Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TPRG1L	127262	hgsc.bcm.edu	hg19	1	3544159	3544159	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TPRG1L	NM_182752	exon4	c.C566G	p.A189G	CCTATGCCACTTT	.	75.0	25.0	99.0	0.0	.	24	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19525340	19525340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	UBR4	NM_020765	exon4	c.T461A	p.M154K	TTCATCATTGCTG	.	128.0	42.0	158.0	0.0	.	415	.	.	Atlas-SNP
INSRR	3645	hgsc.bcm.edu	hg19	1	156815015	156815015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	INSRR	NM_014215	exon12	c.G2290A	p.E764K	TGTCCTCCTGGAT	.	87.0	23.0	67.0	0.0	.	309	.	.	Atlas-SNP
FCRL1	115350	hgsc.bcm.edu	hg19	1	157771365	157771365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	FCRL1	NM_001159398	exon6	c.C889T	p.P297S	CAGTAGGCACTAG	.	132.0	52.0	128.0	0.0	.	164	.	.	Atlas-SNP
TIPRL	261726	hgsc.bcm.edu	hg19	1	168165787	168165787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TIPRL	NM_152902	exon5	c.A519C	p.R173S	CCAGAGAGTAATG	.	25.0	10.0	44.0	0.0	.	16	.	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	180080224	180080224	+	Missense_Mutation	SNP	G	G	T	rs201090590	by1000genomes;alternate_allele	TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CEP350	NM_014810	exon38	c.G9282T	p.E3094D	CTTTGAGACCCTG	.	71.0	19.0	108.0	0.0	.	418	.	G|1.000;C|0.000	Atlas-SNP
NT5C1B	93034	hgsc.bcm.edu	hg19	2	18765784	18765784	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	NT5C1B	NM_001199087	exon5	c.G950A	p.W317X	ACCGGCCAGGGGC	.	57.0	13.0	40.0	0.0	.	72	.	.	Atlas-SNP
DHX57	90957	hgsc.bcm.edu	hg19	2	39041005	39041005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	DHX57,NS,chondrosarcoma,0,1	DHX57	NM_198963	exon21	c.A3639G	p.I1213M	TGCTGATATCAGC	.	215.0	11.0	288.0	0.0	.	127	.	.	Atlas-SNP
CDCA7	83879	hgsc.bcm.edu	hg19	2	174224163	174224163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CDCA7	NM_031942	exon3	c.G328T	p.D110Y	CATGCCGACTCTG	.	106.0	38.0	129.0	0.0	.	48	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179435859	179435859	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TTN	NM_001267550	exon326	c.T75000C	p.C25000C	CACATAACATTCT	.	41.0	16.0	49.0	0.0	.	18412	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211512674	211512674	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CPS1	NM_001122633	exon27	c.G3247C	p.G1083R	ATCATGGGCACAA	.	219.0	56.0	245.0	0.0	.	485	.	.	Atlas-SNP
MARCH4	57574	hgsc.bcm.edu	hg19	2	217124227	217124227	+	Silent	SNP	C	C	T	rs139359941		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MARCH4	NM_020814	exon4	c.G1041A	p.S347S	CTCTTCCGAGGAG	.	88.0	32.0	118.0	0.0	.	50	.	C|1.000;T|0.000	Atlas-SNP
LRRN1	57633	hgsc.bcm.edu	hg19	3	3887625	3887625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	LRRN1	NM_020873	exon2	c.C1300T	p.R434C	CCAAATCGTTTAA	.	109.0	10.0	150.0	0.0	.	82	.	.	Atlas-SNP
CNOT10	25904	hgsc.bcm.edu	hg19	3	32801028	32801028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CNOT10	NM_001256742	exon14	c.A1854C	p.K618N	AGATAAACTTCTT	.	71.0	9.0	87.0	0.0	.	57	.	.	Atlas-SNP
