Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm WASF2 10163 hgsc.bcm.edu hg19 1 27734780 27734780 + Missense_Mutation SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . WASF2 NM_006990 exon9 c.A1400G p.N467S ACGTCATTGCCCA . 88.0 35.0 119.0 0.0 . 41 . . Atlas-SNP BAI2 576 hgsc.bcm.edu hg19 1 32206014 32206014 + Silent SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . BAI2 NM_001703 exon12 c.C1923T p.D641D CAGAATGTCCACA . 65.0 22.0 88.0 0.0 . 128 . . Atlas-SNP NRD1 4898 hgsc.bcm.edu hg19 1 52272522 52272522 + Missense_Mutation SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NRD1 NM_002525 exon20 c.A2258G p.N753S GGAGTATTCACAA . 205.0 80.0 288.0 0.0 . 89 . . Atlas-SNP HRNR 388697 hgsc.bcm.edu hg19 1 152191055 152191055 + Missense_Mutation SNP C C G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . HRNR NM_001009931 exon3 c.G3050C p.G1017A CCGGAACCAGACC . 274.0 23.0 187.0 0.0 . 403 . . Atlas-SNP LCE6A 448835 hgsc.bcm.edu hg19 1 152816050 152816050 + Silent SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . LCE6A NM_001128600 exon2 c.C54T p.S18S ATGCTCCCCTCCC . 211.0 43.0 164.0 0.0 . 10 . . Atlas-SNP GON4L 54856 hgsc.bcm.edu hg19 1 155823310 155823310 + Missense_Mutation SNP T T G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . GON4L NM_001037533 exon2 c.A262C p.N88H GTACATTTGTGTT . 382.0 33.0 190.0 0.0 . 392 . . Atlas-SNP OR6K2 81448 hgsc.bcm.edu hg19 1 158669566 158669566 + Silent SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . OR6K2 NM_001005279 exon1 c.C877T p.L293L TCCTCAGGCTATA . 232.0 157.0 194.0 0.0 . 104 . . Atlas-SNP PBX1 5087 hgsc.bcm.edu hg19 1 164789392 164789392 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . PBX1 NM_001204963 exon7 c.G1081A p.A361T CAAGGGGCCCAGG . 160.0 25.0 153.0 0.0 . 60 . . Atlas-SNP NUP133 55746 hgsc.bcm.edu hg19 1 229636533 229636533 + Silent SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NUP133 NM_018230 exon4 c.T483C p.S161S GGGAGAAGAGTAA . 102.0 22.0 41.0 0.0 . 111 . . Atlas-SNP ASAP2 8853 hgsc.bcm.edu hg19 2 9508603 9508603 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ASAP2 NM_001135191 exon16 c.G1511A p.C504Y AATGTTGCCTACC . 78.0 30.0 86.0 0.0 . 91 . . Atlas-SNP ADAM17 6868 hgsc.bcm.edu hg19 2 9630394 9630394 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ADAM17 NM_003183 exon19 c.C2387T p.T796M TGGTCCGTGAGAT . 133.0 61.0 153.0 0.0 . 61 . . Atlas-SNP CLEC4F 165530 hgsc.bcm.edu hg19 2 71043463 71043463 + Silent SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . CLEC4F NM_173535 exon4 c.C1050T p.G350G CAGACGGCCATTT . 179.0 69.0 213.0 0.0 . 95 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73679731 73679731 + Missense_Mutation SNP A A G rs367904732 TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ALMS1 NM_015120 exon8 c.A6074G p.K2025R AGCCCAAGATTTC . 80.0 33.0 136.0 0.0 . 384 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73679798 73679798 + Nonsense_Mutation SNP T T A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ALMS1 NM_015120 exon8 c.T6141A p.Y2047X TTCCTATTCTCAA . 86.0 35.0 144.0 0.0 . 384 . . Atlas-SNP ANKRD36 375248 hgsc.bcm.edu hg19 2 97869996 97869996 + Missense_Mutation SNP G G T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ANKRD36 NM_001164315 exon50 c.G3057T p.R1019S AACTAGGACAGGT . 58.0 11.0 58.0 0.0 . 170 . . Atlas-SNP SLC4A10 57282 hgsc.bcm.edu hg19 2 162799343 162799343 + Missense_Mutation SNP T T G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . SLC4A10 NM_001178015 exon16 c.T2039G p.L680W GCACATTGAAGGA . 61.0 23.0 34.0 0.0 . 