Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CALML6 163688 hgsc.bcm.edu hg19 1 1847882 1847882 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CALML6 NM_138705 exon3 c.A81G p.T27T GCAGACAGAGCGC . 117.0 5.0 134.0 0.0 . 18 . . Atlas-SNP EPHA2 1969 hgsc.bcm.edu hg19 1 16475439 16475439 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EPHA2 NM_004431 exon3 c.T257C p.V86A CGGTACACCCAGT . 121.0 5.0 105.0 0.0 . 102 . . Atlas-SNP SLC9A1 6548 hgsc.bcm.edu hg19 1 27428223 27428223 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC9A1 NM_003047 exon10 c.A2030G p.E677G TTCTGCTCCAGCT . 120.0 6.0 73.0 0.0 . 68 . . Atlas-SNP PHACTR4 65979 hgsc.bcm.edu hg19 1 28818190 28818190 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHACTR4 NM_023923 exon11 c.T1937C p.L646P CTGAACTCCTTGC . 118.0 5.0 109.0 0.0 . 64 . . Atlas-SNP BAI2 576 hgsc.bcm.edu hg19 1 32207725 32207725 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 BAI2,NS,carcinoma,0,1 BAI2 NM_001703 exon8 c.C1346T p.A449V GGGCCCGCCACGC . 139.0 61.0 88.0 0.0 . 128 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34011768 34011768 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 CSMD2,NS,carcinoma,0,2 CSMD2 NM_052896 exon56 c.G8537A p.R2846H CCCAAACGGATGC . 114.0 45.0 106.0 0.0 . 946 . . Atlas-SNP AGO4 192670 hgsc.bcm.edu hg19 1 36291638 36291638 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_017629 exon6 c.T737C p.V246A AGCGTGTCAAATT . 118.0 5.0 93.0 0.0 . . . . Atlas-SNP HEYL 26508 hgsc.bcm.edu hg19 1 40105230 40105230 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HEYL NM_014571 exon1 c.A68G p.E23G TGGCCCTCTTGGC . 80.0 5.0 87.0 0.0 . 27 . . Atlas-SNP INADL 10207 hgsc.bcm.edu hg19 1 62550289 62550289 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . INADL NM_176877 exon33 c.T4346C p.L1449P TTGGTCTCAGCAT . 110.0 5.0 108.0 0.0 . 179 . . Atlas-SNP LEPR 3953 hgsc.bcm.edu hg19 1 66067119 66067119 + Missense_Mutation SNP A A C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LEPR NM_001003680 exon9 c.A1039C p.N347H GGGTCTAATGTTT . 79.0 28.0 66.0 0.0 . 284 . . Atlas-SNP RPE65 6121 hgsc.bcm.edu hg19 1 68896995 68896995 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RPE65 NM_000329 exon12 c.A1308G p.G436G GCCAAGTCCATAC . 93.0 4.0 113.0 0.0 . 87 . . Atlas-SNP IFI44 10561 hgsc.bcm.edu hg19 1 79115893 79115893 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IFI44 NM_006417 exon2 c.A13G p.T5A GTGACAACTCGTT . 141.0 6.0 117.0 0.0 . 55 . . Atlas-SNP GBP5 115362 hgsc.bcm.edu hg19 1 89729600 89729600 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GBP5 NM_052942 exon9 c.G1181T p.C394F CGTTTACAAATGT . 92.0 10.0 68.0 0.0 . 65 . . Atlas-SNP GBP6 163351 hgsc.bcm.edu hg19 1 89847413 89847413 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GBP6 NM_198460 exon7 c.C1032T p.L344L GAAGCTCCCCACA . 221.0 9.0 173.0 0.0 . 87 . . Atlas-SNP HIPK1 204851 hgsc.bcm.edu hg19 1 114500897 114500897 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HIPK1 NM_198268 exon8 c.T1965C p.C655C AGTATGTCCACCT . 122.0 5.0 99.0 0.0 . 195 . . Atlas-SNP SPRR1A 6698 hgsc.bcm.edu hg19 1 152957833 152957833 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 SPRR1A,NS,carcinoma,0,1 SPRR1A NM_001199828 exon2 c.C127A p.P43T TGCCACCCCAAGG . 363.0 0.0 182.0 0.0 . 17 . . Atlas-SNP OR10J5 127385 hgsc.bcm.edu hg19 1 159505581 159505581 + Missense_Mutation SNP A A T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OR10J5 NM_001004469 exon1 c.T217A p.Y73N GTGTGTACACCGT . 202.0 43.0 116.0 0.0 . 68 . . Atlas-SNP UHMK1 127933 hgsc.bcm.edu hg19 1 162473569 162473569 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UHMK1 NM_175866 exon4 c.A779G p.H260R TTGATCACATATT . 100.0 4.0 66.0 0.0 . 65 . . Atlas-SNP SCYL3 57147 hgsc.bcm.edu hg19 1 169839479 169839479 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCYL3 NM_020423 exon6 c.T542C p.L181P TCTGGGAGAGTTG . 122.0 5.0 64.0 0.0 . 116 . . Atlas-SNP SERPINC1 462 hgsc.bcm.edu hg19 1 173876589 173876589 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SERPINC1 NM_000488 exon6 c.A1217G p.E406G CTCACCTCAAGAA . 184.0 11.0 122.0 0.0 . 57 . . Atlas-SNP PAPPA2 60676 hgsc.bcm.edu hg19 1 176708893 176708893 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PAPPA2 NM_020318 exon13 c.T3930C p.S1310S CCACTCTCTTGGT . 124.0 5.0 60.0 0.0 . 665 . . Atlas-SNP TOR1AIP1 26092 hgsc.bcm.edu hg19 1 179887126 179887126 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 TOR1AIP1,leg,malignant_melanoma,0,1 TOR1AIP1 NM_001267578 exon10 c.G1507A p.A503T AACGCGGCCTTCA . 237.0 0.0 150.0 1.0 . 58 . . Atlas-SNP PTPRC 5788 hgsc.bcm.edu hg19 1 198678836 198678836 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTPRC NM_002838 exon11 c.A1054G p.K352E GATAATAAAGAAA . 186.0 129.0 86.0 0.0 . 229 . . Atlas-SNP PPP1R12B 4660 hgsc.bcm.edu hg19 1 202394742 202394742 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PPP1R12B NM_002481 exon4 c.A590G p.Q197R TGTTGCAGGATGC . 164.0 8.0 93.0 0.0 . 100 . . Atlas-SNP DTL 51514 hgsc.bcm.edu hg19 1 212238257 212238257 + Splice_Site SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DTL NM_016448 exon7 c.527-2A>G . TCTTTCAGATGGG . 81.0 4.0 56.0 0.0 . 52 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216592004 216592004 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 USH2A,NS,carcinoma,0,1 USH2A NM_007123 exon3 c.C503G p.T168R TCTACTGTCTTTT . 214.0 0.0 133.0 0.0 . 1168 . . Atlas-SNP SUSD4 55061 hgsc.bcm.edu hg19 1 223402546 223402546 + Silent SNP G G T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SUSD4 NM_017982 exon6 c.C909A p.I303I TGATTTGATGCAG . 234.0 67.0 149.0 0.0 . 82 . . Atlas-SNP ITPKB 3707 hgsc.bcm.edu hg19 1 226923526 226923526 + Missense_Mutation SNP G G A rs149543375 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITPKB NM_002221 exon2 c.C1634T p.P545L AGCTCCGGACTTG . 132.0 46.0 72.0 0.0 . 158 . G|1.000;A|0.000 Atlas-SNP EDARADD 128178 hgsc.bcm.edu hg19 1 236577581 236577581 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EDARADD NM_145861 exon3 c.G142A p.D48N ATTCAAGATACGG . 164.0 55.0 75.0 0.0 . 31 . . Atlas-SNP HEATR1 55127 hgsc.bcm.edu hg19 1 236750749 236750749 + Missense_Mutation SNP A A T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HEATR1 NM_018072 exon14 c.T1668A p.N556K CAGAAGATTTGAA . 265.0 141.0 185.0 0.0 . 197 . . Atlas-SNP TAF1B 9014 hgsc.bcm.edu hg19 2 10045015 10045015 + Nonsense_Mutation SNP A A T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 TAF1B,NS,carcinoma,0,1 TAF1B NM_005680 exon9 c.A835T p.K279X ATCTACAAAAAAA . 45.0 0.0 43.0 0.0 . 62 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21263838 21263838 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . APOB NM_000384 exon4 c.T355C p.S119P CCTCAGAGTTCTT . 139.0 6.0 109.0 0.0 . 761 . . Atlas-SNP HADHA 3030 hgsc.bcm.edu hg19 2 26426951 26426951 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HADHA NM_000182 exon12 c.A1200G p.G400G TTGCTGTCCTCGG . 163.0 7.0 112.0 0.0 . 87 . . Atlas-SNP TRMT61B 55006 hgsc.bcm.edu hg19 2 29087914 29087914 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRMT61B NM_017910 exon2 c.T771C p.S257S TCCACCAGAGCCT . 88.0 4.0 86.0 0.0 . 28 . . Atlas-SNP SLC30A6 55676 hgsc.bcm.edu hg19 2 32417462 32417462 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC30A6 NM_001193513 exon7 c.A462G p.G154G GTTGGGAGCTCTC . 93.0 4.0 95.0 0.0 . 37 . . Atlas-SNP EML4 27436 hgsc.bcm.edu hg19 2 42544610 42544610 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EML4 NM_019063 exon19 c.C2100T p.Y700Y TATTTACCTCTAT . 98.0 4.0 88.0 0.0 . 92 . . Atlas-SNP SRBD1 55133 hgsc.bcm.edu hg19 2 45812867 45812867 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SRBD1 NM_018079 exon5 c.T695C p.I232T CGAATGATGTTGG . 75.0 4.0 58.0 0.0 . 107 . . Atlas-SNP MSH6 2956 hgsc.bcm.edu hg19 2 48027194 48027194 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MSH6 NM_000179 exon4 c.T2072C p.L691P TCTACCTCAAAAA . 95.0 4.0 81.0 0.0 . 341 . . Atlas-SNP PSME4 23198 hgsc.bcm.edu hg19 2 54128608 54128608 + Missense_Mutation SNP G G C rs369867748 alternate_allele TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PSME4 NM_014614 exon28 c.C3164G p.A1055G ACAATCGCTGGCC . 106.0 43.0 93.0 0.0 . 247 . . Atlas-SNP PSME4 23198 hgsc.bcm.edu hg19 2 54133824 54133824 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PSME4 NM_014614 exon26 c.A2854G p.T952A TTAGTGTCCGTAG . 95.0 4.0 91.0 0.0 . 247 . . Atlas-SNP C2orf42 54980 hgsc.bcm.edu hg19 2 70402864 70402864 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C2orf42 NM_017880 exon5 c.G980A p.S327N AGATTACTGCTCA . 117.0 43.0 120.0 0.0 . 30 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73653590 73653590 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ALMS1 NM_015120 exon6 c.A1247G p.Q416R GCCTGCAGGGGAA . 158.0 7.0 131.0 0.0 . 384 . . Atlas-SNP POLR1A 25885 hgsc.bcm.edu hg19 2 86297358 86297358 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . POLR1A NM_015425 exon13 c.T1649C p.L550P CGGTTCAGTAGCA . 186.0 9.0 139.0 0.0 . 137 . . Atlas-SNP ZAP70 7535 hgsc.bcm.edu hg19 2 98351044 98351044 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZAP70 NM_001079 exon9 c.C951T p.S317S TGAGAGCCCCTAC . 99.0 4.0 80.0 0.0 . 77 . . Atlas-SNP RANBP2 5903 hgsc.bcm.edu hg19 2 109392277 109392277 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RANBP2 NM_006267 exon24 c.A8382G p.E2794E ATCTGAAGAACCT . 96.0 4.0 83.0 0.0 . 488 . . Atlas-SNP TMEM87B 84910 hgsc.bcm.edu hg19 2 112839016 112839016 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM87B NM_032824 exon8 c.A759G p.A253A GATTGCAGCTGTT . 117.0 5.0 95.0 0.0 . 52 . . Atlas-SNP LCT 3938 hgsc.bcm.edu hg19 2 136594658 136594658 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LCT NM_002299 exon1 c.T82C p.F28L AAATGAAATTTCT . 94.0 42.0 68.0 0.0 . 309 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141739764 141739764 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRP1B NM_018557 exon18 c.A2852G p.D951G CCACAGTCGTCTT . 120.0 5.0 89.0 0.0 . 1315 . . Atlas-SNP ARL5A 26225 hgsc.bcm.edu hg19 2 152668893 152668893 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARL5A NM_012097 exon4 c.T317C p.L106P TTATAGAGTTCTT . 143.0 6.0 84.0 0.0 . 12 . . Atlas-SNP LY75 4065 hgsc.bcm.edu hg19 2 160661583 160661583 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LY75 NM_002349 exon35 c.A5141G p.E1714G ATAATCTCATCTT . 97.0 4.0 86.0 0.0 . 151 . . Atlas-SNP SCN1A 6323 hgsc.bcm.edu hg19 2 166866301 166866301 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCN1A NM_001165963 exon20 c.A3930G p.G1310G GATGGCTCCAAGT . 96.0 4.0 61.0 0.0 . 641 . . Atlas-SNP ABCB11 8647 hgsc.bcm.edu hg19 2 169874628 169874628 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCB11 NM_003742 exon2 c.A8G p.D3G ACTGAGTCAGACA . 82.0 4.0 50.0 0.0 . 136 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179560924 179560924 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTN NM_001267550 exon114 c.T30875C p.V10292A TTCTGAACCTCTT . 99.0 4.0 67.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179579232 179579232 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTN NM_001267550 exon91 c.A26269G p.T8757A TGGTAGTCTGCAG . 93.0 4.0 98.0 0.0 . 18412 . . Atlas-SNP INPP1 3628 hgsc.bcm.edu hg19 2 191233941 191233941 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . INPP1 NM_002194 exon5 c.A579G p.T193T ACAGACAGGGGTT . 145.0 6.0 107.0 0.0 . 29 . . Atlas-SNP PLCL1 5334 hgsc.bcm.edu hg19 2 198950766 198950766 + Missense_Mutation SNP T T A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLCL1 NM_006226 exon2 c.T2525A p.F842Y CCCTTTTTGTCCA . 205.0 78.0 164.0 0.0 . 358 . . Atlas-SNP C2orf47 79568 hgsc.bcm.edu hg19 2 200824539 200824539 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C2orf47 NM_024520 exon4 c.T585C p.A195A CCTTGCTGCTAAC . 95.0 4.0 71.0 0.0 . 20 . . Atlas-SNP ZDBF2 57683 hgsc.bcm.edu hg19 2 207162017 207162017 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZDBF2 NM_020923 exon4 c.T108C p.R36R TAGACGTCAAATA . 134.0 6.0 116.0 0.0 . 531 . . Atlas-SNP ERBB4 2066 hgsc.bcm.edu hg19 2 212537944 212537944 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ERBB4 NM_001042599 exon14 c.A1661G p.E554G TCACACTCCACAC . 108.0 6.0 80.0 0.0 . 480 . . Atlas-SNP SMARCAL1 50485 hgsc.bcm.edu hg19 2 217329366 217329366 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMARCAL1 NM_014140 exon13 c.C2117T p.A706V GAACAGCTGAAGC . 91.0 4.0 70.0 0.0 . 93 . . Atlas-SNP USP37 57695 hgsc.bcm.edu hg19 2 219353045 219353045 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP37 NM_020935 exon15 c.T1572C p.S524S ATCAAGAGAATCT . 158.0 9.0 119.0 0.0 . 76 . . Atlas-SNP PTPRN 5798 hgsc.bcm.edu hg19 2 220159739 220159739 + Missense_Mutation SNP T T C rs376114976 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTPRN NM_002846 exon19 c.A2633G p.E878G GTGCCCTCTGCCG . 105.0 5.0 117.0 0.0 . 138 . . Atlas-SNP COL4A3 1285 hgsc.bcm.edu hg19 2 228174007 228174007 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL4A3 NM_000091 exon50 c.T4728C p.S1576S GATTTCTCTCTGG . 112.0 5.0 134.0 0.0 . 293 . . Atlas-SNP FBXO36 130888 hgsc.bcm.edu hg19 2 230861591 230861591 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FBXO36 NM_174899 exon3 c.T330C p.D110D TCTGGATCTTGAA . 223.0 10.0 165.0 0.0 . 22 . . Atlas-SNP DIS3L2 129563 hgsc.bcm.edu hg19 2 233113947 233113947 + Splice_Site SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DIS3L2 NM_152383 exon12 c.1318-2A>G . ATTTACAGGTGGT . 125.0 5.0 114.0 0.0 . 77 . . Atlas-SNP UGT1A5 54579 hgsc.bcm.edu hg19 2 234622002 234622002 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UGT1A5 NM_019078 exon1 c.T365C p.L122S TGTCTTTGATCAT . 232.0 89.0 179.0 0.0 . 66 . . Atlas-SNP HDAC4 9759 hgsc.bcm.edu hg19 2 240274391 240274391 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HDAC4 NM_006037 exon2 c.A4G p.S2G GGGAGCTCATTGC . 110.0 5.0 88.0 0.0 . 127 . . Atlas-SNP PPP1R7 5510 hgsc.bcm.edu hg19 2 242089946 242089946 + Silent SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PPP1R7 NM_002712 exon1 c.G36A p.S12S ACAGTCGCAGGAG . 78.0 4.0 93.0 0.0 . 35 . . Atlas-SNP XYLB 9942 hgsc.bcm.edu hg19 3 38417621 38417621 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . XYLB NM_005108 exon13 c.T1018C p.S340P AATGGCTCCCTCA . 128.0 8.0 129.0 0.0 . 50 . . Atlas-SNP CCR5 1234 hgsc.bcm.edu hg19 3 46415316 46415316 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCR5 NM_000579 exon3 c.T923C p.L308P ACTACCTCTTAGT . 96.0 5.0 76.0 0.0 . 128 . . Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47168143 47168143 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SETD2 NM_014159 exon2 c.A82G p.N28D CCTCATTTTCTTC . 35.0 4.0 33.0 0.0 . 721 . . Atlas-SNP MST1 4485 hgsc.bcm.edu hg19 3 49722912 49722912 + Missense_Mutation SNP T T G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MST1 NM_020998 exon12 c.A1415C p.D472A GGGGGGTCCAGGA . 488.0 30.0 304.0 0.0 . 84 . . Atlas-SNP NEK4 6787 hgsc.bcm.edu hg19 3 52775439 52775439 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NEK4 NM_003157 exon13 c.A2081G p.D694G CCGTAATCCCCAT . 91.0 4.0 71.0 0.0 . 51 . . Atlas-SNP RFT1 91869 hgsc.bcm.edu hg19 3 53125923 53125923 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 RFT1,colon,carcinoma,0,1 RFT1 NM_052859 exon13 c.C1622G p.T541R AGTCATGTCATTT . 228.0 0.0 235.0 0.0 . 34 . . Atlas-SNP CCDC66 285331 hgsc.bcm.edu hg19 3 56651451 56651451 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC66 NM_001141947 exon14 c.T2155C p.Y719H GAAAAGTACCCTA . 100.0 4.0 96.0 0.0 . 145 . . Atlas-SNP ZNF717 100131827 hgsc.bcm.edu hg19 3 75786761 75786761 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,4 ZNF717 NM_001128223 exon5 c.G2013A p.G671G GTTTTTCCCCGTG . 16.0 3.0 14.0 0.0 . 160 . . Atlas-SNP EPHA3 2042 hgsc.bcm.edu hg19 3 89521694 89521694 + Missense_Mutation SNP G G C rs150555764 bycluster;alternate_allele TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 EPHA3,NS,carcinoma,-1,1 EPHA3 NM_005233 exon16 c.G2771C p.W924S GTGTCTGGACAGC . 206.0 0.0 144.0 0.0 . 501 . G|1.000;A|0.000 Atlas-SNP PHLDB2 90102 hgsc.bcm.edu hg19 3 111639163 111639163 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHLDB2 NM_001134437 exon6 c.A1979G p.Q660R GAGAACAGAAATC . 108.0 5.0 81.0 0.0 . 449 . . Atlas-SNP GCSAM 257144 hgsc.bcm.edu hg19 3 111842506 111842506 + Silent SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001190259 exon6 c.C339T p.P113P TTTGCAGGGAACA . 271.0 90.0 217.0 0.0 . . . . Atlas-SNP SPICE1 152185 hgsc.bcm.edu hg19 3 113188037 113188037 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPICE1 NM_144718 exon8 c.G660T p.L220F AGTCCACAACTTA . 158.0 55.0 142.0 0.0 . 130 . . Atlas-SNP ATP6V1A 523 hgsc.bcm.edu hg19 3 113514007 113514007 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP6V1A NM_001690 exon10 c.T1182C p.C394C GAAATGTCTTGGA . 90.0 4.0 75.0 0.0 . 71 . . Atlas-SNP GOLGB1 2804 hgsc.bcm.edu hg19 3 121416461 121416461 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GOLGB1 NM_001256486 exon13 c.A2909G p.E970G CTCATCTCATCAT . 57.0 4.0 58.0 0.0 . 319 . . Atlas-SNP ITGB5 3693 hgsc.bcm.edu hg19 3 124578237 124578237 + Silent SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITGB5 NM_002213 exon3 c.C213T p.V71V ATTTTTGACAAGG . 226.0 87.0 165.0 0.0 . 66 . . Atlas-SNP RHO 6010 hgsc.bcm.edu hg19 3 129251109 129251109 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RHO NM_000539 exon3 c.C546T p.G182G CGAGGGCCTGCAG . 203.0 92.0 172.0 0.0 . 57 . . Atlas-SNP PPP2R3A 5523 hgsc.bcm.edu hg19 3 135721003 135721003 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PPP2R3A NM_002718 exon2 c.T663C p.D221D AATAGATAATTTT . 34.0 14.0 34.0 0.0 . 114 . . Atlas-SNP DZIP1L 199221 hgsc.bcm.edu hg19 3 137790628 137790628 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DZIP1L NM_001170538 exon13 c.T1472C p.L491P ACTCTCAGCAGGG . 89.0 4.0 83.0 0.0 . 88 . . Atlas-SNP CEP70 80321 hgsc.bcm.edu hg19 3 138227297 138227297 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CEP70 NM_024491 exon12 c.A1034G p.D345G CTCTGGTCAATTA . 256.0 11.0 191.0 0.0 . 51 . . Atlas-SNP CPA3 1359 hgsc.bcm.edu hg19 3 148599385 148599385 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CPA3 NM_001870 exon7 c.T653C p.F218S CTGTGTTCAATGT . 96.0 4.0 72.0 0.0 . 75 . . Atlas-SNP IGSF10 285313 hgsc.bcm.edu hg19 3 151176327 151176327 + Silent SNP G G T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IGSF10 NM_178822 exon1 c.C171A p.P57P CACATTGGGCGGG . 244.0 17.0 192.0 0.0 . 279 . . Atlas-SNP MME 4311 hgsc.bcm.edu hg19 3 154802867 154802867 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MME NM_007287 exon3 c.A180G p.S60S GTCATCAGACTGC . 196.0 8.0 177.0 0.0 . 133 . . Atlas-SNP KCNAB1 7881 hgsc.bcm.edu hg19 3 155861084 155861084 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KCNAB1 NM_003471 exon1 c.T117C p.P39P TCAGCCTCAGGCG . 169.0 7.0 110.0 0.0 . 176 . . Atlas-SNP LXN 56925 hgsc.bcm.edu hg19 3 158387376 158387376 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LXN NM_020169 exon3 c.T216C p.A72A TACTTCAGCTGTG . 145.0 6.0 122.0 0.0 . 14 . . Atlas-SNP OTOL1 131149 hgsc.bcm.edu hg19 3 161221375 161221375 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OTOL1 NM_001080440 exon4 c.T1079C p.I360T TCCCCATCAAATT . 121.0 5.0 64.0 0.0 . 63 . . Atlas-SNP SI 6476 hgsc.bcm.edu hg19 3 164735840 164735840 + Silent SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SI NM_001041 exon29 c.C3438T p.S1146S TCCATAGGAATTA . 99.0 4.0 76.0 0.0 . 500 . . Atlas-SNP LRRC31 79782 hgsc.bcm.edu hg19 3 169566057 169566057 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRRC31 NM_024727 exon8 c.T1178C p.L393P GCAGAGAGGTGAA . 100.0 5.0 72.0 0.0 . 66 . . Atlas-SNP NAALADL2 254827 hgsc.bcm.edu hg19 3 175181236 175181236 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NAALADL2 NM_207015 exon7 c.A1282G p.T428A TTGAAAACAGTTA . 61.0 4.0 46.0 0.0 . 86 . . Atlas-SNP HRG 3273 hgsc.bcm.edu hg19 3 186390578 186390578 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HRG NM_000412 exon5 c.A561G p.R187R CTAGAGAGGAGGG . 94.0 5.0 84.0 0.0 . 81 . . Atlas-SNP RFC4 5984 hgsc.bcm.edu hg19 3 186507957 186507957 + Nonsense_Mutation SNP T T A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RFC4 NM_181573 exon10 c.A970T p.K324X TAGACTTCTGTTT . 160.0 61.0 148.0 0.0 . 54 . . Atlas-SNP ATP13A5 344905 hgsc.bcm.edu hg19 3 193029641 193029641 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP13A5 NM_198505 exon20 c.A2409G p.Q803Q TATCACTTGGTAT . 98.0 4.0 80.0 0.0 . 171 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195498669 195498669 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MUC4 NM_018406 exon5 c.A13096G p.I4366V AGATGATCTGGCC . 87.0 5.0 77.0 0.0 . 1505 . . Atlas-SNP TNIP2 79155 hgsc.bcm.edu hg19 4 2749657 2749657 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TNIP2 NM_024309 exon2 c.A292G p.T98A GCTCAGTCAGCCT . 95.0 4.0 69.0 0.0 . 28 . . Atlas-SNP EVC2 132884 hgsc.bcm.edu hg19 4 5664909 5664909 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EVC2 NM_147127 exon9 c.A1070G p.D357G GAAAGGTCCTCAT . 87.0 4.0 84.0 0.0 . 202 . . Atlas-SNP SH3TC1 54436 hgsc.bcm.edu hg19 4 8230126 8230126 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SH3TC1 NM_018986 exon12 c.A2705G p.Q902R GGAACCAGGCAGT . 75.0 5.0 86.0 0.0 . 105 . . Atlas-SNP SH3TC1 54436 hgsc.bcm.edu hg19 4 8230236 8230236 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SH3TC1 NM_018986 exon12 c.G2815C p.G939R CCCCTTGGGGAGT . 141.0 6.0 164.0 0.0 . 105 . . Atlas-SNP BOD1L1 259282 hgsc.bcm.edu hg19 4 13582665 13582665 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_148894 exon21 c.A8682G p.K2894K ATCTGTTTTGGAG . 83.0 4.0 78.0 0.0 . . . . Atlas-SNP PI4K2B 55300 hgsc.bcm.edu hg19 4 25254053 25254053 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PI4K2B NM_018323 exon2 c.T379C p.S127P AGAATCTCTCAAG . 113.0 6.0 86.0 0.0 . 42 . . Atlas-SNP N4BP2 55728 hgsc.bcm.edu hg19 4 40121838 40121838 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . N4BP2 NM_018177 exon9 c.A2107G p.I703V GAGCAAATAGAAA . 50.0 4.0 48.0 0.0 . 