OXSR1	9943	hgsc.bcm.edu	hg19	3	38263170	38263170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	OXSR1	NM_005109	exon6	c.A592G	p.M198V	GAAGTTATGGAAC	.	91.0	7.0	102.0	0.0	.	74	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47163059	47163059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SETD2	NM_014159	exon3	c.A3067G	p.S1023G	CACTACTGTCACA	.	172.0	57.0	206.0	0.0	.	721	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121410667	121410667	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	GOLGB1	NM_001256486	exon14	c.A7544T	p.E2515V	ATTTCTTCTTTAA	.	59.0	11.0	67.0	0.0	.	319	.	.	Atlas-SNP
SLC9A9	285195	hgsc.bcm.edu	hg19	3	143271227	143271227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SLC9A9	NM_173653	exon9	c.G1066T	p.D356Y	TGGAATCCGAAGA	.	43.0	19.0	75.0	0.0	.	117	.	.	Atlas-SNP
SKIL	6498	hgsc.bcm.edu	hg19	3	170110171	170110171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SKIL	NM_001248008	exon6	c.A2021T	p.Q674L	AGCTGCAAATTCT	.	239.0	78.0	260.0	0.0	.	67	.	.	Atlas-SNP
CC2D2A	57545	hgsc.bcm.edu	hg19	4	15516353	15516353	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CC2D2A	NM_001080522	exon10	c.T741A	p.G247G	TAATGGTGATGAT	.	51.0	19.0	58.0	0.0	.	158	.	.	Atlas-SNP
SPATA18	132671	hgsc.bcm.edu	hg19	4	52938154	52938154	+	Missense_Mutation	SNP	G	G	T	rs376481625	alternate_allele	TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SPATA18	NM_145263	exon6	c.G590T	p.R197L	ATAGGCGGTCAGA	.	106.0	25.0	115.0	0.0	.	222	.	.	Atlas-SNP
ARL9	132946	hgsc.bcm.edu	hg19	4	57384922	57384922	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ARL9	NM_206919	exon3	c.C95A	p.S32X	TGGATTCAGCAGA	.	91.0	27.0	130.0	0.0	.	10	.	.	Atlas-SNP
MFSD8	256471	hgsc.bcm.edu	hg19	4	128851953	128851953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MFSD8	NM_152778	exon10	c.A883G	p.M295V	TATCCATTGTTAA	.	233.0	13.0	293.0	0.0	.	46	.	.	Atlas-SNP
WWC2	80014	hgsc.bcm.edu	hg19	4	184182412	184182412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	WWC2	NM_024949	exon11	c.C1636G	p.L546V	GCCTCCCTGTCCT	.	48.0	18.0	47.0	0.0	.	78	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187557324	187557324	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	FAT1	NM_005245	exon6	c.C4038A	p.I1346I	CTTGGAGATCCAT	.	87.0	28.0	86.0	0.0	.	500	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13830842	13830842	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	DNAH5	NM_001369	exon36	c.G5925A	p.G1975G	GGCTCCCCCCATG	.	56.0	19.0	50.0	0.0	.	868	.	.	Atlas-SNP
FYB	2533	hgsc.bcm.edu	hg19	5	39137761	39137761	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	FYB	NM_001243093	exon7	c.G1486T	p.E496X	TTTTCTCCAGCTC	.	90.0	37.0	124.0	0.0	.	354	.	.	Atlas-SNP
LHFPL2	10184	hgsc.bcm.edu	hg19	5	77805629	77805629	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	LHFPL2	NM_005779	exon4	c.T408C	p.C136C	CAGCCCACAGACA	.	45.0	18.0	57.0	0.0	.	9	.	.	Atlas-SNP
PCDHB2	56133	hgsc.bcm.edu	hg19	5	140475012	140475012	+	Missense_Mutation	SNP	C	C	A	rs376693798		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	PCDHB2	NM_018936	exon1	c.C638A	p.T213N	GGTTAACCCTCAC	.	46.0	15.0	64.0	0.0	.	163	.	.	Atlas-SNP
TRIM41	90933	hgsc.bcm.edu	hg19	5	180661549	180661549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TRIM41	NM_033549	exon6	c.G1667A	p.G556D	CCAACGGCAAACG	.	113.0	45.0	137.0	0.0	.	96	.	.	Atlas-SNP