309 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179560596 179560596 + Silent SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . TTN NM_001267550 exon114 c.T31203C p.Y10401Y ACCTTCATAGACC . 338.0 77.0 253.0 0.0 . 18412 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196682482 196682482 + Silent SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . DNAH7 NM_018897 exon50 c.A9363G p.Q3121Q CCTTTCTTGTGCC . 135.0 42.0 84.0 0.0 . 512 . . Atlas-SNP IQCF1 132141 hgsc.bcm.edu hg19 3 51937031 51937031 + Silent SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b IQCF1,NS,carcinoma,0,1 IQCF1 NM_152397 exon2 c.T78C p.H26H GGACAAATGGGTT . 240.0 84.0 296.0 0.0 . 26 . . Atlas-SNP KCNAB1 7881 hgsc.bcm.edu hg19 3 156234115 156234115 + Missense_Mutation SNP G G A rs370046885 TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . KCNAB1 NM_172160 exon11 c.G922A p.G308R AAATACGGAAACG . 72.0 34.0 104.0 0.0 . 176 . . Atlas-SNP SLC26A1 10861 hgsc.bcm.edu hg19 4 982779 982779 + Missense_Mutation SNP T T G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . SLC26A1 NM_022042 exon3 c.A1948C p.S650R GCGGGCTGCAGCA . 45.0 16.0 46.0 0.0 . 44 . . Atlas-SNP EVC2 132884 hgsc.bcm.edu hg19 4 5578055 5578055 + Missense_Mutation SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . EVC2 NM_147127 exon18 c.G3184T p.G1062W CCTCCCCAGGTTC . 55.0 6.0 79.0 0.0 . 202 . . Atlas-SNP NCAPG 64151 hgsc.bcm.edu hg19 4 17841380 17841380 + Missense_Mutation SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NCAPG NM_022346 exon17 c.T2548C p.Y850H CGAGTCTATACAA . 77.0 22.0 131.0 0.0 . 76 . . Atlas-SNP GRXCR1 389207 hgsc.bcm.edu hg19 4 42965098 42965098 + Missense_Mutation SNP G G T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . GRXCR1 NM_001080476 exon2 c.G574T p.V192F CGACGAGTTTCTG . 158.0 34.0 228.0 0.0 . 78 . . Atlas-SNP GRXCR1 389207 hgsc.bcm.edu hg19 4 42965111 42965111 + Missense_Mutation SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . GRXCR1 NM_001080476 exon2 c.C587T p.P196L AAGCTCCTTCCCT . 155.0 33.0 229.0 0.0 . 78 . . Atlas-SNP BMP3 651 hgsc.bcm.edu hg19 4 81967179 81967179 + Missense_Mutation SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . BMP3 NM_001201 exon2 c.A604G p.I202V AAAGATATCACTC . 47.0 23.0 76.0 0.0 . 59 . . Atlas-SNP EMCN 51705 hgsc.bcm.edu hg19 4 101331438 101331438 + Splice_Site SNP C C T rs374744629 TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . EMCN NM_016242 exon12 c.825+1G>A . AACTTACGTAATT . 55.0 26.0 98.0 0.0 . 37 . . Atlas-SNP PRDM5 11107 hgsc.bcm.edu hg19 4 121737607 121737607 + Splice_Site SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . PRDM5 NM_018699 exon8 c.865+1G>T . TCCTCACCAGTGT . 85.0 36.0 116.0 0.0 . 76 . . Atlas-SNP RNF175 285533 hgsc.bcm.edu hg19 4 154649420 154649420 + Missense_Mutation SNP C C T rs370409419 TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b RNF175_ENST00000347063,NS,carcinoma,0,3 RNF175 NM_173662 exon4 c.G340A p.V114I TAATAACGGAGAA . 62.0 31.0 82.0 0.0 . 40 . . Atlas-SNP CDH6 1004 hgsc.bcm.edu hg19 5 31294184 31294184 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . CDH6 NM_004932 exon3 c.G344A p.R115K CCAAGAGGCTGGA . 143.0 12.0 112.0 0.0 . 175 . . Atlas-SNP JMY 133746 hgsc.bcm.edu hg19 5 78610232 78610232 + Missense_Mutation SNP A A C rs376215787 alternate_allele TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . JMY NM_152405 exon9 c.A2217C p.E739D GGGAGAAGGAAGA . 160.0 70.0 131.0 0.0 . 82 . . Atlas-SNP RASA1 5921 hgsc.bcm.edu hg19 5 86685321 86685321 + Missense_Mutation SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . RASA1 NM_002890 exon24 c.A3037G p.S1013G ACGCTCAGTAATG . 115.0 31.0 101.0 0.0 . 