Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ARID1A	8289	hgsc.bcm.edu	hg19	1	27101142	27101142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ARID1A	NM_006015	exon18	c.A4424C	p.N1475T	AGCAAAACATGCC	.	57.0	11.0	38.0	0.0	.	842	.	.	Atlas-SNP
ADCY10	55811	hgsc.bcm.edu	hg19	1	167849404	167849404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ADCY10	NM_018417	exon11	c.G1165A	p.G389R	CAATCCCACTGGC	.	144.0	18.0	103.0	0.0	.	175	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	176999968	176999968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ASTN1	NM_004319	exon4	c.G986A	p.R329K	CGCTTTCTCTGGC	.	84.0	15.0	79.0	0.0	.	314	.	.	Atlas-SNP
DIEXF	27042	hgsc.bcm.edu	hg19	1	210015748	210015748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	DIEXF	NM_014388	exon9	c.A1624G	p.I542V	GCCCAGATCAACT	.	115.0	15.0	53.0	0.0	.	97	.	.	Atlas-SNP
SLC4A5	57835	hgsc.bcm.edu	hg19	2	74482906	74482906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SLC4A5	NM_021196	exon8	c.A1021T	p.T341S	ACCTGGTGGGGAC	.	38.0	9.0	32.0	0.0	.	215	.	.	Atlas-SNP
ACVR2B	93	hgsc.bcm.edu	hg19	3	38519668	38519668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ACVR2B	NM_001106	exon4	c.T407C	p.L136P	CCCTGCTCACGGT	.	42.0	8.0	28.0	0.0	.	88	.	.	Atlas-SNP
AADAC	13	hgsc.bcm.edu	hg19	3	151545468	151545468	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AADAC	NM_001086	exon5	c.A708G	p.S236S	AAATTCAAATTTT	.	122.0	21.0	111.0	0.0	.	49	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195511994	195511994	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MUC4	NM_018406	exon2	c.G6457C	p.V2153L	TGGATACTGAGGA	.	75.0	8.0	70.0	0.0	.	1505	.	.	Atlas-SNP
CDS1	1040	hgsc.bcm.edu	hg19	4	85540553	85540553	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CDS1	NM_001263	exon5	c.T447C	p.F149F	GTACTTTCTATTG	.	106.0	13.0	93.0	0.0	.	58	.	.	Atlas-SNP
SEC24A	10802	hgsc.bcm.edu	hg19	5	133997208	133997208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SEC24A	NM_001252231	exon2	c.G497T	p.S166I	ATACAAGTTTAAC	.	113.0	15.0	93.0	0.0	.	77	.	.	Atlas-SNP
PCDHGA10	56106	hgsc.bcm.edu	hg19	5	140792839	140792839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PCDHGA10	NM_032090	exon1	c.C97T	p.R33W	GGAGCCCGGCAGA	.	81.0	17.0	64.0	0.0	.	114	.	.	Atlas-SNP
GEMIN5	25929	hgsc.bcm.edu	hg19	5	154311018	154311018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	GEMIN5,NS,carcinoma,0,1	GEMIN5	NM_015465	exon5	c.G781A	p.G261R	TCTTACCTCGGCC	.	91.0	27.0	53.0	0.0	.	120	.	.	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	hg19	6	15452356	15452356	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	JARID2	NM_004973	exon4	c.C443G	p.S148C	ACCTCTCTAAAAG	.	71.0	21.0	55.0	0.0	.	135	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	hg19	6	45390432	45390432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RUNX2	NM_001024630	exon3	c.A161C	p.Q54P	AGCAACAGCAGCA	.	73.0	11.0	58.0	0.0	.	128	.	.	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	hg19	6	76023702	76023702	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	FILIP1,rectum,carcinoma,0,1	FILIP1	NM_015687	exon5	c.C1846T	p.R616X	CTTTTCGTGACCT	.	97.0	4.0	73.0	0.0	.	173	.	.	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	hg19	7	34014331	34014331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	BMPER	NM_133468	exon7	c.G511A	p.V171M	GAGGGTGTGCAGT	.	129.0	14.0	127.0	0.0	.	131	.	.	Atlas-SNP
PUS7	54517	hgsc.bcm.edu	hg19	7	105121549	105121549	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PUS7	NM_019042	exon9	c.T1125C	p.Y375Y	CATTCCATAGTAG	.	122.0	24.0	98.0	0.0	.	59	.	.	Atlas-SNP
XKR6	286046	hgsc.bcm.edu	hg19	8	10782237	10782237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	XKR6	NM_173683	exon2	c.C868A	p.L290M	GGCGCAGCATGTT	.	44.0	10.0	27.0	0.0	.	85	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	114031312	114031312	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.,1	CSMD3	NM_052900	exon6	c.T1014C	p.F338F	AGCACTAAATCCA	.	97.0	6.0	63.0	0.0	.	2325	.	.	Atlas-SNP
WEE1	7465	hgsc.bcm.edu	hg19	11	9597784	9597784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	WEE1	NM_003390	exon3	c.G790A	p.G264S	TCCTGTGGTGAAG	.	149.0	21.0	143.0	0.0	.	54	.	.	Atlas-SNP
SLC22A8	9376	hgsc.bcm.edu	hg19	11	62782428	62782428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	SLC22A8,NS,carcinoma,0,1	SLC22A8	NM_001184732	exon2	c.G3A	p.M1I	GAAGGTCATGGCA	.	39.0	11.0	28.0	0.0	.	60	.	.	Atlas-SNP