EHMT2	10919	hgsc.bcm.edu	hg19	6	31860513	31860513	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	EHMT2	NM_006709	exon7	c.668-2A>T	.	CAGATCTGGAAGA	.	66.0	13.0	99.0	0.0	.	45	.	.	Atlas-SNP
SMPD2	6610	hgsc.bcm.edu	hg19	6	109762571	109762571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SMPD2	NM_003080	exon2	c.A62T	p.Y21F	TTCCGTACTTGAG	.	52.0	20.0	68.0	0.0	.	25	.	.	Atlas-SNP
TAAR2	9287	hgsc.bcm.edu	hg19	6	132938436	132938436	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TAAR2	NM_001033080	exon2	c.T909C	p.F303F	ATAGCCAAACCAT	.	136.0	46.0	203.0	0.0	.	45	.	.	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	hg19	6	154360707	154360707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	OPRM1	NM_001145279	exon3	c.G307T	p.A103S	ACGAACGCCAGCA	.	103.0	38.0	83.0	0.0	.	241	.	.	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	hg19	6	154360708	154360708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	OPRM1	NM_001145279	exon3	c.C308T	p.A103V	CGAACGCCAGCAA	.	103.0	40.0	83.0	0.0	.	241	.	.	Atlas-SNP
TMEM184A	202915	hgsc.bcm.edu	hg19	7	1589783	1589783	+	Silent	SNP	G	G	T	rs139449337	bycluster;by1000genomes;alternate_allele	TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TMEM184A	NM_001097620	exon5	c.C528A	p.I176I	GAACCCGATGGAG	.	29.0	12.0	38.0	0.0	.	35	.	G|0.997;A|0.003	Atlas-SNP
C7orf10	79783	hgsc.bcm.edu	hg19	7	40535937	40535937	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	C7orf10	NM_001193313	exon12	c.C1062A	p.V354V	TGGAGTCCCGTAT	.	76.0	24.0	78.0	0.0	.	99	.	.	Atlas-SNP
PDK4	5166	hgsc.bcm.edu	hg19	7	95216812	95216812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	PDK4	NM_002612	exon9	c.T899G	p.L300R	ATTCTCAGGGGAA	.	126.0	32.0	117.0	0.0	.	42	.	.	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104753453	104753453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MLL5	NM_018682	exon26	c.T5250G	p.F1750L	ACTTTTTCCTTCG	.	264.0	72.0	229.0	0.0	.	173	.	.	Atlas-SNP
ADAMDEC1	27299	hgsc.bcm.edu	hg19	8	24254788	24254788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ADAMDEC1	NM_014479	exon6	c.A446G	p.Y149C	GAGGATACTTCAC	.	38.0	22.0	87.0	0.0	.	69	.	.	Atlas-SNP
IFNE	338376	hgsc.bcm.edu	hg19	9	21481103	21481103	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	IFNE	NM_176891	exon1	c.G591A	p.K197K	CTCTTGCTTCATG	.	77.0	25.0	110.0	0.0	.	16	.	.	Atlas-SNP
TOPORS	10210	hgsc.bcm.edu	hg19	9	32543942	32543942	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TOPORS	NM_005802	exon3	c.C581G	p.S194X	CTAGGTGAATACA	.	106.0	32.0	102.0	0.0	.	127	.	.	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114469021	114469021	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	C9orf84	NM_173521	exon18	c.G2372C	p.S791T	CAGGAACTTGTAC	.	39.0	11.0	52.0	0.0	.	207	.	.	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	hg19	10	13234349	13234349	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MCM10	NM_182751	exon12	c.C1614G	p.A538A	TTTAGCCAAAGCC	.	77.0	24.0	75.0	0.0	.	76	.	.	Atlas-SNP
AP3M1	26985	hgsc.bcm.edu	hg19	10	75896531	75896531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	AP3M1	NM_207012	exon4	c.A304G	p.I102V	CCTTAATTGCAGC	.	108.0	39.0	118.0	0.0	.	28	.	.	Atlas-SNP