213 . . Atlas-SNP GIN1 54826 hgsc.bcm.edu hg19 5 102440400 102440400 + Missense_Mutation SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b GIN1,NS,carcinoma,0,1 GIN1 NM_017676 exon4 c.A484G p.I162V TGATTATAGCATA . 166.0 36.0 151.0 0.0 . 53 . . Atlas-SNP ETF1 2107 hgsc.bcm.edu hg19 5 137844022 137844022 + Missense_Mutation SNP T T A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ETF1 NM_004730 exon11 c.A1286T p.D429V AATTCATCGTCTC . 77.0 14.0 60.0 0.0 . 38 . . Atlas-SNP PCDHA4 56144 hgsc.bcm.edu hg19 5 140187339 140187339 + Silent SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . PCDHA4 NM_031500 exon1 c.A567G p.V189V GCTGGTAAAAGGT . 191.0 49.0 171.0 0.0 . 419 . . Atlas-SNP PCDHGA3 56112 hgsc.bcm.edu hg19 5 140724102 140724102 + Missense_Mutation SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . PCDHGA3 NM_032011 exon1 c.C502A p.Q168K TCCCTGCAGAACT . 149.0 34.0 113.0 0.0 . 246 . . Atlas-SNP CYFIP2 26999 hgsc.bcm.edu hg19 5 156727773 156727773 + Silent SNP C C G rs375762537 alternate_allele TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . CYFIP2 NM_001037332 exon6 c.C438G p.A146A CCATGCCGAGCGC . 133.0 86.0 112.0 0.0 . 354 . . Atlas-SNP TENM2 57451 hgsc.bcm.edu hg19 5 167420042 167420042 + Silent SNP C C G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . . NM_001122679 exon5 c.C1041G p.P347P CACGCCCCCGCCC . 122.0 52.0 128.0 0.0 . . . . Atlas-SNP FOXI1 2299 hgsc.bcm.edu hg19 5 169535372 169535372 + Silent SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . FOXI1 NM_012188 exon2 c.C894A p.P298P CCACCCCTTGGTC . 128.0 29.0 109.0 0.0 . 70 . . Atlas-SNP MSX2 4488 hgsc.bcm.edu hg19 5 174151962 174151962 + Silent SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . MSX2 NM_002449 exon1 c.G300A p.E100E CTTCGAGACCGCC . 35.0 7.0 39.0 0.0 . 24 . . Atlas-SNP HK3 3101 hgsc.bcm.edu hg19 5 176308352 176308352 + Missense_Mutation SNP G G T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . HK3 NM_002115 exon18 c.C2578A p.L860M CTGCCAGCTCTTC . 84.0 21.0 59.0 0.0 . 210 . . Atlas-SNP MB21D1 115004 hgsc.bcm.edu hg19 6 74161257 74161257 + Missense_Mutation SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . MB21D1 NM_138441 exon1 c.G648T p.E216D CACGTGCTCATAG . 56.0 19.0 63.0 0.0 . 33 . . Atlas-SNP SENP6 26054 hgsc.bcm.edu hg19 6 76376480 76376480 + Missense_Mutation SNP A A T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . SENP6 NM_015571 exon10 c.A1047T p.E349D AAGAGAAAGCATA . 44.0 19.0 71.0 0.0 . 189 . . Atlas-SNP SENP6 26054 hgsc.bcm.edu hg19 6 76376481 76376481 + Missense_Mutation SNP A A C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . SENP6 NM_015571 exon10 c.A1048C p.S350R AGAGAAAGCATAT . 45.0 19.0 72.0 0.0 . 189 . . Atlas-SNP INTS1 26173 hgsc.bcm.edu hg19 7 1525069 1525069 + Missense_Mutation SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . INTS1 NM_001080453 exon23 c.G3013T p.D1005Y CCCCGTCCCGCAG . 47.0 33.0 40.0 0.0 . 145 . . Atlas-SNP KLHL7 55975 hgsc.bcm.edu hg19 7 23207527 23207527 + Missense_Mutation SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . KLHL7 NM_001031710 exon9 c.T1250C p.L417P GCATGCTGACCCA . 158.0 32.0 127.0 0.0 . 102 . . Atlas-SNP NPVF 64111 hgsc.bcm.edu hg19 7 25267920 25267920 + Splice_Site SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NPVF NM_022150 exon2 c.138+1G>A . AACTTACCTCAGA . 245.0 63.0 154.0 0.0 . 36 . . Atlas-SNP NACAD 23148 hgsc.bcm.edu hg19 7 45124554 45124554 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NACAD NM_001146334 exon2 c.C1225T p.P409S CATGGGGCTCCCC . 79.0 20.0 62.0 0.0 . 