166 . . Atlas-SNP CWH43 80157 hgsc.bcm.edu hg19 4 49063874 49063874 + Missense_Mutation SNP T T A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CWH43 NM_025087 exon16 c.T2067A p.H689Q CCATCATTTTCAT . 157.0 7.0 92.0 0.0 . 101 . . Atlas-SNP TMPRSS11B 132724 hgsc.bcm.edu hg19 4 69100333 69100333 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMPRSS11B NM_182502 exon5 c.C317T p.A106V CCATTGGCATTAG . 134.0 6.0 112.0 0.0 . 66 . . Atlas-SNP ART3 419 hgsc.bcm.edu hg19 4 77003227 77003227 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ART3 NM_001130017 exon3 c.A320G p.E107G CTCAAGAGCAAAC . 78.0 4.0 52.0 0.0 . 34 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79239975 79239975 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FRAS1 NM_001166133 exon18 c.T1972C p.S658P CACTCCTCCTGCC . 126.0 6.0 97.0 0.0 . 779 . . Atlas-SNP ENOPH1 58478 hgsc.bcm.edu hg19 4 83352029 83352029 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ENOPH1 NM_021204 exon1 c.A47G p.D16G TGTTAGATATCGA . 85.0 4.0 73.0 0.0 . 26 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87556466 87556466 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTPN13 NM_006264 exon2 c.A57G p.E19E GGAGGAAGAAATA . 85.0 38.0 97.0 0.0 . 203 . . Atlas-SNP SLC9B1 150159 hgsc.bcm.edu hg19 4 103911043 103911043 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001100874 exon3 c.A125G p.D42G TCTGTATCTGATA . 92.0 4.0 91.0 0.0 . . . . Atlas-SNP ENPEP 2028 hgsc.bcm.edu hg19 4 111409837 111409837 + Missense_Mutation SNP C C T rs373049379 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 ENPEP,NS,carcinoma,0,2 ENPEP NM_001977 exon2 c.C785T p.A262V CAGTGGCGGTAAG . 32.0 19.0 57.0 0.0 . 149 . . Atlas-SNP CCNA2 890 hgsc.bcm.edu hg19 4 122742218 122742218 + Missense_Mutation SNP A A C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 CCNA2,colon,carcinoma,0,1 CCNA2 NM_001237 exon3 c.T486G p.I162M TAATATAATTGAC . 120.0 0.0 157.0 0.0 . 30 . . Atlas-SNP INTU 27152 hgsc.bcm.edu hg19 4 128635178 128635178 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . INTU NM_015693 exon15 c.T2647C p.F883L GTGTTGTTTGAAT . 65.0 4.0 82.0 0.0 . 92 . . Atlas-SNP CLGN 1047 hgsc.bcm.edu hg19 4 141320135 141320135 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CLGN NM_001130675 exon9 c.A754G p.S252G GGAGGCTTCCTTT . 80.0 4.0 143.0 0.0 . 76 . . Atlas-SNP USP38 84640 hgsc.bcm.edu hg19 4 144109051 144109051 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP38 NM_032557 exon2 c.T755C p.L252P CAGTTCTCATCAG . 87.0 4.0 100.0 0.0 . 92 . . Atlas-SNP GAB1 2549 hgsc.bcm.edu hg19 4 144361320 144361320 + Missense_Mutation SNP G G A rs369383480 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GAB1 NM_207123 exon6 c.G1370A p.R457Q CACCACGACAACA . 159.0 7.0 195.0 0.0 . 80 . . Atlas-SNP PRMT10 90826 hgsc.bcm.edu hg19 4 148559833 148559833 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PRMT10 NM_138364 exon12 c.A2388G p.E796E AATCTCTTCATCA . 86.0 4.0 115.0 0.0 . 68 . . Atlas-SNP LRBA 987 hgsc.bcm.edu hg19 4 151773390 151773390 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRBA NM_006726 exon23 c.G3472A p.E1158K TTCCTTCTTGAAA . 93.0 4.0 112.0 0.0 . 253 . . Atlas-SNP GRIA2 2891 hgsc.bcm.edu hg19 4 158238831 158238831 + Missense_Mutation SNP G G C rs199950609 bycluster;alternate_allele TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 GRIA2_ENST00000264426,NS,carcinoma,0,2 GRIA2 NM_000826 exon5 c.G688C p.V230L AAACATGTTAAAG . 111.0 0.0 121.0 0.0 . 358 . G|0.999;A|0.001 Atlas-SNP NAF1 92345 hgsc.bcm.edu hg19 4 164085383 164085383 + Missense_Mutation SNP C C G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NAF1 NM_138386 exon2 c.G526C p.E176Q GTAATTCATCTTT . 117.0 11.0 128.0 0.0 . 69 . . Atlas-SNP NSUN2 54888 hgsc.bcm.edu hg19 5 6607400 6607400 + Missense_Mutation SNP G G T rs374268482 alternate_allele TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 NSUN2,colon,carcinoma,0,1 NSUN2 NM_017755 exon13 c.C1421A p.P474Q AATGACGGACTTT . 466.0 0.0 386.0 0.0 . 82 . . Atlas-SNP CDH10 1008 hgsc.bcm.edu hg19 5 24488013 24488013 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDH10 NM_006727 exon12 c.A2126G p.D709G CGGACGTCCGTGT . 119.0 7.0 115.0 0.0 . 391 . . Atlas-SNP NADKD1 133686 hgsc.bcm.edu hg19 5 36226660 36226660 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NADKD1 NM_001085411 exon3 c.A395G p.E132G ATTCCCTCATTCC . 69.0 4.0 50.0 0.0 . 47 . . Atlas-SNP NIPBL 25836 hgsc.bcm.edu hg19 5 36975946 36975946 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NIPBL NM_015384 exon9 c.G937A p.D313N CCACCAGATATCT . 93.0 4.0 82.0 0.0 . 513 . . Atlas-SNP DAB2 1601 hgsc.bcm.edu hg19 5 39377005 39377005 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 DAB2,lower_third,carcinoma,0,1 DAB2 NM_001343 exon12 c.T1884C p.P628P CTTGGGAGGGCCA . 143.0 6.0 98.0 0.0 . 124 . . Atlas-SNP SLC38A9 153129 hgsc.bcm.edu hg19 5 54952575 54952575 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC38A9 NM_173514 exon9 c.A725G p.D242G ATAGTGTCTGTGT . 88.0 4.0 87.0 0.0 . 50 . . Atlas-SNP PLK2 10769 hgsc.bcm.edu hg19 5 57753128 57753128 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLK2 NM_006622 exon7 c.G888A p.R296R TGTATACCTTGCT . 56.0 4.0 32.0 0.0 . 71 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71494401 71494401 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAP1B NM_005909 exon5 c.A5219G p.Q1740R CTTCTCAGATCGC . 126.0 6.0 75.0 0.0 . 243 . . Atlas-SNP DMGDH 29958 hgsc.bcm.edu hg19 5 78324266 78324266 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 DMGDH,NS,carcinoma,0,1 DMGDH NM_013391 exon12 c.A2022G p.I674M ATAAGATATCCTA . 66.0 3.0 57.0 0.0 . 88 . . Atlas-SNP RASGRF2 5924 hgsc.bcm.edu hg19 5 80475996 80475996 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RASGRF2 NM_006909 exon18 c.T2689C p.F897L TAAGGCTTTAACA . 89.0 4.0 89.0 0.0 . 165 . . Atlas-SNP ANKRD32 84250 hgsc.bcm.edu hg19 5 94030556 94030556 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKRD32 NM_032290 exon21 c.A2716G p.R906G CAACAGAGGAATG . 97.0 5.0 114.0 0.0 . 117 . . Atlas-SNP ELL2 22936 hgsc.bcm.edu hg19 5 95226880 95226880 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ELL2 NM_012081 exon10 c.A1688G p.E563G ACAGTCTCCATCC . 149.0 7.0 143.0 0.0 . 63 . . Atlas-SNP ERAP1 51752 hgsc.bcm.edu hg19 5 96130756 96130756 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ERAP1 NM_001198541 exon5 c.T908C p.L303P TTGGGTAGGGGAT . 116.0 5.0 77.0 0.0 . 59 . . Atlas-SNP SEMA6A 57556 hgsc.bcm.edu hg19 5 115824677 115824677 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SEMA6A NM_020796 exon8 c.A562G p.T188A AGTCAGTCACTGT . 111.0 5.0 89.0 0.0 . 93 . . Atlas-SNP DMXL1 1657 hgsc.bcm.edu hg19 5 118569090 118569090 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DMXL1 NM_005509 exon38 c.A8331G p.Q2777Q TTCTCAACAAATA . 122.0 6.0 115.0 0.0 . 268 . . Atlas-SNP RAPGEF6 51735 hgsc.bcm.edu hg19 5 130769319 130769319 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAPGEF6 NM_001164387 exon27 c.A3817G p.N1273D ACAAGTTGTCAGA . 92.0 4.0 79.0 0.0 . 361 . . Atlas-SNP SEPT8 23176 hgsc.bcm.edu hg19 5 132096620 132096620 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SEPT8 NM_015146 exon9 c.A1160G p.K387R CGGCGCTTTTCCT . 78.0 4.0 73.0 0.0 . 28 . . Atlas-SNP SPINK6 404203 hgsc.bcm.edu hg19 5 147593498 147593498 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPINK6 NM_205841 exon3 c.C107A p.P36H AGGACCCCAAGGT . 153.0 7.0 145.0 0.0 . 8 . . Atlas-SNP SLC6A7 6534 hgsc.bcm.edu hg19 5 149583547 149583547 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC6A7 NM_014228 exon10 c.C1278A p.F426L GGTGTTCTCAGGG . 236.0 73.0 205.0 0.0 . 52 . . Atlas-SNP CD74 972 hgsc.bcm.edu hg19 5 149792276 149792276 + Nonsense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CD74 NM_001025159 exon1 c.C37T p.Q13X GCTTCTGATCTTC . 122.0 5.0 105.0 0.0 . 35 . . Atlas-SNP HMMR 3161 hgsc.bcm.edu hg19 5 162891750 162891750 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HMMR NM_012485 exon3 c.T167C p.V56A TTAATGTTGACAA . 73.0 4.0 65.0 0.0 . 64 . . Atlas-SNP STC2 8614 hgsc.bcm.edu hg19 5 172744893 172744893 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . STC2 NM_003714 exon4 c.A866G p.E289G TCCCACTCGCTGC . 81.0 4.0 80.0 0.0 . 59 . . Atlas-SNP PDLIM7 9260 hgsc.bcm.edu hg19 5 176910650 176910650 + Missense_Mutation SNP C C G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PDLIM7 NM_005451 exon13 c.G1369C p.V457L CTCACACATGAGA . 277.0 106.0 206.0 0.0 . 32 . . Atlas-SNP GFPT2 9945 hgsc.bcm.edu hg19 5 179762947 179762947 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GFPT2 NM_005110 exon4 c.A221G p.D74G ATGCTGTCTTGTT . 174.0 7.0 131.0 0.0 . 74 . . Atlas-SNP EXOC2 55770 hgsc.bcm.edu hg19 6 556010 556010 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EXOC2 NM_018303 exon19 c.T1936C p.F646L GTTGGAAGACCTG . 115.0 5.0 94.0 0.0 . 81 . . Atlas-SNP PHACTR1 221692 hgsc.bcm.edu hg19 6 13206215 13206215 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHACTR1 NM_030948 exon8 c.T833C p.V278A ACACTGTCCTGCC . 126.0 6.0 99.0 0.0 . 94 . . Atlas-SNP DDR1 780 hgsc.bcm.edu hg19 6 30865154 30865154 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DDR1 NM_013994 exon14 c.A2014G p.R672G TTCTCCAGGAATG . 79.0 4.0 57.0 0.0 . 213 . . Atlas-SNP SKIV2L 6499 hgsc.bcm.edu hg19 6 31929439 31929439 + Missense_Mutation SNP A A T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SKIV2L NM_006929 exon9 c.A905T p.Q302L TTCCCCAGCCAGC . 117.0 36.0 58.0 0.0 . 97 . . Atlas-SNP BTNL2 56244 hgsc.bcm.edu hg19 6 32370747 32370747 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BTNL2 NM_019602 exon3 c.T674C p.L225P TCAGTGAGGACGG . 193.0 8.0 173.0 0.0 . 50 . . Atlas-SNP RNF8 9025 hgsc.bcm.edu hg19 6 37344709 37344709 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RNF8 NM_003958 exon6 c.A1136G p.K379R AAGAGAAGGAGAA . 90.0 5.0 63.0 0.0 . 78 . . Atlas-SNP MDGA1 266727 hgsc.bcm.edu hg19 6 37631783 37631783 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MDGA1 NM_153487 exon2 c.T167C p.L56P AGCATGAGGGTGT . 175.0 7.0 148.0 0.0 . 104 . . Atlas-SNP TRERF1 55809 hgsc.bcm.edu hg19 6 42232472 42232472 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRERF1 NM_033502 exon7 c.G1605A p.G535G CATTCCCCCGTGG . 121.0 5.0 98.0 0.0 . 124 . . Atlas-SNP ABCC10 89845 hgsc.bcm.edu hg19 6 43413441 43413441 + Silent SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCC10 NM_001198934 exon15 c.C3135A p.I1045I CAACATCCTCCTG . 251.0 102.0 258.0 0.0 . 118 . . Atlas-SNP TJAP1 93643 hgsc.bcm.edu hg19 6 43473140 43473140 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TJAP1 NM_001146016 exon11 c.A1221G p.E407E CTCTGAAGAGGAC . 79.0 4.0 55.0 0.0 . 35 . . Atlas-SNP ANKRD66 100287718 hgsc.bcm.edu hg19 6 46726514 46726514 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001162435 exon5 c.T612C p.P204P GCTGCCTCTGGAT . 101.0 6.0 41.0 0.0 . . . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 66204564 66204564 + Missense_Mutation SNP G G A rs367977860 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EYS NM_001142801 exon4 c.C740T p.P247L GTAAATGGTGGGT . 73.0 4.0 62.0 0.0 . 527 . . Atlas-SNP DDX43 55510 hgsc.bcm.edu hg19 6 74125911 74125911 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DDX43 NM_018665 exon16 c.A1909G p.M637V AGAAAAATGGAAA . 71.0 4.0 57.0 0.0 . 69 . . Atlas-SNP TTK 7272 hgsc.bcm.edu hg19 6 80721476 80721476 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTK NM_003318 exon7 c.A759G p.I253M AGAAATAGGTTAC . 125.0 5.0 104.0 0.0 . 199 . . Atlas-SNP NDUFAF4 29078 hgsc.bcm.edu hg19 6 97338980 97338980 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NDUFAF4 NM_014165 exon3 c.A528G p.X176W TTTTCTTCATTTT . 87.0 4.0 47.0 0.0 . 16 . . Atlas-SNP PRDM1 639 hgsc.bcm.edu hg19 6 106536122 106536122 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PRDM1 NM_001198 exon2 c.C89T p.A30V GATTGGCAGAGGG . 172.0 59.0 130.0 0.0 . 195 . . Atlas-SNP PRDM1 639 hgsc.bcm.edu hg19 6 106553019 106553019 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PRDM1 NM_001198 exon5 c.C984T p.P328P CTCCCCCATTCCA . 44.0 18.0 26.0 0.0 . 195 . . Atlas-SNP C6orf203 51250 hgsc.bcm.edu hg19 6 107372314 107372314 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C6orf203 NM_001142470 exon5 c.A612G p.G204G AGCAGGAACAGAG . 93.0 4.0 64.0 0.0 . 26 . . Atlas-SNP OSTM1 28962 hgsc.bcm.edu hg19 6 108370618 108370618 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OSTM1 NM_014028 exon5 c.A788G p.N263S GTGATGTTCATCT . 100.0 4.0 82.0 0.0 . 22 . . Atlas-SNP MICAL1 64780 hgsc.bcm.edu hg19 6 109773524 109773524 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MICAL1 NM_001159291 exon6 c.A757G p.T253A CCTGTGTCTCCTC . 128.0 6.0 80.0 0.0 . 79 . . Atlas-SNP MED23 9439 hgsc.bcm.edu hg19 6 131931307 131931307 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MED23 NM_015979 exon12 c.A974G p.E325G AACTTCTCCTCGG . 78.0 4.0 44.0 0.0 . 112 . . Atlas-SNP HBS1L 10767 hgsc.bcm.edu hg19 6 135358603 135358603 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HBS1L NM_001145207 exon5 c.A992G p.E331G ATATTTTCCAACG . 137.0 6.0 106.0 0.0 . 75 . . Atlas-SNP MYB 4602 hgsc.bcm.edu hg19 6 135507076 135507076 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYB NM_001161660 exon2 c.A59G p.E20G ACTTTGAGATGTG . 90.0 4.0 80.0 0.0 . 137 . . Atlas-SNP MAP3K5 4217 hgsc.bcm.edu hg19 6 136935403 136935403 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAP3K5 NM_005923 exon16 c.A2172G p.E724E TATTTCTTCATGC . 76.0 4.0 57.0 0.0 . 136 . . Atlas-SNP ECT2L 345930 hgsc.bcm.edu hg19 6 139197610 139197610 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ECT2L NM_001195037 exon13 c.A1580G p.E527G TTCAGGAAAGAAA . 72.0 4.0 64.0 0.0 . 75 . . Atlas-SNP ADGB 79747 hgsc.bcm.edu hg19 6 147049711 147049711 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADGB NM_024694 exon20 c.A2354G p.E785G CACAGGAGAGCTG . 94.0 5.0 88.0 0.0 . 93 . . Atlas-SNP STXBP5 134957 hgsc.bcm.edu hg19 6 147631274 147631274 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . STXBP5 NM_139244 exon10 c.A972G p.R324R AAGAAGACCTTGC . 70.0 4.0 81.0 0.0 . 163 . . Atlas-SNP LATS1 9113 hgsc.bcm.edu hg19 6 149997708 149997708 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LATS1 NM_004690 exon6 c.A2759G p.E920G AACACTTCAGGTG . 81.0 4.0 63.0 0.0 . 241 . . Atlas-SNP GPR31 2853 hgsc.bcm.edu hg19 6 167571153 167571153 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPR31 NM_005299 exon1 c.T167C p.L56P AGGGCCAGGTTGA . 151.0 7.0 196.0 0.0 . 44 . . Atlas-SNP FOXK1 221937 hgsc.bcm.edu hg19 7 4798978 4798978 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FOXK1 NM_001037165 exon7 c.T1448C p.V483A TGGCCGTGCCTCC . 30.0 4.0 68.0 0.0 . 64 . . Atlas-SNP RBAK 57786 hgsc.bcm.edu hg19 7 5104405 5104405 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 RBAK_ENST00000396912,NS,malignant_melanoma,0,2 RBAK NM_001204456 exon6 c.C1318T p.R440W TTTTCTCGGGTGT . 72.0 3.0 61.0 0.0 . 82 . . Atlas-SNP COL28A1 340267 hgsc.bcm.edu hg19 7 7555463 7555463 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL28A1 NM_001037763 exon8 c.T864C p.P288P GTACCCAGGAATT . 94.0 4.0 84.0 0.0 . 113 . . Atlas-SNP OSBPL3 26031 hgsc.bcm.edu hg19 7 24911688 24911688 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OSBPL3 NM_145321 exon3 c.G97A p.D33N AGCTGTCCTGTTC . 114.0 46.0 90.0 0.0 . 100 . . Atlas-SNP SKAP2 8935 hgsc.bcm.edu hg19 7 26765146 26765146 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SKAP2 NM_003930 exon9 c.A697G p.R233G CTCCTCTCTCATC . 91.0 4.0 68.0 0.0 . 40 . . Atlas-SNP ANLN 54443 hgsc.bcm.edu hg19 7 36445866 36445866 + Silent SNP T T G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANLN NM_018685 exon4 c.T564G p.L188L TCTGCTTTCAAAT . 133.0 44.0 117.0 0.0 . 101 . . Atlas-SNP GLI3 2737 hgsc.bcm.edu hg19 7 42012094 42012094 + Silent SNP G G T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GLI3 NM_000168 exon13 c.C1945A p.R649R GCGGCCGAGGATG . 190.0 79.0 129.0 0.0 . 312 . . Atlas-SNP YKT6 10652 hgsc.bcm.edu hg19 7 44247796 44247796 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . YKT6 NM_006555 exon5 c.T458C p.L153P TCATTCTGGTAAG . 92.0 4.0 61.0 0.0 . 12 . . Atlas-SNP SUMF2 25870 hgsc.bcm.edu hg19 7 56136261 56136261 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 SUMF2_ENST00000342190,NS,carcinoma,0,4 SUMF2 NM_015411 exon2 c.G211A p.G71R GGTGACGGGCCTG . 128.0 0.0 96.0 0.0 . 56 . . Atlas-SNP ZNF92 168374 hgsc.bcm.edu hg19 7 64863524 64863524 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF92 NM_152626 exon4 c.G497A p.R166K AGATAAGACATAC . 91.0 4.0 37.0 0.0 . 68 . . Atlas-SNP CACNA2D1 781 hgsc.bcm.edu hg19 7 81662161 81662161 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CACNA2D1 NM_000722 exon12 c.A1095G p.G365G CTCTTCTCCTCCA . 91.0 5.0 37.0 0.0 . 191 . . Atlas-SNP CROT 54677 hgsc.bcm.edu hg19 7 86988625 86988625 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CROT NM_001143935 exon5 c.A303G p.R101R TGAAAGAGCAAAA . 141.0 6.0 68.0 0.0 . 81 . . Atlas-SNP CASD1 64921 hgsc.bcm.edu hg19 7 94166946 94166946 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CASD1 NM_022900 exon9 c.A1006G p.N336D CATCGTAATGCTC . 228.0 47.0 104.0 0.0 . 70 . . Atlas-SNP PEG10 23089 hgsc.bcm.edu hg19 7 94293774 94293774 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PEG10 NM_001172438 exon2 c.T1134C p.G378G AGGAGGTCACTAC . 180.0 9.0 96.0 0.0 . 36 . . Atlas-SNP TMEM130 222865 hgsc.bcm.edu hg19 7 98452869 98452869 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM130 NM_152913 exon5 c.T797C p.L266P CTCCCCAGGAAGT . 167.0 7.0 89.0 0.0 . 54 . . Atlas-SNP TRRAP 8295 hgsc.bcm.edu hg19 7 98574152 98574152 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRRAP NM_001244580 exon54 c.A7985G p.Q2662R GTCACCAGGTGCA . 84.0 4.0 19.0 0.0 . 863 . . Atlas-SNP NRCAM 4897 hgsc.bcm.edu hg19 7 107866100 107866100 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NRCAM NM_001037132 exon7 c.A767G p.E256G TAAAACTCAGTGT . 84.0 4.0 60.0 0.0 . 267 . . Atlas-SNP C7orf66 154907 hgsc.bcm.edu hg19 7 108524086 108524086 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C7orf66 NM_001024607 exon2 c.T326C p.F109S TTTGGAAAAGATT . 89.0 4.0 88.0 0.0 . 29 . . Atlas-SNP LRRN3 54674 hgsc.bcm.edu hg19 7 110764583 110764583 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRRN3 NM_018334 exon2 c.A1755G p.P585P GAATCCATCAACT . 65.0 4.0 73.0 0.0 . 132 . . Atlas-SNP ST7 7982 hgsc.bcm.edu hg19 7 116771958 116771958 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ST7 NM_018412 exon6 c.A585G p.R195R CTGGAGAGAGAGA . 61.0 5.0 45.0 0.0 . 64 . . Atlas-SNP ZNF800 168850 hgsc.bcm.edu hg19 7 127026148 127026148 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF800 NM_176814 exon3 c.T123C p.S41S AATACCAGATTTG . 91.0 4.0 83.0 0.0 . 78 . . Atlas-SNP SVOPL 136306 hgsc.bcm.edu hg19 7 138312173 138312173 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SVOPL NM_001139456 exon11 c.T1103C p.L368P CTTCCCAGGAAAT . 90.0 4.0 59.0 0.0 . 111 . . Atlas-SNP EPHA1 2041 hgsc.bcm.edu hg19 7 143088824 143088824 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 EPHA1_ENST00000275815,NS,carcinoma,0,2 EPHA1 NM_005232 exon17 c.C2741G p.P914R CGATATGGGATCC . 131.0 0.0 64.0 0.0 . 193 . . Atlas-SNP C8orf42 157695 hgsc.bcm.edu hg19 8 442414 442414 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 C8orf42,caecum,carcinoma,0,1 C8orf42 NM_175075 exon4 c.G543A p.P181P CTCCTCCGGGCTA . 49.0 2.0 60.0 0.0 . 23 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 2820095 2820095 + Missense_Mutation SNP T T A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CSMD1 NM_033225 exon61 c.A9521T p.K3174M TCGGACTTATAGG . 71.0 42.0 91.0 0.0 . 1469 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3216715 3216715 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 CSMD1_ENST00000537824,right_lower_lobe,carcinoma,-1,1 CSMD1 NM_033225 exon21 c.G3263A p.G1088E CGGCCCCCACCCA . 74.0 3.0 90.0 1.0 . 1469 . . Atlas-SNP ANGPT2 285 hgsc.bcm.edu hg19 8 6389963 6389963 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANGPT2 NM_001118887 exon2 c.A334G p.I112V GCTGTATCTCTAC . 121.0 5.0 203.0 0.0 . 126 . . Atlas-SNP ERI1 90459 hgsc.bcm.edu hg19 8 8875834 8875834 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ERI1 NM_153332 exon5 c.C610T p.P204S ACCTTCCCTCAGG . 66.0 4.0 114.0 0.0 . 20 . . Atlas-SNP MTMR7 9108 hgsc.bcm.edu hg19 8 17159699 17159699 + Silent SNP A A G rs373353287 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MTMR7 NM_004686 exon13 c.T1584C p.T528T CTGCTGAGTTTCT . 86.0 4.0 130.0 0.0 . 75 . . Atlas-SNP INTS10 55174 hgsc.bcm.edu hg19 8 19694579 19694579 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . INTS10 NM_018142 exon13 c.T1547C p.V516A AAAAAGTCCTTGA . 96.0 4.0 153.0 0.0 . 46 . . Atlas-SNP SLC39A14 23516 hgsc.bcm.edu hg19 8 22273673 22273673 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC39A14 NM_001135153 exon7 c.A1027G p.S343G ACTCTGAGCGACG . 143.0 6.0 174.0 0.0 . 59 . . Atlas-SNP ESCO2 157570 hgsc.bcm.edu hg19 8 27634369 27634369 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ESCO2 NM_001017420 exon3 c.T544C p.C182R AATAATTGTCATT . 54.0 4.0 50.0 0.0 . 50 . . Atlas-SNP PROSC 11212 hgsc.bcm.edu hg19 8 37633463 37633463 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PROSC NM_007198 exon7 c.T625C p.C209R GAGCTGTGTAAAA . 84.0 4.0 51.0 0.0 . 20 . . Atlas-SNP WHSC1L1 54904 hgsc.bcm.edu hg19 8 38205330 38205330 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WHSC1L1 NM_017778 exon2 c.A360G p.R120R ATGTGGTCTTGTG . 75.0 4.0 76.0 0.0 . 137 . . Atlas-SNP IKBKB 3551 hgsc.bcm.edu hg19 8 42176819 42176819 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IKBKB NM_001556 exon14 c.T1396C p.S466P TGCCTCTCCAAAA . 87.0 4.0 72.0 0.0 . 88 . . Atlas-SNP NSMAF 8439 hgsc.bcm.edu hg19 8 59522272 59522272 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NSMAF NM_001144772 exon10 c.A671G p.K224R TGCAGCTTTTCAG . 85.0 4.0 62.0 0.0 . 156 . . Atlas-SNP KCNB2 9312 hgsc.bcm.edu hg19 8 73480531 73480531 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KCNB2 NM_004770 exon2 c.T562C p.S188P CCTAACTCATCAG . 74.0 5.0 48.0 0.0 . 