Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SDF4	51150	hgsc.bcm.edu	hg19	1	1152909	1152909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SDF4	NM_016176	exon7	c.G1072A	p.V358M	CGTGCACGCTGCG	.	74.0	18.0	59.0	0.0	.	50	.	.	Atlas-SNP
RBP7	116362	hgsc.bcm.edu	hg19	1	10068317	10068317	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RBP7	NM_052960	exon3	c.A339C	p.G113G	CGAAGGAGACAAA	.	102.0	11.0	112.0	0.0	.	11	.	.	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	hg19	1	42049187	42049187	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	HIVEP3,NS,adenocarcinoma,0,1	HIVEP3	NM_024503	exon4	c.C1282A	p.R428R	CGGTCCGCTGTCC	.	38.0	3.0	36.0	0.0	.	235	.	.	Atlas-SNP
USP1	7398	hgsc.bcm.edu	hg19	1	62914231	62914231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	USP1,NS,carcinoma,0,1	USP1	NM_001017415	exon8	c.T1516C	p.C506R	TATTTCTGTGAAA	.	152.0	19.0	198.0	0.0	.	51	.	.	Atlas-SNP
CAPZA1	829	hgsc.bcm.edu	hg19	1	113192072	113192072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CAPZA1	NM_006135	exon3	c.C136G	p.L46V	AATCTCCTCAGGG	.	105.0	25.0	132.0	0.0	.	16	.	.	Atlas-SNP
OTUD7B	56957	hgsc.bcm.edu	hg19	1	149915759	149915759	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OTUD7B	NM_020205	exon12	c.C2529T	p.F843F	CGTTCAGAACCTG	.	79.0	8.0	60.0	0.0	.	76	.	.	Atlas-SNP
CERS2	29956	hgsc.bcm.edu	hg19	1	150939260	150939260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_022075	exon9	c.A820G	p.I274V	GGGTGATGATAAA	.	114.0	7.0	90.0	0.0	.	.	.	.	Atlas-SNP
SMG5	23381	hgsc.bcm.edu	hg19	1	156237933	156237933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SMG5	NM_015327	exon9	c.T881C	p.L294P	CTTTGCAGATACA	.	154.0	11.0	171.0	0.0	.	98	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167095928	167095928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DUSP27	NM_001080426	exon5	c.G1560T	p.E520D	TGATGAGGACAGC	.	184.0	56.0	216.0	0.0	.	235	.	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175052888	175052888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TNN	NM_022093	exon5	c.C1051G	p.L351V	CTAGACCTTGCTG	.	46.0	16.0	42.0	0.0	.	297	.	.	Atlas-SNP
STX6	10228	hgsc.bcm.edu	hg19	1	180953892	180953892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	STX6	NM_005819	exon7	c.C612G	p.F204L	GTGAGAGAAATCT	.	50.0	4.0	61.0	0.0	.	21	.	.	Atlas-SNP
RRP15	51018	hgsc.bcm.edu	hg19	1	218475635	218475635	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RRP15	NM_016052	exon2	c.140-1G>A	.	TCTATAGGAAGCT	.	183.0	20.0	163.0	0.0	.	33	.	.	Atlas-SNP
RAB1A	5861	hgsc.bcm.edu	hg19	2	65331882	65331882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RAB1A	NM_004161	exon2	c.C82A	p.L28I	TAAGAAGAAGGCA	.	597.0	148.0	728.0	1.0	.	15	.	.	Atlas-SNP
RIF1	55183	hgsc.bcm.edu	hg19	2	152293757	152293757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RIF1	NM_018151	exon13	c.C1375T	p.P459S	TCAGAGCCATTGG	.	181.0	45.0	200.0	0.0	.	244	.	.	Atlas-SNP
ZNF385B	151126	hgsc.bcm.edu	hg19	2	180348008	180348008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF385B	NM_152520	exon6	c.G661T	p.D221Y	ATTTGTCAGAGTT	.	190.0	54.0	213.0	0.0	.	68	.	.	Atlas-SNP
SLC39A10	57181	hgsc.bcm.edu	hg19	2	196599744	196599744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLC39A10	NM_020342	exon10	c.T2475G	p.I825M	TAAAATTGTGTTT	.	184.0	17.0	219.0	0.0	.	89	.	.	Atlas-SNP
STK17B	9262	hgsc.bcm.edu	hg19	2	197008292	197008292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	STK17B	NM_004226	exon5	c.A599G	p.E200G	AAATATTCTGGTG	.	119.0	9.0	173.0	0.0	.	28	.	.	Atlas-SNP
