon5 c.T505G p.S169A CTGCACTCAGCGG . 186.0 56.0 148.0 0.0 . 17 . . Atlas-SNP SCIN 85477 hgsc.bcm.edu hg19 7 12610490 12610490 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SCIN NM_001112706 exon1 c.G78A p.K26K TGAGAAGCTGGAG . 69.0 15.0 87.0 0.0 . 105 . . Atlas-SNP SP4 6671 hgsc.bcm.edu hg19 7 21521737 21521737 + Silent SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SP4 NM_003112 exon5 c.T2103C p.H701H AACCCATACAGGT . 156.0 53.0 135.0 0.0 . 91 . . Atlas-SNP CROT 54677 hgsc.bcm.edu hg19 7 86986879 86986879 + Silent SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CROT NM_001143935 exon4 c.T172C p.L58L GGGTTCTTGGATC . 32.0 9.0 28.0 0.0 . 81 . . Atlas-SNP C7orf43 55262 hgsc.bcm.edu hg19 7 99754128 99754128 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . C7orf43 NM_018275 exon8 c.C1121A p.A374D CAAGAAGCGGTCA . 118.0 5.0 81.0 0.0 . 28 . . Atlas-SNP ZC3HAV1 56829 hgsc.bcm.edu hg19 7 138761070 138761070 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ZC3HAV1 NM_024625 exon6 c.G1659A p.E553E GATCGTCTCCATG . 95.0 34.0 90.0 0.0 . 75 . . Atlas-SNP STAR 6770 hgsc.bcm.edu hg19 8 38002821 38002821 + Silent SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a STAR,NS,lymphoid_neoplasm,0,1 STAR NM_000349 exon6 c.T663C p.G221G AGTGGGACCGTGC . 31.0 3.0 33.0 0.0 . 29 . . Atlas-SNP ST18 9705 hgsc.bcm.edu hg19 8 53084937 53084937 + Missense_Mutation SNP C C A rs147121734 bycluster;by1000genomes;alternate_allele TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ST18 NM_014682 exon10 c.G484T p.D162Y CTTCATCGCTCTC . 150.0 42.0 117.0 0.0 . 212 . C|1.000;T|0.000 Atlas-SNP POU5F1B 5462 hgsc.bcm.edu hg19 8 128428642 128428642 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . POU5F1B NM_001159542 exon1 c.G531A p.K177K TGGGAAGGTGTTC . 71.0 21.0 60.0 0.0 . 32 . . Atlas-SNP ZER1 10444 hgsc.bcm.edu hg19 9 131515868 131515868 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ZER1 NM_006336 exon4 c.G321A p.E107E GTACAGCTCCACC . 36.0 10.0 40.0 0.0 . 49 . . Atlas-SNP GDF10 2662 hgsc.bcm.edu hg19 10 48428812 48428812 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . GDF10 NM_004962 exon2 c.C1074T p.D358D CTTCTCGTCAAAG . 160.0 49.0 122.0 0.0 . 79 . . Atlas-SNP TM9SF3 56889 hgsc.bcm.edu hg19 10 98325145 98325145 + Missense_Mutation SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . TM9SF3 NM_020123 exon3 c.G337T p.D113Y CTTTATCTAAATC . 90.0 26.0 61.0 0.0 . 45 . . Atlas-SNP ZFYVE27 118813 hgsc.bcm.edu hg19 10 99498236 99498236 + Missense_Mutation SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ZFYVE27 NM_001002261 exon1 c.T2C p.M1T ACAGGATGCAGAC . 42.0 18.0 43.0 0.0 . 31 . . Atlas-SNP TDRD1 56165 hgsc.bcm.edu hg19 10 115985937 115985937 + Missense_Mutation SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . TDRD1 NM_198795 exon22 c.T3137C p.L1046P GCCACCTGGCGCT . 100.0 38.0 87.0 0.0 . 126 . . Atlas-SNP DPF2 5977 hgsc.bcm.edu hg19 11 65116351 65116351 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a DPF2,NS,carcinoma,0,1 DPF2 NM_006268 exon10 c.C1048G p.R350G TGCGATCGTGGCT . 158.0 9.0 139.0 0.0 . 54 . . Atlas-SNP SPCS2 9789 hgsc.bcm.edu hg19 11 74660392 74660392 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SPCS2 NM_014752 exon1 c.G62A p.G21D GGGCTGGTGGTGC . 66.0 25.0 43.0 0.0 . 17 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 71003577 71003577 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PTPRB NM_001206972 exon1 c.C18T p.A6A CAACCCGGCTCCA . 93.0 27.0 74.0 0.0 . 676 . . Atlas-SNP ACACB 32 hgsc.bcm.edu hg19 12 109677646 109677646 + Missense_Mutation SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ACACB NM_001093 exon34 c.C4674A p.F1558L CTCCTTCGAATAC . 66.0 12.0 50.0 0.0 . 330 . . Atlas-SNP RPH3A 22895 hgsc.bcm.edu hg19 12 113303242 113303242 + Missense_Mutation SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . RPH3A NM_001143854 exon6 c.A254T p.N85I TAGAAAACATGAG . 