228 . . Atlas-SNP CRISPLD1 83690 hgsc.bcm.edu hg19 8 75932282 75932282 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CRISPLD1 NM_031461 exon12 c.T1212C p.C404C GCTCTGTCCATTT . 248.0 11.0 157.0 0.0 . 94 . . Atlas-SNP RALYL 138046 hgsc.bcm.edu hg19 8 85097244 85097244 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RALYL NM_001100391 exon1 c.G11C p.R4P GTAAACGACGCAG . 174.0 7.0 160.0 0.0 . 123 . . Atlas-SNP WWP1 11059 hgsc.bcm.edu hg19 8 87410810 87410810 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WWP1 NM_007013 exon7 c.A482G p.Q161R AAATACAGGAAAA . 146.0 6.0 132.0 0.0 . 97 . . Atlas-SNP STK3 6788 hgsc.bcm.edu hg19 8 99608284 99608284 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . STK3 NM_001256312 exon9 c.A882G p.R294R AGTAGCTCTCTGC . 247.0 10.0 182.0 0.0 . 47 . . Atlas-SNP STK3 6788 hgsc.bcm.edu hg19 8 99718796 99718796 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 STK3,NS,carcinoma,0,2 STK3 NM_001256312 exon8 c.G667A p.E223K CTATTTCTTGAAT . 110.0 5.0 80.0 0.0 . 47 . . Atlas-SNP TNFRSF11B 4982 hgsc.bcm.edu hg19 8 119945174 119945174 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TNFRSF11B NM_002546 exon2 c.A396G p.Q132Q ACCAGCTTGCACC . 90.0 4.0 78.0 0.0 . 87 . . Atlas-SNP MTSS1 9788 hgsc.bcm.edu hg19 8 125569986 125569986 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MTSS1 NM_014751 exon11 c.A1166G p.D389G GCGTAGTCTGGAA . 142.0 7.0 120.0 0.0 . 79 . . Atlas-SNP KIAA0196 9897 hgsc.bcm.edu hg19 8 126052109 126052109 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIAA0196 NM_014846 exon24 c.T2882C p.I961T TTGGCAATCTGTT . 81.0 4.0 63.0 0.0 . 90 . . Atlas-SNP PTK2 5747 hgsc.bcm.edu hg19 8 141675017 141675017 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTK2 NM_005607 exon31 c.A3011G p.E1004G CCTACCTCTCGGT . 123.0 6.0 89.0 0.0 . 311 . . Atlas-SNP MROH6 642475 hgsc.bcm.edu hg19 8 144654667 144654667 + Missense_Mutation SNP G G A rs368816807 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001100878 exon1 c.C218T p.A73V ACGGTGGCCCCAC . 93.0 16.0 62.0 0.0 . . . . Atlas-SNP ERMP1 79956 hgsc.bcm.edu hg19 9 5805053 5805053 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ERMP1 NM_024896 exon10 c.T1888C p.C630R TTGTACAGCCAGC . 77.0 4.0 105.0 0.0 . 63 . . Atlas-SNP MPDZ 8777 hgsc.bcm.edu hg19 9 13168371 13168371 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MPDZ NM_003829 exon22 c.A3248G p.D1083G TTTATGTCAGGGC . 84.0 5.0 95.0 0.0 . 324 . . Atlas-SNP FREM1 158326 hgsc.bcm.edu hg19 9 14737508 14737508 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FREM1 NM_144966 exon38 c.T6426C p.S2142S GCGTTGAGAGGGC . 93.0 4.0 133.0 0.0 . 261 . . Atlas-SNP PLIN2 123 hgsc.bcm.edu hg19 9 19123604 19123604 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLIN2 NM_001122 exon4 c.A268G p.I90V CCTCAATCCTGTC . 96.0 4.0 130.0 0.0 . 41 . . Atlas-SNP IFNA2 3440 hgsc.bcm.edu hg19 9 21385289 21385289 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IFNA2 NM_000605 exon1 c.C40T p.L14F AGCTGAGCACCAG . 118.0 67.0 133.0 0.0 . 32 . . Atlas-SNP TEK 7010 hgsc.bcm.edu hg19 9 27169566 27169566 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TEK NM_000459 exon4 c.C567T p.Y189Y AGTGTACTCGGCC . 77.0 4.0 94.0 0.0 . 250 . . Atlas-SNP DNAJA1 3301 hgsc.bcm.edu hg19 9 33037024 33037024 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNAJA1 NM_001539 exon8 c.A886G p.K296E ATTGTCAAGCATG . 82.0 4.0 51.0 0.0 . 26 . . Atlas-SNP OMD 4958 hgsc.bcm.edu hg19 9 95179318 95179318 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OMD NM_005014 exon2 c.T523C p.S175P GTTTGGAGATTTC . 142.0 6.0 109.0 0.0 . 42 . . Atlas-SNP NCBP1 4686 hgsc.bcm.edu hg19 9 100429054 100429054 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NCBP1 NM_002486 exon20 c.T1911C p.V637V GTTTGTTTGGGAA . 83.0 4.0 70.0 0.0 . 64 . . Atlas-SNP COL15A1 1306 hgsc.bcm.edu hg19 9 101829178 101829178 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL15A1 NM_001855 exon40 c.T3666C p.A1222A GGCTGCTCTGAAC . 102.0 5.0 80.0 0.0 . 211 . . Atlas-SNP ABCA1 19 hgsc.bcm.edu hg19 9 107581925 107581925 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCA1 NM_005502 exon22 c.T3183C p.A1061A CACACCAGCTGTG . 132.0 6.0 147.0 0.0 . 244 . . Atlas-SNP RGS3 5998 hgsc.bcm.edu hg19 9 116359110 116359110 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RGS3 NM_144488 exon26 c.C3474T p.G1158G GCGGGGCTGCTTC . 144.0 6.0 111.0 0.0 . 251 . . Atlas-SNP COL27A1 85301 hgsc.bcm.edu hg19 9 117052561 117052561 + Missense_Mutation SNP A A T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL27A1 NM_032888 exon47 c.A4318T p.I1440F GAGGGCATCGCTG . 211.0 27.0 186.0 0.0 . 200 . . Atlas-SNP CNTRL 11064 hgsc.bcm.edu hg19 9 123857214 123857214 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CNTRL NM_007018 exon3 c.A397G p.S133G AATCTCAGCTATA . 86.0 4.0 80.0 0.0 . 161 . . Atlas-SNP LHX2 9355 hgsc.bcm.edu hg19 9 126774713 126774713 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LHX2 NM_004789 exon1 c.T86C p.I29T CCGCCATCAGCTC . 45.0 4.0 41.0 0.0 . 30 . . Atlas-SNP GARNL3 84253 hgsc.bcm.edu hg19 9 130087373 130087373 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GARNL3 NM_032293 exon7 c.A593G p.E198G AACAAGAGGTGAG . 96.0 4.0 74.0 0.0 . 83 . . Atlas-SNP SPTAN1 6709 hgsc.bcm.edu hg19 9 131374459 131374459 + Silent SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPTAN1 NM_001130438 exon39 c.G4977C p.L1659L GAAACTGAAAGAA . 196.0 85.0 123.0 0.0 . 266 . . Atlas-SNP NUP214 8021 hgsc.bcm.edu hg19 9 134073130 134073130 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NUP214 NM_005085 exon29 c.A4249G p.T1417A CCAGTCACCAGTG . 89.0 4.0 87.0 0.0 . 166 . . Atlas-SNP RAPGEF1 2889 hgsc.bcm.edu hg19 9 134514137 134514137 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAPGEF1 NM_198679 exon5 c.T539C p.L180P TTGGCGAGGCTTT . 199.0 8.0 142.0 0.0 . 126 . . Atlas-SNP COL5A1 1289 hgsc.bcm.edu hg19 9 137726974 137726974 + Missense_Mutation SNP G G A rs150608071 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL5A1 NM_000093 exon65 c.G5294A p.R1765H CCCTCCGCTTCCT . 129.0 53.0 122.0 0.0 . 323 . G|1.000;A|0.000 Atlas-SNP SOHLH1 402381 hgsc.bcm.edu hg19 9 138586277 138586277 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SOHLH1 NM_001012415 exon7 c.A902G p.D301G GTCCCATCGTCCA . 68.0 4.0 40.0 0.0 . 70 . . Atlas-SNP ITIH2 3698 hgsc.bcm.edu hg19 10 7751097 7751097 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITIH2 NM_002216 exon4 c.A305G p.Q102R AGCCTCAGAATGT . 153.0 7.0 117.0 0.0 . 144 . . Atlas-SNP USP6NL 9712 hgsc.bcm.edu hg19 10 11505825 11505825 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP6NL NM_001080491 exon14 c.A1153G p.K385E AGGGCTTCTTTGG . 82.0 4.0 64.0 0.0 . 57 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17113457 17113457 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CUBN NM_001081 exon19 c.A2593G p.S865G CAGAACTTCCAAT . 122.0 5.0 77.0 0.0 . 515 . . Atlas-SNP NEBL 10529 hgsc.bcm.edu hg19 10 21134239 21134239 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NEBL NM_006393 exon12 c.A1175G p.D392G GTCTTGTCTAAAT . 80.0 5.0 47.0 0.0 . 199 . . Atlas-SNP COMMD3-BMI1 0 hgsc.bcm.edu hg19 10 22618212 22618212 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001204062 exon14 c.A1151G p.D384G AGAGAGATGGACT . 66.0 4.0 61.0 0.0 . . . . Atlas-SNP YME1L1 10730 hgsc.bcm.edu hg19 10 27408356 27408356 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . YME1L1 NM_139312 exon15 c.T1605C p.A535A ACCTCGAGCTATA . 65.0 4.0 43.0 0.0 . 71 . . Atlas-SNP TSPAN15 23555 hgsc.bcm.edu hg19 10 71211441 71211441 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TSPAN15 NM_012339 exon1 c.T91C p.F31L ACCGTGTTCTGGG . 90.0 4.0 64.0 0.0 . 22 . . Atlas-SNP PTEN 5728 hgsc.bcm.edu hg19 10 89717725 89717725 + Nonsense_Mutation SNP T T A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 PTEN,NS,carcinoma,0,5 PTEN NM_000314 exon7 c.T750A p.C250X TGTGTGTGGTGAT . 74.0 50.0 124.0 0.0 . 3652 . . Atlas-SNP CPEB3 22849 hgsc.bcm.edu hg19 10 93904731 93904731 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CPEB3 NM_014912 exon5 c.T1334C p.V445A CCTCCAACAAACA . 72.0 4.0 70.0 0.0 . 43 . . Atlas-SNP EXOC6 54536 hgsc.bcm.edu hg19 10 94688164 94688164 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EXOC6 NM_019053 exon9 c.A957G p.Q319Q ATTGCAACCCCAG . 60.0 4.0 81.0 0.0 . 147 . . Atlas-SNP TLL2 7093 hgsc.bcm.edu hg19 10 98170214 98170214 + Missense_Mutation SNP G G T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TLL2 NM_012465 exon9 c.C1066A p.Q356K TGTCCTGCAGGGT . 59.0 40.0 102.0 0.0 . 122 . . Atlas-SNP MORN4 118812 hgsc.bcm.edu hg19 10 99376156 99376156 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MORN4 NM_001098831 exon5 c.T305C p.F102S TCAGGGAAAGTCA . 53.0 4.0 79.0 0.0 . 24 . . Atlas-SNP GOLGA7B 401647 hgsc.bcm.edu hg19 10 99619216 99619216 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GOLGA7B NM_001010917 exon2 c.T14C p.V5A CTCAGGTCCACAA . 69.0 4.0 77.0 0.0 . 11 . . Atlas-SNP GBF1 8729 hgsc.bcm.edu hg19 10 104128552 104128552 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GBF1 NM_001199378 exon23 c.T2936C p.I979T ATCTCATCATCTC . 80.0 4.0 153.0 0.0 . 142 . . Atlas-SNP NT5C2 22978 hgsc.bcm.edu hg19 10 104849568 104849568 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NT5C2 NM_012229 exon19 c.A1547G p.D516G TCAGTGTCTTTGA . 134.0 6.0 185.0 0.0 . 41 . . Atlas-SNP WDR96 80217 hgsc.bcm.edu hg19 10 105921776 105921776 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WDR96 NM_025145 exon26 c.T3357C p.A1119A CATCAGAGCTCGG . 95.0 4.0 114.0 0.0 . 183 . . Atlas-SNP ADD3 120 hgsc.bcm.edu hg19 10 111883900 111883900 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADD3 NM_001121 exon10 c.T1269C p.S423S ACTCTCTCCTCTC . 100.0 4.0 125.0 0.0 . 89 . . Atlas-SNP SHOC2 8036 hgsc.bcm.edu hg19 10 112769581 112769581 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SHOC2 NM_007373 exon8 c.A1533G p.E511E TCCTGAAGAAATT . 96.0 4.0 127.0 0.0 . 49 . . Atlas-SNP PNLIPRP3 119548 hgsc.bcm.edu hg19 10 118196248 118196248 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PNLIPRP3 NM_001011709 exon2 c.A75G p.L25L AAGGTTAGGGTGT . 94.0 4.0 88.0 0.0 . 101 . . Atlas-SNP SLC18A2 6571 hgsc.bcm.edu hg19 10 119026263 119026263 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC18A2 NM_003054 exon11 c.T1011C p.A337A GCCAGCTAGTATC . 85.0 4.0 139.0 0.0 . 58 . . Atlas-SNP EIF3A 8661 hgsc.bcm.edu hg19 10 120828985 120828985 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EIF3A NM_003750 exon6 c.A923G p.K308R AGATTCTTTCTCA . 68.0 4.0 93.0 0.0 . 142 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 134980888 134980888 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KNDC1 NM_152643 exon2 c.A106G p.N36D CAGGAGAACGTGT . 125.0 5.0 103.0 0.0 . 155 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 134999520 134999520 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KNDC1 NM_152643 exon6 c.A668G p.N223S CAGGAAACGCTGG . 92.0 5.0 117.0 0.0 . 155 . . Atlas-SNP B4GALNT4 338707 hgsc.bcm.edu hg19 11 376081 376081 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . B4GALNT4 NM_178537 exon12 c.T1103C p.L368P TGTACCTGTCCTT . 62.0 4.0 55.0 0.0 . 83 . . Atlas-SNP ZNF195 7748 hgsc.bcm.edu hg19 11 3380971 3380971 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF195 NM_001130520 exon6 c.T1267C p.S423P GGTCTGAGAACCA . 68.0 4.0 59.0 0.0 . 77 . . Atlas-SNP RRM1 6240 hgsc.bcm.edu hg19 11 4127278 4127278 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RRM1 NM_001033 exon3 c.T111C p.A37A GTAGGCTCAGATC . 82.0 5.0 68.0 0.0 . 31 . . Atlas-SNP SMPD1 6609 hgsc.bcm.edu hg19 11 6411941 6411941 + Missense_Mutation SNP C C T rs78250081 bycluster TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMPD1 NM_000543 exon1 c.C113T p.A38V TGCTGGCGCTGGC . 20.0 5.0 13.0 0.0 . 108 . . Atlas-SNP OR6A2 8590 hgsc.bcm.edu hg19 11 6816516 6816516 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OR6A2 NM_003696 exon1 c.A424G p.S142G GGCCACTGACAAT . 78.0 4.0 66.0 0.0 . 68 . . Atlas-SNP NLRP14 338323 hgsc.bcm.edu hg19 11 7092523 7092523 + Missense_Mutation SNP G G T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NLRP14 NM_176822 exon12 c.G3266T p.W1089L TGTCTTGGTGGTG . 74.0 22.0 52.0 0.0 . 187 . . Atlas-SNP ZBED5 58486 hgsc.bcm.edu hg19 11 10875063 10875063 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZBED5 NM_021211 exon3 c.T1430C p.L477P TCTGCAAGATATG . 94.0 4.0 95.0 0.0 . 50 . . Atlas-SNP CCDC73 493860 hgsc.bcm.edu hg19 11 32722338 32722338 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC73 NM_001008391 exon5 c.G314G p.C105C AATACCTTTTCTT . 82.0 4.0 62.0 0.0 . 136 . . Atlas-SNP NAT10 55226 hgsc.bcm.edu hg19 11 34158558 34158558 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NAT10 NM_024662 exon21 c.T2196C p.Y732Y TGTTTATCTGAGA . 122.0 6.0 95.0 0.0 . 78 . . Atlas-SNP PDHX 8050 hgsc.bcm.edu hg19 11 35016619 35016619 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PDHX NM_003477 exon11 c.T1406C p.V469A TAACAGTCACAAT . 98.0 4.0 84.0 0.0 . 40 . . Atlas-SNP C11orf84 144097 hgsc.bcm.edu hg19 11 63586119 63586119 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C11orf84 NM_138471 exon4 c.A728G p.D243G ACCCTGACCCAGG . 73.0 5.0 34.0 0.0 . 33 . . Atlas-SNP RCOR2 283248 hgsc.bcm.edu hg19 11 63681765 63681765 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 RCOR2,colon,carcinoma,0,1 RCOR2 NM_173587 exon7 c.G643A p.G215R GCTCTCCCTCACT . 221.0 64.0 121.0 0.0 . 43 . . Atlas-SNP CDC42BPG 55561 hgsc.bcm.edu hg19 11 64598997 64598997 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDC42BPG NM_017525 exon28 c.C3284T p.T1095M CAGAGCGTGTGAG . 240.0 30.0 180.0 0.0 . 101 . . Atlas-SNP CST6 1474 hgsc.bcm.edu hg19 11 65779730 65779730 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CST6 NM_001323 exon1 c.C215T p.T72M GAGACACGCACAT . 94.0 4.0 60.0 0.0 . 14 . . Atlas-SNP RIN1 9610 hgsc.bcm.edu hg19 11 66101126 66101126 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RIN1 NM_004292 exon8 c.A1595G p.E532G GCGCCCTCCCCTG . 221.0 9.0 172.0 0.0 . 64 . . Atlas-SNP PELI3 246330 hgsc.bcm.edu hg19 11 66243164 66243164 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PELI3 NM_145065 exon8 c.T936C p.A312A GCGGGCTCCCACA . 216.0 10.0 127.0 0.0 . 36 . . Atlas-SNP RPS6KB2 6199 hgsc.bcm.edu hg19 11 67200629 67200629 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RPS6KB2 NM_003952 exon9 c.A740G p.N247S GCCACAACCGGGC . 87.0 24.0 60.0 0.0 . 92 . . Atlas-SNP PITPNM1 9600 hgsc.bcm.edu hg19 11 67261213 67261213 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PITPNM1 NM_004910 exon21 c.T3104C p.V1035A ATGGAGACGCTGG . 193.0 10.0 114.0 0.0 . 84 . . Atlas-SNP ALG8 79053 hgsc.bcm.edu hg19 11 77812229 77812229 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ALG8 NM_024079 exon13 c.T1362C p.P454P AAAAAGAGGTTTT . 94.0 5.0 58.0 0.0 . 54 . . Atlas-SNP USP35 57558 hgsc.bcm.edu hg19 11 77920940 77920940 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP35 NM_020798 exon10 c.A2039G p.E680G AGAGGGAGGAAGA . 188.0 9.0 109.0 0.0 . 179 . . Atlas-SNP TMEM135 65084 hgsc.bcm.edu hg19 11 87020678 87020678 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM135 NM_022918 exon10 c.T900C p.L300L CCAGCTTGGAGCT . 105.0 5.0 55.0 0.0 . 40 . . Atlas-SNP TYR 7299 hgsc.bcm.edu hg19 11 89028385 89028385 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TYR NM_000372 exon5 c.G1441C p.A481P CTTGGGGCGGCGA . 384.0 25.0 238.0 0.0 . 130 . . Atlas-SNP CNTN5 53942 hgsc.bcm.edu hg19 11 99715962 99715962 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CNTN5 NM_001243270 exon5 c.T545C p.I182T GGAGTATTCTTAG . 86.0 4.0 51.0 0.0 . 324 . . Atlas-SNP TRPC6 7225 hgsc.bcm.edu hg19 11 101454149 101454149 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRPC6 NM_004621 exon1 c.A86G p.Q29R TAGTCCTGGCTCT . 67.0 4.0 42.0 0.0 . 132 . . Atlas-SNP ABCG4 64137 hgsc.bcm.edu hg19 11 119028987 119028987 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCG4 NM_022169 exon10 c.T1112C p.L371P GCACCCTCACACA . 174.0 7.0 117.0 0.0 . 77 . . Atlas-SNP EI24 9538 hgsc.bcm.edu hg19 11 125452299 125452299 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 EI24_ENST00000278903,caecum,carcinoma,0,2 EI24 NM_001007277 exon9 c.G731A p.R244K AGCAAAGACCCTG . 35.0 4.0 36.0 1.0 . 33 . . Atlas-SNP WNT5B 81029 hgsc.bcm.edu hg19 12 1741875 1741875 + Silent SNP C C G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WNT5B NM_032642 exon3 c.C132G p.A44A CGGTGCCCAGCCC . 147.0 61.0 129.0 0.0 . 27 . . Atlas-SNP DYRK4 8798 hgsc.bcm.edu hg19 12 4700393 4700393 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DYRK4 NM_003845 exon3 c.G47C p.S16T ACCCTAGCATTAA . 197.0 66.0 170.0 0.0 . 75 . . Atlas-SNP NOP2 4839 hgsc.bcm.edu hg19 12 6672806 6672806 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NOP2 NM_001258309 exon8 c.T761C p.L254P GGGGGCAGCACAA . 95.0 4.0 96.0 0.0 . 44 . . Atlas-SNP LPAR5 57121 hgsc.bcm.edu hg19 12 6729711 6729711 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LPAR5 NM_001142961 exon2 c.T704C p.L235P AGCAGGAGGCGCA . 30.0 4.0 42.0 0.0 . 30 . . Atlas-SNP ATN1 1822 hgsc.bcm.edu hg19 12 7050600 7050600 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATN1 NM_001007026 exon9 c.A3422G p.Q1141R AGCTGCAGGCCAT . 81.0 4.0 78.0 0.0 . 95 . . Atlas-SNP CLSTN3 9746 hgsc.bcm.edu hg19 12 7295529 7295529 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CLSTN3 NM_014718 exon11 c.T1605C p.G535G CTCAGGTCGCCTG . 233.0 11.0 183.0 0.0 . 84 . . Atlas-SNP LRP6 4040 hgsc.bcm.edu hg19 12 12300340 12300340 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRP6 NM_002336 exon15 c.T3357C p.A1119A TGAATCAGCCCAA . 117.0 5.0 92.0 0.0 . 170 . . Atlas-SNP CDKN1B 1027 hgsc.bcm.edu hg19 12 12871837 12871837 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDKN1B NM_004064 exon2 c.A554G p.E185G CTGTGGAGCAGAC . 71.0 4.0 62.0 0.0 . 48 . . Atlas-SNP PLEKHA5 54477 hgsc.bcm.edu hg19 12 19475253 19475253 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLEKHA5 NM_001256470 exon19 c.A2227G p.S743G AAGTTAAGCCGAT . 53.0 4.0 18.0 0.0 . 198 . . Atlas-SNP GYS2 2998 hgsc.bcm.edu hg19 12 21692268 21692268 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GYS2 NM_021957 exon15 c.A1814G p.Y605C TGCTGGTAATACT . 89.0 4.0 101.0 0.0 . 110 . . Atlas-SNP ABCC9 10060 hgsc.bcm.edu hg19 12 21960279 21960279 + Splice_Site SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCC9 NM_020297 exon37 c.4449+1G>A . CACTCACTGTGGC . 97.0 5.0 96.0 0.0 . 411 . . Atlas-SNP OVCH1 341350 hgsc.bcm.edu hg19 12 29630051 29630051 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OVCH1 NM_183378 exon12 c.A1361G p.E454G TGCTTCTCTGGAG . 89.0 4.0 86.0 0.0 . 195 . . Atlas-SNP TMTC1 83857 hgsc.bcm.edu hg19 12 29904627 29904627 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMTC1 NM_001193451 exon5 c.T910C p.S304P GTGGGGACACTGG . 103.0 5.0 91.0 0.0 . 147 . . Atlas-SNP DENND5B 160518 hgsc.bcm.edu hg19 12 31632582 31632582 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DENND5B NM_144973 exon3 c.A845G p.N282S ACCAGGTTCTCTA . 95.0 4.0 76.0 0.0 . 114 . . Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43822261 43822261 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADAMTS20 NM_025003 exon26 c.A3728G p.E1243G TAATTCTCATCAA . 162.0 7.0 153.0 0.0 . 635 . . Atlas-SNP ANO6 196527 hgsc.bcm.edu hg19 12 45771870 45771870 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANO6 NM_001204803 exon11 c.T1202C p.V401A CCCTGGTCTTTGC . 94.0 5.0 80.0 0.0 . 163 . . Atlas-SNP RAPGEF3 10411 hgsc.bcm.edu hg19 12 48134787 48134787 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAPGEF3 NM_001098531 exon20 c.T1960C p.S654P CAGCAGAGCCCAC . 198.0 9.0 192.0 0.0 . 98 . . Atlas-SNP DIP2B 57609 hgsc.bcm.edu hg19 12 51077012 51077012 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DIP2B NM_173602 exon10 c.A1298G p.E433G CTATAGAGGTACC . 82.0 4.0 53.0 0.0 . 167 . . Atlas-SNP TFCP2 7024 hgsc.bcm.edu hg19 12 51510142 51510142 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TFCP2 NM_001173452 exon4 c.A413G p.E138G CAGCCCTCTAGCT . 200.0 10.0 166.0 0.0 . 49 . . Atlas-SNP ACVR1B 91 hgsc.bcm.edu hg19 12 52385707 52385707 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ACVR1B NM_020328 exon9 c.A1445G p.E482G CCATTGAGGAAAT . 150.0 6.0 140.0 0.0 . 167 . . Atlas-SNP KRT1 3848 hgsc.bcm.edu hg19 12 53069297 53069297 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 KRT1,NS,carcinoma,0,1 KRT1 NM_006121 exon9 c.T1615C p.Y539H AACCATAGCTACC . 56.0 3.0 43.0 0.0 . 110 . . Atlas-SNP ITGA5 3678 hgsc.bcm.edu hg19 12 54797420 54797420 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITGA5 NM_002205 exon17 c.A1765G p.I589V GGTAGATCTTCAT . 111.0 5.0 71.0 0.0 . 99 . . Atlas-SNP PDE1B 5153 hgsc.bcm.edu hg19 12 54968906 54968906 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PDE1B NM_000924 exon11 c.T1089C p.S363S CCTGTCTCTACTG . 95.0 4.0 89.0 0.0 . 76 . . Atlas-SNP OR6C70 390327 hgsc.bcm.edu hg19 12 55863303 55863303 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OR6C70 NM_001005499 exon1 c.T620C p.V207A AATGTGACAATAA . 100.0 6.0 66.0 0.0 . 35 . . Atlas-SNP GLI1 2735 hgsc.bcm.edu hg19 12 57857530 57857530 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GLI1 NM_005269 exon2 c.T56C p.L19P GCTGTCTCCGGCC . 53.0 4.0 48.0 0.0 . 141 . . Atlas-SNP SLC16A7 9194 hgsc.bcm.edu hg19 12 60098572 60098572 + Splice_Site SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC16A7 . . . . CCACTAGAGGAGC . 92.0 38.0 100.0 0.0 . 82 . . Atlas-SNP CEP290 80184 hgsc.bcm.edu hg19 12 88454605 88454605 + Splice_Site SNP A A T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CEP290 NM_025114 exon48 c.6522+2T>A . AAAATTACCTTCA . 80.0 7.0 84.0 0.0 . 195 . . Atlas-SNP CEP290 80184 hgsc.bcm.edu hg19 12 88454606 88454606 + Splice_Site SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CEP290 NM_025114 exon48 c.6522+1G>T . AAATTACCTTCAA . 82.0 5.0 86.0 0.0 . 195 . . Atlas-SNP CCDC41 51134 hgsc.bcm.edu hg19 12 94769731 94769731 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC41 NM_016122 exon8 c.T864C p.S288S TTGTTCACTGCTT . 69.0 4.0 71.0 0.0 . 