SERPINE2	5270	hgsc.bcm.edu	hg19	2	224866553	224866553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SERPINE2	NM_001136530	exon2	c.T101C	p.F34S	GGATTGAAGTGGG	.	53.0	6.0	67.0	0.0	.	103	.	.	Atlas-SNP
ARMC9	80210	hgsc.bcm.edu	hg19	2	232079712	232079712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARMC9	NM_025139	exon4	c.C346T	p.P116S	GGGAGACCGGTGG	.	127.0	34.0	126.0	0.0	.	129	.	.	Atlas-SNP
SEC13	6396	hgsc.bcm.edu	hg19	3	10347279	10347279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SEC13	NM_183352	exon6	c.C548T	p.A183V	CCTGATGCAAACC	.	108.0	17.0	89.0	0.0	.	35	.	.	Atlas-SNP
CLEC3B	7123	hgsc.bcm.edu	hg19	3	45077344	45077344	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CLEC3B	NM_003278	exon3	c.G537A	p.A179A	AGGCGCGGCCAAC	.	85.0	14.0	76.0	0.0	.	15	.	.	Atlas-SNP
USP4	7375	hgsc.bcm.edu	hg19	3	49316327	49316327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	USP4	NM_003363	exon21	c.T2653C	p.Y885H	TCGCATATGCAGT	.	106.0	7.0	121.0	0.0	.	72	.	.	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	hg19	3	132175649	132175649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DNAJC13	NM_015268	exon12	c.G1322T	p.G441V	AAGCTGGTTTCCT	.	226.0	42.0	200.0	0.0	.	253	.	.	Atlas-SNP
MFN1	55669	hgsc.bcm.edu	hg19	3	179096495	179096495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MFN1	NM_033540	exon14	c.G1555A	p.D519N	CAAGAGGATATTG	.	199.0	28.0	262.0	0.0	.	72	.	.	Atlas-SNP
MFI2	4241	hgsc.bcm.edu	hg19	3	196744154	196744154	+	Silent	SNP	C	C	T	rs375237562	bycluster	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MFI2	NM_005929	exon7	c.G720A	p.T240T	GGGAAGCGTCTTC	.	104.0	27.0	123.0	0.0	.	88	.	.	Atlas-SNP
RNF212	285498	hgsc.bcm.edu	hg19	4	1107222	1107222	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RNF212	NM_194439	exon1	c.T31A	p.F11I	GCTGGAAGCAGCG	.	100.0	28.0	107.0	0.0	.	69	.	.	Atlas-SNP
POLR2B	5431	hgsc.bcm.edu	hg19	4	57889912	57889912	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	POLR2B	NM_000938	exon20	c.C2851T	p.Q951X	TATAGACAAGAGG	.	175.0	16.0	204.0	0.0	.	108	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114279036	114279036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ANK2	NM_001148	exon38	c.C9262G	p.P3088A	AGGACCCCAACTG	.	52.0	15.0	80.0	0.0	.	576	.	.	Atlas-SNP
CCDC111	201973	hgsc.bcm.edu	hg19	4	185606652	185606652	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CCDC111	NM_152683	exon10	c.G1186T	p.G396X	AAAGGAGGTAAAG	.	237.0	75.0	333.0	0.0	.	43	.	.	Atlas-SNP
SLC6A18	348932	hgsc.bcm.edu	hg19	5	1245974	1245974	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLC6A18	NM_182632	exon12	c.C1668G	p.P556P	GTTCCCCTCGCGT	.	101.0	20.0	85.0	0.0	.	84	.	.	Atlas-SNP
OTP	23440	hgsc.bcm.edu	hg19	5	76932919	76932919	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OTP	NM_032109	exon2	c.G174T	p.L58L	CCCGGGCAGCAGA	.	76.0	13.0	75.0	0.0	.	29	.	.	Atlas-SNP
ZFYVE16	9765	hgsc.bcm.edu	hg19	5	79733274	79733274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZFYVE16	NM_001105251	exon4	c.A770G	p.H257R	TGTTTCATGCCAA	.	250.0	16.0	224.0	0.0	.	100	.	.	Atlas-SNP
ATG10	83734	hgsc.bcm.edu	hg19	5	81474399	81474399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATG10	NM_001131028	exon6	c.C446T	p.T149M	CTATTACGCAACA	.	161.0	11.0	126.0	0.0	.	23	.	.	Atlas-SNP
NUDT12	83594	hgsc.bcm.edu	hg19	5	102886634	102886634	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NUDT12	NM_031438	exon7	c.C1317T	p.F439F	CACAAAGAATGCC	.	123.0	25.0	121.0	0.0	.	27	.	.	Atlas-SNP
CHSY3	337876	hgsc.bcm.edu	hg19	5	129520172	129520172	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CHSY3	NM_175856	exon3	c.T1337A	p.L446Q	AGCAGCTGGGAGT	.	172.0	7.0	178.0	0.0	.	92	.	.	Atlas-SNP