88.0 18.0 90.0 0.0 . 98 . . Atlas-SNP SLITRK1 114798 hgsc.bcm.edu hg19 13 84454719 84454719 + Silent SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLITRK1 NM_052910 exon1 c.T924A p.G308G CTTTGTACCTCCG . 83.0 42.0 125.0 0.0 . 196 . . Atlas-SNP F10 2159 hgsc.bcm.edu hg19 13 113795287 113795287 + Missense_Mutation SNP A A T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . F10 NM_000504 exon5 c.A425T p.E142V GCCACGAGGAACA . 117.0 27.0 91.0 0.0 . 53 . . Atlas-SNP INO80 54617 hgsc.bcm.edu hg19 15 41388013 41388013 + Missense_Mutation SNP C C A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . INO80 NM_017553 exon3 c.G257T p.G86V CCTGCTCCAGAAG . 101.0 33.0 93.0 0.0 . 122 . . Atlas-SNP MGA 23269 hgsc.bcm.edu hg19 15 42028493 42028493 + Nonsense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MGA NM_001080541 exon13 c.G4031A p.W1344X GCAACTGGGAGGA . 96.0 33.0 83.0 0.0 . 264 . . Atlas-SNP PIGB 9488 hgsc.bcm.edu hg19 15 55647553 55647553 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . PIGB NM_004855 exon12 c.G1588A p.E530K TTGCCAGAGGGTC . 181.0 13.0 147.0 0.0 . 36 . . Atlas-SNP SLTM 79811 hgsc.bcm.edu hg19 15 59192012 59192012 + Silent SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLTM NM_024755 exon7 c.T714C p.A238A ATCCTCAGCTTCT . 124.0 43.0 106.0 0.0 . 90 . . Atlas-SNP IGDCC3 9543 hgsc.bcm.edu hg19 15 65622666 65622666 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . IGDCC3 NM_004884 exon11 c.G1823A p.R608H ACAAAGCGGACTG . 107.0 40.0 97.0 0.0 . 82 . . Atlas-SNP SLC5A11 115584 hgsc.bcm.edu hg19 16 24920370 24920370 + Missense_Mutation SNP A A C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLC5A11 NM_052944 exon14 c.A1603C p.T535P CTCATCACTGTCT . 109.0 10.0 102.0 0.0 . 97 . . Atlas-SNP ADCY7 113 hgsc.bcm.edu hg19 16 50339757 50339757 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a ADCY7,colon,carcinoma,0,1 ADCY7 NM_001114 exon13 c.C1749T p.R583R TGAGCGCGAGGTG . 113.0 41.0 106.0 0.0 . 90 . . Atlas-SNP CCDC79 283847 hgsc.bcm.edu hg19 16 66822199 66822199 + Silent SNP A A C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CCDC79 NM_001136505 exon6 c.T273G p.V91V ACAGTAAACTGAA . 461.0 147.0 364.0 1.0 . 32 . . Atlas-SNP MINK1 50488 hgsc.bcm.edu hg19 17 4789860 4789860 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MINK1 NM_170663 exon10 c.G888A p.R296R GGAGCGGCAGGTC . 65.0 20.0 55.0 0.0 . 110 . . Atlas-SNP SLC16A3 9123 hgsc.bcm.edu hg19 17 80195333 80195333 + Silent SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . SLC16A3 NM_001206950 exon4 c.G687T p.V229V CTTTGTGCTTTAC . 83.0 5.0 32.0 0.0 . 19 . . Atlas-SNP SOGA2 23255 hgsc.bcm.edu hg19 18 8784213 8784213 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a CCDC165,NS,carcinoma,0,1 . NM_015210 exon6 c.G1103A p.R368H TCCAGCGCTGCGA . 58.0 14.0 34.0 0.0 . . . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9074914 9074914 + Missense_Mutation SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . MUC16 NM_024690 exon3 c.T12532C p.S4178P CTTGTGATGTCAA . 181.0 64.0 128.0 0.0 . 4315 . . Atlas-SNP AP1M1 8907 hgsc.bcm.edu hg19 19 16338431 16338431 + Missense_Mutation SNP A A G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . AP1M1 NM_001130524 exon8 c.A782G p.N261S TCGAGAATGACCG . 93.0 11.0 95.0 0.0 . 48 . . Atlas-SNP ZNF607 84775 hgsc.bcm.edu hg19 19 38189778 38189778 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ZNF607 NM_032689 exon5 c.G1254A p.E418E GGGTTTCTCACCG . 70.0 26.0 67.0 0.0 . 82 . . Atlas-SNP KCNN4 3783 hgsc.bcm.edu hg19 19 44278585 44278585 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . KCNN4 NM_002250 exon3 c.G442C p.G148R CTTCCCCTTGGCC . 47.0 18.0 62.0 0.0 . 