44 . . Atlas-SNP COBL 23242 hgsc.bcm.edu hg19 7 51098538 51098538 + Missense_Mutation SNP G G C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . COBL NM_015198 exon9 c.C1475G p.T492S GCAAGGGTTTTAC . 201.0 54.0 191.0 0.0 . 167 . . Atlas-SNP AUTS2 26053 hgsc.bcm.edu hg19 7 70228060 70228060 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . AUTS2 NM_001127231 exon7 c.G947A p.R316Q AACTCCGAGCTCC . 67.0 11.0 66.0 0.0 . 173 . . Atlas-SNP ADAM22 53616 hgsc.bcm.edu hg19 7 87780308 87780308 + Missense_Mutation SNP A A T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ADAM22 NM_021722 exon19 c.A1579T p.I527F CCTAATATTCATA . 220.0 83.0 314.0 0.0 . 280 . . Atlas-SNP TAS2R38 5726 hgsc.bcm.edu hg19 7 141672569 141672569 + Silent SNP A A T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . TAS2R38 NM_176817 exon1 c.T921A p.A307A CATCACAGCTCTC . 67.0 23.0 98.0 0.0 . 51 . . Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151970850 151970850 + Missense_Mutation SNP G G T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . MLL3 NM_170606 exon7 c.C952A p.Q318K AATCCTGAAAGGT . 334.0 20.0 484.0 0.0 . 1564 . . Atlas-SNP ZHX2 22882 hgsc.bcm.edu hg19 8 123963936 123963936 + Silent SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ZHX2 NM_014943 exon3 c.G186A p.E62E GATAGAGGTGAAA . 82.0 16.0 62.0 0.0 . 106 . . Atlas-SNP FAM122A 116224 hgsc.bcm.edu hg19 9 71395649 71395649 + Missense_Mutation SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . FAM122A NM_138333 exon1 c.C569A p.P190H AGAGCCCCATCAA . 118.0 49.0 155.0 0.0 . 14 . . Atlas-SNP ZFP37 7539 hgsc.bcm.edu hg19 9 115805121 115805121 + Nonsense_Mutation SNP G G A rs373174435 TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ZFP37 NM_003408 exon4 c.C1777T p.R593X GGGATCGCTGATG . 102.0 39.0 126.0 0.0 . 93 . . Atlas-SNP TAF3 83860 hgsc.bcm.edu hg19 10 8006438 8006438 + Missense_Mutation SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . TAF3 NM_031923 exon3 c.A965G p.K322R GTCCCAAGAGCCC . 42.0 18.0 47.0 0.0 . 93 . . Atlas-SNP LYZL1 84569 hgsc.bcm.edu hg19 10 29581509 29581509 + Silent SNP C C T rs141824789 TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b LYZL1,NS,adenocarcinoma,0,1 LYZL1 NM_032517 exon3 c.C339T p.D113D GGATGACGGCAGC . 89.0 5.0 140.0 0.0 . 25 . C|1.000;T|0.000 Atlas-SNP CCAR1 55749 hgsc.bcm.edu hg19 10 70508892 70508892 + Splice_Site SNP G G T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . CCAR1 NM_018237 exon9 c.827-1G>T . TTTAAAGCTGGTT . 48.0 24.0 34.0 0.0 . 118 . . Atlas-SNP CCAR1 55749 hgsc.bcm.edu hg19 10 70508893 70508893 + Missense_Mutation SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . CCAR1 NM_018237 exon9 c.C827T p.A276V TTAAAGCTGGTTT . 49.0 24.0 34.0 0.0 . 118 . . Atlas-SNP DNHD1 144132 hgsc.bcm.edu hg19 11 6579425 6579425 + Missense_Mutation SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . DNHD1 NM_144666 exon25 c.C8900T p.P2967L GTTTCCCTGGCCA . 45.0 16.0 61.0 0.0 . 198 . . Atlas-SNP MYOD1 4654 hgsc.bcm.edu hg19 11 17742472 17742472 + Missense_Mutation SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . MYOD1 NM_002478 exon2 c.C654A p.S218R CCCGAGCGGCGCC . 40.0 24.0 41.0 0.0 . 50 . . Atlas-SNP OR5T3 390154 hgsc.bcm.edu hg19 11 56019970 56019970 + Missense_Mutation SNP T T A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . OR5T3 NM_001004747 exon1 c.T295A p.L99M TCATTCTTGGATG . 155.0 61.0 284.0 0.0 . 98 . . Atlas-SNP SLC29A2 3177 hgsc.bcm.edu hg19 11 66135010 66135010 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . SLC29A2 NM_001532 exon7 c.C658T p.R220C AGTAGCGGGCAAA . 84.0 30.0 97.0 0.0 . 