Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm C1QA 712 hgsc.bcm.edu hg19 1 22965369 22965369 + Missense_Mutation SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . C1QA NM_015991 exon3 c.C207A p.D69E AGGAGACCAGGGG . 63.0 10.0 62.0 0.0 . 31 . . Atlas-SNP RNF11 26994 hgsc.bcm.edu hg19 1 51702468 51702468 + Missense_Mutation SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . RNF11 NM_014372 exon1 c.T40A p.S14T GACATCTCCCTGC . 216.0 44.0 227.0 0.0 . 10 . . Atlas-SNP SPAG17 200162 hgsc.bcm.edu hg19 1 118635840 118635840 + Missense_Mutation SNP A A T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SPAG17 NM_206996 exon8 c.T1112A p.L371H TTAATAAGCTGCA . 173.0 13.0 117.0 0.0 . 263 . . Atlas-SNP NOTCH2NL 388677 hgsc.bcm.edu hg19 1 145273364 145273364 + Missense_Mutation SNP C C G novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . NOTCH2NL NM_203458 exon3 c.C218G p.S73C TTGTGTCTCGACC . 3638.0 161.0 2643.0 0.0 . 100 . . Atlas-SNP TTC24 164118 hgsc.bcm.edu hg19 1 156551507 156551507 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 TTC24,NS,carcinoma,0,1 TTC24 NM_001105669 exon2 c.C351T p.G117G ACACGGCGACCAA . 228.0 30.0 136.0 0.0 . 46 . . Atlas-SNP KIF21B 23046 hgsc.bcm.edu hg19 1 200959773 200959773 + Silent SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . KIF21B NM_017596 exon19 c.G2766T p.R922R AATGATCCGTCGC . 183.0 20.0 95.0 0.0 . 208 . . Atlas-SNP LYST 1130 hgsc.bcm.edu hg19 1 235940366 235940366 + Silent SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . LYST NM_000081 exon17 c.C5457T p.A1819A TACCCTGGCAAAG . 68.0 4.0 52.0 0.0 . 370 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196740508 196740508 + Silent SNP G G T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . DNAH7 NM_018897 exon38 c.C6177A p.P2059P CTCAATGGGAGGT . 201.0 44.0 193.0 0.0 . 512 . . Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230632438 230632438 + Silent SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TRIP12 NM_004238 exon41 c.A5811T p.T1937T GACAATTGTCAAA . 88.0 4.0 71.0 0.0 . 207 . . Atlas-SNP SNED1 25992 hgsc.bcm.edu hg19 2 242004719 242004719 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SNED1 NM_001080437 exon21 c.C2718T p.L906L AGAGCTCTTCCCA . 112.0 13.0 81.0 0.0 . 76 . . Atlas-SNP COL7A1 1294 hgsc.bcm.edu hg19 3 48610139 48610139 + Nonsense_Mutation SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . COL7A1 NM_000094 exon87 c.A6865T p.K2289X CTCCTTTAGGTCC . 152.0 19.0 139.0 0.0 . 320 . . Atlas-SNP KBTBD8 84541 hgsc.bcm.edu hg19 3 67054129 67054129 + Missense_Mutation SNP A A T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . KBTBD8 NM_032505 exon3 c.A738T p.E246D GATGGAAGATACC . 53.0 12.0 65.0 0.0 . 101 . . Atlas-SNP CASR 846 hgsc.bcm.edu hg19 3 122003472 122003472 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 CASR,NS,carcinoma,-1,1 CASR NM_001178065 exon7 c.C2701T p.R901C CTGCGCCGCAGCA . 37.0 2.0 55.0 0.0 . 190 . . Atlas-SNP IGSF10 285313 hgsc.bcm.edu hg19 3 151166486 151166486 + Missense_Mutation SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . IGSF10 NM_178822 exon4 c.G1283T p.W428L ATTAACCAAGAGG . 81.0 13.0 62.0 0.0 . 279 . . Atlas-SNP ZNF732 654254 hgsc.bcm.edu hg19 4 289878 289878 + Missense_Mutation SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ZNF732 NM_001137608 exon1 c.G67T p.A23S GCTGGGCAGGGTC . 