37 . . Atlas-SNP PLA2G4C 8605 hgsc.bcm.edu hg19 19 48602999 48602999 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a PLA2G4C,NS,carcinoma,0,1 PLA2G4C NM_001159322 exon5 c.G406C p.A136P TCGCTGCTTGGAT . 96.0 27.0 92.0 0.0 . 76 . . Atlas-SNP NLRP4 147945 hgsc.bcm.edu hg19 19 56369797 56369797 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . NLRP4 NM_134444 exon3 c.C1038T p.I346I CTGGATCCTGTGT . 74.0 32.0 49.0 0.0 . 331 . . Atlas-SNP MC3R 4159 hgsc.bcm.edu hg19 20 54824818 54824818 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a MC3R,colon,carcinoma,-1,2 MC3R NM_019888 exon1 c.C919T p.R307C GAATTGCGCAACA . 203.0 53.0 131.0 0.0 . 83 . . Atlas-SNP CHRNA4 1137 hgsc.bcm.edu hg19 20 61981053 61981053 + Silent SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CHRNA4 NM_000744 exon5 c.C1710T p.G570G CTGGACGCCCTCC . 127.0 61.0 82.0 0.0 . 98 . . Atlas-SNP TPTE 7179 hgsc.bcm.edu hg19 21 10971325 10971325 + Missense_Mutation SNP G G T rs139096194 bycluster;byfrequency;alternate_allele TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a TPTE_ENST00000361285,NS,carcinoma,+1,3 TPTE NM_199259 exon5 c.C32A p.A11E ACTCCCGCCAGGT . 101.0 21.0 51.0 0.0 . 513 . G|1.000;A|0.000 Atlas-SNP KRTAP13-2 337959 hgsc.bcm.edu hg19 21 31744148 31744148 + Silent SNP T T C novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . KRTAP13-2 NM_181621 exon1 c.A384G p.R128R CAGGGATCTGACA . 91.0 31.0 86.0 0.0 . 29 . . Atlas-SNP ELFN2 114794 hgsc.bcm.edu hg19 22 37769399 37769399 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ELFN2 NM_052906 exon3 c.C2176A p.Q726K CGCGCTGGCTCAG . 107.0 5.0 41.0 0.0 . 89 . . Atlas-SNP CARD10 29775 hgsc.bcm.edu hg19 22 37893159 37893159 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CARD10 NM_014550 exon12 c.G1814A p.R605Q GGGCTCCGGCCAG . 149.0 80.0 84.0 0.0 . 55 . . Atlas-SNP ACO2 50 hgsc.bcm.edu hg19 22 41895734 41895734 + Missense_Mutation SNP C C G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . ACO2 NM_001098 exon2 c.C41G p.A14G AGAAAGCTCTGGG . 27.0 10.0 19.0 0.0 . 58 . . Atlas-SNP PKDREJ 10343 hgsc.bcm.edu hg19 22 46657638 46657638 + Silent SNP G G T rs369645000 alternate_allele TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a PKDREJ,NS,carcinoma,0,1 PKDREJ NM_006071 exon1 c.C1582A p.R528R AATGCCGAAAAGC . 96.0 4.0 93.0 0.0 . 195 . . Atlas-SNP CXorf38 159013 hgsc.bcm.edu hg19 X 40498275 40498275 + Missense_Mutation SNP T T G novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CXorf38 NM_144970 exon3 c.A457C p.K153Q CTTTCTTTCGATC . 109.0 39.0 86.0 0.0 . 29 . . Atlas-SNP CXorf36 79742 hgsc.bcm.edu hg19 X 45011086 45011086 + Silent SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . CXorf36 NM_176819 exon5 c.G1113A p.Q371Q CCTCCCCTGGAGA . 149.0 53.0 153.0 0.0 . 53 . . Atlas-SNP FAM46D 169966 hgsc.bcm.edu hg19 X 79698375 79698375 + Missense_Mutation SNP C C T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . FAM46D NM_001170574 exon5 c.C337T p.P113S TTTTTACCAAAAG . 158.0 52.0 154.0 0.0 . 69 . . Atlas-SNP GPR101 83550 hgsc.bcm.edu hg19 X 136113472 136113472 + Missense_Mutation SNP G G T novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . GPR101 NM_054021 exon1 c.C362A p.T121N ACAATGGTGTTGA . 73.0 36.0 39.0 0.0 . 96 . . Atlas-SNP COX2 5743 hgsc.bcm.edu hg19 MT 7775 7775 + Missense_Mutation SNP G G A novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . . ENST00000361739 exon1 c.G190A p.V64I GAAACCGTCTGAA . 13.0 13.0 1.0 0.0 . . . . Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136582246 136582439 + Frame_Shift_Del DEL TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT - novel TCGA-DD-A73F-01A-11D-A32G-10 TCGA-DD-A73F-10A-01D-A32G-10 TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 26191956-5876-4a9c-94ba-68e53766fb9b 58d96a98-3030-4b89-b405-adb2c0cd8f7a . BCLAF1 NM_014739 exon13 c.2758_3016del p.920_921del . . 273.0 11.0 320.0 0.0 . 203 . . Pindel