24 . . Atlas-SNP PRKRIR 5612 hgsc.bcm.edu hg19 11 76063257 76063257 + Missense_Mutation SNP T T C rs148924079 TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b PRKRIR,NS,carcinoma,0,1 PRKRIR NM_004705 exon5 c.A937G p.M313V TTATCATAGTGTG . 347.0 129.0 425.0 0.0 . 65 . T|1.000;C|0.000 Atlas-SNP USP35 57558 hgsc.bcm.edu hg19 11 77920573 77920573 + Missense_Mutation SNP C C A rs202205531 alternate_allele TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . USP35 NM_020798 exon10 c.C1672A p.P558T GAGGAGCCCCCGG . 93.0 39.0 96.0 0.0 . 179 . C|0.999;T|0.001 Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105789505 105789505 + Missense_Mutation SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . GRIA4 NM_001077243 exon11 c.A1337G p.Y446C AAGGATACTGTGT . 81.0 32.0 121.0 0.0 . 380 . . Atlas-SNP HSPA8 3312 hgsc.bcm.edu hg19 11 122931847 122931847 + Silent SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . HSPA8 NM_006597 exon2 c.C186T p.N62N GGTGGGGTTCATT . 44.0 6.0 62.0 0.0 . 168 . . Atlas-SNP GLB1L3 112937 hgsc.bcm.edu hg19 11 134158769 134158769 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . GLB1L3 NM_001080407 exon7 c.G714A p.M238I ATACATGCCGTAT . 28.0 11.0 38.0 0.0 . 102 . . Atlas-SNP USP5 8078 hgsc.bcm.edu hg19 12 6973284 6973284 + Silent SNP T T G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . USP5 NM_001098536 exon17 c.T2169G p.P723P CCCCCCTCCTGAG . 21.0 14.0 73.0 0.0 . 124 . . Atlas-SNP ATF7IP 55729 hgsc.bcm.edu hg19 12 14631250 14631250 + Splice_Site SNP G G T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ATF7IP NM_018179 exon12 c.2942-1G>T . CTAACAGACCCCA . 39.0 24.0 100.0 0.0 . 136 . . Atlas-SNP ATF7IP 55729 hgsc.bcm.edu hg19 12 14631251 14631251 + Missense_Mutation SNP A A C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ATF7IP NM_018179 exon12 c.A2942C p.D981A TAACAGACCCCAA . 39.0 24.0 101.0 0.0 . 136 . . Atlas-SNP LRRK2 120892 hgsc.bcm.edu hg19 12 40687370 40687370 + Nonsense_Mutation SNP A A T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . LRRK2 NM_198578 exon21 c.A2713T p.K905X CTTGTGAAAAAGA . 138.0 101.0 118.0 0.0 . 763 . . Atlas-SNP PDZRN4 29951 hgsc.bcm.edu hg19 12 41957413 41957413 + Missense_Mutation SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . PDZRN4 NM_001164595 exon8 c.A1429G p.K477E GAGTGTAAGAGAA . 98.0 66.0 93.0 0.0 . 346 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49416062 49416062 + Splice_Site SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . MLL2 NM_003482 exon53 c.16412+1G>T . CTCTCACCTGGCA . 87.0 18.0 66.0 0.0 . 1173 . . Atlas-SNP RPH3A 22895 hgsc.bcm.edu hg19 12 113304627 113304627 + Missense_Mutation SNP C C G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . RPH3A NM_001143854 exon7 c.C426G p.I142M CAAAATCTGCATT . 60.0 12.0 60.0 0.0 . 98 . . Atlas-SNP STARD13 90627 hgsc.bcm.edu hg19 13 33681023 33681023 + Silent SNP G G C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . STARD13 NM_178006 exon13 c.C3096G p.L1032L CACGGAGAGGGAC . 60.0 15.0 99.0 0.0 . 100 . . Atlas-SNP WDFY2 115825 hgsc.bcm.edu hg19 13 52301872 52301872 + Missense_Mutation SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . WDFY2 NM_052950 exon6 c.C544A p.L182I ACAATCCTCAAAC . 62.0 14.0 64.0 0.0 . 36 . . Atlas-SNP ARHGEF7 8874 hgsc.bcm.edu hg19 13 111927941 111927941 + Silent SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . ARHGEF7 NM_001113511 exon13 c.C1398A p.I466I AGCCATCCGGAAC . 118.0 32.0 117.0 0.0 . 157 . . Atlas-SNP GPHN 10243 hgsc.bcm.edu hg19 14 67346716 67346716 + Silent SNP A A T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . GPHN NM_001024218 exon5 c.A354T p.G118G GATGGGATCACTT . 42.0 29.0 118.0 0.0 . 