PITPNM1	9600	hgsc.bcm.edu	hg19	11	67261260	67261260	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PITPNM1	NM_004910	exon21	c.C3057A	p.G1019G	CTCCGTGCCGCGG	.	59.0	9.0	58.0	0.0	.	84	.	.	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	hg19	12	29598311	29598311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	OVCH1	NM_183378	exon23	c.C2781A	p.Y927X	CATTGAGTAAAGT	.	91.0	14.0	55.0	0.0	.	195	.	.	Atlas-SNP
SP7	121340	hgsc.bcm.edu	hg19	12	53722106	53722106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SP7	NM_152860	exon2	c.C1120T	p.R374C	GGGTGCGCTGGTG	.	45.0	18.0	39.0	0.0	.	30	.	.	Atlas-SNP
MYBPC1	4604	hgsc.bcm.edu	hg19	12	102076403	102076403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MYBPC1	NM_002465	exon30	c.C3455T	p.T1152I	TAAATACCCCTGG	.	144.0	31.0	99.0	0.0	.	235	.	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	hg19	14	65241980	65241980	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SPTB	NM_001024858	exon22	c.C4705T	p.L1569L	CCCGCAGCCTGTC	.	45.0	9.0	35.0	0.0	.	378	.	.	Atlas-SNP
RPAP1	26015	hgsc.bcm.edu	hg19	15	41816168	41816168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RPAP1	NM_015540	exon17	c.A2237G	p.D746G	GCAGAATCACTAC	.	59.0	8.0	44.0	0.0	.	111	.	.	Atlas-SNP
FBXL19	54620	hgsc.bcm.edu	hg19	16	30938694	30938694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	FBXL19	NM_001099784	exon3	c.G303T	p.E101D	GGTGGAGGGAGAG	.	71.0	4.0	64.0	0.0	.	74	.	.	Atlas-SNP
SPG7	6687	hgsc.bcm.edu	hg19	16	89574985	89574985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SPG7	NM_199367	exon1	c.G160A	p.E54K	CTCGCCGAGGCTG	.	34.0	6.0	16.0	0.0	.	75	.	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	hg19	17	10395803	10395803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MYH1	NM_005963	exon40	c.C5750T	p.A1917V	GACTCAGCAATGT	.	124.0	20.0	75.0	0.0	.	403	.	.	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79100253	79100253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AATK	NM_001080395	exon7	c.C729A	p.H243Q	ATGAAGGTGCAGG	.	90.0	14.0	68.0	0.0	.	102	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610300	10610300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KEAP1	NM_012289	exon2	c.T410C	p.I137T	AATTCAATGAGGC	.	53.0	5.0	41.0	0.0	.	182	.	.	Atlas-SNP
TST	7263	hgsc.bcm.edu	hg19	22	37414605	37414605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	TST	NM_003312	exon2	c.T169C	p.S57P	AGAAAGAGGCGCC	.	40.0	4.0	41.0	0.0	.	22	.	.	Atlas-SNP
ADSL	158	hgsc.bcm.edu	hg19	22	40742563	40742563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ADSL	NM_001123378	exon1	c.A1G	p.M1V	GTTGGGATGGCGG	.	27.0	7.0	9.0	0.0	.	98	.	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	hg19	X	73960186	73960186	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KIAA2022	NM_001008537	exon3	c.T4206C	p.N1402N	TTTCCCATTGCTT	.	76.0	14.0	39.0	0.0	.	262	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765514	66765515	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AR	NM_000044	exon1	c.525_526del	p.175_176del	.	.	78.0	13.0	53.0	0.0	.	249	.	.	Atlas-INDEL
CLCN5	1184	hgsc.bcm.edu	hg19	X	49853423	49853444	+	Frame_Shift_Del	DEL	AATGGAACAGCTGGCTTATTAC	AATGGAACAGCTGGCTTATTAC	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	AATGGAACAGCTGGCTTATTAC	AATGGAACAGCTGGCTTATTAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CLCN5	NM_001127898	exon12	c.1625_1646del	p.542_549del	.	.	91.0	10.0	122.0	0.0	.	137	.	.	Atlas-Indel,Pindel
SHCBP1L	81626	hgsc.bcm.edu	hg19	1	182922155	182922155	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SHCBP1L	NM_030933	exon1	c.115delA	p.T39fs	.	.	63.0	14.0	45.0	0.0	.	64	.	.	Atlas-INDEL
TRIM13	10206	hgsc.bcm.edu	hg19	13	50589220	50589254	+	RNA	DEL	AAAAAAAAAAAATATATATATATATATATATATAT	AAAAAAAAAAAATATATATATATATATATATATAT	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	AAAAAAAAAAAATATATATATATATATATATATAT	AAAAAAAAAAAATATATATATATATATATATATAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	TRIM13	.	.	.	.	.	.	22.0	14.0	17.0	0.0	.	30	.	.	Atlas-INDEL
ITIH2	3698	hgsc.bcm.edu	hg19	10	7765447	7765447	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ITIH2	NM_002216	exon9	c.900delT	p.A300fs	.	.	147.0	14.0	105.0	0.0	.	144	.	.	Pindel
CAMK1D	57118	hgsc.bcm.edu	hg19	10	12391854	12391854	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CAMK1D	NM_153498	exon1	c.36delG	p.W12X	.	.	223.0	26.0	144.0	0.0	.	99	.	.	Pindel