PCDH1	5097	hgsc.bcm.edu	hg19	5	141244054	141244054	+	Silent	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PCDH1	NM_032420	exon3	c.G1842C	p.L614L	GCCACTCAGCATA	.	55.0	8.0	64.0	0.0	.	119	.	.	Atlas-SNP
ARHGEF37	389337	hgsc.bcm.edu	hg19	5	149003635	149003635	+	Missense_Mutation	SNP	C	C	T	rs369747296		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARHGEF37	NM_001001669	exon10	c.C1396T	p.R466W	CTGGGCCGGACGA	.	66.0	4.0	48.0	0.0	.	45	.	.	Atlas-SNP
CAMK2A	815	hgsc.bcm.edu	hg19	5	149631366	149631366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CAMK2A	NM_171825	exon9	c.T640C	p.W214R	CATCCCAGAACGG	.	171.0	9.0	162.0	0.0	.	42	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167625964	167625964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_001122679	exon16	c.G2980A	p.A994T	TTTTACGCCATGG	.	112.0	21.0	96.0	0.0	.	.	.	.	Atlas-SNP
NHP2	55651	hgsc.bcm.edu	hg19	5	177577899	177577899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NHP2	NM_017838	exon3	c.C326T	p.P109L	TTAGAGGGGATAT	.	50.0	11.0	46.0	0.0	.	12	.	.	Atlas-SNP
ZFP62	643836	hgsc.bcm.edu	hg19	5	180276368	180276368	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZFP62	NM_001172638	exon2	c.T2127G	p.A709A	GAAAAAAGCTTTT	.	95.0	8.0	98.0	0.0	.	33	.	.	Atlas-SNP
ELOVL2	54898	hgsc.bcm.edu	hg19	6	10995354	10995354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ELOVL2	NM_017770	exon5	c.A391C	p.I131L	AGAAAATTGTGTC	.	172.0	51.0	247.0	0.0	.	40	.	.	Atlas-SNP
EGFL8	80864	hgsc.bcm.edu	hg19	6	32134918	32134918	+	Missense_Mutation	SNP	C	C	A	rs370079247	alternate_allele	TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	EGFL8	NM_030652	exon6	c.C485A	p.T162K	TTAATACGGCAGG	.	80.0	19.0	82.0	0.0	.	15	.	.	Atlas-SNP
ZNF76	7629	hgsc.bcm.edu	hg19	6	35255576	35255576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF76	NM_003427	exon5	c.G386T	p.G129V	ATGAGGGCTTCAG	.	48.0	13.0	64.0	0.0	.	37	.	.	Atlas-SNP
RFPL4B	442247	hgsc.bcm.edu	hg19	6	112671285	112671285	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RFPL4B	NM_001013734	exon3	c.T375A	p.D125E	CCACGATCTGACA	.	54.0	5.0	66.0	0.0	.	36	.	.	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	hg19	6	155458347	155458347	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TIAM2	NM_012454	exon4	c.A1231T	p.S411C	TTTGACAGTCGCT	.	72.0	6.0	96.0	0.0	.	161	.	.	Atlas-SNP
CYP2W1	54905	hgsc.bcm.edu	hg19	7	1024648	1024648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CYP2W1	NM_017781	exon3	c.C400T	p.H134Y	GCCCTGCACAGCC	.	63.0	9.0	36.0	0.0	.	28	.	.	Atlas-SNP
EEPD1	80820	hgsc.bcm.edu	hg19	7	36336619	36336619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	EEPD1	NM_030636	exon7	c.A1333G	p.I445V	GTCATTATCTTAG	.	155.0	20.0	119.0	0.0	.	47	.	.	Atlas-SNP
TBL2	26608	hgsc.bcm.edu	hg19	7	72985569	72985569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TBL2	NM_012453	exon6	c.G828T	p.K276N	GTGGCCCTTTAGT	.	144.0	27.0	135.0	0.0	.	47	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82764470	82764470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PCLO	NM_014510	exon3	c.C2396G	p.S799C	TTGGCAGAGTCTG	.	234.0	15.0	216.0	0.0	.	1506	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83643565	83643565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SEMA3A	NM_006080	exon7	c.C770A	p.S257Y	TTTCCAGAGTGTT	.	106.0	13.0	93.0	0.0	.	121	.	.	Atlas-SNP
DMTF1	9988	hgsc.bcm.edu	hg19	7	86824435	86824435	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DMTF1	NM_001142327	exon18	c.A2262T	p.E754D	TGTCGAAGATTTG	.	280.0	51.0	212.0	0.0	.	48	.	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	hg19	7	88964910	88964910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF804B	NM_181646	exon4	c.C2614A	p.Q872K	AGAAATCAAGAGT	.	273.0	35.0	193.0	0.0	.	322	.	.	Atlas-SNP