79 . . Atlas-SNP DMXL2 23312 hgsc.bcm.edu hg19 15 51839582 51839582 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b DMXL2,NS,carcinoma,0,1 DMXL2 NM_001174117 exon7 c.G591A p.W197X AGGATACCACACT . 67.0 14.0 72.0 0.0 . 262 . . Atlas-SNP LACTB 114294 hgsc.bcm.edu hg19 15 63419842 63419842 + Missense_Mutation SNP T T G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . LACTB NM_171846 exon4 c.T906G p.I302M TTCAATTGAATCC . 101.0 42.0 131.0 0.0 . 29 . . Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72338583 72338583 + Silent SNP T T G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . MYO9A NM_006901 exon2 c.A322C p.R108R TCTCTCTCAGAAG . 101.0 47.0 105.0 0.0 . 203 . . Atlas-SNP LMF1 64788 hgsc.bcm.edu hg19 16 904604 904604 + Missense_Mutation SNP G G T rs201312320 alternate_allele TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . LMF1 NM_022773 exon11 c.C1632A p.F544L CGGAGGGAAGTAG . 34.0 16.0 36.0 0.0 . 42 . G|0.998;A|0.002 Atlas-SNP PPL 5493 hgsc.bcm.edu hg19 16 4935181 4935181 + Missense_Mutation SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . PPL NM_002705 exon22 c.T3475C p.W1159R AGGCCCATATCTT . 68.0 25.0 117.0 0.0 . 168 . . Atlas-SNP C16orf89 146556 hgsc.bcm.edu hg19 16 5108602 5108602 + Missense_Mutation SNP G G C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . C16orf89 NM_001098514 exon4 c.C519G p.S173R CTCGCTGCTGTCC . 28.0 9.0 20.0 0.0 . 64 . . Atlas-SNP PALB2 79728 hgsc.bcm.edu hg19 16 23646316 23646316 + Silent SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . PALB2 NM_024675 exon4 c.A1551G p.K517K GGCTGATTTTCTT . 133.0 58.0 153.0 0.0 . 108 . . Atlas-SNP KDM8 79831 hgsc.bcm.edu hg19 16 27225073 27225073 + Splice_Site SNP G G C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . . NM_024773 exon3 c.665+1G>C . GTGGAGGTGGGTG . 48.0 17.0 59.0 0.0 . . . . Atlas-SNP NLRC5 84166 hgsc.bcm.edu hg19 16 57054706 57054706 + Missense_Mutation SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NLRC5 NM_032206 exon2 c.C82A p.L28M GAATGGCTGAACG . 55.0 14.0 73.0 0.0 . 186 . . Atlas-SNP TPPP3 51673 hgsc.bcm.edu hg19 16 67424967 67424967 + Silent SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . TPPP3 NM_016140 exon3 c.G48A p.K16K GGCAAACTTGCGG . 57.0 13.0 68.0 0.0 . 13 . . Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74487222 74487222 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . GLG1 NM_001145667 exon26 c.C3383T p.A1128V CCATCTGCTGGGG . 94.0 39.0 108.0 0.0 . 106 . . Atlas-SNP YWHAE 7531 hgsc.bcm.edu hg19 17 1264424 1264424 + Missense_Mutation SNP G G T rs148760302 alternate_allele TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . YWHAE NM_006761 exon4 c.C540A p.F180L GTAGTAGAATACG . 49.0 35.0 104.0 0.0 . 50 . G|1.000;A|0.000 Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578525 7578525 + Nonsense_Mutation SNP G G T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b TP53_ENST00000545858,NS,adenocarcinoma,0,1 TP53 NM_000546 exon5 c.C405A p.C135X CAGTTGGCAAAAC . 22.0 16.0 38.0 0.0 . 33396 . . Atlas-SNP GGNBP2 79893 hgsc.bcm.edu hg19 17 34935776 34935776 + Missense_Mutation SNP A A T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . GGNBP2 NM_024835 exon8 c.A947T p.K316M GGCAGAAGCTACG . 197.0 39.0 114.0 0.0 . 72 . . Atlas-SNP KRTAP4-2 85291 hgsc.bcm.edu hg19 17 39334360 39334360 + Missense_Mutation SNP G G C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . KRTAP4-2 NM_033062 exon1 c.C57G p.N19K GCAGCAGTTCTCT . 144.0 38.0 112.0 0.0 . 93 . . Atlas-SNP BECN1 8678 hgsc.bcm.edu hg19 17 40962923 40962923 + Missense_Mutation SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . BECN1 NM_003766 exon12 c.T1208C p.I403T TCTTCAATCTTGC . 