178.0 8.0 175.0 0.0 . 117 . . Atlas-SNP ZNF732 654254 hgsc.bcm.edu hg19 4 289881 289881 + Missense_Mutation SNP G G T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ZNF732 NM_001137608 exon1 c.C64A p.P22T GGGCAGGGTCCAG . 170.0 8.0 168.0 0.0 . 117 . . Atlas-SNP ATP10D 57205 hgsc.bcm.edu hg19 4 47517533 47517533 + Missense_Mutation SNP T T C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ATP10D NM_020453 exon3 c.T331C p.W111R CTGAACTGGGTAC . 142.0 18.0 180.0 0.0 . 168 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79238646 79238646 + Missense_Mutation SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . FRAS1 NM_001166133 exon17 c.C1944A p.D648E CTCTGACCATGGA . 93.0 16.0 84.0 0.0 . 779 . . Atlas-SNP SLC6A3 6531 hgsc.bcm.edu hg19 5 1409893 1409893 + Silent SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SLC6A3 NM_001044 exon10 c.C1341T p.L447L CGTGAAGAGCTCA . 198.0 35.0 169.0 0.0 . 102 . . Atlas-SNP PCDHGC5 56097 hgsc.bcm.edu hg19 5 140869878 140869878 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 PCDHGC5_ENST00000252087,NS,carcinoma,0,2 PCDHGC5 NM_018929 exon1 c.C1071T p.N357N GGCCAACCCTGTC . 151.0 37.0 138.0 0.0 . 199 . . Atlas-SNP RIMS2 9699 hgsc.bcm.edu hg19 8 104897822 104897822 + Missense_Mutation SNP G G T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 RIMS2_ENST00000507740,NS,carcinoma,0,5 RIMS2 NM_001100117 exon4 c.G995T p.R332L AGTCACGCTACCG . 94.0 12.0 85.0 0.0 . 1357 . . Atlas-SNP TEK 7010 hgsc.bcm.edu hg19 9 27206595 27206595 + Missense_Mutation SNP G G C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TEK NM_000459 exon15 c.G2380C p.V794L CCAGCTGTGCAGT . 109.0 12.0 101.0 0.0 . 250 . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79983032 79983032 + Missense_Mutation SNP A A C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . VPS13A NM_001018038 exon62 c.A8533C p.I2845L GAAGTCATAAGAC . 44.0 8.0 44.0 0.0 . 735 . . Atlas-SNP MED27 9442 hgsc.bcm.edu hg19 9 134738510 134738510 + Silent SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . MED27 NM_004269 exon7 c.C741T p.T247T GGCAGTGGTGGCA . 180.0 32.0 159.0 0.0 . 37 . . Atlas-SNP RPL7A 6130 hgsc.bcm.edu hg19 9 136216457 136216457 + Missense_Mutation SNP G G A rs11549070 TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . RPL7A NM_000972 exon3 c.G176A p.R59H GGCCCCGCTATAT . 170.0 43.0 112.0 0.0 . 9 . . Atlas-SNP BICC1 80114 hgsc.bcm.edu hg19 10 60573612 60573612 + Missense_Mutation SNP G G C rs111922761 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . BICC1 NM_001080512 exon18 c.G2399C p.R800P TTTCACGGTCCAA . 248.0 45.0 199.0 0.0 . 121 . G|0.992;A|0.008 Atlas-SNP OAT 4942 hgsc.bcm.edu hg19 10 126089485 126089485 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . OAT NM_000274 exon9 c.G1083A p.M361I TAGCTTCATGAGT . 144.0 31.0 118.0 0.0 . 25 . . Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134731941 134731941 + Missense_Mutation SNP C C A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TTC40 NM_001200049 exon16 c.G1942T p.D648Y GCAGGTCGGGGCA . 217.0 50.0 225.0 0.0 . 100 . . Atlas-SNP SYVN1 84447 hgsc.bcm.edu hg19 11 64900425 64900425 + Missense_Mutation SNP A A C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SYVN1 NM_172230 exon4 c.T346G p.F116V AGTGGAAACATTT . 