ANKIB1	54467	hgsc.bcm.edu	hg19	7	92027849	92027849	+	Silent	SNP	A	A	G	rs374467744		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ANKIB1	NM_019004	exon20	c.A2856G	p.S952S	TCCCTCATCTAGT	.	121.0	15.0	97.0	0.0	.	92	.	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	hg19	7	98580989	98580989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TRRAP	NM_001244580	exon59	c.G8908A	p.V2970M	AAGACGGTGGTGA	.	185.0	37.0	139.0	0.0	.	863	.	.	Atlas-SNP
NYAP1	222950	hgsc.bcm.edu	hg19	7	100086033	100086033	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	.	NM_173564	exon4	c.G689C	p.S230T	GACGAAGTGGAGG	.	105.0	20.0	81.0	0.0	.	.	.	.	Atlas-SNP
NUP205	23165	hgsc.bcm.edu	hg19	7	135303347	135303347	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NUP205	NM_015135	exon28	c.A3959C	p.D1320A	TGCATGATAAGGT	.	72.0	11.0	65.0	0.0	.	198	.	.	Atlas-SNP
ZNF212	7988	hgsc.bcm.edu	hg19	7	148949877	148949877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF212	NM_012256	exon4	c.G622A	p.A208T	GGTGGTGCCCACC	.	87.0	7.0	57.0	0.0	.	28	.	.	Atlas-SNP
CHPF2	54480	hgsc.bcm.edu	hg19	7	150935740	150935740	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CHPF2	NM_019015	exon4	c.T2292A	p.F764L	TCTCTTTGAGCAG	.	61.0	6.0	48.0	0.0	.	52	.	.	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	hg19	7	153750014	153750014	+	Missense_Mutation	SNP	G	G	A	rs2240820		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DPP6	NM_130797	exon1	c.G109A	p.G37S	GAGGACGGCGGCG	.	28.0	8.0	9.0	0.0	.	383	.	.	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	hg19	8	36666269	36666269	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KCNU1	NM_001031836	exon7	c.A690C	p.I230I	GTCAATAATTCTC	.	94.0	12.0	154.0	0.0	.	359	.	.	Atlas-SNP
XKR4	114786	hgsc.bcm.edu	hg19	8	56015167	56015167	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	XKR4	NM_052898	exon1	c.C119A	p.S40X	TGCCGTCGGGGTC	.	84.0	22.0	76.0	0.0	.	104	.	.	Atlas-SNP
RNF19A	25897	hgsc.bcm.edu	hg19	8	101271389	101271389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RNF19A	NM_015435	exon11	c.G1912T	p.D638Y	TGCCATCATCCAC	.	39.0	4.0	39.0	0.0	.	67	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113519059	113519059	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CSMD3	NM_052900	exon29	c.4445-1G>T	.	AGGGTGCTTTAAT	.	115.0	8.0	162.0	0.0	.	2325	.	.	Atlas-SNP
NOV	4856	hgsc.bcm.edu	hg19	8	120430376	120430376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NOV	NM_002514	exon3	c.A389G	p.Q130R	AATTCCAGTGCAC	.	95.0	28.0	95.0	0.0	.	51	.	.	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	hg19	8	142176419	142176419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DENND3	NM_014957	exon12	c.C1444A	p.P482T	GCCATGCCTGAGC	.	43.0	17.0	45.0	0.0	.	127	.	.	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	hg19	8	145113709	145113709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OPLAH	NM_017570	exon5	c.G554A	p.R185H	AGGCTGCGGATGC	.	49.0	14.0	66.0	0.0	.	78	.	.	Atlas-SNP
OR13D1	286365	hgsc.bcm.edu	hg19	9	107457351	107457351	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR13D1	NM_001004484	exon1	c.C649T	p.L217L	GCCCTTCTAAAAC	.	151.0	35.0	178.0	0.0	.	42	.	.	Atlas-SNP
URM1	81605	hgsc.bcm.edu	hg19	9	131151593	131151593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	URM1	NM_001135947	exon4	c.G242T	p.S81I	TGGTCAGTACCTT	.	75.0	13.0	45.0	0.0	.	19	.	.	Atlas-SNP
C9orf9	11092	hgsc.bcm.edu	hg19	9	135763682	135763682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	C9orf9	NM_018956	exon4	c.C353G	p.P118R	GATACCCTCATGA	.	148.0	32.0	142.0	0.0	.	10	.	.	Atlas-SNP