47.0 32.0 43.0 0.0 . 23 . . Atlas-SNP C17orf112 100506650 hgsc.bcm.edu hg19 17 51063875 51063875 + Missense_Mutation SNP G G T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . . NM_001243552 exon2 c.G119T p.G40V AGCTGGGAAACAT . 250.0 60.0 189.0 0.0 . . . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 7906552 7906552 + Missense_Mutation SNP A A C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . PTPRM NM_001105244 exon4 c.A518C p.D173A CTATCGATGAGGT . 170.0 57.0 202.0 0.0 . 185 . . Atlas-SNP DSEL 92126 hgsc.bcm.edu hg19 18 65178248 65178248 + Missense_Mutation SNP T T A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . DSEL NM_032160 exon2 c.A3628T p.T1210S TCAGAGTCCAGCA . 104.0 36.0 140.0 0.0 . 196 . . Atlas-SNP BRD4 23476 hgsc.bcm.edu hg19 19 15367957 15367957 + Missense_Mutation SNP T T A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . BRD4 NM_058243 exon8 c.A1369T p.M457L CCGGCATCTTGGC . 25.0 8.0 30.0 0.0 . 172 . . Atlas-SNP LGALS4 3960 hgsc.bcm.edu hg19 19 39297124 39297124 + Missense_Mutation SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b LGALS4,colon,carcinoma,0,2 LGALS4 NM_006149 exon4 c.G451A p.G151R GGCCTCCGATGAA . 76.0 8.0 88.0 0.0 . 39 . . Atlas-SNP CEACAM5 1048 hgsc.bcm.edu hg19 19 42224926 42224926 + Missense_Mutation SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . CEACAM5 NM_004363 exon8 c.C1856T p.S619F CGGCCTCTAACCC . 161.0 71.0 189.0 0.0 . 84 . . Atlas-SNP ZNF226 7769 hgsc.bcm.edu hg19 19 44681511 44681511 + Missense_Mutation SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . . NM_001032372 exon6 c.A2096G p.Y699C AACCATATAAATG . 89.0 44.0 114.0 0.0 . . . . Atlas-SNP PLCB1 23236 hgsc.bcm.edu hg19 20 8698371 8698371 + Missense_Mutation SNP G G T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . PLCB1 NM_015192 exon14 c.A1389T p.K463N AATTTTGGTGAAA . 47.0 17.0 71.0 0.0 . 394 . . Atlas-SNP RBM39 9584 hgsc.bcm.edu hg19 20 34312495 34312495 + Silent SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . RBM39 NM_184234 exon8 c.A684G p.S228S TACCTGTGATGCC . 119.0 71.0 94.0 0.0 . 68 . . Atlas-SNP GTSF1L 149699 hgsc.bcm.edu hg19 20 42355239 42355239 + Missense_Mutation SNP C C G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . GTSF1L NM_001008901 exon1 c.G96C p.K32N GGGGTTCTTTCTC . 145.0 37.0 105.0 0.0 . 14 . . Atlas-SNP NFATC2 4773 hgsc.bcm.edu hg19 20 50048694 50048694 + Missense_Mutation SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NFATC2 NM_012340 exon9 c.G2632A p.G878R GGGGTCCGTTTTT . 155.0 11.0 169.0 0.0 . 112 . . Atlas-SNP STX16 8675 hgsc.bcm.edu hg19 20 57251326 57251326 + Silent SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . STX16 NM_001001433 exon9 c.C957T p.L319L TGTCCTCGTTGGC . 202.0 54.0 195.0 0.0 . 36 . . Atlas-SNP HRH3 11255 hgsc.bcm.edu hg19 20 60791849 60791849 + Missense_Mutation SNP G G C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . HRH3 NM_007232 exon3 c.C551G p.P184R CCCTCGGGGATGG . 65.0 16.0 68.0 0.0 . 25 . . Atlas-SNP BRWD1 54014 hgsc.bcm.edu hg19 21 40627715 40627715 + Missense_Mutation SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . BRWD1 NM_018963 exon19 c.A2111G p.N704S CCAATATTTGGAG . 30.0 7.0 85.0 0.0 . 325 . . Atlas-SNP KRTAP10-7 386675 hgsc.bcm.edu hg19 21 46021639 46021639 + Missense_Mutation SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . KRTAP10-7 NM_198689 exon2 c.C1103T p.S368F AGAAGTCCAGCTG . 30.0 12.0 70.0 0.0 . 41 . . Atlas-SNP CABIN1 23523 hgsc.bcm.edu hg19 22 24564464 24564464 + Missense_Mutation SNP A A G novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . CABIN1 NM_001199281 exon33 c.A5732G p.H1911R AGGTCCATCTTGG . 