59 . . Atlas-SNP NEDD1 121441 hgsc.bcm.edu hg19 12 97328852 97328852 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NEDD1 NM_001135175 exon6 c.T609C p.S203S TCAGAGTCCATAC . 203.0 9.0 192.0 0.0 . 47 . . Atlas-SNP APAF1 317 hgsc.bcm.edu hg19 12 99060128 99060128 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . APAF1 NM_181868 exon9 c.A1355G p.Q452R GCAGCCAGCTTCA . 99.0 4.0 75.0 0.0 . 111 . . Atlas-SNP ANKS1B 56899 hgsc.bcm.edu hg19 12 99129364 99129364 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKS1B NM_152788 exon26 c.A3721G p.T1241A CCTCAGTGTGTCT . 67.0 4.0 64.0 0.0 . 180 . . Atlas-SNP ANKS1B 56899 hgsc.bcm.edu hg19 12 100173672 100173672 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKS1B NM_152788 exon6 c.T824C p.L275P ATCTGGAGAGATT . 167.0 7.0 133.0 0.0 . 180 . . Atlas-SNP GNPTAB 79158 hgsc.bcm.edu hg19 12 102155033 102155033 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GNPTAB NM_024312 exon15 c.A3007G p.S1003G CTGCACTCATGAG . 94.0 4.0 67.0 0.0 . 120 . . Atlas-SNP NAA25 80018 hgsc.bcm.edu hg19 12 112479858 112479858 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NAA25 NM_024953 exon20 c.C2425G p.L809V GGTCTAGTAAAGA . 25.0 6.0 17.0 0.0 . 105 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112703054 112703054 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001109662 exon16 c.A2112G p.R704R GGATTCTCGTACA . 92.0 4.0 74.0 0.0 . . . . Atlas-SNP TBX3 6926 hgsc.bcm.edu hg19 12 115112498 115112498 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TBX3 NM_016569 exon7 c.T1242C p.A414A AAGGTGAGCCTTG . 67.0 4.0 89.0 0.0 . 106 . . Atlas-SNP ORAI1 84876 hgsc.bcm.edu hg19 12 122064777 122064777 + Missense_Mutation SNP C C G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ORAI1 NM_032790 exon1 c.C130G p.P44A GCCCCGCCACCGC . 13.0 5.0 6.0 0.0 . 66 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124323027 124323027 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNAH10 NM_207437 exon28 c.C4573A p.P1525T AAAGACCCCGTGA . 50.0 19.0 72.0 0.0 . 888 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124354958 124354958 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNAH10 NM_207437 exon43 c.A7211G p.N2404S AACGGAATCAATG . 65.0 4.0 78.0 0.0 . 888 . . Atlas-SNP FBRSL1 57666 hgsc.bcm.edu hg19 12 133102379 133102379 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FBRSL1 NM_001142641 exon3 c.A549G p.E183E CCTCGAAGCCACC . 74.0 4.0 101.0 0.0 . 47 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23907453 23907453 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SACS NM_014363 exon10 c.T10562C p.L3521P CTTTCCAGTTTTT . 87.0 4.0 125.0 0.0 . 871 . . Atlas-SNP USP12 219333 hgsc.bcm.edu hg19 13 27664255 27664255 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP12 NM_182488 exon5 c.A614G p.D205G TCCACGTCAACAG . 118.0 5.0 130.0 0.0 . 35 . . Atlas-SNP USP12 219333 hgsc.bcm.edu hg19 13 27679961 27679961 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP12 NM_182488 exon3 c.T250C p.L84L CTGCTAAGCATGT . 54.0 4.0 60.0 0.0 . 35 . . Atlas-SNP PAN3 255967 hgsc.bcm.edu hg19 13 28854573 28854573 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PAN3 NM_175854 exon16 c.G2214C p.R738S AAACAGGATGCGA . 73.0 48.0 75.0 0.0 . 123 . . Atlas-SNP TRPC4 7223 hgsc.bcm.edu hg19 13 38211176 38211176 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRPC4 NM_003306 exon11 c.A2813G p.E938G ACCTTCTCTGACT . 125.0 5.0 183.0 0.0 . 389 . . Atlas-SNP ALG11 440138 hgsc.bcm.edu hg19 13 52602568 52602568 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ALG11 NM_001004127 exon4 c.A1321G p.S441G GCTGAGAGTGAAG . 99.0 4.0 115.0 0.0 . 39 . . Atlas-SNP NEK3 4752 hgsc.bcm.edu hg19 13 52707932 52707932 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NEK3 NM_002498 exon15 c.A1329G p.K443K GGGGCCTTTCAAG . 60.0 4.0 84.0 0.0 . 41 . . Atlas-SNP PCDH8 5100 hgsc.bcm.edu hg19 13 53418699 53418699 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PCDH8 NM_002590 exon3 c.T3209C p.V1070A GATTACACATTTT . 95.0 4.0 123.0 0.0 . 95 . . Atlas-SNP DIS3 22894 hgsc.bcm.edu hg19 13 73342977 73342977 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DIS3 NM_014953 exon14 c.T1829C p.L610P CCACGGAGACTAG . 170.0 7.0 214.0 0.0 . 103 . . Atlas-SNP GPC5 2262 hgsc.bcm.edu hg19 13 92345688 92345688 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPC5 NM_004466 exon3 c.A573G p.S191S ATACTCAGAATGC . 74.0 5.0 85.0 0.0 . 140 . . Atlas-SNP TPP2 7174 hgsc.bcm.edu hg19 13 103268804 103268804 + Missense_Mutation SNP G G T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TPP2 NM_003291 exon4 c.G449T p.C150F AAGCCTGTAGAAA . 73.0 38.0 58.0 0.0 . 124 . . Atlas-SNP ARHGEF7 8874 hgsc.bcm.edu hg19 13 111919988 111919988 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARHGEF7 NM_001113511 exon10 c.T1107C p.P369P TCACCCTTCTGCA . 96.0 4.0 90.0 0.0 . 157 . . Atlas-SNP TUBGCP3 10426 hgsc.bcm.edu hg19 13 113170854 113170854 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TUBGCP3 NM_006322 exon17 c.A1986G p.R662R AAATACTCTTAGG . 95.0 4.0 87.0 0.0 . 74 . . Atlas-SNP RIPK3 11035 hgsc.bcm.edu hg19 14 24807655 24807655 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RIPK3 NM_006871 exon4 c.A590G p.K197R GAGGCCTTCCGGT . 72.0 4.0 47.0 0.0 . 43 . . Atlas-SNP HECTD1 25831 hgsc.bcm.edu hg19 14 31576779 31576779 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HECTD1 NM_015382 exon37 c.T6612C p.S2204S GTGACGAGATTCA . 54.0 4.0 55.0 0.0 . 159 . . Atlas-SNP NUBPL 80224 hgsc.bcm.edu hg19 14 32142559 32142559 + Splice_Site SNP A A C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NUBPL NM_025152 exon5 c.383-2A>C . TTTTCCAGGCAAC . 60.0 4.0 51.0 0.0 . 21 . . Atlas-SNP PAX9 5083 hgsc.bcm.edu hg19 14 37132384 37132384 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PAX9 NM_006194 exon3 c.G287A p.G96D ACCCCGGCATCTT . 184.0 11.0 112.0 0.0 . 34 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64494280 64494280 + Silent SNP A A T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SYNE2 NM_182914 exon43 c.A6483T p.L2161L AGAACTAAAGAAG . 145.0 6.0 125.0 0.0 . 577 . . Atlas-SNP GSTZ1 2954 hgsc.bcm.edu hg19 14 77797449 77797449 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GSTZ1 NM_145870 exon9 c.T562C p.S188P ATCAGCTCCATCA . 136.0 6.0 114.0 0.0 . 35 . . Atlas-SNP EML5 161436 hgsc.bcm.edu hg19 14 89206909 89206909 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EML5 NM_183387 exon5 c.G533A p.S178N CATAAACTCCAGA . 121.0 6.0 116.0 0.0 . 141 . . Atlas-SNP TDP1 55775 hgsc.bcm.edu hg19 14 90446955 90446955 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TDP1 NM_018319 exon8 c.A863G p.D288G ATGCTGACTGGCA . 88.0 4.0 70.0 0.0 . 47 . . Atlas-SNP RIN3 79890 hgsc.bcm.edu hg19 14 93022212 93022212 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RIN3 NM_024832 exon2 c.A161G p.E54G TCCTGGAGAAGCT . 88.0 4.0 81.0 0.0 . 81 . . Atlas-SNP KLC1 3831 hgsc.bcm.edu hg19 14 104143836 104143836 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KLC1 NM_182923 exon12 c.A1464G p.E488E AGAAGAAGCTGCT . 82.0 4.0 43.0 0.0 . 54 . . Atlas-SNP AKT1 207 hgsc.bcm.edu hg19 14 105246536 105246536 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AKT1 NM_005163 exon3 c.T64C p.W22R GCCGCCAGGTCTT . 153.0 7.0 127.0 0.0 . 379 . . Atlas-SNP BRF1 2972 hgsc.bcm.edu hg19 14 105676904 105676904 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BRF1 NM_001519 exon18 c.A2018G p.E673G TCGTCCTCATCGC . 108.0 5.0 87.0 0.0 . 102 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 34018695 34018695 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RYR3 NM_001243996 exon46 c.T7021C p.S2341P CTGCCCTCCCTCA . 108.0 6.0 79.0 0.0 . 760 . . Atlas-SNP KATNBL1 79768 hgsc.bcm.edu hg19 15 34455865 34455865 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_024713 exon2 c.A13G p.T5A TGTGGGTTTCTGA . 82.0 4.0 61.0 0.0 . . . . Atlas-SNP FSIP1 161835 hgsc.bcm.edu hg19 15 40031895 40031895 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FSIP1 NM_152597 exon7 c.A751G p.N251D CCTGGTTGTGTTT . 118.0 5.0 119.0 0.0 . 53 . . Atlas-SNP CASC5 57082 hgsc.bcm.edu hg19 15 40914323 40914323 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CASC5 NM_170589 exon11 c.G1939A p.E647K CGTAATGAACCAT . 97.0 4.0 95.0 0.0 . 269 . . Atlas-SNP RPAP1 26015 hgsc.bcm.edu hg19 15 41826958 41826958 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RPAP1 NM_015540 exon6 c.T717C p.A239A CTCAGGAGCCATG . 122.0 6.0 98.0 0.0 . 111 . . Atlas-SNP CCNDBP1 23582 hgsc.bcm.edu hg19 15 43483239 43483239 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCNDBP1 NM_012142 exon7 c.A578G p.Q193R TGGAGCAGGTGAG . 93.0 7.0 104.0 0.0 . 22 . . Atlas-SNP SPATA5L1 79029 hgsc.bcm.edu hg19 15 45707941 45707941 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPATA5L1 NM_024063 exon5 c.A1801G p.T601A CTTAAGACAATAG . 79.0 4.0 64.0 0.0 . 40 . . Atlas-SNP HDC 3067 hgsc.bcm.edu hg19 15 50534669 50534669 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HDC NM_002112 exon12 c.A1777G p.S593G GAGCACTCACTGG . 104.0 6.0 101.0 0.0 . 86 . . Atlas-SNP AP4E1 23431 hgsc.bcm.edu hg19 15 51285814 51285814 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AP4E1 NM_007347 exon17 c.A2338G p.I780V AGTACAATCAACC . 84.0 4.0 75.0 0.0 . 78 . . Atlas-SNP MNS1 55329 hgsc.bcm.edu hg19 15 56723587 56723587 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MNS1 NM_018365 exon9 c.T1379C p.L460P TAGCCTAGTAAGT . 204.0 9.0 162.0 0.0 . 39 . . Atlas-SNP VPS13C 54832 hgsc.bcm.edu hg19 15 62283910 62283910 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . VPS13C NM_020821 exon17 c.A1445G p.E482G TTAGACTCTTTCT . 147.0 6.0 143.0 0.0 . 506 . . Atlas-SNP IGDCC4 57722 hgsc.bcm.edu hg19 15 65676554 65676554 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IGDCC4 NM_020962 exon20 c.G3546T p.R1182S CAACTCCCTGTCC . 178.0 62.0 143.0 0.0 . 95 . . Atlas-SNP LRRC49 54839 hgsc.bcm.edu hg19 15 71188254 71188254 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRRC49 NM_001199017 exon3 c.A187G p.R63G CTTGAAAGAAACT . 90.0 4.0 59.0 0.0 . 73 . . Atlas-SNP ANKRD34C 390616 hgsc.bcm.edu hg19 15 79586088 79586088 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKRD34C NM_001146341 exon2 c.A462G p.T154T AACAACAGATAAA . 124.0 5.0 110.0 0.0 . 29 . . Atlas-SNP ADAMTSL3 57188 hgsc.bcm.edu hg19 15 84539614 84539614 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADAMTSL3 NM_207517 exon9 c.T863C p.V288A CCGGCGTCTTTCT . 31.0 6.0 40.0 0.0 . 290 . . Atlas-SNP ALPK3 57538 hgsc.bcm.edu hg19 15 85400767 85400767 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ALPK3 NM_020778 exon6 c.A3404G p.E1135G GCAGTGAGGGGGC . 97.0 4.0 96.0 0.0 . 289 . . Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86207943 86207943 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AKAP13 NM_006738 exon13 c.A4961G p.D1654G AAGAGGATCTGGA . 94.0 4.0 81.0 0.0 . 394 . . Atlas-SNP CHD2 1106 hgsc.bcm.edu hg19 15 93547897 93547897 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CHD2 NM_001271 exon34 c.T4329C p.G1443G TCAGGGTCCTGTC . 104.0 5.0 100.0 0.0 . 280 . . Atlas-SNP IGF1R 3480 hgsc.bcm.edu hg19 15 99434602 99434602 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IGF1R NM_000875 exon3 c.G689A p.C230Y ATGAGTGCTGCCA . 93.0 4.0 50.0 0.0 . 147 . . Atlas-SNP TSR3 115939 hgsc.bcm.edu hg19 16 1400082 1400082 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001001410 exon4 c.A680G p.E227G GGGCTCTCCTTGG . 129.0 6.0 70.0 0.0 . . . . Atlas-SNP UNKL 64718 hgsc.bcm.edu hg19 16 1449385 1449385 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UNKL NM_001193388 exon5 c.T724C p.F242L ACTGGAACCGCCG . 91.0 4.0 75.0 0.0 . 46 . . Atlas-SNP CRAMP1L 57585 hgsc.bcm.edu hg19 16 1719148 1719148 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CRAMP1L NM_020825 exon18 c.T3481C p.S1161P GACTCCTCGCTCA . 79.0 4.0 90.0 0.0 . 60 . . Atlas-SNP ZNF598 90850 hgsc.bcm.edu hg19 16 2048327 2048327 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF598 NM_178167 exon14 c.T2621C p.L874P TGCGCGAGCACCT . 75.0 4.0 96.0 0.0 . 55 . . Atlas-SNP CCDC64B 146439 hgsc.bcm.edu hg19 16 3085376 3085376 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC64B NM_001103175 exon1 c.G122T p.G41V CCTGGGCCCCCTC . 134.0 7.0 97.0 0.0 . 19 . . Atlas-SNP GLIS2 84662 hgsc.bcm.edu hg19 16 4385330 4385330 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GLIS2 NM_032575 exon5 c.T711C p.C237C CCGCTGTCCGACC . 162.0 7.0 153.0 0.0 . 29 . . Atlas-SNP VASN 114990 hgsc.bcm.edu hg19 16 4432163 4432163 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . VASN NM_138440 exon2 c.G1285A p.A429T CACCTGGCGTGCT . 80.0 4.0 124.0 0.0 . 21 . . Atlas-SNP CDR2 1039 hgsc.bcm.edu hg19 16 22376296 22376296 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDR2 NM_001802 exon2 c.A119G p.D40G TTCCGATCCAGTA . 137.0 6.0 138.0 0.0 . 34 . . Atlas-SNP GTF3C1 2975 hgsc.bcm.edu hg19 16 27503691 27503691 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GTF3C1 NM_001520 exon19 c.A3119G p.D1040G TGCAGGTCAAACC . 170.0 8.0 115.0 0.0 . 210 . . Atlas-SNP ZNF646 9726 hgsc.bcm.edu hg19 16 31089058 31089058 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 ZNF646,NS,carcinoma,0,1 ZNF646 NM_014699 exon2 c.T1413C p.G471G GTGTGGTCGTGCT . 109.0 5.0 94.0 0.0 . 133 . . Atlas-SNP PRSS36 146547 hgsc.bcm.edu hg19 16 31152016 31152016 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PRSS36 NM_001258291 exon13 c.T1964C p.L655P TGTGGGAGGGAGC . 194.0 9.0 133.0 0.0 . 50 . . Atlas-SNP CETP 1071 hgsc.bcm.edu hg19 16 57005938 57005938 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CETP NM_000078 exon8 c.C693T p.D231D GGTGGACATTTCC . 122.0 35.0 131.0 0.0 . 50 . . Atlas-SNP NLRC5 84166 hgsc.bcm.edu hg19 16 57063748 57063748 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NLRC5 NM_032206 exon8 c.A2307G p.L769L TCACCTACCACGG . 100.0 4.0 106.0 0.0 . 186 . . Atlas-SNP CTRL 1506 hgsc.bcm.edu hg19 16 67963841 67963841 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CTRL NM_001907 exon7 c.A791G p.N264S GCTCAGTTGTAGG . 97.0 4.0 92.0 0.0 . 11 . . Atlas-SNP SLC12A4 6560 hgsc.bcm.edu hg19 16 67985797 67985797 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC12A4 NM_001145962 exon7 c.A1067G p.D356G TAGGGGTCACAGG . 167.0 7.0 136.0 0.0 . 81 . . Atlas-SNP NOB1 28987 hgsc.bcm.edu hg19 16 69788569 69788569 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NOB1 NM_014062 exon2 c.A124G p.T42A TGCGTGTGGCCTT . 104.0 5.0 63.0 0.0 . 24 . . Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72829897 72829897 + Silent SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZFHX3 NM_006885 exon9 c.C6684G p.P2228P CGAAGGGGGCCGG . 173.0 68.0 143.0 0.0 . 404 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88494980 88494980 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF469 NM_001127464 exon1 c.T1102C p.F368L AGACCCTTCTCTG . 111.0 5.0 74.0 0.0 . 121 . . Atlas-SNP PIEZO1 9780 hgsc.bcm.edu hg19 16 88786816 88786816 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PIEZO1 NM_001142864 exon41 c.A5926G p.I1976V CAAAAATGATGAT . 96.0 4.0 81.0 0.0 . 79 . . Atlas-SNP ZNF778 197320 hgsc.bcm.edu hg19 16 89294115 89294115 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF778 NM_001201407 exon7 c.A1419G p.G473G CACTGGAGAGAAA . 59.0 5.0 53.0 0.0 . 67 . . Atlas-SNP TCF25 22980 hgsc.bcm.edu hg19 16 89972662 89972662 + Silent SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TCF25 NM_014972 exon15 c.G1689A p.E563E CTCTGAGATCAAG . 92.0 4.0 103.0 0.0 . 61 . . Atlas-SNP MYO1C 4641 hgsc.bcm.edu hg19 17 1383903 1383903 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 MYO1C NM_001080779 exon7 c.T824C p.V275A GAGGAGACTTTGG . 79.0 4.0 93.0 0.0 . 57 . . Atlas-SNP TSR1 55720 hgsc.bcm.edu hg19 17 2228075 2228075 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TSR1 NM_018128 exon13 c.A2069G p.D690G ATTCTGTCTGGAT . 138.0 6.0 124.0 0.0 . 57 . . Atlas-SNP CLUH 23277 hgsc.bcm.edu hg19 17 2604059 2604059 + Silent SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_015229 exon8 c.C972T p.A324A CTGGGGGGCTGTC . 71.0 4.0 65.0 0.0 . . . . Atlas-SNP ATP2A3 489 hgsc.bcm.edu hg19 17 3854948 3854948 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP2A3 NM_174956 exon4 c.C251G p.T84S GTCGTGGTCTCCT . 167.0 103.0 222.0 0.0 . 148 . . Atlas-SNP DVL2 1856 hgsc.bcm.edu hg19 17 7132947 7132947 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DVL2 NM_004422 exon6 c.A707G p.H236R CGCCGGTGGCGCT . 81.0 4.0 89.0 0.0 . 49 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577557 7577557 + Missense_Mutation SNP A A T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 TP53_ENST00000545858,caecum,carcinoma,0,1 TP53 NM_000546 exon7 c.T724A p.C242S CCATGCAGGAACT . 129.0 81.0 224.0 0.0 . 33396 . . Atlas-SNP CHD3 1107 hgsc.bcm.edu hg19 17 7809999 7809999 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CHD3 NM_001005271 exon29 c.C4664A p.S1555Y TCATGTCTCTCGT . 78.0 48.0 105.0 0.0 . 169 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11686973 11686973 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNAH9 NM_001372 exon40 c.A7729G p.S2577G GATCGGAGCAAGC . 109.0 5.0 84.0 0.0 . 695 . . Atlas-SNP KCNJ18 100134444 hgsc.bcm.edu hg19 17 21319360 21319360 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 KCNJ12,NS,carcinoma,0,1 . NM_001194958 exon3 c.C706T p.R236W AAGCCGCGGGTCA . 236.0 23.0 190.0 1.0 . . . . Atlas-SNP EFCAB5 374786 hgsc.bcm.edu hg19 17 28407894 28407894 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EFCAB5 NM_198529 exon17 c.T3321C p.P1107P TCTGCCTCTTCAA . 144.0 6.0 101.0 0.0 . 122 . . Atlas-SNP MYO1D 4642 hgsc.bcm.edu hg19 17 30965824 30965824 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYO1D NM_015194 exon20 c.A2625G p.R875R AATTGCTCTGTCT . 184.0 8.0 164.0 0.0 . 93 . . Atlas-SNP HNF1B 6928 hgsc.bcm.edu hg19 17 36104535 36104535 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HNF1B NM_001165923 exon1 c.T341C p.L114P TACCTGAGCATCC . 61.0 4.0 47.0 0.0 . 61 . . Atlas-SNP ERBB2 2064 hgsc.bcm.edu hg19 17 37868282 37868282 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ERBB2 NM_004448 exon8 c.A1003G p.S335G AAGTGCAGCAAGC . 89.0 4.0 92.0 0.0 . 429 . . Atlas-SNP ATP6V0A1 535 hgsc.bcm.edu hg19 17 40635054 40635054 + Splice_Site SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP6V0A1 NM_001130021 exon9 c.717-2A>G . TATTCCAGGTTCC . 80.0 4.0 67.0 0.0 . 67 . . Atlas-SNP ADAM11 4185 hgsc.bcm.edu hg19 17 42854589 42854589 + Silent SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADAM11 NM_002390 exon21 c.G1737C p.G579G GCGTGGGAGCTGT . 69.0 19.0 68.0 0.0 . 118 . . Atlas-SNP KANSL1 284058 hgsc.bcm.edu hg19 17 44109416 44109416 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001193466 exon14 c.A3087G p.E1029E TACCTGTTCATCC . 79.0 4.0 82.0 0.0 . . . . Atlas-SNP PHB 5245 hgsc.bcm.edu hg19 17 47486764 47486764 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHB NM_002634 exon4 c.A322G p.T108A TGCTGGTGAAGAT . 97.0 5.0 60.0 0.0 . 25 . . Atlas-SNP PHB 5245 hgsc.bcm.edu hg19 17 47489105 47489105 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHB NM_002634 exon3 c.A185G p.Q62R GGTTTCTGTACCC . 89.0 26.0 84.0 0.0 . 25 . . Atlas-SNP ACSF2 80221 hgsc.bcm.edu hg19 17 48541615 48541615 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ACSF2 NM_025149 exon10 c.T1175C p.I392T AGTTGATCCGAGC . 131.0 6.0 93.0 0.0 . 46 . . Atlas-SNP MYCBPAP 84073 hgsc.bcm.edu hg19 17 48598485 48598485 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYCBPAP NM_032133 exon8 c.A1060G p.R354G GCCCAGAGGGACG . 57.0 4.0 51.0 0.0 . 135 . . Atlas-SNP ANKFN1 162282 hgsc.bcm.edu hg19 17 54428175 54428175 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKFN1 NM_153228 exon4 c.T246C p.C82C TCTCTGTCAGTCA . 106.0 5.0 102.0 0.0 . 115 . . Atlas-SNP OR4D2 124538 hgsc.bcm.edu hg19 17 56247313 56247313 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OR4D2 NM_001004707 exon1 c.T297C p.G99G CATGGGTCAGATC . 100.0 4.0 46.0 0.0 . 48 . . Atlas-SNP MED13 9969 hgsc.bcm.edu hg19 17 60028243 60028243 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MED13 NM_005121 exon28 c.T6234C p.P2078P CCAGTCAGGTAAT . 84.0 4.0 66.0 0.0 . 181 . . Atlas-SNP KPNA2 3838 hgsc.bcm.edu hg19 17 66038453 66038453 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KPNA2 NM_002266 exon5 c.T555C p.A185A CTGGGCTCTAGGA . 71.0 4.0 62.0 0.0 . 55 . . Atlas-SNP ABCA6 23460 hgsc.bcm.edu hg19 17 67092459 67092459 + Silent SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCA6 NM_080284 exon25 c.C3330T p.V1110V GAAGAAGACAAGA . 104.0 5.0 64.0 0.0 . 210 . . Atlas-SNP KIF19 124602 hgsc.bcm.edu hg19 17 72350520 72350520 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIF19 NM_153209 exon18 c.A2528G p.E843G CCAGTGAGGACAA . 60.0 5.0 94.0 0.0 . 102 . . Atlas-SNP C17orf77 146723 hgsc.bcm.edu hg19 17 72588775 72588775 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C17orf77 NM_152460 exon3 c.T590C p.L197P CAGGACTCACACC . 124.0 6.0 103.0 0.0 . 31 . . Atlas-SNP SPHK1 8877 hgsc.bcm.edu hg19 17 74383312 74383312 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPHK1 NM_182965 exon6 c.A1058G p.H353R ACTCGCACCTGGG . 132.0 6.0 62.0 0.0 . 24 . . Atlas-SNP RNF213 57674 hgsc.bcm.edu hg19 17 78261894 78261894 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RNF213 NM_001256071 exon4 c.A542G p.E181G TGGGAGAGGCAGG . 104.0 5.0 69.0 0.0 . 766 . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 8085685 8085685 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTPRM NM_001105244 exon10 c.T1568C p.V523A AAGCAGTCAGTTC . 147.0 6.0 106.0 0.0 . 185 . . Atlas-SNP DSC3 1825 hgsc.bcm.edu hg19 18 28604328 28604328 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DSC3 NM_024423 exon6 c.A762G p.E254E ACTACTTTCCAAA . 53.0 5.0 40.0 0.0 . 225 . . Atlas-SNP TRAPPC8 22878 hgsc.bcm.edu hg19 18 29432603 29432603 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRAPPC8 NM_014939 exon23 c.A3457G p.K1153E TTCCCTTCTCCCT . 69.0 4.0 68.0 0.0 . 126 . . Atlas-SNP MBD1 4152 hgsc.bcm.edu hg19 18 47801526 47801526 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MBD1 NM_001204137 exon10 c.A957G p.P319P CTGTGATGGGGGT . 95.0 36.0 85.0 0.0 . 