USP6NL	9712	hgsc.bcm.edu	hg19	10	11505005	11505005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	USP6NL	NM_001080491	exon14	c.A1973C	p.N658T	GGAGAGTTTCCGT	.	48.0	6.0	43.0	0.0	.	57	.	.	Atlas-SNP
MPP7	143098	hgsc.bcm.edu	hg19	10	28378706	28378706	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MPP7	NM_173496	exon14	c.A1017G	p.E339E	CTTGCATTCATAC	.	96.0	11.0	116.0	0.0	.	60	.	.	Atlas-SNP
RET	5979	hgsc.bcm.edu	hg19	10	43598063	43598063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	RET	NM_020630	exon3	c.A611G	p.Y204C	TGGCCTACAGGCT	.	34.0	6.0	61.0	0.0	.	916	.	.	Atlas-SNP
ARID5B	84159	hgsc.bcm.edu	hg19	10	63850753	63850753	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ARID5B	NM_032199	exon10	c.A1531T	p.R511X	GCATCCAGAGTAG	.	150.0	16.0	168.0	0.0	.	125	.	.	Atlas-SNP
SLIT1	6585	hgsc.bcm.edu	hg19	10	98762480	98762480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLIT1	NM_003061	exon35	c.G4135A	p.G1379S	AGGGGCCGTCAGC	.	31.0	7.0	48.0	0.0	.	154	.	.	Atlas-SNP
TCF7L2	6934	hgsc.bcm.edu	hg19	10	114912183	114912183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TCF7L2	NM_001146283	exon11	c.C1325A	p.S442Y	GCTGGTCCGCGCG	.	59.0	7.0	48.0	0.0	.	298	.	.	Atlas-SNP
OR5D18	219438	hgsc.bcm.edu	hg19	11	55587564	55587564	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	OR5D18,NS,carcinoma,+2,1	OR5D18	NM_001001952	exon1	c.A459T	p.G153G	CTGGGGAGTCTCA	.	150.0	29.0	152.0	0.0	.	121	.	.	Atlas-SNP
OR8K1	390157	hgsc.bcm.edu	hg19	11	56113645	56113645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR8K1	NM_001002907	exon1	c.C131A	p.T44K	TGGTCACAGTGAT	.	120.0	25.0	118.0	0.0	.	93	.	.	Atlas-SNP
MMP13	4322	hgsc.bcm.edu	hg19	11	102826222	102826222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	MMP13,colon,carcinoma,+1,2	MMP13	NM_002427	exon2	c.C121T	p.R41C	GGTAGCGCTAGAA	.	73.0	19.0	70.0	0.0	.	75	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103060527	103060527	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DYNC2H1	NM_001377	exon45	c.G7419C	p.M2473I	ATCTATGGTACAA	.	79.0	11.0	91.0	0.0	.	246	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103229042	103229042	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DYNC2H1	NM_001080463	exon84	c.T12132C	p.S4044S	CTGGTCTAATGAA	.	101.0	7.0	113.0	0.0	.	246	.	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108114704	108114704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATM	NM_000051	exon6	c.T521G	p.L174R	TCAGGCTCTATCT	.	288.0	67.0	287.0	0.0	.	1657	.	.	Atlas-SNP
CCDC84	338657	hgsc.bcm.edu	hg19	11	118869172	118869172	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CCDC84	NM_198489	exon2	c.T153G	p.A51A	CGCCGCTCAGGTG	.	45.0	7.0	58.0	0.0	.	21	.	.	Atlas-SNP
IQSEC3	440073	hgsc.bcm.edu	hg19	12	274692	274692	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IQSEC3	NM_001170738	exon10	c.G2802C	p.E934D	CTTTGAGAACGAG	.	80.0	6.0	89.0	0.0	.	154	.	.	Atlas-SNP
IQSEC3	440073	hgsc.bcm.edu	hg19	12	274696	274696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IQSEC3	NM_001170738	exon10	c.G2806C	p.E936Q	GAGAACGAGTGTA	.	79.0	7.0	86.0	0.0	.	154	.	.	Atlas-SNP
LETMD1	25875	hgsc.bcm.edu	hg19	12	51442826	51442826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	LETMD1	NM_001243689	exon2	c.G132T	p.K44N	TTCAAAGCTTCAC	.	67.0	20.0	92.0	0.0	.	33	.	.	Atlas-SNP
NXPH4	11247	hgsc.bcm.edu	hg19	12	57619424	57619424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	NXPH4	NM_007224	exon2	c.T821C	p.F274S	AGCCCTTCAAAGT	.	50.0	18.0	51.0	0.0	.	40	.	.	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	hg19	13	28942739	28942739	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FLT1	NM_001160030	exon15	c.A2178G	p.S726S	TGACGATGATGAT	.	79.0	5.0	49.0	0.0	.	393	.	.	Atlas-SNP