176.0 28.0 154.0 0.0 . 55 . . Atlas-SNP C11orf73 51501 hgsc.bcm.edu hg19 11 86048470 86048470 + Silent SNP A A G rs376891384 TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . C11orf73 NM_016401 exon3 c.A318G p.P106P AACTCCATCTGTT . 155.0 35.0 132.0 0.0 . 9 . . Atlas-SNP TMEM218 219854 hgsc.bcm.edu hg19 11 124971201 124971201 + Splice_Site SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TMEM218 NM_001258242 exon5 c.216-2A>T . AGAACCTGGGGTT . 33.0 9.0 38.0 0.0 . 14 . . Atlas-SNP TMTC1 83857 hgsc.bcm.edu hg19 12 29920979 29920979 + Missense_Mutation SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TMTC1 NM_001193451 exon2 c.C332T p.P111L TAGAATGGGTTCA . 80.0 11.0 77.0 0.0 . 147 . . Atlas-SNP DTX3 196403 hgsc.bcm.edu hg19 12 58001298 58001298 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . DTX3 NM_178502 exon5 c.C652T p.R218W AATGGGCGGATGC . 407.0 63.0 249.0 0.0 . 27 . . Atlas-SNP ANO4 121601 hgsc.bcm.edu hg19 12 101490394 101490394 + Missense_Mutation SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ANO4 NM_178826 exon18 c.T1714A p.S572T AACAGCTCCACAT . 172.0 23.0 127.0 0.0 . 183 . . Atlas-SNP DUOX2 50506 hgsc.bcm.edu hg19 15 45391660 45391660 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . DUOX2 NM_014080 exon26 c.G3436A p.A1146T TGACTGCGTGGCC . 92.0 16.0 81.0 0.0 . 137 . . Atlas-SNP TSC2 7249 hgsc.bcm.edu hg19 16 2134406 2134406 + Nonsense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . TSC2 NM_000548 exon34 c.C4183T p.Q1395X ACTCTGCAGGACA . 60.0 14.0 84.0 0.0 . 364 . . Atlas-SNP SEZ6L2 26470 hgsc.bcm.edu hg19 16 29889651 29889651 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . SEZ6L2 NM_001243332 exon10 c.G1669A p.V557M CGTGCACGCCCCA . 125.0 34.0 120.0 0.0 . 137 . . Atlas-SNP RBL2 5934 hgsc.bcm.edu hg19 16 53524210 53524210 + Missense_Mutation SNP T T C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . RBL2 NM_005611 exon22 c.T3418C p.X1140R TCCCACTGAGGTT . 106.0 23.0 115.0 0.0 . 115 . . Atlas-SNP PPAP2C 8612 hgsc.bcm.edu hg19 19 288111 288111 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . PPAP2C NM_177543 exon2 c.G176A p.C59Y TCCCCGCAGTAAA . 272.0 38.0 245.0 0.0 . 38 . . Atlas-SNP ZBTB7A 51341 hgsc.bcm.edu hg19 19 4055085 4055085 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 ZBTB7A,NS,carcinoma,0,1 ZBTB7A NM_015898 exon2 c.G146A p.R49H ACCGAGCGGTGCG . 9.0 3.0 28.0 0.0 . 35 . . Atlas-SNP OR10H1 26539 hgsc.bcm.edu hg19 19 15917988 15917988 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . OR10H1 NM_013940 exon1 c.G860A p.S287N ATGGGGCTGAGGA . 310.0 54.0 304.0 0.0 . 59 . . Atlas-SNP ZNF529 57711 hgsc.bcm.edu hg19 19 37045633 37045633 + Silent SNP A A G novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ZNF529 NM_001145649 exon5 c.T174C p.S58S CTGAGCAGAATCC . 148.0 35.0 146.0 0.0 . 82 . . Atlas-SNP ZNF780B 163131 hgsc.bcm.edu hg19 19 40540905 40540905 + Missense_Mutation SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ZNF780B NM_001005851 exon5 c.G1861A p.A621T TGAAGGCCTTGCC . 144.0 26.0 134.0 0.0 . 143 . . Atlas-SNP NLRP7 199713 hgsc.bcm.edu hg19 19 55450802 55450802 + Missense_Mutation SNP C C T rs146205567 alternate_allele TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . NLRP7 NM_001127255 exon4 c.G1385A p.G462D TAGCAGCCTTTGG . 