Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RPS6KA1	6195	hgsc.bcm.edu	hg19	1	26881119	26881119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	RPS6KA1	NM_001006665	exon8	c.G673A	p.E225K	GACCACGAGAAGA	.	232.0	75.0	150.0	0.0	.	65	.	.	Atlas-SNP
TMEM79	84283	hgsc.bcm.edu	hg19	1	156255146	156255146	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TMEM79	NM_032323	exon2	c.A129C	p.G43G	CCCGGGAGCTGAG	.	121.0	38.0	92.0	0.0	.	43	.	.	Atlas-SNP
PPP1R12B	4660	hgsc.bcm.edu	hg19	1	202462434	202462434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PPP1R12B	NM_002481	exon15	c.C2134A	p.L712M	AGGAGTCTGGATG	.	394.0	144.0	277.0	0.0	.	100	.	.	Atlas-SNP
SP9	100131390	hgsc.bcm.edu	hg19	2	175200968	175200968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SP9	NM_001145250	exon2	c.G155T	p.R52L	GGAAGCGCTCCTC	.	100.0	4.0	60.0	0.0	.	15	.	.	Atlas-SNP
SCN10A	6336	hgsc.bcm.edu	hg19	3	38791583	38791583	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SCN10A	NM_006514	exon12	c.C1848A	p.I616I	GGTTATGATACTG	.	134.0	38.0	105.0	0.0	.	359	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112111324	112111324	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	APC,colon,carcinoma,0,1	APC	NM_001127511	exon4	c.453-2A>G	.	AAAAATAGGTCAT	.	49.0	21.0	49.0	0.0	.	4158	.	.	Atlas-SNP
ZNF451	26036	hgsc.bcm.edu	hg19	6	57012123	57012123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ZNF451	NM_001031623	exon10	c.G1240A	p.D414N	TCTTCTGACTTGC	.	82.0	7.0	65.0	0.0	.	181	.	.	Atlas-SNP
BET1	10282	hgsc.bcm.edu	hg19	7	93628605	93628605	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	BET1	NM_005868	exon2	c.T21C	p.G7G	TCCTTCACCTGCA	.	46.0	16.0	40.0	0.0	.	12	.	.	Atlas-SNP
ZNF800	168850	hgsc.bcm.edu	hg19	7	127026146	127026146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	ZNF800,NS,carcinoma,0,2	ZNF800	NM_176814	exon3	c.G125C	p.G42A	TGAATACCAGATT	.	41.0	10.0	34.0	0.0	.	78	.	.	Atlas-SNP
PTN	5764	hgsc.bcm.edu	hg19	7	136938301	136938301	+	Silent	SNP	G	G	T	rs149012204	alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PTN	NM_002825	exon3	c.C199A	p.R67R	CCTCCCGTGTGCC	.	82.0	4.0	60.0	0.0	.	38	.	G|1.000;A|0.000	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	hg19	8	38133282	38133282	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	WHSC1L1	NM_023034	exon24	c.T4191A	p.S1397S	CAGTGCAGAGGGA	.	70.0	23.0	45.0	0.0	.	137	.	.	Atlas-SNP
LRRTM3	347731	hgsc.bcm.edu	hg19	10	68686847	68686847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LRRTM3	NM_178011	exon2	c.G173C	p.S58T	CCTCAAGTATATC	.	59.0	21.0	48.0	0.0	.	241	.	.	Atlas-SNP
NRAP	4892	hgsc.bcm.edu	hg19	10	115374663	115374663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	NRAP	NM_001261463	exon28	c.T3121A	p.Y1041N	GTTTATAGCCACC	.	235.0	73.0	146.0	0.0	.	208	.	.	Atlas-SNP
STT3A	3703	hgsc.bcm.edu	hg19	11	125476211	125476211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	STT3A	NM_152713	exon8	c.G631T	p.G211C	TGGGGAGGTTATG	.	99.0	4.0	63.0	0.0	.	52	.	.	Atlas-SNP
WNT1	7471	hgsc.bcm.edu	hg19	12	49374348	49374348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.,1	WNT1	NM_005430	exon3	c.G500T	p.W167L	GGCACTGGGGGGG	.	145.0	52.0	92.0	0.0	.	13	.	.	Atlas-SNP
HOXC6	3223	hgsc.bcm.edu	hg19	12	54423712	54423712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HOXC6	NM_004503	exon2	c.G674T	p.R225L	AAAAGCGGGAAGA	.	84.0	4.0	90.0	0.0	.	30	.	.	Atlas-SNP
SART3	9733	hgsc.bcm.edu	hg19	12	108929239	108929239	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SART3	NM_014706	exon12	c.A1452G	p.R484R	GCACAGTCGAGCC	.	163.0	25.0	99.0	0.0	.	64	.	.	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	hg19	12	123815842	123815842	+	Silent	SNP	C	C	T	rs74679372	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SBNO1	NM_001167856	exon7	c.G990A	p.T330T	TGCTATCGTCCTT	.	104.0	39.0	63.0	0.0	.	138	.	C|0.999;A|0.001	Atlas-SNP
OR4M2	390538	hgsc.bcm.edu	hg19	15	22369299	22369299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	OR4M2	NM_001004719	exon1	c.T724A	p.C242S	TCCACCTGCTATT	.	333.0	69.0	272.0	0.0	.	140	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50794186	50794186	+	Missense_Mutation	SNP	C	C	T	rs369826983		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	MYH14	NM_001145809	exon36	c.C5008T	p.R1670C	AAGCAGCGCACTC	.	270.0	86.0	165.0	0.0	.	261	.	.	Atlas-SNP
SLC19A1	6573	hgsc.bcm.edu	hg19	21	46951887	46951887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SLC19A1	NM_001205206	exon3	c.T365C	p.M122T	AGCTCCATGAGCT	.	55.0	7.0	40.0	0.0	.	53	.	.	Atlas-SNP
LIF	3976	hgsc.bcm.edu	hg19	22	30640773	30640773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LIF	NM_002309	exon2	c.G169A	p.G57S	CACTGCCATTGAG	.	221.0	11.0	157.0	0.0	.	18	.	.	Atlas-SNP
IL6ST	3572	hgsc.bcm.edu	hg19	5	55260044	55260049	+	In_Frame_Del	DEL	GACTTC	GACTTC	-	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	GACTTC	GACTTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	IL6ST	NM_001190981	exon6	c.584_589del	p.195_197del	.	.	125.0	14.0	112.0	0.0	.	75	.	.	Atlas-Indel,Pindel
TUBB2A	7280	hgsc.bcm.edu	hg19	6	3154966	3154966	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TUBB2A	NM_001069	exon4	c.470delA	p.E157fs	.	.	320.0	69.0	222.0	0.0	.	23	.	.	Atlas-INDEL