ATP7B	540	hgsc.bcm.edu	hg19	13	52542657	52542657	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATP7B	NM_000053	exon4	c.C1630G	p.Q544E	TGAACTGAGCTAT	.	98.0	10.0	106.0	0.0	.	123	.	.	Atlas-SNP
IRS2	8660	hgsc.bcm.edu	hg19	13	110436226	110436226	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	IRS2	NM_003749	exon1	c.C2175T	p.G725G	GTAGCCGCCCCCG	.	26.0	5.0	29.0	0.0	.	44	.	.	Atlas-SNP
OR4M1	441670	hgsc.bcm.edu	hg19	14	20248815	20248815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	OR4M1	NM_001005500	exon1	c.A334G	p.M112V	TCGGAGATGTTCT	.	208.0	25.0	237.0	0.0	.	104	.	.	Atlas-SNP
TMEM63C	57156	hgsc.bcm.edu	hg19	14	77705090	77705090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	TMEM63C	NM_020431	exon10	c.A705T	p.E235D	CCCAGAACTCATC	.	113.0	24.0	150.0	0.0	.	77	.	.	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	hg19	14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC	.	22.0	3.0	14.0	0.0	.	108	.	.	Atlas-SNP
MAPK6	5597	hgsc.bcm.edu	hg19	15	52356857	52356857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAPK6	NM_002748	exon6	c.A1826G	p.Q609R	TAAATCAGTTTTG	.	379.0	22.0	381.0	0.0	.	70	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62146685	62146685	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	VPS13C	NM_020821	exon85	c.A11233C	p.R3745R	GAAGTCTCACTGA	.	100.0	28.0	93.0	0.0	.	506	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86273887	86273887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AKAP13	NM_006738	exon30	c.A7243G	p.T2415A	TCCAACACAGAAG	.	73.0	15.0	75.0	0.0	.	394	.	.	Atlas-SNP
MFGE8	4240	hgsc.bcm.edu	hg19	15	89443027	89443027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MFGE8	NM_005928	exon7	c.T886A	p.S296T	CCTTCGAGGAGCC	.	93.0	20.0	79.0	0.0	.	60	.	.	Atlas-SNP
BLM	641	hgsc.bcm.edu	hg19	15	91347543	91347543	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BLM	NM_000057	exon19	c.C3705A	p.V1235V	TGGTGTCCATTAC	.	188.0	41.0	173.0	0.0	.	122	.	.	Atlas-SNP
MAN2A2	4122	hgsc.bcm.edu	hg19	15	91448631	91448631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAN2A2	NM_006122	exon2	c.A283G	p.N95D	ACGGTCAATGGCT	.	66.0	6.0	68.0	0.0	.	99	.	.	Atlas-SNP
KIAA0430	9665	hgsc.bcm.edu	hg19	16	15727524	15727524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	KIAA0430	NM_014647	exon5	c.G1183A	p.D395N	TGATGTCACATAC	.	77.0	7.0	90.0	0.0	.	154	.	.	Atlas-SNP
ALDOA	226	hgsc.bcm.edu	hg19	16	30080632	30080632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ALDOA	NM_001243177	exon7	c.C708T	p.G236G	GAATGGCATTGTG	.	60.0	18.0	96.0	0.0	.	33	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88502140	88502140	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZNF469	NM_001127464	exon2	c.G8178A	p.G2726G	AAGGGGGTTCTGG	.	67.0	19.0	83.0	0.0	.	121	.	.	Atlas-SNP
CDH15	1013	hgsc.bcm.edu	hg19	16	89258218	89258218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CDH15	NM_004933	exon10	c.C1531T	p.P511S	GACCTGCCCCCCC	.	47.0	10.0	49.0	0.0	.	54	.	.	Atlas-SNP
SMG6	23293	hgsc.bcm.edu	hg19	17	2200545	2200545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SMG6	NM_017575	exon4	c.C2143T	p.R715C	TCTTGCGTAATGG	.	75.0	19.0	86.0	0.0	.	97	.	.	Atlas-SNP
SNX11	29916	hgsc.bcm.edu	hg19	17	46196421	46196421	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SNX11	NM_013323	exon6	c.T412A	p.C138S	GAAGCCTGTGTCC	.	53.0	7.0	83.0	0.0	.	20	.	.	Atlas-SNP