228 . . Atlas-SNP NEDD4L 23327 hgsc.bcm.edu hg19 18 56018257 56018257 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NEDD4L NM_001144967 exon18 c.G1688A p.R563Q ATGGCCGAACGTT . 96.0 7.0 60.0 0.0 . 126 . . Atlas-SNP TMX3 54495 hgsc.bcm.edu hg19 18 66377317 66377317 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMX3 NM_019022 exon4 c.A206G p.E69G TTCATCTCAAGAC . 114.0 5.0 83.0 0.0 . 44 . . Atlas-SNP PTPRS 5802 hgsc.bcm.edu hg19 19 5258114 5258114 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTPRS NM_002850 exon8 c.A620G p.E207G GTTTCCTCACTGC . 137.0 6.0 149.0 0.0 . 169 . . Atlas-SNP TRIP10 9322 hgsc.bcm.edu hg19 19 6751209 6751209 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRIP10 NM_004240 exon14 c.T1625C p.V542A TCCGAGTCACGCT . 134.0 6.0 110.0 0.0 . 104 . . Atlas-SNP INSR 3643 hgsc.bcm.edu hg19 19 7152932 7152932 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . INSR NM_000208 exon10 c.A2036G p.K679R GGCAGCTTCAGCC . 67.0 4.0 58.0 0.0 . 265 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9089471 9089471 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MUC16 NM_024690 exon1 c.C2344G p.P782A TTTCAGGACTTGT . 158.0 66.0 111.0 0.0 . 4315 . . Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11099991 11099991 + Splice_Site SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMARCA4 NM_003072 exon7 c.1119-2A>G . GCTCCCAGGCTGC . 123.0 5.0 103.0 0.0 . 502 . . Atlas-SNP ZNF44 51710 hgsc.bcm.edu hg19 19 12383437 12383437 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF44 NM_001164276 exon5 c.T1777C p.S593P GGAAAGAGGGCCA . 76.0 4.0 59.0 0.0 . 55 . . Atlas-SNP CACNA1A 773 hgsc.bcm.edu hg19 19 13394203 13394203 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CACNA1A NM_001127221 exon22 c.C3703T p.R1235C ACAGGCGGCGAAG . 236.0 76.0 179.0 0.0 . 715 . . Atlas-SNP CC2D1A 54862 hgsc.bcm.edu hg19 19 14023137 14023137 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CC2D1A NM_017721 exon3 c.T198C p.G66G GCCAGGTCCCTTG . 81.0 4.0 62.0 0.0 . 67 . . Atlas-SNP OR10H2 26538 hgsc.bcm.edu hg19 19 15838973 15838973 + Silent SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 OR10H2,NS,carcinoma,0,1 OR10H2 NM_013939 exon1 c.G120A p.L40L GCTGCTGGGCAAC . 363.0 0.0 277.0 0.0 . 59 . . Atlas-SNP EPS15L1 58513 hgsc.bcm.edu hg19 19 16524615 16524615 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EPS15L1 NM_021235 exon13 c.A1235G p.E412G ATTGCCTCTTCCT . 212.0 9.0 214.0 0.0 . 81 . . Atlas-SNP FCHO1 23149 hgsc.bcm.edu hg19 19 17897403 17897403 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FCHO1 NM_001161358 exon26 c.T2447C p.L816P AGCGGCTCACTTG . 89.0 4.0 49.0 0.0 . 69 . . Atlas-SNP ZNF675 171392 hgsc.bcm.edu hg19 19 23837367 23837367 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF675 NM_138330 exon4 c.A368G p.K123R TGCAACTTACATT . 123.0 5.0 102.0 0.0 . 88 . . Atlas-SNP C19orf55 148137 hgsc.bcm.edu hg19 19 36252918 36252918 + Splice_Site SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C19orf55 NM_001039887 exon4 c.312-2A>G . GTTCACAGGTATA . 79.0 5.0 70.0 0.0 . 39 . . Atlas-SNP C19orf55 148137 hgsc.bcm.edu hg19 19 36258938 36258938 + Splice_Site SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,11 C19orf55 NM_001039887 exon9 c.1190+1G>A . TGCCCAGGGCCGC . 26.0 4.0 16.0 0.0 . 39 . . Atlas-SNP ZNF607 84775 hgsc.bcm.edu hg19 19 38190282 38190282 + Silent SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF607 NM_032689 exon5 c.G750A p.E250E GGGCTTCTCACCA . 116.0 5.0 83.0 0.0 . 82 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38384513 38384513 + Silent SNP T T A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WDR87 NM_031951 exon4 c.A1713T p.T571T AAAGGATGTGATG . 79.0 4.0 61.0 0.0 . 191 . . Atlas-SNP ZNF780A 284323 hgsc.bcm.edu hg19 19 40589113 40589113 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF780A NM_001142579 exon5 c.A89G p.D30G GAGAAGTCAATGG . 135.0 7.0 104.0 0.0 . 156 . . Atlas-SNP EGLN2 112398 hgsc.bcm.edu hg19 19 41306911 41306911 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EGLN2 NM_053046 exon2 c.A434G p.E145G AGGCAGAGCGGGA . 203.0 11.0 179.0 0.0 . 31 . . Atlas-SNP CXCL17 284340 hgsc.bcm.edu hg19 19 42937936 42937936 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CXCL17 NM_198477 exon2 c.A152G p.E51G TTGCACTCACATT . 111.0 5.0 99.0 0.0 . 8 . . Atlas-SNP ZNF230 7773 hgsc.bcm.edu hg19 19 44511161 44511161 + Splice_Site SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF230 . . . . TTTTCCAGGCACA . 121.0 6.0 125.0 0.0 . 44 . . Atlas-SNP ZNF284 342909 hgsc.bcm.edu hg19 19 44590888 44590888 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF284 NM_001037813 exon5 c.A1257G p.R419R TCAGAGAGCCTAT . 117.0 6.0 119.0 0.0 . 38 . . Atlas-SNP PVRL2 5819 hgsc.bcm.edu hg19 19 45375206 45375206 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PVRL2 NM_002856 exon3 c.C575T p.A192V CACCTGCCCGGAT . 112.0 15.0 102.0 0.0 . 58 . . Atlas-SNP TPRX1 284355 hgsc.bcm.edu hg19 19 48305864 48305864 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TPRX1 NM_198479 exon2 c.T404C p.I135T CCTGGGATTGGGG . 136.0 6.0 108.0 0.0 . 46 . . Atlas-SNP LIG1 3978 hgsc.bcm.edu hg19 19 48665558 48665558 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LIG1 NM_000234 exon3 c.A68G p.E23G GATGCCTCCTTCT . 102.0 5.0 90.0 0.0 . 151 . . Atlas-SNP SCAF1 58506 hgsc.bcm.edu hg19 19 50148321 50148321 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCAF1 NM_021228 exon2 c.A38G p.E13G CAGAGGAGTCGGG . 85.0 6.0 60.0 0.0 . 78 . . Atlas-SNP CEACAM18 729767 hgsc.bcm.edu hg19 19 51981947 51981947 + Missense_Mutation SNP G G C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 CEACAM18_ENST00000451626,NS,chondrosarcoma,0,1 CEACAM18 NM_001080405 exon2 c.G234C p.M78I CCTCATGGGTAAG . 72.0 0.0 40.0 0.0 . 96 . . Atlas-SNP KIR2DL3 3804 hgsc.bcm.edu hg19 19 55263169 55263169 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIR2DL3 NM_015868 exon6 c.T784C p.F262L CTCCTCTTCTTTC . 116.0 5.0 48.0 0.0 . 68 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55508725 55508725 + Missense_Mutation SNP C C A rs61735074 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NLRP2 NM_017852 exon12 c.C2920A p.L974I GAAGACCTCTGCT . 316.0 156.0 232.0 0.0 . 161 . C|0.981;G|0.019 Atlas-SNP ZNF446 55663 hgsc.bcm.edu hg19 19 58989035 58989035 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF446 NM_017908 exon3 c.T374C p.L125P AGGTGCTCCCTGC . 135.0 6.0 106.0 0.0 . 22 . . Atlas-SNP C20orf194 25943 hgsc.bcm.edu hg19 20 3285095 3285095 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C20orf194 NM_001009984 exon21 c.T1774C p.Y592H CATCATAGAAGGA . 98.0 4.0 69.0 0.0 . 83 . . Atlas-SNP RASSF2 9770 hgsc.bcm.edu hg19 20 4776514 4776514 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RASSF2 NM_014737 exon5 c.A234G p.R78R AGGGGGTCGAATG . 121.0 5.0 73.0 0.0 . 75 . . Atlas-SNP ANKEF1 63926 hgsc.bcm.edu hg19 20 10032309 10032309 + Splice_Site SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_022096 exon8 c.1644-2A>G . TTTTACAGAGCTA . 98.0 6.0 87.0 0.0 . . . . Atlas-SNP ZNF133 7692 hgsc.bcm.edu hg19 20 18296753 18296753 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF133 NM_001083330 exon4 c.A1255G p.S419G AGCTTCAGCCAGA . 81.0 4.0 70.0 0.0 . 63 . . Atlas-SNP NAPB 63908 hgsc.bcm.edu hg19 20 23383704 23383704 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NAPB NM_022080 exon2 c.A104G p.N35S CTTGTGTTTCCTC . 92.0 4.0 68.0 0.0 . 22 . . Atlas-SNP CBFA2T2 9139 hgsc.bcm.edu hg19 20 32212691 32212691 + Missense_Mutation SNP G G T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CBFA2T2 NM_005093 exon7 c.G841T p.G281W AATCCCGGGGGCC . 151.0 7.0 106.0 0.0 . 93 . . Atlas-SNP GSS 2937 hgsc.bcm.edu hg19 20 33530430 33530430 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GSS NM_000178 exon5 c.A352G p.T118A ACACAGTCTGTGG . 116.0 5.0 79.0 0.0 . 33 . . Atlas-SNP CDH22 64405 hgsc.bcm.edu hg19 20 44839091 44839091 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDH22 NM_021248 exon7 c.G1141A p.V381M CGCGCACGATCGC . 128.0 58.0 89.0 0.0 . 112 . . Atlas-SNP TSHZ2 128553 hgsc.bcm.edu hg19 20 51872669 51872669 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TSHZ2 NM_173485 exon2 c.T2672C p.L891P CGGGACTCTCAAT . 98.0 4.0 92.0 0.0 . 209 . . Atlas-SNP ZNF217 7764 hgsc.bcm.edu hg19 20 52193705 52193705 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF217 NM_006526 exon3 c.T1598C p.V533A TTCTTGACTTCAG . 93.0 4.0 75.0 0.0 . 227 . . Atlas-SNP OSBPL2 9885 hgsc.bcm.edu hg19 20 60861769 60861769 + Splice_Site SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OSBPL2 NM_144498 exon11 c.1125+2T>C . CCCAGGTCTGTGT . 76.0 4.0 58.0 0.0 . 51 . . Atlas-SNP PRPF6 24148 hgsc.bcm.edu hg19 20 62614445 62614445 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PRPF6 NM_012469 exon2 c.T117C p.D39D CCGTGATGCAAAT . 117.0 5.0 89.0 0.0 . 88 . . Atlas-SNP APP 351 hgsc.bcm.edu hg19 21 27354754 27354754 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 APP,NS,carcinoma,0,1 APP NM_000484 exon9 c.A1127G p.D376G TACTTGTCAACGG . 94.0 4.0 91.0 0.0 . 90 . . Atlas-SNP IGSF5 150084 hgsc.bcm.edu hg19 21 41151128 41151128 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IGSF5 NM_001080444 exon5 c.T830C p.L277P TGCTTCTGACGCC . 94.0 4.0 103.0 0.0 . 62 . . Atlas-SNP C2CD2 25966 hgsc.bcm.edu hg19 21 43362260 43362260 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C2CD2 NM_015500 exon2 c.A374G p.E125G ACCTTCTCCTCCG . 111.0 6.0 161.0 0.0 . 47 . . Atlas-SNP WDR4 10785 hgsc.bcm.edu hg19 21 44282502 44282502 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WDR4 NM_018669 exon5 c.T456C p.A152A ACTCACAGCCTGC . 43.0 4.0 41.0 0.0 . 35 . . Atlas-SNP NDUFV3 4731 hgsc.bcm.edu hg19 21 44323563 44323563 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NDUFV3 NM_021075 exon3 c.A441G p.K147K TCGGAAAGTGACG . 91.0 4.0 109.0 0.0 . 23 . . Atlas-SNP COL18A1 80781 hgsc.bcm.edu hg19 21 46899863 46899863 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL18A1 NM_030582 exon9 c.T1836C p.G612G CGTAGGTCCCAAG . 60.0 4.0 67.0 0.0 . 129 . . Atlas-SNP MCM3AP 8888 hgsc.bcm.edu hg19 21 47685325 47685325 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MCM3AP NM_003906 exon12 c.A3144G p.A1048A GGTCAGTGCCAGG . 66.0 4.0 78.0 0.0 . 146 . . Atlas-SNP CLTCL1 8218 hgsc.bcm.edu hg19 22 19217362 19217362 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CLTCL1 NM_001835 exon11 c.A1781G p.Q594R CTGACCTGGGGTG . 93.0 4.0 66.0 0.0 . 115 . . Atlas-SNP ARVCF 421 hgsc.bcm.edu hg19 22 19959474 19959474 + Silent SNP G G T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARVCF NM_001670 exon18 c.C2716A p.R906R CCCTCCGGTCCAC . 88.0 6.0 47.0 0.0 . 54 . . Atlas-SNP AIFM3 150209 hgsc.bcm.edu hg19 22 21328152 21328152 + Silent SNP G G T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AIFM3 NM_001146288 exon4 c.G369T p.V123V CCTGGTGAAAGGT . 113.0 34.0 63.0 0.0 . 49 . . Atlas-SNP ZNF280B 140883 hgsc.bcm.edu hg19 22 22842944 22842944 + Silent SNP T T A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF280B NM_080764 exon4 c.A780T p.A260A TGTTTTTGCCAAT . 100.0 17.0 81.0 0.0 . 67 . . Atlas-SNP SPECC1L 23384 hgsc.bcm.edu hg19 22 24726381 24726381 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPECC1L NM_001145468 exon7 c.A2378G p.E793G AATTGGAGGAAAT . 82.0 4.0 67.0 0.0 . 85 . . Atlas-SNP MTMR3 8897 hgsc.bcm.edu hg19 22 30387534 30387534 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MTMR3 NM_021090 exon7 c.A335G p.K112R GGCTGAAGAGACT . 79.0 5.0 68.0 0.0 . 106 . . Atlas-SNP MORC2 22880 hgsc.bcm.edu hg19 22 31334114 31334114 + Silent SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MORC2 NM_014941 exon14 c.C966T p.I322I GTTGTAGATGAAC . 155.0 7.0 137.0 0.0 . 78 . . Atlas-SNP C22orf28 51493 hgsc.bcm.edu hg19 22 32789991 32789991 + Splice_Site SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C22orf28 NM_014306 exon11 c.1180-2A>G . GTGAGCTGAGGAT . 75.0 4.0 56.0 0.0 . 43 . . Atlas-SNP BPIFC 254240 hgsc.bcm.edu hg19 22 32811918 32811918 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_174932 exon14 c.A1385G p.D462G TCAATATCTGAAT . 99.0 4.0 68.0 0.0 . . . . Atlas-SNP SSTR3 6753 hgsc.bcm.edu hg19 22 37602587 37602587 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SSTR3 NM_001051 exon2 c.A1256G p.X419W AGGCCCTACAGGT . 60.0 5.0 58.0 0.0 . 42 . . Atlas-SNP CYTH4 27128 hgsc.bcm.edu hg19 22 37709517 37709517 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CYTH4 NM_013385 exon13 c.T1150C p.S384P CTGGTCTCTACTC . 146.0 6.0 129.0 0.0 . 51 . . Atlas-SNP RANGAP1 5905 hgsc.bcm.edu hg19 22 41645369 41645369 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RANGAP1 NM_002883 exon15 c.G1659T p.K553N AAGGGCCTTGGGG . 99.0 17.0 91.0 0.0 . 47 . . Atlas-SNP POLDIP3 84271 hgsc.bcm.edu hg19 22 42991558 42991558 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . POLDIP3 NM_032311 exon6 c.T876C p.T292T CTCCTCAGTGACT . 170.0 7.0 146.0 0.0 . 58 . . Atlas-SNP PARVG 64098 hgsc.bcm.edu hg19 22 44587943 44587943 + Silent SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 PARVG,NS,carcinoma,0,1 PARVG NM_001137606 exon8 c.T519C p.G173G AAGTGGTCTGAAG . 82.0 4.0 53.0 0.0 . 41 . . Atlas-SNP CELSR1 9620 hgsc.bcm.edu hg19 22 46777807 46777807 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CELSR1 NM_014246 exon21 c.A7024G p.I2342V AAATGATGACCAG . 88.0 4.0 80.0 0.0 . 242 . . Atlas-SNP BRD1 23774 hgsc.bcm.edu hg19 22 50187702 50187702 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 BRD1_ENST00000342989,NS,carcinoma,0,2 BRD1 NM_014577 exon6 c.G2339T p.G780V TCCGGCCCCAGCG . 58.0 43.0 67.0 0.0 . 144 . . Atlas-SNP BRD1 23774 hgsc.bcm.edu hg19 22 50187703 50187703 + Missense_Mutation SNP C C A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BRD1 NM_014577 exon6 c.G2338T p.G780W CCGGCCCCAGCGC . 57.0 42.0 67.0 0.0 . 144 . . Atlas-SNP MAPK12 6300 hgsc.bcm.edu hg19 22 50695539 50695539 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAPK12 NM_002969 exon4 c.T398C p.L133P TACACGAGGAACT . 71.0 4.0 98.0 0.0 . 43 . . Atlas-SNP MIOX 55586 hgsc.bcm.edu hg19 22 50928027 50928027 + Missense_Mutation SNP T T A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 MIOX,colon,carcinoma,0,1 MIOX NM_017584 exon9 c.T703A p.C235S CAGCTGTGCAGCC . 128.0 0.0 124.0 0.0 . 21 . . Atlas-SNP SHROOM2 357 hgsc.bcm.edu hg19 X 9900715 9900715 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SHROOM2 NM_001649 exon6 c.T3392C p.V1131A CCACTGTCTGTGA . 88.0 4.0 70.0 0.0 . 139 . . Atlas-SNP CDKL5 6792 hgsc.bcm.edu hg19 X 18593549 18593549 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDKL5 NM_003159 exon5 c.A221G p.E74G TTGTGGAGTTGAA . 97.0 5.0 105.0 0.0 . 124 . . Atlas-SNP PTCHD1 139411 hgsc.bcm.edu hg19 X 23411677 23411677 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTCHD1 NM_173495 exon3 c.T2042C p.V681A TCATCGTCTTCAA . 113.0 5.0 74.0 0.0 . 213 . . Atlas-SNP POLA1 5422 hgsc.bcm.edu hg19 X 24741325 24741325 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . POLA1 NM_016937 exon11 c.A1123G p.S375G CATGTGAGCTGTT . 178.0 8.0 139.0 0.0 . 117 . . Atlas-SNP POLA1 5422 hgsc.bcm.edu hg19 X 24844595 24844595 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . POLA1 NM_016937 exon32 c.C3595T p.Q1199X CAGCTGCAGAAAC . 73.0 4.0 77.0 0.0 . 117 . . Atlas-SNP XK 7504 hgsc.bcm.edu hg19 X 37553772 37553772 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . XK NM_021083 exon2 c.T479C p.V160A TAAGTGTCATGCA . 115.0 5.0 100.0 0.0 . 48 . . Atlas-SNP ZNF674 641339 hgsc.bcm.edu hg19 X 46401522 46401522 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF674 NM_001146291 exon3 c.A1G p.M1V TGGCCATCTTGTT . 78.0 4.0 38.0 0.0 . 3 . . Atlas-SNP ZNF41 7592 hgsc.bcm.edu hg19 X 47307869 47307869 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF41 NM_007130 exon5 c.A1300G p.T434A CTCCCGTGTGGAT . 63.0 4.0 54.0 0.0 . 71 . . Atlas-SNP IQSEC2 23096 hgsc.bcm.edu hg19 X 53264288 53264288 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IQSEC2 NM_001111125 exon15 c.A3580G p.S1194G TCTGGCTCTTGTA . 68.0 4.0 47.0 0.0 . 195 . . Atlas-SNP WNK3 65267 hgsc.bcm.edu hg19 X 54263832 54263832 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WNK3 NM_020922 exon20 c.T4167C p.N1389N TTTTGGATTTTGT . 41.0 4.0 49.0 0.0 . 218 . . Atlas-SNP USP51 158880 hgsc.bcm.edu hg19 X 55514365 55514365 + Silent SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP51 NM_201286 exon2 c.T1008C p.C336C TGTCTCACAGGTT . 114.0 5.0 98.0 0.0 . 71 . . Atlas-SNP GPR174 84636 hgsc.bcm.edu hg19 X 78427231 78427231 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPR174 NM_032553 exon1 c.T727C p.F243L ATTTGCTTTGCAC . 86.0 4.0 101.0 0.0 . 79 . . Atlas-SNP CHM 1121 hgsc.bcm.edu hg19 X 85282510 85282510 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CHM NM_001145414 exon2 c.T101C p.V34A TGCAGAACTCTCC . 124.0 5.0 92.0 0.0 . 57 . . Atlas-SNP TAF7L 54457 hgsc.bcm.edu hg19 X 100524209 100524209 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TAF7L NM_024885 exon13 c.A1361G p.E454G AACTGTTCCTGTA . 100.0 4.0 70.0 0.0 . 64 . . Atlas-SNP TCEAL6 158931 hgsc.bcm.edu hg19 X 101395774 101395774 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TCEAL6 NM_001006938 exon3 c.A530G p.D177G CCGTTGTCCCCTT . 163.0 11.0 62.0 0.0 . 27 . . Atlas-SNP TCEAL6 158931 hgsc.bcm.edu hg19 X 101395778 101395778 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TCEAL6 NM_001006938 exon3 c.G526A p.G176R TGTCCCCTTGGGC . 155.0 17.0 60.0 0.0 . 27 . . Atlas-SNP COL4A6 1288 hgsc.bcm.edu hg19 X 107448673 107448673 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL4A6 NM_001847 exon11 c.T686C p.V229A ACCTTGACTCCTT . 99.0 5.0 59.0 0.0 . 270 . . Atlas-SNP RBMXL3 139804 hgsc.bcm.edu hg19 X 114424452 114424452 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RBMXL3 NM_001145346 exon1 c.C448T p.R150C AGGAAGCGCGGGC . 10.0 8.0 14.0 0.0 . 83 . . Atlas-SNP GRIA3 2892 hgsc.bcm.edu hg19 X 122336608 122336608 + Missense_Mutation SNP C C G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GRIA3 NM_001256743 exon3 c.C389G p.A130G GGCCCGCCAAAAC . 82.0 5.0 51.0 0.0 . 386 . . Atlas-SNP GPC4 2239 hgsc.bcm.edu hg19 X 132438856 132438856 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPC4 NM_001448 exon7 c.A1189G p.K397E ATTTCTTGGCCTG . 84.0 4.0 76.0 0.0 . 58 . . Atlas-SNP ZNF449 203523 hgsc.bcm.edu hg19 X 134481371 134481371 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF449 NM_152695 exon2 c.A328G p.R110G TTACAGAGAGAAC . 76.0 4.0 60.0 0.0 . 68 . . Atlas-SNP HMGB3 3149 hgsc.bcm.edu hg19 X 150155773 150155773 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HMGB3 NM_005342 exon4 c.A463G p.K155E TATGAGAAGGTAA . 83.0 4.0 54.0 0.0 . 27 . . Atlas-SNP F8 2157 hgsc.bcm.edu hg19 X 154088732 154088732 + Missense_Mutation SNP A A G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . F8 NM_000132 exon25 c.T6875C p.L2292P AAAAAGAGAGTCC . 77.0 4.0 72.0 0.0 . 646 . . Atlas-SNP F8 2157 hgsc.bcm.edu hg19 X 154157276 154157276 + Missense_Mutation SNP C C T novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . F8 NM_000132 exon14 c.G4789A p.E1597K ACTCTTCTTTTGG . 136.0 7.0 116.0 0.0 . 646 . . Atlas-SNP ATP8 0 hgsc.bcm.edu hg19 MT 8430 8430 + Missense_Mutation SNP T T C novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . ENST00000361851 exon1 c.T65C p.L22P TATTCCTCATCAC . 7.0 7.0 69.0 0.0 . . . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13595 13595 + Missense_Mutation SNP G G A novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . ENST00000361567 exon1 c.G1259A p.S420N TGACAAGCGCCTA . 17.0 12.0 92.0 0.0 . . . . Atlas-SNP SMC1B 27127 hgsc.bcm.edu hg19 22 45789663 45789663 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMC1B NM_148674 exon9 c.1397delC p.T466fs . . 183.0 14.0 122.0 0.0 . 215 . . Atlas-INDEL OR8A1 390275 hgsc.bcm.edu hg19 11 124440280 124440280 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OR8A1 NM_001005194 exon1 c.315delG p.E105fs . . 190.0 13.0 123.0 0.0 . 61 . . Atlas-INDEL GZMM 3004 hgsc.bcm.edu hg19 19 549133 549133 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GZMM NM_005317 exon4 c.559delT p.S187fs . . 154.0 10.0 137.0 0.0 . 11 . . Atlas-INDEL OR7C2 26658 hgsc.bcm.edu hg19 19 15052711 15052711 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OR7C2 NM_012377 exon1 c.410delA p.N137fs . . 202.0 14.0 190.0 0.0 . 50 . . Atlas-INDEL ARNT 405 hgsc.bcm.edu hg19 1 150789283 150789283 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARNT NM_001668 exon18 c.1784delG p.R595fs . . 213.0 14.0 123.0 0.0 . 68 . . Atlas-INDEL PPP3CB 5532 hgsc.bcm.edu hg19 10 75230481 75230481 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 PPP3CB,caecum,carcinoma,0,1 PPP3CB NM_001142354 exon8 c.947delC p.S316fs . . 165.0 10.0 127.0 0.0 . 68 . . Atlas-INDEL SF3A3 10946 hgsc.bcm.edu hg19 1 38442595 38442595 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SF3A3 NM_006802 exon12 c.967delC p.L323X . . 209.0 14.0 170.0 0.0 . 37 . . Atlas-INDEL RXRB 6257 hgsc.bcm.edu hg19 6 33166144 33166144 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RXRB NM_021976 exon3 c.582delT p.P194fs . . 137.0 11.0 101.0 0.0 . 34 . . Atlas-INDEL FBXO28 23219 hgsc.bcm.edu hg19 1 224345442 224345442 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FBXO28 NM_015176 exon5 c.1100delG p.R367fs . . 124.0 10.0 47.0 0.0 . 34 . . Atlas-INDEL ADAMTS8 11095 hgsc.bcm.edu hg19 11 130297563 130297563 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADAMTS8 NM_007037 exon1 c.620delC p.A207fs . . 166.0 10.0 83.0 0.0 . 172 . . Atlas-INDEL NAPSA 9476 hgsc.bcm.edu hg19 19 50868809 50868809 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NAPSA NM_004851 exon1 c.71delC p.A24fs . . 170.0 13.0 71.0 0.0 . 38 . . Atlas-INDEL SUPT7L 9913 hgsc.bcm.edu hg19 2 27883855 27883855 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SUPT7L NM_014860 exon3 c.416delA p.Y139fs . . 157.0 10.0 175.0 0.0 . 36 . . Atlas-INDEL GLB1L3 112937 hgsc.bcm.edu hg19 11 134152001 134152001 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GLB1L3 NM_001080407 exon5 c.513delC p.L171fs . . 202.0 14.0 142.0 0.0 . 