220.0 29.0 162.0 0.0 . 411 . C|1.000;A|0.000 Atlas-SNP ZNF446 55663 hgsc.bcm.edu hg19 19 58991841 58991841 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ZNF446 NM_017908 exon7 c.C1101T p.T367T AGCCACCGGGGAA . 92.0 4.0 123.0 0.0 . 22 . . Atlas-SNP LAMA5 3911 hgsc.bcm.edu hg19 20 60887087 60887087 + Missense_Mutation SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . LAMA5 NM_005560 exon70 c.C9524T p.S3175F TGCAGGGACACCT . 57.0 16.0 61.0 0.0 . 268 . . Atlas-SNP SUPT20HL1 100130302 hgsc.bcm.edu hg19 X 24382426 24382426 + Missense_Mutation SNP G G C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . . NM_001136234 exon1 c.G1549C p.A517P GCTGCTGCTCCTG . 241.0 12.0 198.0 0.0 . . . . Atlas-SNP BMP15 9210 hgsc.bcm.edu hg19 X 50658924 50658924 + Missense_Mutation SNP T T A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . BMP15 NM_005448 exon2 c.T496A p.S166T TTCCCTTCCTCAG . 379.0 56.0 315.0 0.0 . 62 . . Atlas-SNP DNASE1L1 1774 hgsc.bcm.edu hg19 X 153633194 153633194 + Missense_Mutation SNP T T C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . DNASE1L1 NM_006730 exon4 c.A286G p.M96V TCTCCATGTAGGT . 293.0 58.0 233.0 0.0 . 20 . . Atlas-SNP MPP1 4354 hgsc.bcm.edu hg19 X 154010040 154010040 + Silent SNP C C T novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . MPP1 NM_002436 exon10 c.G984A p.G328G CTCCTTCCCATCT . 361.0 65.0 254.0 0.0 . 52 . . Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 11825 11825 + Missense_Mutation SNP G G A novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . . ENST00000361381 exon1 c.G1066A p.A356T CTAATAGCTTTTT . 33.0 31.0 11.0 0.0 . . . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13917 13917 + Silent SNP A A G novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . . ENST00000361567 exon1 c.A1581G p.G527G ACTCGGATTCTAC . 31.0 18.0 7.0 0.0 . . . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 14063 14063 + Missense_Mutation SNP T T C novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . . ENST00000361567 exon1 c.T1727C p.I576T CCATCATCACCTC . 36.0 5.0 15.0 0.0 . . . . Atlas-SNP PGS1 9489 hgsc.bcm.edu hg19 17 76395500 76395500 + Frame_Shift_Del DEL T T - novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . PGS1 NM_024419 exon5 c.582delC p.L194fs . . 176.0 46.0 124.0 0.0 . 30 . . Atlas-Indel,Pindel STAT5B 6777 hgsc.bcm.edu hg19 17 40384099 40384100 + Frame_Shift_Ins INS - - G novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . STAT5B NM_012448 exon2 c.47_48insC p.H16fs . . 242.0 48.0 199.0 0.0 . 89 . . Atlas-Indel,Pindel AKT3 10000 hgsc.bcm.edu hg19 1 243800994 243800994 + Frame_Shift_Del DEL C C - novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . AKT3 NM_001206729 exon6 c.481delA p.K161fs . . 59.0 22.0 31.0 0.0 . 177 . . Atlas-Indel,Pindel ADNP 23394 hgsc.bcm.edu hg19 20 49508933 49508934 + Frame_Shift_Del DEL TT TT - novel TCGA-DD-A4NH-01A-11D-A27I-10 TCGA-DD-A4NH-10A-01D-A27I-10 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7d6e688d-9606-497f-93d0-ab5238450020 2aa64a1b-06d8-4074-ad24-b2c108738bd2 . ADNP NM_015339 exon5 c.2318_2319del p.773_773del . . 201.0 43.0 180.0 0.0 . 106 . . Atlas-Indel,Pindel