SUPT4H1	6827	hgsc.bcm.edu	hg19	17	56423671	56423671	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SUPT4H1	NM_003168	exon5	c.T290A	p.I97N	CGCACGATTCCTG	.	52.0	13.0	50.0	0.0	.	11	.	.	Atlas-SNP
AMZ2	51321	hgsc.bcm.edu	hg19	17	66252013	66252013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AMZ2	NM_001033572	exon7	c.A923G	p.Y308C	AAAGATACAAAGT	.	42.0	10.0	49.0	0.0	.	15	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80039092	80039092	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	FASN	NM_004104	exon38	c.A6543G	p.Q2181Q	CGTGAGTTGCCGC	.	75.0	16.0	63.0	0.0	.	154	.	.	Atlas-SNP
ATP8B3	148229	hgsc.bcm.edu	hg19	19	1796715	1796715	+	Missense_Mutation	SNP	C	C	T	rs371318224		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATP8B3	NM_138813	exon16	c.G1748A	p.R583H	CCTGGGCGCTCAC	.	83.0	18.0	87.0	0.0	.	108	.	.	Atlas-SNP
ADAMTS10	81794	hgsc.bcm.edu	hg19	19	8651245	8651245	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ADAMTS10	NM_030957	exon21	c.C2513G	p.S838W	TGGGCCGAGCACT	.	144.0	39.0	122.0	0.0	.	132	.	.	Atlas-SNP
MAST3	23031	hgsc.bcm.edu	hg19	19	18255828	18255828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MAST3	NM_015016	exon23	c.G2741C	p.G914A	GCGGCGGCCCCCT	.	51.0	5.0	41.0	0.0	.	83	.	.	Atlas-SNP
ZFP14	57677	hgsc.bcm.edu	hg19	19	36831783	36831783	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ZFP14	NM_020917	exon5	c.G945A	p.K315K	ACATTCCTTACAT	.	68.0	16.0	76.0	0.0	.	68	.	.	Atlas-SNP
BCL3	602	hgsc.bcm.edu	hg19	19	45260419	45260419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BCL3	NM_005178	exon4	c.G665A	p.R222Q	GCCTGCGAGCCCT	.	49.0	5.0	39.0	0.0	.	28	.	.	Atlas-SNP
GRIN2D	2906	hgsc.bcm.edu	hg19	19	48945414	48945414	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	GRIN2D,colon,carcinoma,0,1	GRIN2D	NM_000836	exon12	c.C2448T	p.I816I	TGAGATCGAGATG	.	46.0	9.0	58.0	0.0	.	76	.	.	Atlas-SNP
MYBPC2	4606	hgsc.bcm.edu	hg19	19	50958840	50958840	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	MYBPC2	NM_004533	exon20	c.T2277C	p.P759P	GAGGCCTCCGAAC	.	56.0	7.0	60.0	0.0	.	103	.	.	Atlas-SNP
VPS16	64601	hgsc.bcm.edu	hg19	20	2842263	2842263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	VPS16	NM_022575	exon9	c.G812T	p.C271F	ACAGGTGCAGCCG	.	23.0	7.0	36.0	0.0	.	76	.	.	Atlas-SNP
VPS16	64601	hgsc.bcm.edu	hg19	20	2842264	2842264	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	VPS16	NM_022575	exon9	c.C813T	p.C271C	CAGGTGCAGCCGT	.	22.0	7.0	37.0	0.0	.	76	.	.	Atlas-SNP
VPS16	64601	hgsc.bcm.edu	hg19	20	2842265	2842265	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	VPS16	NM_022575	exon9	c.A814T	p.S272C	AGGTGCAGCCGTC	.	25.0	7.0	37.0	0.0	.	76	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41459179	41459179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DSCAM	NM_001271534	exon22	c.A3886T	p.T1296S	GAGTAGTCACTGT	.	90.0	14.0	82.0	0.0	.	347	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41684133	41684133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DSCAM	NM_001271534	exon9	c.A1937G	p.D646G	ATATTGTCAATGG	.	135.0	36.0	137.0	0.0	.	347	.	.	Atlas-SNP
SFI1	9814	hgsc.bcm.edu	hg19	22	32007130	32007130	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	SFI1,colon,carcinoma,0,1	SFI1	NM_001007467	exon23	c.C2256T	p.G752G	CTTAGGCTGTCTG	.	63.0	14.0	92.0	0.0	.	78	.	.	Atlas-SNP
GRAP2	9402	hgsc.bcm.edu	hg19	22	40366916	40366916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	GRAP2	NM_004810	exon8	c.G821A	p.R274Q	GAGTGCGGTGGGC	.	41.0	10.0	45.0	0.0	.	29	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66766356	66766356	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	AR	NM_000044	exon1	c.T1368C	p.G456G	GGGTGGTGGCGGC	.	31.0	6.0	9.0	0.0	.	249	.	.	Atlas-SNP