102 . . Atlas-INDEL RCOR2 283248 hgsc.bcm.edu hg19 11 63679557 63679557 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RCOR2 NM_173587 exon12 c.1353delG p.P451fs . . 153.0 10.0 142.0 0.0 . 43 . . Atlas-INDEL MRPL16 54948 hgsc.bcm.edu hg19 11 59575183 59575183 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MRPL16 NM_017840 exon3 c.262delG p.A88fs . . 216.0 13.0 170.0 0.0 . 25 . . Atlas-INDEL DNM3 26052 hgsc.bcm.edu hg19 1 172356459 172356459 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNM3 NM_015569 exon19 c.2244delA p.A748fs . . 143.0 12.0 100.0 0.0 . 85 . . Atlas-INDEL PCDHB5 26167 hgsc.bcm.edu hg19 5 140515047 140515047 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PCDHB5 NM_015669 exon1 c.30delG p.Q10fs . . 229.0 14.0 200.0 0.0 . 184 . . Atlas-INDEL RLTPR 146206 hgsc.bcm.edu hg19 16 67688777 67688777 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RLTPR NM_001013838 exon32 c.3678delC p.S1226fs . . 141.0 13.0 121.0 0.0 . 124 . . Atlas-INDEL KIF15 56992 hgsc.bcm.edu hg19 3 44882704 44882704 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIF15 NM_020242 exon29 c.3558delC p.V1186fs . . 127.0 11.0 94.0 0.0 . 103 . . Atlas-INDEL UGDH 7358 hgsc.bcm.edu hg19 4 39515764 39515764 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UGDH NM_001184700 exon3 c.204delT p.N68fs . . 155.0 10.0 134.0 0.0 . 52 . . Atlas-INDEL EHBP1L1 254102 hgsc.bcm.edu hg19 11 65351025 65351025 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EHBP1L1 NM_001099409 exon9 c.2881delG p.V961fs . . 190.0 13.0 115.0 0.0 . 64 . . Atlas-INDEL ROS1 6098 hgsc.bcm.edu hg19 6 117683915 117683915 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ROS1 NM_002944 exon21 c.3233delT p.V1078fs . . 165.0 10.0 131.0 0.0 . 728 . . Atlas-INDEL RPF1 80135 hgsc.bcm.edu hg19 1 84945079 84945079 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RPF1 NM_025065 exon1 c.114delC p.N38fs . . 155.0 10.0 136.0 0.0 . 31 . . Atlas-INDEL MCHR2 84539 hgsc.bcm.edu hg19 6 100395834 100395834 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MCHR2 NM_001040179 exon3 c.197delC p.T66fs . . 184.0 13.0 149.0 0.0 . 97 . . Atlas-INDEL GLI3 2737 hgsc.bcm.edu hg19 7 42006102 42006102 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GLI3 NM_000168 exon15 c.2570delC p.A857fs . . 154.0 10.0 145.0 0.0 . 312 . . Atlas-INDEL AIM1 202 hgsc.bcm.edu hg19 6 106967727 106967727 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AIM1 NM_001624 exon2 c.1419delT p.P473fs . . 183.0 11.0 134.0 0.0 . 161 . . Atlas-INDEL ERCC1 2067 hgsc.bcm.edu hg19 19 45916842 45916842 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ERCC1 NM_202001 exon8 c.937delG p.E313fs . . 166.0 10.0 132.0 0.0 . 46 . . Atlas-INDEL DMBX1 127343 hgsc.bcm.edu hg19 1 46976722 46976722 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DMBX1 NM_147192 exon3 c.463delG p.A155fs . . 198.0 14.0 165.0 0.0 . 50 . . Atlas-INDEL SMYD5 10322 hgsc.bcm.edu hg19 2 73452036 73452036 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMYD5 NM_006062 exon11 c.982delG p.E328fs . . 133.0 11.0 131.0 0.0 . 58 . . Atlas-INDEL USP13 8975 hgsc.bcm.edu hg19 3 179501906 179501906 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP13 NM_003940 exon21 c.2568delC p.Y856fs . . 166.0 10.0 179.0 0.0 . 117 . . Atlas-INDEL MAPK11 5600 hgsc.bcm.edu hg19 22 50704089 50704089 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAPK11 NM_002751 exon10 c.764delC p.A255fs . . 148.0 10.0 135.0 0.0 . 23 . . Atlas-INDEL ARHGEF12 23365 hgsc.bcm.edu hg19 11 120346091 120346091 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARHGEF12 NM_015313 exon33 c.3151delC p.Q1051fs . . 228.0 14.0 126.0 0.0 . 133 . . Atlas-INDEL ADORA1 134 hgsc.bcm.edu hg19 1 203134406 203134406 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADORA1 NM_001048230 exon3 c.358delA p.T120fs . . 146.0 10.0 65.0 0.0 . 62 . . Atlas-INDEL SNX24 28966 hgsc.bcm.edu hg19 5 122272475 122272475 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SNX24 NM_014035 exon2 c.106delG p.E36fs . . 180.0 13.0 142.0 0.0 . 14 . . Atlas-INDEL SLC25A13 10165 hgsc.bcm.edu hg19 7 95906607 95906607 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC25A13 NM_001160210 exon3 c.114delT p.N38fs . . 151.0 10.0 76.0 0.0 . 131 . . Atlas-INDEL FZD6 8323 hgsc.bcm.edu hg19 8 104330820 104330820 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FZD6 NM_003506 exon3 c.179delA p.H60fs . . 125.0 11.0 87.0 0.0 . 61 . . Atlas-INDEL KIF15 56992 hgsc.bcm.edu hg19 3 44879844 44879844 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 KIF15,NS,carcinoma,0,1 KIF15 NM_020242 exon27 c.3248delC p.S1083fs . . 159.0 10.0 153.0 0.0 . 103 . . Atlas-INDEL GPR63 81491 hgsc.bcm.edu hg19 6 97246738 97246738 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPR63 NM_030784 exon2 c.871delC p.L291fs . . 124.0 10.0 102.0 0.0 . 60 . . Atlas-INDEL SCG5 6447 hgsc.bcm.edu hg19 15 32936003 32936003 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCG5 NM_003020 exon2 c.209delG p.G70fs . . 152.0 11.0 141.0 0.0 . 13 . . Atlas-INDEL TENM1 10178 hgsc.bcm.edu hg19 X 123697625 123697625 + Splice_Site DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001163278 exon14 c.2264-2T>- . . . 193.0 15.0 144.0 0.0 . . . . Atlas-INDEL CAMSAP3 57662 hgsc.bcm.edu hg19 19 7672746 7672746 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CAMSAP3 NM_001080429 exon6 c.693delA p.K231fs . . 306.0 19.0 253.0 0.0 . 131 . . Atlas-INDEL FAM186A 121006 hgsc.bcm.edu hg19 12 50747194 50747194 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FAM186A NM_001145475 exon4 c.3422delA p.Q1141fs . . 146.0 11.0 105.0 0.0 . 181 . . Atlas-INDEL PYROXD2 84795 hgsc.bcm.edu hg19 10 100152700 100152700 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PYROXD2 NM_032709 exon9 c.927delG p.K309fs . . 156.0 10.0 218.0 0.0 . 43 . . Atlas-INDEL KRCC1 51315 hgsc.bcm.edu hg19 2 88327573 88327573 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KRCC1 NM_016618 exon4 c.511delT p.S171fs . . 354.0 24.0 238.0 0.0 . 25 . . Atlas-INDEL OPN3 23596 hgsc.bcm.edu hg19 1 241757938 241757938 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OPN3 NM_014322 exon4 c.1002delT p.P334fs . . 175.0 11.0 115.0 0.0 . 28 . . Atlas-INDEL PDP1 54704 hgsc.bcm.edu hg19 8 94934597 94934597 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PDP1 NM_001161780 exon3 c.384delC p.G128fs . . 200.0 13.0 144.0 0.0 . 97 . . Atlas-INDEL C2orf71 388939 hgsc.bcm.edu hg19 2 29294038 29294038 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C2orf71 NM_001029883 exon1 c.3091delA p.S1031fs . . 232.0 14.0 213.0 0.0 . 146 . . Atlas-INDEL PIK3C3 5289 hgsc.bcm.edu hg19 18 39593452 39593452 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PIK3C3 NM_002647 exon11 c.1216delG p.E406fs . . 256.0 16.0 215.0 0.0 . 138 . . Atlas-INDEL GMPPA 29926 hgsc.bcm.edu hg19 2 220369963 220369963 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GMPPA NM_205847 exon8 c.633delA p.P211fs . . 165.0 11.0 144.0 0.0 . 50 . . Atlas-INDEL BCL11A 53335 hgsc.bcm.edu hg19 2 60688969 60688969 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BCL11A NM_022893 exon4 c.1079delT p.L360fs . . 191.0 13.0 141.0 0.0 . 298 . . Atlas-INDEL DNAH17 8632 hgsc.bcm.edu hg19 17 76482378 76482378 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNAH17 NM_173628 exon45 c.7030delA p.R2344fs . . 181.0 11.0 84.0 0.0 . 347 . . Atlas-INDEL MAP7D3 79649 hgsc.bcm.edu hg19 X 135314194 135314194 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAP7D3 NM_024597 exon8 c.923delA p.Q308fs . . 135.0 11.0 130.0 0.0 . 102 . . Atlas-INDEL ITGAM 3684 hgsc.bcm.edu hg19 16 31308914 31308914 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITGAM NM_000632 exon13 c.1435delG p.A479fs . . 208.0 13.0 149.0 0.0 . 137 . . Atlas-INDEL FKBP4 2288 hgsc.bcm.edu hg19 12 2907011 2907011 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FKBP4 NM_002014 exon3 c.366delT p.I122fs . . 154.0 11.0 154.0 0.0 . 29 . . Atlas-INDEL GIMAP2 26157 hgsc.bcm.edu hg19 7 150390266 150390266 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GIMAP2 NM_015660 exon3 c.891delG p.L297fs . . 155.0 10.0 79.0 0.0 . 39 . . Atlas-INDEL SMARCA1 6594 hgsc.bcm.edu hg19 X 128649751 128649751 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMARCA1 NM_139035 exon5 c.544delC p.P182fs . . 212.0 13.0 153.0 0.0 . 126 . . Atlas-INDEL TULP2 7288 hgsc.bcm.edu hg19 19 49400644 49400644 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TULP2 NM_003323 exon3 c.43delC p.H15fs . . 153.0 10.0 124.0 0.0 . 60 . . Atlas-INDEL HDDC2 51020 hgsc.bcm.edu hg19 6 125621689 125621689 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HDDC2 NM_016063 exon2 c.202delG p.D68fs . . 178.0 11.0 154.0 0.0 . 21 . . Atlas-INDEL SDCCAG3 10807 hgsc.bcm.edu hg19 9 139303504 139303504 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SDCCAG3 NM_001039707 exon3 c.237delG p.K79fs . . 151.0 10.0 127.0 0.0 . 41 . . Atlas-INDEL RAB6A 5870 hgsc.bcm.edu hg19 11 73431914 73431914 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAB6A NM_002869 exon3 c.161delC p.T54fs . . 160.0 12.0 74.0 0.0 . 17 . . Atlas-INDEL REST 5978 hgsc.bcm.edu hg19 4 57798156 57798156 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 REST,right_lower_lobe,carcinoma,0,1 REST NM_001193508 exon4 c.3131delG p.R1044fs . . 166.0 10.0 145.0 0.0 . 104 . . Atlas-INDEL KIAA1919 91749 hgsc.bcm.edu hg19 6 111587466 111587466 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIAA1919 NM_153369 exon4 c.700delC p.L234fs . . 176.0 11.0 129.0 0.0 . 54 . . Atlas-INDEL PYGM 5837 hgsc.bcm.edu hg19 11 64521090 64521090 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PYGM NM_005609 exon11 c.1305delC p.G435fs . . 150.0 10.0 116.0 0.0 . 77 . . Atlas-INDEL WAPAL 23063 hgsc.bcm.edu hg19 10 88232474 88232474 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WAPAL NM_015045 exon6 c.1789delA p.K597fs . . 130.0 12.0 141.0 0.0 . 81 . . Atlas-INDEL FGD6 55785 hgsc.bcm.edu hg19 12 95501402 95501402 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FGD6 NM_018351 exon12 c.3271delC p.L1091fs . . 126.0 13.0 109.0 0.0 . 127 . . Atlas-INDEL LRRC36 55282 hgsc.bcm.edu hg19 16 67360810 67360810 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRRC36 NM_018296 exon1 c.44delT p.L15fs . . 109.0 11.0 96.0 0.0 . 68 . . Atlas-INDEL DSG3 1830 hgsc.bcm.edu hg19 18 29054359 29054359 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DSG3 NM_001944 exon15 c.2376delC p.Y792fs . . 142.0 10.0 134.0 0.0 . 172 . . Atlas-INDEL CHPT1 56994 hgsc.bcm.edu hg19 12 102107976 102107976 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CHPT1 NM_020244 exon2 c.381delA p.L127fs . . 175.0 11.0 125.0 0.0 . 27 . . Atlas-INDEL CARD9 64170 hgsc.bcm.edu hg19 9 139266450 139266450 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CARD9 NM_052813 exon2 c.82delT p.S28fs . . 174.0 11.0 146.0 0.0 . 47 . . Atlas-INDEL DOCK7 85440 hgsc.bcm.edu hg19 1 63114152 63114152 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DOCK7 NM_001272002 exon5 c.454delG p.G152fs . . 160.0 10.0 145.0 0.0 . 184 . . Atlas-INDEL DDX18 8886 hgsc.bcm.edu hg19 2 118579744 118579744 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DDX18 NM_006773 exon7 c.972delT p.Y324X . . 229.0 14.0 177.0 0.0 . 79 . . Atlas-INDEL ARHGAP11A 9824 hgsc.bcm.edu hg19 15 32929175 32929176 + Frame_Shift_Del DEL AT AT - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARHGAP11A NM_014783 exon12 c.2200_2201del p.734_734del . . 63.0 11.0 47.0 0.0 . 84 . . Atlas-INDEL SLC28A1 9154 hgsc.bcm.edu hg19 15 85431063 85431063 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC28A1 NM_004213 exon3 c.71delT p.M24fs . . 190.0 12.0 161.0 0.0 . 118 . . Atlas-INDEL LMNB2 84823 hgsc.bcm.edu hg19 19 2432473 2432473 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LMNB2 NM_032737 exon9 c.1532delA p.E511fs . . 165.0 10.0 124.0 0.0 . 40 . . Atlas-INDEL ANO2 57101 hgsc.bcm.edu hg19 12 5721863 5721863 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANO2 NM_020373 exon20 c.2047delA p.K683fs . . 161.0 11.0 114.0 0.0 . 309 . . Atlas-INDEL SLC16A5 9121 hgsc.bcm.edu hg19 17 73094135 73094135 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC16A5 NM_001271765 exon4 c.201delG p.G67fs . . 225.0 15.0 147.0 0.0 . 80 . . Atlas-INDEL ITFG1 81533 hgsc.bcm.edu hg19 16 47347686 47347686 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITFG1 NM_030790 exon9 c.852delT p.N284fs . . 146.0 10.0 93.0 0.0 . 49 . . Atlas-INDEL RGL3 57139 hgsc.bcm.edu hg19 19 11526663 11526663 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RGL3 NM_001035223 exon5 c.588delG p.L196fs . . 155.0 11.0 118.0 0.0 . 100 . . Atlas-INDEL ANXA13 312 hgsc.bcm.edu hg19 8 124748069 124748069 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANXA13 NM_001003954 exon2 c.65delA p.D22fs . . 142.0 11.0 147.0 0.0 . 38 . . Atlas-INDEL MICALL1 85377 hgsc.bcm.edu hg19 22 38321985 38321985 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MICALL1 NM_033386 exon8 c.1399delA p.T467fs . . 237.0 16.0 212.0 0.0 . 53 . . Atlas-INDEL OSBPL8 114882 hgsc.bcm.edu hg19 12 76780366 76780366 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OSBPL8 NM_020841 exon13 c.1428delG p.K476fs . . 229.0 16.0 143.0 0.0 . 86 . . Atlas-INDEL NCSTN 23385 hgsc.bcm.edu hg19 1 160318871 160318871 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NCSTN NM_015331 exon3 c.272delA p.N91fs . . 268.0 17.0 145.0 0.0 . 64 . . Atlas-INDEL ARMC9 80210 hgsc.bcm.edu hg19 2 232123766 232123766 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARMC9 NM_025139 exon11 c.976delA p.I326fs . . 185.0 13.0 157.0 0.0 . 129 . . Atlas-INDEL HEATR3 55027 hgsc.bcm.edu hg19 16 50106592 50106592 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HEATR3 NM_182922 exon5 c.588delG p.R196fs . . 153.0 11.0 157.0 0.0 . 59 . . Atlas-INDEL EIF4G3 8672 hgsc.bcm.edu hg19 1 21181509 21181509 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EIF4G3 NM_001198801 exon24 c.3336delA p.G1112fs . . 103.0 10.0 90.0 0.0 . 300 . . Atlas-INDEL IAH1 285148 hgsc.bcm.edu hg19 2 9628363 9628363 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IAH1 NM_001039613 exon6 c.651delG p.E217fs . . 159.0 10.0 152.0 0.0 . 12 . . Atlas-INDEL BMPR2 659 hgsc.bcm.edu hg19 2 203407121 203407121 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BMPR2 NM_001204 exon10 c.1363delA p.R455fs . . 162.0 10.0 138.0 0.0 . 142 . . Atlas-INDEL SYT14 255928 hgsc.bcm.edu hg19 1 210329212 210329212 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SYT14 NM_001146264 exon8 c.1445delT p.I482fs . . 253.0 16.0 132.0 0.0 . 89 . . Atlas-INDEL MCM3 4172 hgsc.bcm.edu hg19 6 52147525 52147525 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MCM3 NM_002388 exon3 c.462delG p.K154fs . . 162.0 10.0 132.0 0.0 . 63 . . Atlas-INDEL PTPRT 11122 hgsc.bcm.edu hg19 20 41306553 41306553 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTPRT NM_007050 exon7 c.1107delT p.G369fs . . 177.0 12.0 125.0 0.0 . 372 . . Atlas-INDEL UST 10090 hgsc.bcm.edu hg19 6 149340329 149340329 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UST NM_005715 exon6 c.735delA p.L245fs . . 174.0 11.0 125.0 0.0 . 42 . . Atlas-INDEL NRXN2 9379 hgsc.bcm.edu hg19 11 64375286 64375286 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,3 NRXN2 NM_015080 exon23 c.4522delA p.T1508fs . . 145.0 12.0 102.0 0.0 . 247 . . Atlas-INDEL KRTAP25-1 100131902 hgsc.bcm.edu hg19 21 31661691 31661691 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KRTAP25-1 NM_001128598 exon1 c.119delC p.S40fs . . 154.0 12.0 183.0 0.0 . 13 . . Atlas-INDEL NEXN 91624 hgsc.bcm.edu hg19 1 78408251 78408251 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NEXN NM_144573 exon13 c.1764delT p.L588fs . . 138.0 10.0 120.0 0.0 . 77 . . Atlas-INDEL CRISP2 7180 hgsc.bcm.edu hg19 6 49660494 49660494 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CRISP2 NM_001142408 exon10 c.725delT p.I242fs . . 136.0 10.0 97.0 0.0 . 53 . . Atlas-INDEL FBXO4 26272 hgsc.bcm.edu hg19 5 41927229 41927229 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FBXO4 NM_033484 exon2 c.303delC p.Y101fs . . 192.0 12.0 134.0 0.0 . 42 . . Atlas-INDEL ATAD3A 55210 hgsc.bcm.edu hg19 1 1463179 1463179 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATAD3A NM_018188 exon14 c.1585delC p.R529fs . . 166.0 10.0 219.0 0.0 . 35 . . Atlas-INDEL TRPM8 79054 hgsc.bcm.edu hg19 2 234879010 234879010 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,2 TRPM8 NM_024080 exon17 c.2294delA p.H765fs . . 242.0 15.0 189.0 0.0 . 146 . . Atlas-INDEL DNAH12 201625 hgsc.bcm.edu hg19 3 57357612 57357612 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNAH12 NM_178504 exon48 c.7411delC p.L2471X . . 161.0 10.0 119.0 0.0 . 182 . . Atlas-INDEL DNAH7 56171 hgsc.bcm.edu hg19 2 196673531 196673531 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNAH7 NM_018897 exon53 c.9959delG p.C3320fs . . 138.0 12.0 120.0 0.0 . 512 . . Atlas-INDEL TMEM59 9528 hgsc.bcm.edu hg19 1 54506473 54506473 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM59 NM_004872 exon6 c.664delC p.L222fs . . 190.0 13.0 186.0 0.0 . 28 . . Atlas-INDEL UNK 85451 hgsc.bcm.edu hg19 17 73808634 73808634 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UNK NM_001080419 exon4 c.589delG p.E197fs . . 155.0 11.0 84.0 0.0 . 87 . . Atlas-INDEL DSG3 1830 hgsc.bcm.edu hg19 18 29055783 29055783 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DSG3 NM_001944 exon16 c.2559delT p.F853fs . . 192.0 12.0 165.0 0.0 . 172 . . Atlas-INDEL C2orf43 60526 hgsc.bcm.edu hg19 2 20901391 20901391 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C2orf43 NM_021925 exon6 c.726delC p.G242fs . . 176.0 11.0 158.0 0.0 . 28 . . Atlas-INDEL FSTL4 23105 hgsc.bcm.edu hg19 5 132553042 132553042 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FSTL4 NM_015082 exon13 c.1488delT p.N496fs . . 167.0 11.0 150.0 0.0 . 74 . . Atlas-INDEL TOP3B 8940 hgsc.bcm.edu hg19 22 22318323 22318323 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TOP3B NM_003935 exon11 c.1177delA p.M393X . . 139.0 10.0 103.0 0.0 . 107 . . Atlas-INDEL GRAMD1C 54762 hgsc.bcm.edu hg19 3 113595052 113595052 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GRAMD1C NM_017577 exon5 c.403delG p.E135fs . . 196.0 12.0 164.0 0.0 . 71 . . Atlas-INDEL PIK3R1 5295 hgsc.bcm.edu hg19 5 67575562 67575565 + Frame_Shift_Del DEL GTTT GTTT - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 GTTT GTTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PIK3R1 NM_181523 exon5 c.634_634del p.212_212del . . 159.0 34.0 127.0 0.0 . 869 . . Atlas-Indel,Pindel NEK8 284086 hgsc.bcm.edu hg19 17 27064915 27064915 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NEK8 NM_178170 exon7 c.967delA p.T323fs . . 116.0 10.0 80.0 0.0 . 76 . . Atlas-INDEL EPHA10 284656 hgsc.bcm.edu hg19 1 38185112 38185112 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EPHA10 NM_001099439 exon15 c.2731delA p.K911fs . . 216.0 13.0 186.0 0.0 . 120 . . Atlas-INDEL RARS2 57038 hgsc.bcm.edu hg19 6 88279277 88279277 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RARS2 NM_020320 exon2 c.69delC p.N23fs . . 161.0 10.0 139.0 0.0 . 61 . . Atlas-INDEL ALG10B 144245 hgsc.bcm.edu hg19 12 38714025 38714025 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ALG10B NM_001013620 exon3 c.431delA p.Y144fs . . 405.0 25.0 317.0 0.0 . 58 . . Atlas-INDEL ADCK4 79934 hgsc.bcm.edu hg19 19 41220518 41220518 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADCK4 NM_001142555 exon2 c.21delC p.G7fs . . 169.0 12.0 155.0 0.0 . 92 . . Atlas-INDEL RNF145 153830 hgsc.bcm.edu hg19 5 158585835 158585835 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RNF145 NM_001199380 exon11 c.1926delA p.P642fs . . 210.0 15.0 168.0 0.0 . 110 . . Atlas-INDEL UBQLN3 50613 hgsc.bcm.edu hg19 11 5529234 5529234 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UBQLN3 NM_017481 exon2 c.1556delG p.R519fs . . 180.0 11.0 128.0 0.0 . 107 . . Atlas-INDEL CHD1 1105 hgsc.bcm.edu hg19 5 98207855 98207855 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CHD1 NM_001270 exon27 c.3762delC p.G1254fs . . 181.0 11.0 128.0 0.0 . 137 . . Atlas-INDEL PIGA 5277 hgsc.bcm.edu hg19 X 15339659 15339659 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PIGA NM_002641 exon6 c.1425delT p.G475fs . . 176.0 12.0 138.0 0.0 . 34 . . Atlas-INDEL HNRPDL 9987 hgsc.bcm.edu hg19 4 83348625 83348625 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HNRPDL NM_031372 exon4 c.868delT p.L290fs . . 183.0 12.0 121.0 0.0 . 35 . . Atlas-INDEL PLCG2 5336 hgsc.bcm.edu hg19 16 81939079 81939079 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLCG2 NM_002661 exon15 c.1433delA p.Q478fs . . 235.0 16.0 172.0 0.0 . 276 . . Atlas-INDEL PREX1 57580 hgsc.bcm.edu hg19 20 47256419 47256419 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PREX1 NM_020820 exon30 c.3790delG p.E1264fs . . 183.0 11.0 131.0 0.0 . 441 . . Atlas-INDEL MYO6 4646 hgsc.bcm.edu hg19 6 76558143 76558143 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYO6 NM_004999 exon11 c.972delG p.M324fs . . 178.0 11.0 141.0 0.0 . 124 . . Atlas-INDEL ITIH5 80760 hgsc.bcm.edu hg19 10 7605064 7605064 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITIH5 NM_030569 exon15 c.2811delA p.G937fs . . 172.0 11.0 172.0 0.0 . 343 . . Atlas-INDEL PHOX2A 401 hgsc.bcm.edu hg19 11 71950817 71950817 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHOX2A NM_005169 exon3 c.832delG p.A278fs . . 181.0 14.0 108.0 0.0 . 14 . . Atlas-INDEL PUM1 9698 hgsc.bcm.edu hg19 1 31532353 31532353 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PUM1 NM_014676 exon2 c.62delA p.H21fs . . 129.0 11.0 97.0 0.0 . 107 . . Atlas-INDEL ZNF562 54811 hgsc.bcm.edu hg19 19 9767254 9767254 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF562 NM_001130032 exon5 c.318delG p.L106fs . . 228.0 14.0 168.0 0.0 . 72 . . Atlas-INDEL CDKL2 8999 hgsc.bcm.edu hg19 4 76523281 76523281 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 CDKL2,NS,carcinoma,0,1 CDKL2 NM_003948 exon8 c.1001delG p.R334fs . . 173.0 11.0 118.0 0.0 . 58 . . Atlas-INDEL FPGT-TNNI3K 100526835 hgsc.bcm.edu hg19 1 74930365 74930365 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001199327 exon24 c.2470delG p.E824fs . . 