DMBT1	1755	hgsc.bcm.edu	hg19	10	124352076	124352076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	DMBT1	NM_007329	exon20	c.G2465C	p.C822S	ACAACTGTGGCCA	.	61.0	21.0	57.0	0.0	.	677	.	.	Atlas-SNP
SYT9	143425	hgsc.bcm.edu	hg19	11	7335070	7335070	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SYT9	NM_175733	exon3	c.T942C	p.S314S	GTTCTCTCGTCAT	.	77.0	30.0	84.0	0.0	.	91	.	.	Atlas-SNP
GYLTL1B	120071	hgsc.bcm.edu	hg19	11	45948990	45948990	+	Missense_Mutation	SNP	C	C	T	rs148997856		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	GYLTL1B	NM_152312	exon11	c.C1450T	p.R484W	GCTGCCCGGCAGG	.	102.0	6.0	105.0	0.0	.	45	.	C|1.000;T|0.000	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	hg19	11	46880821	46880821	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	LRP4	NM_002334	exon38	c.G5431T	p.E1811X	TTCCCTCTACGAT	.	82.0	25.0	88.0	0.0	.	160	.	.	Atlas-SNP
NRXN2	9379	hgsc.bcm.edu	hg19	11	64434903	64434903	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	NRXN2	NM_015080	exon9	c.G1617A	p.G539G	TCCACCCCCAGCC	.	70.0	6.0	71.0	0.0	.	247	.	.	Atlas-SNP
RELA	5970	hgsc.bcm.edu	hg19	11	65423177	65423177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	RELA	NM_021975	exon10	c.G1015A	p.A339T	CAGAAGCTGAGCT	.	42.0	14.0	55.0	0.0	.	44	.	.	Atlas-SNP
AMOTL1	154810	hgsc.bcm.edu	hg19	11	94533439	94533439	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	AMOTL1	NM_130847	exon3	c.C1083T	p.V361V	GGCCGTCCTGCGG	.	51.0	13.0	63.0	0.0	.	95	.	.	Atlas-SNP
CUL5	8065	hgsc.bcm.edu	hg19	11	107923507	107923507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CUL5	NM_003478	exon5	c.A532G	p.I178V	CTGGTTATTGGAG	.	53.0	20.0	74.0	0.0	.	71	.	.	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	hg19	11	115111039	115111039	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CADM1	NM_014333	exon2	c.C226T	p.L76L	TCAGTAGCTGAAT	.	88.0	20.0	119.0	0.0	.	74	.	.	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	hg19	12	121416899	121416899	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.,1	HNF1A	NM_000545	exon1	c.326+2T>A	.	CTGCAGTAAGGAG	.	68.0	13.0	66.0	0.0	.	302	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25284610	25284610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ATP12A	NM_001185085	exon20	c.A2794G	p.R932G	TACCAGAGGGAAT	.	153.0	45.0	162.0	0.0	.	172	.	.	Atlas-SNP
KLHL33	123103	hgsc.bcm.edu	hg19	14	20898166	20898166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	KLHL33	NM_001109997	exon2	c.G669A	p.M223I	TAGGGCCATGTCT	.	66.0	5.0	86.0	0.0	.	37	.	.	Atlas-SNP
HEATR4	399671	hgsc.bcm.edu	hg19	14	73964942	73964942	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	HEATR4_ENST00000553558,bladder,carcinoma,0,2	HEATR4	NM_203309	exon13	c.C2463A	p.I821I	GGCTAGGATGCTA	.	102.0	41.0	102.0	0.0	.	126	.	.	Atlas-SNP
SNW1	22938	hgsc.bcm.edu	hg19	14	78184553	78184553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	SNW1	NM_012245	exon14	c.G1489T	p.D497Y	AAGGATCTTCCTC	.	108.0	35.0	134.0	0.0	.	44	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96779439	96779439	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ATG2B	NM_018036	exon25	c.A3805C	p.S1269R	CGCTACTGGAAAC	.	67.0	11.0	71.0	0.0	.	169	.	.	Atlas-SNP