POU3F4	5456	hgsc.bcm.edu	hg19	X	82763684	82763684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	POU3F4	NM_000307	exon1	c.C352T	p.P118S	GCCAGCCCGGCAC	.	151.0	8.0	102.0	0.0	.	136	.	.	Atlas-SNP
DCAF12L1	139170	hgsc.bcm.edu	hg19	X	125685427	125685427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DCAF12L1	NM_178470	exon1	c.G1165A	p.A389T	GGGTGGCGGAGGC	.	94.0	8.0	73.0	0.0	.	135	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142717871	142717871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	SLITRK4	NM_001184750	exon2	c.C1054A	p.P352T	CTGAAGGGTGTGT	.	106.0	37.0	107.0	0.0	.	162	.	.	Atlas-SNP
PRRG3	79057	hgsc.bcm.edu	hg19	X	150869170	150869170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	PRRG3	NM_024082	exon4	c.C361A	p.L121I	CGGTACCTAGCCA	.	101.0	11.0	79.0	0.0	.	74	.	.	Atlas-SNP
L1CAM	3897	hgsc.bcm.edu	hg19	X	153133461	153133461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	L1CAM	NM_000425	exon14	c.T1820C	p.L607S	ACCACCAAGAGCT	.	43.0	8.0	35.0	0.0	.	189	.	.	Atlas-SNP
F8	2157	hgsc.bcm.edu	hg19	X	154158630	154158630	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	F8	NM_000132	exon14	c.A3435G	p.P1145P	TTGCTTTGGACTG	.	127.0	18.0	94.0	0.0	.	646	.	.	Atlas-SNP
ATP6V1A	523	hgsc.bcm.edu	hg19	3	113513944	113513952	+	In_Frame_Del	DEL	ATATCCAGC	ATATCCAGC	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	ATATCCAGC	ATATCCAGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	ATP6V1A	NM_001690	exon10	c.1118_1126del	p.373_376del	.	.	96.0	15.0	105.0	0.0	.	71	.	.	Atlas-Indel,Pindel
COL4A4	1286	hgsc.bcm.edu	hg19	2	227963497	227963499	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	COL4A4	NM_000092	exon19	c.1116_1118del	p.372_373del	.	.	110.0	20.0	161.0	0.0	.	215	.	.	Atlas-INDEL
DHX29	54505	hgsc.bcm.edu	hg19	5	54586093	54586096	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	DHX29	NM_019030	exon7	c.858_861del	p.286_287del	.	.	137.0	25.0	141.0	0.0	.	116	.	.	Atlas-Indel,Pindel
C6orf62	81688	hgsc.bcm.edu	hg19	6	24718827	24718828	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.,1	C6orf62	NM_030939	exon1	c.70_71insA	p.E24fs	.	.	133.0	16.0	173.0	0.0	.	18	.	.	Atlas-Indel,Pindel
CLGN	1047	hgsc.bcm.edu	hg19	4	141313515	141313531	+	Frame_Shift_Del	DEL	TGTATCTTTATGTTTTT	TGTATCTTTATGTTTTT	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	TGTATCTTTATGTTTTT	TGTATCTTTATGTTTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	CLGN	NM_001130675	exon14	c.1494_1510del	p.498_504del	.	.	84.0	17.0	117.0	0.0	.	76	.	.	Atlas-Indel,Pindel
COL4A4	1286	hgsc.bcm.edu	hg19	2	227963489	227963494	+	In_Frame_Del	DEL	AGGGAA	AGGGAA	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	AGGGAA	AGGGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	COL4A4	NM_000092	exon19	c.1121_1126del	p.374_376del	.	.	112.0	20.0	162.0	0.0	.	215	.	.	Atlas-INDEL
COL4A4	1286	hgsc.bcm.edu	hg19	2	227963489	227963499	+	Frame_Shift_Del	DEL	AGGGAACCCTG	AGGGAACCCTG	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	AGGGAACCCTG	AGGGAACCCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	COL4A4	NM_000092	exon19	c.1116_1126del	p.372_376del	.	.	113.0	18.0	163.0	0.0	.	215	.	.	Pindel
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136582246	136582439	+	Frame_Shift_Del	DEL	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-	novel		TCGA-DD-A4NV-01A-11D-A30V-10	TCGA-DD-A4NV-10A-01D-A30V-10	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3e5656c7-1284-4d60-92d5-12b88c3cb840	812b8551-4906-486e-84de-08451638352a	.	BCLAF1	NM_014739	exon13	c.2758_3016del	p.920_921del	.	.	338.0	17.0	465.0	0.0	.	203	.	.	Pindel