120.0 10.0 105.0 0.0 . . . . Atlas-INDEL EML5 161436 hgsc.bcm.edu hg19 14 89087164 89087164 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EML5 NM_183387 exon38 c.5310delA p.L1770fs . . 201.0 14.0 171.0 0.0 . 141 . . Atlas-INDEL HDLBP 3069 hgsc.bcm.edu hg19 2 242194991 242194991 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HDLBP NM_005336 exon8 c.879delG p.K293fs . . 207.0 13.0 115.0 0.0 . 118 . . Atlas-INDEL CELF5 60680 hgsc.bcm.edu hg19 19 3290263 3290263 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CELF5 NM_021938 exon11 c.1220delT p.L407fs . . 315.0 19.0 268.0 0.0 . 32 . . Atlas-INDEL PTK7 5754 hgsc.bcm.edu hg19 6 43100230 43100230 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTK7 NM_001270398 exon7 c.1056delT p.L352fs . . 166.0 15.0 155.0 0.0 . 101 . . Atlas-INDEL USH2A 7399 hgsc.bcm.edu hg19 1 216062051 216062051 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USH2A NM_206933 exon41 c.7941delT p.P2647fs . . 171.0 11.0 99.0 0.0 . 1168 . . Atlas-INDEL AHDC1 27245 hgsc.bcm.edu hg19 1 27876439 27876439 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AHDC1 NM_001029882 exon6 c.2189delA p.E730fs . . 249.0 18.0 238.0 0.0 . 98 . . Atlas-INDEL TRAPPC11 60684 hgsc.bcm.edu hg19 4 184596365 184596365 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_021942 exon7 c.708delG p.L236fs . . 131.0 11.0 155.0 0.0 . . . . Atlas-INDEL KIF13A 63971 hgsc.bcm.edu hg19 6 17852235 17852235 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIF13A NM_001105567 exon7 c.534delG p.L178fs . . 184.0 16.0 128.0 0.0 . 276 . . Atlas-INDEL SPATS2 65244 hgsc.bcm.edu hg19 12 49878388 49878388 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPATS2 NM_023071 exon4 c.40delA p.I14fs . . 165.0 14.0 151.0 0.0 . 43 . . Atlas-INDEL EML3 256364 hgsc.bcm.edu hg19 11 62379012 62379012 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EML3 NM_153265 exon2 c.80delA p.E27fs . . 256.0 17.0 119.0 0.0 . 61 . . Atlas-INDEL GARNL3 84253 hgsc.bcm.edu hg19 9 130107748 130107748 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GARNL3 NM_032293 exon16 c.1422delT p.C474X . . 162.0 13.0 140.0 0.0 . 83 . . Atlas-INDEL TMEM2 23670 hgsc.bcm.edu hg19 9 74327107 74327107 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM2 NM_013390 exon16 c.2662delT p.Y888fs . . 197.0 12.0 185.0 0.0 . 112 . . Atlas-INDEL PARP14 54625 hgsc.bcm.edu hg19 3 122399784 122399784 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PARP14 NM_017554 exon1 c.53delA p.D18fs . . 141.0 10.0 137.0 0.0 . 242 . . Atlas-INDEL CCDC138 165055 hgsc.bcm.edu hg19 2 109492664 109492664 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC138 NM_144978 exon15 c.1952delT p.L651fs . . 199.0 12.0 157.0 0.0 . 49 . . Atlas-INDEL LCN15 389812 hgsc.bcm.edu hg19 9 139656669 139656669 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LCN15 NM_203347 exon5 c.492delG p.K164fs . . 226.0 14.0 167.0 0.0 . 11 . . Atlas-INDEL TBC1D17 79735 hgsc.bcm.edu hg19 19 50386052 50386052 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TBC1D17 NM_024682 exon8 c.829delC p.R277fs . . 181.0 11.0 143.0 0.0 . 39 . . Atlas-INDEL MDK 4192 hgsc.bcm.edu hg19 11 46404272 46404272 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MDK NM_001012333 exon4 c.379delA p.T127fs . . 289.0 19.0 252.0 0.0 . 4 . . Atlas-INDEL KDM1A 23028 hgsc.bcm.edu hg19 1 23376988 23376988 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KDM1A NM_001009999 exon4 c.685delG p.V229fs . . 146.0 13.0 117.0 0.0 . 49 . . Atlas-INDEL CAP2 10486 hgsc.bcm.edu hg19 6 17543332 17543332 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CAP2 NM_006366 exon11 c.1166delT p.V389fs . . 173.0 12.0 138.0 0.0 . 61 . . Atlas-INDEL EHBP1 23301 hgsc.bcm.edu hg19 2 63176136 63176136 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EHBP1 NM_015252 exon14 c.2259delC p.I753fs . . 177.0 12.0 163.0 0.0 . 127 . . Atlas-INDEL ATP13A2 23400 hgsc.bcm.edu hg19 1 17312998 17312998 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP13A2 NM_022089 exon28 c.3366delT p.G1122fs . . 170.0 11.0 165.0 0.0 . 85 . . Atlas-INDEL ABHD3 171586 hgsc.bcm.edu hg19 18 19263929 19263929 + Splice_Site DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABHD3 NM_138340 exon5 c.510-2T>- . . . 213.0 13.0 181.0 0.0 . 32 . . Atlas-INDEL TNS3 64759 hgsc.bcm.edu hg19 7 47333390 47333390 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TNS3 NM_022748 exon25 c.3714delG p.L1238fs . . 108.0 10.0 92.0 0.0 . 140 . . Atlas-INDEL TTC1 7265 hgsc.bcm.edu hg19 5 159476629 159476629 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTC1 NM_003314 exon6 c.649delG p.E217fs . . 139.0 12.0 96.0 0.0 . 26 . . Atlas-INDEL DNAH7 56171 hgsc.bcm.edu hg19 2 196799425 196799426 + Frame_Shift_Del DEL CG CG - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 CG CG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNAH7 NM_018897 exon21 c.3361_3362del p.1121_1121del . . 221.0 48.0 208.0 0.0 . 512 . . Atlas-Indel,Pindel SYNE2 23224 hgsc.bcm.edu hg19 14 64518666 64518666 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SYNE2 NM_182914 exon48 c.8034delA p.G2678fs . . 186.0 12.0 153.0 0.0 . 577 . . Atlas-INDEL APC 324 hgsc.bcm.edu hg19 5 112176345 112176345 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . APC NM_001127510 exon17 c.5053delG p.E1685fs . . 114.0 11.0 104.0 0.0 . 4158 . . Atlas-INDEL VIPR1 7433 hgsc.bcm.edu hg19 3 42576497 42576497 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . VIPR1 NM_004624 exon11 c.1040delT p.I347fs . . 198.0 14.0 179.0 0.0 . 45 . . Atlas-INDEL FBXL18 80028 hgsc.bcm.edu hg19 7 5540757 5540757 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FBXL18 NM_024963 exon3 c.1144delT p.C382fs . . 153.0 10.0 170.0 0.0 . 99 . . Atlas-INDEL ZNF148 7707 hgsc.bcm.edu hg19 3 124952718 124952718 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF148 NM_021964 exon9 c.853delC p.L285X . . 130.0 10.0 100.0 0.0 . 84 . . Atlas-INDEL CKM 1158 hgsc.bcm.edu hg19 19 45811713 45811713 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 CKM NM_001824 exon6 c.732delC p.G244fs . . 162.0 12.0 104.0 0.0 . 40 . . Atlas-INDEL EFHC1 114327 hgsc.bcm.edu hg19 6 52343943 52343943 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EFHC1 NM_018100 exon8 c.1386delT p.I462fs . . 151.0 12.0 131.0 0.0 . 68 . . Atlas-INDEL TMEM87A 25963 hgsc.bcm.edu hg19 15 42512286 42512286 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM87A NM_015497 exon16 c.1452delG p.K484fs . . 198.0 12.0 141.0 0.0 . 56 . . Atlas-INDEL CTU2 348180 hgsc.bcm.edu hg19 16 88780815 88780815 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CTU2 NM_001012759 exon11 c.1121delG p.G374fs . . 192.0 12.0 162.0 0.0 . 66 . . Atlas-INDEL PPOX 5498 hgsc.bcm.edu hg19 1 161140731 161140731 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PPOX NM_001122764 exon12 c.1282delC p.Q428fs . . 129.0 10.0 92.0 0.0 . 34 . . Atlas-INDEL MUTYH 4595 hgsc.bcm.edu hg19 1 45797094 45797094 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MUTYH NM_001128425 exon13 c.1322delA p.E441fs . . 159.0 12.0 140.0 0.0 . 38 . . Atlas-INDEL SMPD4 55627 hgsc.bcm.edu hg19 2 130910956 130910956 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMPD4 NM_017951 exon18 c.2079delG p.K693fs . . 194.0 12.0 156.0 0.0 . 67 . . Atlas-INDEL SCN7A 6332 hgsc.bcm.edu hg19 2 167313428 167313428 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCN7A NM_002976 exon10 c.1243delT p.F415fs . . 194.0 12.0 169.0 0.0 . 410 . . Atlas-INDEL RNF44 22838 hgsc.bcm.edu hg19 5 175956599 175956599 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RNF44 NM_014901 exon9 c.1062delT p.G354fs . . 181.0 11.0 164.0 0.0 . 33 . . Atlas-INDEL ACSBG2 81616 hgsc.bcm.edu hg19 19 6183239 6183239 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ACSBG2 NM_030924 exon10 c.1277delC p.S426fs . . 170.0 11.0 138.0 0.0 . 83 . . Atlas-INDEL SPATA7 55812 hgsc.bcm.edu hg19 14 88883150 88883150 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPATA7 NM_018418 exon5 c.333delT p.Y111X . . 163.0 10.0 174.0 0.0 . 58 . . Atlas-INDEL INPP5J 27124 hgsc.bcm.edu hg19 22 31524051 31524051 + Splice_Site DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . INPP5J NM_001002837 exon7 c.795+2G>- . . . 154.0 11.0 122.0 0.0 . 94 . . Atlas-INDEL ASUN 55726 hgsc.bcm.edu hg19 12 27067353 27067353 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_018164 exon12 c.1408delA p.N470fs . . 173.0 12.0 131.0 0.0 . . . . Atlas-INDEL GATAD2A 54815 hgsc.bcm.edu hg19 19 19609429 19609429 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GATAD2A NM_017660 exon8 c.1101delG p.K367fs . . 279.0 17.0 210.0 0.0 . 81 . . Atlas-INDEL ATP5A1 498 hgsc.bcm.edu hg19 18 43666170 43666170 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP5A1 NM_004046 exon10 c.1339delG p.A447fs . . 209.0 13.0 141.0 0.0 . 52 . . Atlas-INDEL LGALS4 3960 hgsc.bcm.edu hg19 19 39294528 39294528 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LGALS4 NM_006149 exon5 c.483delG p.P161fs . . 129.0 10.0 93.0 0.0 . 39 . . Atlas-INDEL NUB1 51667 hgsc.bcm.edu hg19 7 151052912 151052912 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NUB1 NM_016118 exon6 c.545delT p.L182fs . . 176.0 11.0 113.0 0.0 . 31 . . Atlas-INDEL AIRE 326 hgsc.bcm.edu hg19 21 45707420 45707420 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AIRE NM_000383 exon4 c.483delG p.K161fs . . 263.0 17.0 347.0 0.0 . 61 . . Atlas-INDEL ZNF516 9658 hgsc.bcm.edu hg19 18 74153203 74153203 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF516 NM_014643 exon3 c.1809delA p.P603fs . . 134.0 10.0 106.0 0.0 . 102 . . Atlas-INDEL ATP9A 10079 hgsc.bcm.edu hg19 20 50307291 50307291 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP9A NM_006045 exon8 c.711delA p.G237fs . . 156.0 11.0 120.0 0.0 . 135 . . Atlas-INDEL PSMD12 5718 hgsc.bcm.edu hg19 17 65340878 65340878 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PSMD12 NM_002816 exon9 c.928delA p.T310fs . . 258.0 16.0 215.0 0.0 . 32 . . Atlas-INDEL UFSP1 402682 hgsc.bcm.edu hg19 7 100486590 100486590 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UFSP1 NM_001015072 exon1 c.304delA p.S102fs . . 171.0 11.0 131.0 0.0 . 8 . . Atlas-INDEL WFDC3 140686 hgsc.bcm.edu hg19 20 44416474 44416474 + Splice_Site DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WFDC3 NM_080614 exon5 c.358+2G>- . . . 217.0 14.0 197.0 0.0 . 18 . . Atlas-INDEL NCOA6 23054 hgsc.bcm.edu hg19 20 33329681 33329681 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NCOA6 NM_014071 exon11 c.4380delG p.K1460fs . . 197.0 12.0 166.0 0.0 . 219 . . Atlas-INDEL AHSA1 10598 hgsc.bcm.edu hg19 14 77929054 77929054 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AHSA1 NM_012111 exon4 c.423delG p.V141fs . . 157.0 10.0 120.0 0.0 . 24 . . Atlas-INDEL PATZ1 23598 hgsc.bcm.edu hg19 22 31723029 31723029 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PATZ1 NM_014323 exon5 c.1913delA p.D638fs . . 183.0 13.0 126.0 0.0 . 24 . . Atlas-INDEL PLOD2 5352 hgsc.bcm.edu hg19 3 145806385 145806385 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLOD2 NM_182943 exon9 c.994delA p.I332fs . . 162.0 12.0 110.0 0.0 . 81 . . Atlas-INDEL AMN 81693 hgsc.bcm.edu hg19 14 103390126 103390126 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AMN NM_030943 exon2 c.121delA p.T41fs . . 150.0 11.0 104.0 0.0 . 13 . . Atlas-INDEL B3GALT4 8705 hgsc.bcm.edu hg19 6 33245843 33245843 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . B3GALT4 NM_003782 exon1 c.646delG p.V216fs . . 154.0 10.0 135.0 0.0 . 30 . . Atlas-INDEL LAMA5 3911 hgsc.bcm.edu hg19 20 60928262 60928262 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LAMA5 NM_005560 exon3 c.497delG p.R166fs . . 178.0 11.0 137.0 0.0 . 268 . . Atlas-INDEL PAFAH1B1 5048 hgsc.bcm.edu hg19 17 2569341 2569341 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PAFAH1B1 NM_000430 exon4 c.148delC p.L50fs . . 112.0 12.0 123.0 0.0 . 26 . . Atlas-INDEL IGSF1 3547 hgsc.bcm.edu hg19 X 130417076 130417076 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IGSF1 NM_001555 exon6 c.831delT p.N277fs . . 249.0 16.0 226.0 0.0 . 231 . . Atlas-INDEL CASKIN1 57524 hgsc.bcm.edu hg19 16 2239271 2239271 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CASKIN1 NM_020764 exon5 c.455delT p.L152fs . . 165.0 11.0 98.0 0.0 . 130 . . Atlas-INDEL DHX33 56919 hgsc.bcm.edu hg19 17 5353579 5353579 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DHX33 NM_020162 exon10 c.1673delA p.D558fs . . 147.0 11.0 173.0 0.0 . 41 . . Atlas-INDEL TLE3 7090 hgsc.bcm.edu hg19 15 70358457 70358457 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TLE3 NM_001105192 exon7 c.474delA p.P158fs . . 226.0 14.0 161.0 0.0 . 104 . . Atlas-INDEL IGSF22 283284 hgsc.bcm.edu hg19 11 18741308 18741308 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IGSF22 NM_173588 exon7 c.652delC p.L218fs . . 191.0 13.0 141.0 0.0 . 211 . . Atlas-INDEL ILDR1 286676 hgsc.bcm.edu hg19 3 121712685 121712685 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 ILDR1_ENST00000344209,NS,carcinoma,0,2 ILDR1 NM_001199799 exon7 c.912delT p.P304fs . . 155.0 11.0 128.0 0.0 . 120 . . Atlas-INDEL DMTF1 9988 hgsc.bcm.edu hg19 7 86813845 86813845 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DMTF1 NM_001142327 exon11 c.952delG p.E318fs . . 193.0 12.0 74.0 0.0 . 48 . . Atlas-INDEL MYH15 22989 hgsc.bcm.edu hg19 3 108205276 108205276 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYH15 NM_014981 exon11 c.1030delA p.T344fs . . 159.0 10.0 162.0 0.0 . 223 . . Atlas-INDEL PM20D2 135293 hgsc.bcm.edu hg19 6 89864571 89864571 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PM20D2 NM_001010853 exon4 c.861delC p.T287fs . . 213.0 13.0 178.0 0.0 . 30 . . Atlas-INDEL T 6862 hgsc.bcm.edu hg19 6 166579270 166579270 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . T NM_001270484 exon4 c.531delT p.G177fs . . 154.0 10.0 192.0 0.0 . 77 . . Atlas-INDEL UACA 55075 hgsc.bcm.edu hg19 15 70959454 70959454 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UACA NM_018003 exon16 c.3570delG p.K1190fs . . 156.0 10.0 136.0 0.0 . 235 . . Atlas-INDEL WDR46 9277 hgsc.bcm.edu hg19 6 33247088 33247088 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WDR46 NM_005452 exon15 c.1799delC p.A600fs . . 159.0 10.0 139.0 0.0 . 43 . . Atlas-INDEL SEC16B 89866 hgsc.bcm.edu hg19 1 177901668 177901668 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SEC16B NM_033127 exon24 c.2970delA p.G990fs . . 213.0 13.0 117.0 0.0 . 92 . . Atlas-INDEL NLRC4 58484 hgsc.bcm.edu hg19 2 32449804 32449804 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 NLRC4_ENST00000404025,NS,carcinoma,0,1 NLRC4 NM_001199139 exon9 c.2814delC p.N938fs . . 102.0 11.0 77.0 0.0 . 165 . . Atlas-INDEL KCNQ5 56479 hgsc.bcm.edu hg19 6 73787512 73787512 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KCNQ5 NM_001160132 exon5 c.819delA p.G273fs . . 140.0 11.0 107.0 0.0 . 153 . . Atlas-INDEL DDX46 9879 hgsc.bcm.edu hg19 5 134109494 134109494 + Frame_Shift_Del DEL A A - rs35026423 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DDX46 NM_014829 exon5 c.555delG p.L185fs . . 172.0 12.0 118.0 0.0 . 77 . . Atlas-INDEL C1orf74 148304 hgsc.bcm.edu hg19 1 209956336 209956336 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C1orf74 NM_152485 exon2 c.645delA p.P215fs . . 175.0 11.0 101.0 0.0 . 30 . . Atlas-INDEL PBRM1 55193 hgsc.bcm.edu hg19 3 52712558 52712558 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PBRM1 NM_018313 exon3 c.195delC p.G65fs . . 149.0 10.0 130.0 0.0 . 1252 . . Atlas-INDEL COL8A1 1295 hgsc.bcm.edu hg19 3 99513597 99513597 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL8A1 NM_001850 exon5 c.851delG p.G284fs . . 89.0 10.0 56.0 0.0 . 68 . . Atlas-INDEL HERC6 55008 hgsc.bcm.edu hg19 4 89326115 89326115 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HERC6 NM_017912 exon9 c.1179delG p.V393fs . . 166.0 10.0 129.0 0.0 . 104 . . Atlas-INDEL FAM186A 121006 hgsc.bcm.edu hg19 12 50746097 50746097 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FAM186A NM_001145475 exon4 c.4519delC p.L1507fs . . 171.0 11.0 125.0 0.0 . 181 . . Atlas-INDEL ASH1L 55870 hgsc.bcm.edu hg19 1 155408163 155408163 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ASH1L NM_018489 exon5 c.5784delG p.K1928fs . . 164.0 12.0 84.0 0.0 . 279 . . Atlas-INDEL HES1 3280 hgsc.bcm.edu hg19 3 193854479 193854479 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HES1 NM_005524 exon2 c.181delA p.I61fs . . 220.0 14.0 155.0 0.0 . 23 . . Atlas-INDEL LRRFIP1 9208 hgsc.bcm.edu hg19 2 238647924 238647924 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRRFIP1 NM_001137550 exon11 c.604delA p.R202fs . . 166.0 11.0 121.0 0.0 . 171 . . Atlas-INDEL LPIN3 64900 hgsc.bcm.edu hg19 20 39977799 39977799 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LPIN3 NM_022896 exon5 c.624delG p.W208fs . . 158.0 10.0 130.0 0.0 . 69 . . Atlas-INDEL PSRC1 84722 hgsc.bcm.edu hg19 1 109824582 109824582 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PSRC1 NM_001032291 exon4 c.179delA p.Q60fs . . 168.0 11.0 105.0 0.0 . 12 . . Atlas-INDEL UBA3 9039 hgsc.bcm.edu hg19 3 69117114 69117114 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UBA3 NM_003968 exon6 c.394delC p.L132X . . 208.0 13.0 167.0 0.0 . 43 . . Atlas-INDEL HERC5 51191 hgsc.bcm.edu hg19 4 89407334 89407334 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HERC5 NM_016323 exon14 c.1805delA p.N602fs . . 163.0 15.0 130.0 0.0 . 114 . . Atlas-INDEL ATP12A 479 hgsc.bcm.edu hg19 13 25280558 25280558 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP12A NM_001185085 exon15 c.2143delT p.S715fs . . 190.0 12.0 222.0 0.0 . 172 . . Atlas-INDEL SCN10A 6336 hgsc.bcm.edu hg19 3 38739704 38739704 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCN10A NM_006514 exon27 c.5008delA p.I1670fs . . 186.0 13.0 162.0 0.0 . 359 . . Atlas-INDEL CCDC93 54520 hgsc.bcm.edu hg19 2 118735578 118735578 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC93 NM_019044 exon8 c.650delT p.M217fs . . 147.0 10.0 145.0 0.0 . 70 . . Atlas-INDEL ENTPD6 955 hgsc.bcm.edu hg19 20 25187773 25187773 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ENTPD6 NM_001247 exon3 c.115delC p.R39fs . . 129.0 10.0 100.0 0.0 . 57 . . Atlas-INDEL C6orf1 221491 hgsc.bcm.edu hg19 6 34214570 34214570 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C6orf1 NM_001008704 exon5 c.202delT p.L68fs . . 153.0 10.0 116.0 0.0 . 6 . . Atlas-INDEL MIR556 693141 hgsc.bcm.edu hg19 1 162312409 162312409 + RNA DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . . . . . . . 176.0 13.0 103.0 0.0 . . . . Atlas-INDEL SRRT 51593 hgsc.bcm.edu hg19 7 100485681 100485681 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SRRT NM_015908 exon18 c.2344delA p.T782fs . . 165.0 10.0 137.0 0.0 . 108 . . Atlas-INDEL SPINK6 404203 hgsc.bcm.edu hg19 5 147593496 147593496 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPINK6 NM_205841 exon3 c.104delA p.D35fs . . 159.0 10.0 149.0 0.0 . 8 . . Atlas-INDEL FAM221B 392307 hgsc.bcm.edu hg19 9 35825746 35825746 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FAM221B NM_001012446 exon2 c.414delA p.P138fs . . 140.0 11.0 109.0 0.0 . 38 . . Atlas-INDEL ARHGEF26 26084 hgsc.bcm.edu hg19 3 153847453 153847453 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARHGEF26 NM_015595 exon4 c.1213delG p.E405fs . . 232.0 17.0 182.0 0.0 . 158 . . Atlas-INDEL ZNF324B 388569 hgsc.bcm.edu hg19 19 58967548 58967548 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF324B NM_207395 exon4 c.1236delC p.L412fs . . 226.0 14.0 139.0 0.0 . 58 . . Atlas-INDEL RIT2 6014 hgsc.bcm.edu hg19 18 40323632 40323632 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 RIT2 NM_002930 exon5 c.481delG p.E161fs . . 116.0 10.0 101.0 0.0 . 56 . . Atlas-INDEL TFIP11 24144 hgsc.bcm.edu hg19 22 26902743 26902743 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TFIP11 NM_001008697 exon6 c.362delC p.T121fs . . 140.0 10.0 103.0 0.0 . 72 . . Atlas-INDEL FER1L6 654463 hgsc.bcm.edu hg19 8 125029888 125029888 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FER1L6 NM_001039112 exon16 c.1942delG p.E648fs . . 101.0 11.0 104.0 0.0 . 268 . . Atlas-INDEL DHX36 170506 hgsc.bcm.edu hg19 3 154010423 154010423 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DHX36 NM_020865 exon15 c.1732delG p.D578fs . . 203.0 13.0 196.0 0.0 . 98 . . Atlas-INDEL INO80D 54891 hgsc.bcm.edu hg19 2 206892990 206892990 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . INO80D NM_017759 exon6 c.1144delT p.Y382fs . . 132.0 10.0 116.0 0.0 . 134 . . Atlas-INDEL SNORD12B 100113393 hgsc.bcm.edu hg19 20 47896879 47896879 + RNA DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . . . . . . . 213.0 13.0 214.0 0.0 . . . . Atlas-INDEL RGPD5 84220 hgsc.bcm.edu hg19 2 111292773 111292773 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RGPD5 NM_005054 exon20 c.3191delT p.V1064fs . . 132.0 10.0 99.0 0.0 . 1 . . Atlas-INDEL ADCY10 55811 hgsc.bcm.edu hg19 1 167806547 167806547 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADCY10 NM_018417 exon22 c.3018delG p.K1006fs . . 181.0 11.0 98.0 0.0 . 175 . . Atlas-INDEL OR4K17 390436 hgsc.bcm.edu hg19 14 20586015 20586015 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OR4K17 NM_001004715 exon1 c.449delC p.A150fs . . 176.0 11.0 146.0 0.0 . 58 . . Atlas-INDEL VWA5A 4013 hgsc.bcm.edu hg19 11 123994945 123994945 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . VWA5A NM_014622 exon10 c.1165delC p.L389fs . . 230.0 14.0 121.0 0.0 . 102 . . Atlas-INDEL TTN 7273 hgsc.bcm.edu hg19 2 179614678 179614678 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTN NM_133379 exon46 c.12450delG p.L4150fs . . 220.0 14.0 196.0 0.0 . 18412 . . Atlas-INDEL KIF19 124602 hgsc.bcm.edu hg19 17 72338849 72338849 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIF19 NM_153209 exon4 c.311delG p.G104fs . . 163.0 10.0 132.0 0.0 . 102 . . Atlas-INDEL SERPINA9 327657 hgsc.bcm.edu hg19 14 94933604 94933604 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SERPINA9 NM_175739 exon3 c.799delG p.G267fs . . 