CILP	8483	hgsc.bcm.edu	hg19	15	65489133	65489133	+	Missense_Mutation	SNP	C	C	A	rs377269093	alternate_allele	TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CILP	NM_003613	exon9	c.G3491T	p.R1164L	CCCTGGCGCTGGC	.	51.0	18.0	65.0	0.0	.	124	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9862753	9862753	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	GRIN2A,NS,carcinoma,0,1	GRIN2A	NM_000833	exon13	c.G2550A	p.T850T	CACGCCCGTGAAA	.	39.0	13.0	44.0	0.0	.	366	.	.	Atlas-SNP
WDR59	79726	hgsc.bcm.edu	hg19	16	74919609	74919609	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	WDR59	NM_030581	exon25	c.G2631A	p.E877E	TCGCTTCTCTCTC	.	113.0	39.0	99.0	0.0	.	66	.	.	Atlas-SNP
OR1G1	8390	hgsc.bcm.edu	hg19	17	3030650	3030650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	OR1G1	NM_003555	exon1	c.C196T	p.L66F	GGGAGAGGTTGGC	.	71.0	20.0	81.0	0.0	.	29	.	.	Atlas-SNP
MYBBP1A	10514	hgsc.bcm.edu	hg19	17	4442761	4442761	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	MYBBP1A	NM_014520	exon26	c.T3936G	p.L1312L	ACTCTGAAGCAGG	.	68.0	24.0	65.0	0.0	.	69	.	.	Atlas-SNP
PTRF	284119	hgsc.bcm.edu	hg19	17	40556905	40556905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	PTRF	NM_012232	exon2	c.G973A	p.V325I	TCTTGACGTGGAA	.	101.0	35.0	107.0	0.0	.	48	.	.	Atlas-SNP
EZH1	2145	hgsc.bcm.edu	hg19	17	40872423	40872423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	EZH1	NM_001991	exon7	c.G532C	p.E178Q	CCAACTCCAGAAA	.	81.0	28.0	84.0	0.0	.	62	.	.	Atlas-SNP
EFCAB13	124989	hgsc.bcm.edu	hg19	17	45421602	45421602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	.	NM_152347	exon7	c.T378A	p.N126K	GCCGAATCAGTAC	.	89.0	20.0	99.0	0.0	.	.	.	.	Atlas-SNP
KATNAL2	83473	hgsc.bcm.edu	hg19	18	44593424	44593424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	KATNAL2	NM_031303	exon8	c.G543T	p.W181C	AAAGTGGAATGAC	.	58.0	19.0	69.0	0.0	.	64	.	.	Atlas-SNP
PTBP1	5725	hgsc.bcm.edu	hg19	19	804341	804341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	PTBP1	NM_031990	exon5	c.A338G	p.Y113C	TGAACTACTACAC	.	44.0	15.0	36.0	0.0	.	43	.	.	Atlas-SNP
ARID3A	1820	hgsc.bcm.edu	hg19	19	966608	966608	+	Missense_Mutation	SNP	G	G	T	rs368267576	alternate_allele	TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ARID3A	NM_005224	exon7	c.G1235T	p.R412L	CTGGCCGCCTGCC	.	82.0	11.0	113.0	0.0	.	35	.	.	Atlas-SNP
GRAMD1A	57655	hgsc.bcm.edu	hg19	19	35501096	35501096	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	GRAMD1A	NM_020895	exon5	c.C426G	p.T142T	GGAGACCACGGTG	.	53.0	19.0	84.0	0.0	.	39	.	.	Atlas-SNP
KPTN	11133	hgsc.bcm.edu	hg19	19	47984228	47984228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	KPTN	NM_007059	exon5	c.A512G	p.H171R	TAGAGATGAATGG	.	90.0	21.0	81.0	0.0	.	34	.	.	Atlas-SNP
IRF3	3661	hgsc.bcm.edu	hg19	19	50167999	50167999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	IRF3	NM_001197122	exon2	c.C97T	p.R33C	GGAAGCGCGTGCG	.	63.0	12.0	67.0	0.0	.	27	.	.	Atlas-SNP
L3MBTL1	26013	hgsc.bcm.edu	hg19	20	42159524	42159524	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	L3MBTL1	NM_032107	exon11	c.A1213T	p.S405C	AGCCAGAGCCACG	.	124.0	38.0	155.0	0.0	.	105	.	.	Atlas-SNP
L3MBTL1	26013	hgsc.bcm.edu	hg19	20	42159526	42159526	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	L3MBTL1	NM_032107	exon11	c.C1215T	p.S405S	CCAGAGCCACGTG	.	120.0	37.0	150.0	0.0	.	105	.	.	Atlas-SNP