23.0 19.0 96.0 0.0 . 153 . . Atlas-SNP AP1B1 162 hgsc.bcm.edu hg19 22 29724846 29724846 + Silent SNP G G A rs147684584 TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . AP1B1 NM_001127 exon23 c.C2814T p.H938H GTACACGTGCTGG . 35.0 16.0 52.0 0.0 . 72 . G|1.000;A|0.000 Atlas-SNP CELSR1 9620 hgsc.bcm.edu hg19 22 46807621 46807621 + Silent SNP C C T novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . CELSR1 NM_014246 exon6 c.G4647A p.P1549P CCCGGACGGCCCA . 39.0 13.0 57.0 0.0 . 242 . . Atlas-SNP NUDT10 170685 hgsc.bcm.edu hg19 X 51075989 51075989 + Missense_Mutation SNP C C A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NUDT10 NM_153183 exon2 c.C172A p.P58T GAGGAGCCGGGCG . 48.0 37.0 51.0 0.0 . 28 . . Atlas-SNP NXF3 56000 hgsc.bcm.edu hg19 X 102332620 102332620 + Silent SNP G G C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NXF3 NM_022052 exon18 c.C1506G p.T502T ACTCTGGGTCCCT . 38.0 30.0 62.0 0.0 . 81 . . Atlas-SNP IRAK1 3654 hgsc.bcm.edu hg19 X 153278076 153278076 + Missense_Mutation SNP T T C novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . IRAK1 NM_001569 exon13 c.A1984G p.I662V GGTTGATGATAAT . 59.0 16.0 68.0 0.0 . 107 . . Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 11531 11531 + Missense_Mutation SNP G G A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . . ENST00000361381 exon1 c.G772A p.A258T CACATAGCCTACC . 15.0 12.0 111.0 0.0 . . . . Atlas-SNP NPAT 4863 hgsc.bcm.edu hg19 11 108064705 108064714 + Frame_Shift_Del DEL ACTCATTTAA ACTCATTTAA - novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 ACTCATTTAA ACTCATTTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . NPAT NM_002519 exon3 c.188_197del p.63_66del . . 199.0 55.0 272.0 0.0 . 124 . . Atlas-Indel,Pindel OR5T2 219464 hgsc.bcm.edu hg19 11 56000436 56000441 + In_Frame_Del DEL AGAGGT AGAGGT - novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 AGAGGT AGAGGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . OR5T2 NM_001004746 exon1 c.222_227del p.74_76del . . 74.0 19.0 123.0 0.0 . 107 . . Atlas-Indel,Pindel C6 729 hgsc.bcm.edu hg19 5 41181559 41181560 + Frame_Shift_Ins INS - - C rs372345940 TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b .,1 C6 NM_000065 exon7 c.829_830insG p.S277fs . . 213.0 22.0 180.0 0.0 . 197 . . Atlas-INDEL APOB 338 hgsc.bcm.edu hg19 2 21251239 21251240 + Frame_Shift_Ins INS - - A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . APOB NM_000384 exon13 c.1789_1790insT p.I597fs . . 120.0 49.0 157.0 0.0 . 761 . . Atlas-INDEL IMMP1L 196294 hgsc.bcm.edu hg19 11 31482231 31482232 + Frame_Shift_Ins INS - - A novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . IMMP1L NM_144981 exon4 c.136_137insT p.Q46fs . . 286.0 110.0 390.0 0.0 . 16 . . Atlas-INDEL CD109 135228 hgsc.bcm.edu hg19 6 74492373 74492373 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . CD109 NM_001159587 exon18 c.1999delG p.E667fs . . 82.0 30.0 123.0 0.0 . 170 . . Atlas-Indel,Pindel SENP6 26054 hgsc.bcm.edu hg19 6 76376479 76376480 + Frame_Shift_Ins INS - - TT novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . SENP6 NM_015571 exon10 c.1046_1047insTT p.E349fs . . 44.0 18.0 70.0 0.0 . 189 . . Atlas-INDEL SENP6 26054 hgsc.bcm.edu hg19 6 76376480 76376481 + Frame_Shift_Del DEL AA AA - novel TCGA-DD-A3A7-01A-11D-A22F-10 TCGA-DD-A3A7-11A-11D-A22F-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 29b92b51-7ba3-42a9-97d3-6a9b5e43f928 134e6bf3-534e-4a0e-94e0-37c93f47f72b . SENP6 NM_015571 exon10 c.1046_1047del p.349_349del . . 44.0 14.0 71.0 0.0 . 189 . . Pindel