CRYZL1	9946	hgsc.bcm.edu	hg19	21	35003837	35003837	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	CRYZL1	NM_145858	exon2	c.A21G	p.Q7Q	ACTCTGTTGGAAA	.	257.0	92.0	318.0	0.0	.	16	.	.	Atlas-SNP
NHS	4810	hgsc.bcm.edu	hg19	X	17746802	17746802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	NHS	NM_198270	exon7	c.C4193T	p.P1398L	TTTCACCACTTAG	.	243.0	96.0	233.0	0.0	.	302	.	.	Atlas-SNP
WDR45	11152	hgsc.bcm.edu	hg19	X	48933031	48933031	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	WDR45	NM_007075	exon10	c.C822T	p.R274R	GGAGCGGCGGTTG	.	118.0	35.0	146.0	0.0	.	40	.	.	Atlas-SNP
FAM46D	169966	hgsc.bcm.edu	hg19	X	79698133	79698133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	FAM46D	NM_001170574	exon5	c.A95T	p.N32I	AGGGGAATTTCCC	.	135.0	52.0	191.0	0.0	.	69	.	.	Atlas-SNP
GPC3	2719	hgsc.bcm.edu	hg19	X	132887923	132887923	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	GPC3	NM_001164617	exon3	c.A618C	p.K206N	AAATACTTTCAGG	.	199.0	11.0	199.0	0.0	.	88	.	.	Atlas-SNP
ITGA7	3679	hgsc.bcm.edu	hg19	12	56081838	56081841	+	Frame_Shift_Del	DEL	CTGC	CTGC	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	CTGC	CTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ITGA7	NM_001144996	exon24	c.3110_3113del	p.1037_1038del	.	.	96.0	26.0	136.0	0.0	.	194	.	.	Atlas-Indel,Pindel
CABS1	85438	hgsc.bcm.edu	hg19	4	71201468	71201468	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	CABS1,colon,carcinoma,0,1	CABS1	NM_033122	exon1	c.711delG	p.E237fs	.	.	67.0	26.0	74.0	0.0	.	75	.	.	Atlas-Indel,Pindel
RNF123	63891	hgsc.bcm.edu	hg19	3	49749928	49749930	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	RNF123	NM_022064	exon27	c.2512_2514del	p.838_838del	.	.	48.0	12.0	55.0	0.0	.	100	.	.	Atlas-Indel,Pindel
STAG2	10735	hgsc.bcm.edu	hg19	X	123176443	123176451	+	In_Frame_Del	DEL	GACATATGC	GACATATGC	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	GACATATGC	GACATATGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	STAG2	NM_001042749	exon7	c.409_417del	p.137_139del	.	.	338.0	79.0	447.0	0.0	.	309	.	.	Atlas-Indel,Pindel
WWC1	23286	hgsc.bcm.edu	hg19	5	167857166	167857182	+	Frame_Shift_Del	DEL	TGCAATATTAATCATCC	TGCAATATTAATCATCC	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	TGCAATATTAATCATCC	TGCAATATTAATCATCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	WWC1	NM_001161662	exon14	c.2024_2040del	p.675_680del	.	.	42.0	10.0	60.0	0.0	.	98	.	.	Atlas-INDEL
ORMDL2	29095	hgsc.bcm.edu	hg19	12	56214115	56214116	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	ORMDL2	NM_014182	exon4	c.397_398del	p.133_133del	.	.	142.0	36.0	177.0	0.0	.	8	.	.	Atlas-Indel,Pindel
TRPV6	55503	hgsc.bcm.edu	hg19	7	142574898	142574899	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	TRPV6	NM_018646	exon4	c.484_485del	p.162_162del	.	.	75.0	39.0	78.0	0.0	.	108	.	.	Atlas-Indel,Pindel
RAD54B	25788	hgsc.bcm.edu	hg19	8	95404076	95404077	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-A73C-01A-12D-A33K-10	TCGA-DD-A73C-10A-01D-A33K-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffe9f06b-c676-4f9f-8bc5-cd6a3db3f2ca	27060b4f-ef3b-4437-90c3-99ef91ddbc47	.	RAD54B	NM_012415	exon10	c.1570_1571del	p.524_524del	.	.	47.0	19.0	72.0	0.0	.	88	.	.	Atlas-Indel,Pindel