165.0 13.0 114.0 0.0 . 105 . . Atlas-INDEL KIF2A 3796 hgsc.bcm.edu hg19 5 61643927 61643927 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIF2A NM_001243953 exon3 c.211delG p.E71fs . . 170.0 11.0 123.0 0.0 . 69 . . Atlas-INDEL ZC3H18 124245 hgsc.bcm.edu hg19 16 88691079 88691079 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZC3H18 NM_144604 exon12 c.1967delT p.V656fs . . 209.0 14.0 123.0 0.0 . 90 . . Atlas-INDEL MYO15A 51168 hgsc.bcm.edu hg19 17 18051452 18051452 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYO15A NM_016239 exon30 c.6618delA p.L2206fs . . 202.0 13.0 148.0 0.0 . 268 . . Atlas-INDEL CHEK2 11200 hgsc.bcm.edu hg19 22 29099532 29099532 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CHEK2 NM_001005735 exon9 c.999delC p.N333fs . . 131.0 10.0 84.0 0.0 . 438 . . Atlas-INDEL MACROD1 28992 hgsc.bcm.edu hg19 11 63767024 63767024 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MACROD1 NM_014067 exon7 c.796delT p.C266fs . . 154.0 11.0 92.0 0.0 . 17 . . Atlas-INDEL WHSC1 7468 hgsc.bcm.edu hg19 4 1957786 1957786 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WHSC1 NM_133335 exon15 c.2751delA p.E917fs . . 169.0 11.0 129.0 0.0 . 180 . . Atlas-INDEL CACNA1G 8913 hgsc.bcm.edu hg19 17 48704048 48704048 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CACNA1G NM_018896 exon38 c.7069delT p.S2357fs . . 156.0 12.0 151.0 0.0 . 659 . . Atlas-INDEL OAS3 4940 hgsc.bcm.edu hg19 12 113402157 113402157 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OAS3 NM_006187 exon11 c.2346delA p.S782fs . . 180.0 12.0 172.0 0.0 . 63 . . Atlas-INDEL ANKFY1 51479 hgsc.bcm.edu hg19 17 4076695 4076695 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKFY1 NM_001257999 exon21 c.3095delT p.V1032fs . . 151.0 11.0 150.0 0.0 . 81 . . Atlas-INDEL TRRAP 8295 hgsc.bcm.edu hg19 7 98575870 98575870 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRRAP NM_001244580 exon56 c.8400delC p.A2800fs . . 258.0 17.0 127.0 0.0 . 863 . . Atlas-INDEL PLEKHA7 144100 hgsc.bcm.edu hg19 11 16816462 16816462 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLEKHA7 NM_175058 exon18 c.2514delT p.N838fs . . 140.0 10.0 121.0 0.0 . 120 . . Atlas-INDEL CEBPZ 10153 hgsc.bcm.edu hg19 2 37455194 37455194 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CEBPZ NM_005760 exon2 c.1143delG p.K381fs . . 159.0 10.0 105.0 0.0 . 68 . . Atlas-INDEL PCDHB12 56124 hgsc.bcm.edu hg19 5 140588664 140588664 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 PCDHB12,caecum,carcinoma,0,2 PCDHB12 NM_018932 exon1 c.184delC p.R62fs . . 162.0 11.0 115.0 0.0 . 179 . . Atlas-INDEL AGTR1 185 hgsc.bcm.edu hg19 3 148459417 148459417 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AGTR1 NM_031850 exon4 c.699delC p.T233fs . . 164.0 11.0 136.0 0.0 . 63 . . Atlas-INDEL BCAR3 8412 hgsc.bcm.edu hg19 1 94140264 94140264 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BCAR3 NM_001261409 exon2 c.224delA p.H75fs . . 156.0 10.0 120.0 0.0 . 62 . . Atlas-INDEL STT3B 201595 hgsc.bcm.edu hg19 3 31661295 31661295 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 STT3B NM_178862 exon9 c.1299delC p.I433fs . . 159.0 10.0 129.0 0.0 . 52 . . Atlas-INDEL HFM1 164045 hgsc.bcm.edu hg19 1 91844032 91844032 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HFM1 NM_001017975 exon10 c.1165delT p.W389fs . . 187.0 12.0 129.0 0.0 . 188 . . Atlas-INDEL MYBPHL 343263 hgsc.bcm.edu hg19 1 109837772 109837772 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYBPHL NM_001010985 exon7 c.1016delT p.L339fs . . 205.0 15.0 184.0 0.0 . 28 . . Atlas-INDEL AXL 558 hgsc.bcm.edu hg19 19 41725374 41725374 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AXL NM_021913 exon1 c.76delG p.A26fs . . 222.0 14.0 279.0 0.0 . 126 . . Atlas-INDEL CBFA2T2 9139 hgsc.bcm.edu hg19 20 32207380 32207380 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CBFA2T2 NM_005093 exon5 c.504delT p.F168fs . . 143.0 10.0 95.0 0.0 . 93 . . Atlas-INDEL USP34 9736 hgsc.bcm.edu hg19 2 61507429 61507429 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP34 NM_014709 exon39 c.5207delG p.W1736fs . . 195.0 13.0 176.0 0.0 . 334 . . Atlas-INDEL SF1 7536 hgsc.bcm.edu hg19 11 64540917 64540917 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SF1 NM_001178030 exon3 c.597delT p.P199fs . . 166.0 10.0 93.0 0.0 . 124 . . Atlas-INDEL ADHFE1 137872 hgsc.bcm.edu hg19 8 67359569 67359569 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADHFE1 NM_144650 exon7 c.620delT p.V207fs . . 151.0 10.0 138.0 0.0 . 83 . . Atlas-INDEL RADIL 55698 hgsc.bcm.edu hg19 7 4841575 4841575 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RADIL NM_018059 exon12 c.2552delT p.L851fs . . 128.0 10.0 87.0 0.0 . 110 . . Atlas-INDEL PHF3 23469 hgsc.bcm.edu hg19 6 64395267 64395267 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHF3 NM_015153 exon3 c.1643delG p.R548fs . . 182.0 11.0 162.0 0.0 . 191 . . Atlas-INDEL EFCAB7 84455 hgsc.bcm.edu hg19 1 64034025 64034025 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EFCAB7 NM_032437 exon12 c.1541delC p.P514fs . . 143.0 10.0 100.0 0.0 . 45 . . Atlas-INDEL NUCB2 4925 hgsc.bcm.edu hg19 11 17332420 17332420 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NUCB2 NM_005013 exon7 c.531delT p.F177fs . . 157.0 11.0 130.0 0.0 . 31 . . Atlas-INDEL WWP1 11059 hgsc.bcm.edu hg19 8 87454970 87454970 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WWP1 NM_007013 exon18 c.1960delC p.L654fs . . 165.0 12.0 143.0 0.0 . 97 . . Atlas-INDEL MB21D1 115004 hgsc.bcm.edu hg19 6 74161746 74161746 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MB21D1 NM_138441 exon1 c.160delG p.A54fs . . 179.0 12.0 145.0 0.0 . 33 . . Atlas-INDEL CCDC59 29080 hgsc.bcm.edu hg19 12 82746994 82746994 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC59 NM_014167 exon4 c.663delG p.K221fs . . 190.0 12.0 163.0 0.0 . 17 . . Atlas-INDEL WDSUB1 151525 hgsc.bcm.edu hg19 2 160092653 160092653 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WDSUB1 NM_152528 exon11 c.1323delG p.K441fs . . 148.0 11.0 110.0 0.0 . 39 . . Atlas-INDEL KANSL1L 151050 hgsc.bcm.edu hg19 2 211018375 211018375 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_152519 exon2 c.933delT p.N311fs . . 257.0 16.0 205.0 0.0 . . . . Atlas-INDEL TTN 7273 hgsc.bcm.edu hg19 2 179483342 179483342 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTN NM_001267550 exon251 c.46936delG p.A15646fs . . 129.0 12.0 83.0 0.0 . 18412 . . Atlas-INDEL EIF4G1 1981 hgsc.bcm.edu hg19 3 184039824 184039824 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EIF4G1 NM_001194947 exon10 c.1472delT p.L491fs . . 224.0 16.0 177.0 0.0 . 151 . . Atlas-INDEL ANKRD30A 91074 hgsc.bcm.edu hg19 10 37508625 37508625 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKRD30A NM_052997 exon34 c.3816delC p.S1272fs . . 199.0 12.0 135.0 0.0 . 448 . . Atlas-INDEL AK7 122481 hgsc.bcm.edu hg19 14 96937927 96937927 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AK7 NM_152327 exon13 c.1469delC p.A490fs . . 162.0 13.0 107.0 0.0 . 69 . . Atlas-INDEL SUGP2 10147 hgsc.bcm.edu hg19 19 19136181 19136181 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SUGP2 NM_014884 exon3 c.977delC p.S326X . . 159.0 10.0 102.0 0.0 . 107 . . Atlas-INDEL TOP3A 7156 hgsc.bcm.edu hg19 17 18217965 18217965 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TOP3A NM_004618 exon1 c.129delC p.N43fs . . 216.0 15.0 151.0 0.0 . 85 . . Atlas-INDEL FANCM 57697 hgsc.bcm.edu hg19 14 45654537 45654537 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FANCM NM_020937 exon18 c.4632delC p.D1544fs . . 188.0 13.0 153.0 0.0 . 225 . . Atlas-INDEL C11orf30 56946 hgsc.bcm.edu hg19 11 76162945 76162945 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C11orf30 NM_020193 exon3 c.113delA p.Q38fs . . 173.0 12.0 88.0 0.0 . 123 . . Atlas-INDEL NUP205 23165 hgsc.bcm.edu hg19 7 135311045 135311045 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NUP205 NM_015135 exon33 c.4728delA p.S1576fs . . 129.0 10.0 91.0 0.0 . 198 . . Atlas-INDEL NDRG3 57446 hgsc.bcm.edu hg19 20 35310974 35310974 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NDRG3 NM_032013 exon7 c.392delG p.S131fs . . 211.0 16.0 135.0 0.0 . 32 . . Atlas-INDEL RPGR 6103 hgsc.bcm.edu hg19 X 38146456 38146456 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RPGR NM_001034853 exon15 c.1797delT p.N599fs . . 181.0 11.0 116.0 0.0 . 175 . . Atlas-INDEL ANKHD1 54882 hgsc.bcm.edu hg19 5 139905676 139905676 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 ANKHD1-EIF4EBP3,colon,carcinoma,0,2 ANKHD1 NM_017747 exon26 c.4587delG p.G1529fs . . 134.0 10.0 111.0 0.0 . 233 . . Atlas-INDEL GOSR1 9527 hgsc.bcm.edu hg19 17 28849276 28849276 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GOSR1 NM_004871 exon9 c.632delG p.R211fs . . 177.0 12.0 147.0 0.0 . 25 . . Atlas-INDEL SLFN12L 100506736 hgsc.bcm.edu hg19 17 33806378 33806378 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLFN12L NM_001195790 exon2 c.852delT p.N284fs . . 189.0 12.0 121.0 0.0 . 140 . . Atlas-INDEL SCG2 7857 hgsc.bcm.edu hg19 2 224462280 224462280 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCG2 NM_003469 exon2 c.1722delG p.P574fs . . 249.0 15.0 187.0 0.0 . 99 . . Atlas-INDEL SLC44A3 126969 hgsc.bcm.edu hg19 1 95356749 95356749 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC44A3 NM_001114106 exon13 c.1545delC p.F515fs . . 189.0 12.0 150.0 0.0 . 109 . . Atlas-INDEL ZNF366 167465 hgsc.bcm.edu hg19 5 71739993 71739993 + Frame_Shift_Del DEL C C - rs34417316 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF366 NM_152625 exon5 c.1826delA p.E609fs . . 141.0 10.0 122.0 0.0 . 108 . . Atlas-INDEL GPC5 2262 hgsc.bcm.edu hg19 13 92345489 92345489 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPC5 NM_004466 exon3 c.373delC p.L125fs . . 166.0 10.0 162.0 0.0 . 140 . . Atlas-INDEL REL 5966 hgsc.bcm.edu hg19 2 61147771 61147771 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . REL NM_002908 exon10 c.1080delC p.F360fs . . 213.0 13.0 153.0 0.0 . 48 . . Atlas-INDEL EXD3 54932 hgsc.bcm.edu hg19 9 140268006 140268006 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EXD3 NM_017820 exon4 c.167delT p.L56fs . . 183.0 11.0 151.0 0.0 . 86 . . Atlas-INDEL CDH23 64072 hgsc.bcm.edu hg19 10 73326586 73326586 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDH23 NM_052836 exon7 c.516delG p.Q172fs . . 120.0 10.0 128.0 0.0 . 365 . . Atlas-INDEL EPHA10 284656 hgsc.bcm.edu hg19 1 38184055 38184055 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EPHA10 NM_001099439 exon17 c.3017delT p.V1006fs . . 230.0 15.0 169.0 0.0 . 120 . . Atlas-INDEL CEP76 79959 hgsc.bcm.edu hg19 18 12678387 12678387 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CEP76 NM_024899 exon10 c.1345delC p.P449fs . . 154.0 10.0 134.0 0.0 . 45 . . Atlas-INDEL APC 324 hgsc.bcm.edu hg19 5 112164604 112164604 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . APC NM_001127510 exon15 c.1677delT p.S559fs . . 239.0 16.0 203.0 0.0 . 4158 . . Atlas-INDEL SLC3A1 6519 hgsc.bcm.edu hg19 2 44502687 44502687 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC3A1 NM_000341 exon1 c.12delT p.D4fs . . 246.0 15.0 169.0 0.0 . 62 . . Atlas-INDEL SCAF11 9169 hgsc.bcm.edu hg19 12 46328022 46328022 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCAF11 NM_004719 exon8 c.570delC p.F190fs . . 171.0 11.0 118.0 0.0 . 145 . . Atlas-INDEL LOC100873065 0 hgsc.bcm.edu hg19 X 23020376 23020376 + RNA DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . . . . . . . 229.0 14.0 188.0 0.0 . . . . Atlas-INDEL TRAF5 7188 hgsc.bcm.edu hg19 1 211526743 211526743 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRAF5 NM_001033910 exon2 c.161delA p.N54fs . . 158.0 10.0 82.0 0.0 . 64 . . Atlas-INDEL UBAC1 10422 hgsc.bcm.edu hg19 9 138845578 138845578 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UBAC1 NM_016172 exon3 c.282delG p.K94fs . . 120.0 10.0 116.0 0.0 . 40 . . Atlas-INDEL MAN2B1 4125 hgsc.bcm.edu hg19 19 12760238 12760238 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAN2B1 NM_000528 exon19 c.2273delA p.D758fs . . 216.0 18.0 152.0 0.0 . 91 . . Atlas-INDEL RALGAPA2 57186 hgsc.bcm.edu hg19 20 20493319 20493319 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RALGAPA2 NM_020343 exon32 c.4695delG p.L1565fs . . 187.0 13.0 148.0 0.0 . 274 . . Atlas-INDEL PFAS 5198 hgsc.bcm.edu hg19 17 8172524 8172524 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PFAS NM_012393 exon28 c.3958delT p.S1320fs . . 114.0 11.0 144.0 0.0 . 91 . . Atlas-INDEL FZD8 8325 hgsc.bcm.edu hg19 10 35929138 35929138 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FZD8 NM_031866 exon1 c.1221delC p.G407fs . . 117.0 10.0 61.0 0.0 . 41 . . Atlas-INDEL LAMA3 3909 hgsc.bcm.edu hg19 18 21399914 21399914 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LAMA3 NM_001127717 exon19 c.2256delA p.A752fs . . 312.0 20.0 199.0 0.0 . 397 . . Atlas-INDEL CCDC38 120935 hgsc.bcm.edu hg19 12 96292465 96292465 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC38 NM_182496 exon6 c.415delG p.D139fs . . 313.0 19.0 285.0 0.0 . 45 . . Atlas-INDEL TRIP10 9322 hgsc.bcm.edu hg19 19 6750606 6750606 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRIP10 NM_004240 exon13 c.1450delT p.S484fs . . 216.0 15.0 189.0 0.0 . 104 . . Atlas-INDEL ACTN1 87 hgsc.bcm.edu hg19 14 69345708 69345708 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ACTN1 NM_001102 exon19 c.2360delA p.Q787fs . . 176.0 11.0 147.0 0.0 . 77 . . Atlas-INDEL CREBRF 153222 hgsc.bcm.edu hg19 5 172537584 172537584 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_153607 exon6 c.1476delT p.P492fs . . 161.0 10.0 143.0 0.0 . . . . Atlas-INDEL MYT1L 23040 hgsc.bcm.edu hg19 2 1795691 1795691 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYT1L NM_015025 exon25 c.3504delT p.N1168fs . . 160.0 11.0 126.0 0.0 . 241 . . Atlas-INDEL IL1R2 7850 hgsc.bcm.edu hg19 2 102636130 102636130 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IL1R2 NM_004633 exon5 c.543delG p.E181fs . . 178.0 11.0 129.0 0.0 . 58 . . Atlas-INDEL ESF1 51575 hgsc.bcm.edu hg19 20 13695562 13695562 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ESF1 NM_001276380 exon14 c.2516delC p.T839fs . . 149.0 10.0 96.0 0.0 . 77 . . Atlas-INDEL TMEM173 340061 hgsc.bcm.edu hg19 5 138857961 138857961 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM173 NM_198282 exon6 c.654delC p.N218fs . . 151.0 43.0 170.0 0.0 . 19 . . Atlas-Indel,Pindel COL9A3 1299 hgsc.bcm.edu hg19 20 61458146 61458146 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL9A3 NM_001853 exon15 c.765delT p.P255fs . . 134.0 10.0 85.0 0.0 . 70 . . Atlas-INDEL CPO 130749 hgsc.bcm.edu hg19 2 207833909 207833909 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CPO NM_173077 exon9 c.873delA p.S291fs . . 148.0 10.0 119.0 0.0 . 42 . . Atlas-INDEL SEC14L4 284904 hgsc.bcm.edu hg19 22 30887947 30887947 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SEC14L4 NM_001161368 exon10 c.786delT p.G262fs . . 158.0 10.0 118.0 0.0 . 43 . . Atlas-INDEL MYOM3 127294 hgsc.bcm.edu hg19 1 24394840 24394840 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYOM3 NM_152372 exon26 c.3169delG p.D1057fs . . 165.0 10.0 147.0 0.0 . 131 . . Atlas-INDEL HAGHL 84264 hgsc.bcm.edu hg19 16 777988 777988 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HAGHL NM_032304 exon2 c.128delA p.E43fs . . 246.0 15.0 217.0 0.0 . 18 . . Atlas-INDEL ZNF195 7748 hgsc.bcm.edu hg19 11 3392251 3392251 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF195 NM_001256824 exon4 c.193delG p.E65fs . . 125.0 10.0 88.0 0.0 . 77 . . Atlas-INDEL TK1 7083 hgsc.bcm.edu hg19 17 76170874 76170874 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TK1 NM_003258 exon7 c.672delA p.P224fs . . 173.0 11.0 116.0 0.0 . 23 . . Atlas-INDEL MTRF1L 54516 hgsc.bcm.edu hg19 6 153315778 153315778 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MTRF1L NM_019041 exon4 c.558delT p.G186fs . . 121.0 10.0 123.0 0.0 . 21 . . Atlas-INDEL CDC23 8697 hgsc.bcm.edu hg19 5 137537124 137537124 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDC23 NM_004661 exon5 c.430delG p.G144fs . . 147.0 10.0 108.0 0.0 . 46 . . Atlas-INDEL DOCK1 1793 hgsc.bcm.edu hg19 10 129242484 129242484 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DOCK1 NM_001380 exon50 c.5290delT p.S1764fs . . 139.0 10.0 99.0 0.0 . 188 . . Atlas-INDEL ADAR 103 hgsc.bcm.edu hg19 1 154561054 154561054 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADAR NM_001111 exon10 c.2859delG p.K953fs . . 156.0 10.0 59.0 0.0 . 113 . . Atlas-INDEL TEP1 7011 hgsc.bcm.edu hg19 14 20846338 20846338 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TEP1 NM_007110 exon39 c.5567delT p.V1856fs . . 174.0 13.0 154.0 0.0 . 224 . . Atlas-INDEL NUP155 9631 hgsc.bcm.edu hg19 5 37309279 37309279 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NUP155 NM_153485 exon24 c.2720delT p.I907fs . . 150.0 11.0 166.0 0.0 . 116 . . Atlas-INDEL KDM1B 221656 hgsc.bcm.edu hg19 6 18197380 18197380 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KDM1B NM_153042 exon9 c.665delA p.Y222fs . . 159.0 10.0 196.0 0.0 . 58 . . Atlas-INDEL ZFHX3 463 hgsc.bcm.edu hg19 16 72993684 72993684 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZFHX3 NM_006885 exon2 c.362delA p.D121fs . . 179.0 14.0 166.0 0.0 . 404 . . Atlas-INDEL CKAP2L 150468 hgsc.bcm.edu hg19 2 113520086 113520086 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CKAP2L NM_152515 exon2 c.99delC p.N33fs . . 156.0 10.0 83.0 0.0 . 54 . . Atlas-INDEL ADAM33 80332 hgsc.bcm.edu hg19 20 3650236 3650236 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADAM33 NM_025220 exon20 c.2290delA p.M764fs . . 161.0 10.0 120.0 0.0 . 76 . . Atlas-INDEL LEPR 3953 hgsc.bcm.edu hg19 1 66064394 66064394 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LEPR NM_002303 exon8 c.900delT p.P300fs . . 205.0 15.0 179.0 0.0 . 284 . . Atlas-INDEL CAPN3 825 hgsc.bcm.edu hg19 15 42698130 42698130 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 CAPN3 NM_000070 exon15 c.1788delG p.K596fs . . 156.0 11.0 110.0 0.0 . 172 . . Atlas-INDEL ANXA8 653145 hgsc.bcm.edu hg19 10 47169805 47169805 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANXA8 NM_001271702 exon2 c.95delA p.K32fs . . 17.0 10.0 1.0 0.0 . 3 . . Atlas-INDEL ZFP106 64397 hgsc.bcm.edu hg19 15 42742679 42742679 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZFP106 NM_022473 exon2 c.1723delG p.G575fs . . 155.0 10.0 128.0 0.0 . 117 . . Atlas-INDEL FAM200B 285550 hgsc.bcm.edu hg19 4 15689819 15689819 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FAM200B NM_001145191 exon2 c.1218delC p.H406fs . . 153.0 10.0 136.0 0.0 . 56 . . Atlas-INDEL MBD5 55777 hgsc.bcm.edu hg19 2 149247480 149247480 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 MBD5 NM_018328 exon12 c.3579delC p.S1193fs . . 166.0 11.0 121.0 0.0 . 164 . . Atlas-INDEL FTSJ2 29960 hgsc.bcm.edu hg19 7 2274931 2274931 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FTSJ2 NM_013393 exon3 c.568delA p.T190fs . . 179.0 17.0 154.0 0.0 . 22 . . Atlas-INDEL PIGN 23556 hgsc.bcm.edu hg19 18 59752471 59752471 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PIGN NM_176787 exon26 c.2398delG p.G800fs . . 190.0 12.0 154.0 0.0 . 62 . . Atlas-INDEL ANKRD30A 91074 hgsc.bcm.edu hg19 10 37505286 37505286 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKRD30A NM_052997 exon32 c.2878delC p.Q960fs . . 363.0 25.0 277.0 0.0 . 448 . . Atlas-INDEL KRTAP5-2 440021 hgsc.bcm.edu hg19 11 1619161 1619161 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KRTAP5-2 NM_001004325 exon1 c.321delC p.G107fs . . 238.0 15.0 180.0 0.0 . 38 . . Atlas-INDEL PTPRN2 5799 hgsc.bcm.edu hg19 7 157926551 157926551 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTPRN2 NM_130843 exon9 c.1375delC p.Q459fs . . 128.0 10.0 97.0 0.0 . 243 . . Atlas-INDEL SLC14A1 6563 hgsc.bcm.edu hg19 18 43329808 43329808 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC14A1 NM_001146037 exon9 c.1229delC p.T410fs . . 248.0 15.0 198.0 0.0 . 84 . . Atlas-INDEL CHFR 55743 hgsc.bcm.edu hg19 12 133418144 133418144 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CHFR NM_001161344 exon18 c.1992delC p.N664fs . . 123.0 10.0 160.0 0.0 . 83 . . Atlas-INDEL POLG 5428 hgsc.bcm.edu hg19 15 89860003 89860003 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . POLG NM_001126131 exon23 c.3700delC p.R1234fs . . 168.0 11.0 192.0 0.0 . 75 . . Atlas-INDEL CKMT2 1160 hgsc.bcm.edu hg19 5 80552810 80552810 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CKMT2 NM_001825 exon7 c.745delA p.R249fs . . 206.0 15.0 185.0 0.0 . 44 . . Atlas-INDEL SH2D2A 9047 hgsc.bcm.edu hg19 1 156786488 156786488 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SH2D2A NM_003975 exon1 c.14delT p.L5fs . . 156.0 10.0 83.0 0.0 . 78 . . Atlas-INDEL MYCBP2 23077 hgsc.bcm.edu hg19 13 77798633 77798633 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYCBP2 NM_015057 exon20 c.2893delG p.G965fs . . 157.0 11.0 218.0 0.0 . 1029 . . Atlas-INDEL RAB11FIP3 9727 hgsc.bcm.edu hg19 16 538888 538888 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAB11FIP3 NM_014700 exon5 c.1152delC p.I384fs . . 140.0 12.0 117.0 0.0 . 31 . . Atlas-INDEL SHOX2 6474 hgsc.bcm.edu hg19 3 157820545 157820545 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SHOX2 NM_003030 exon3 c.550delG p.D184fs . . 230.0 14.0 212.0 0.0 . 84 . . Atlas-INDEL ZCWPW1 55063 hgsc.bcm.edu hg19 7 99998706 99998706 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZCWPW1 NM_017984 exon18 c.1879delC p.Q627fs . . 207.0 13.0 95.0 0.0 . 41 . . Atlas-INDEL LACE1 246269 hgsc.bcm.edu hg19 6 108668193 108668193 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 LACE1 NM_145315 exon3 c.364delC p.L122fs . . 142.0 10.0 124.0 0.0 . 30 . . Atlas-INDEL ZFP64 55734 hgsc.bcm.edu hg19 20 50713933 50713933 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZFP64 NM_199427 exon7 c.956delG p.R319fs . . 179.0 11.0 131.0 0.0 . 240 . . Atlas-INDEL PNPLA7 375775 hgsc.bcm.edu hg19 9 140356679 140356679 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PNPLA7 NM_001098537 exon31 c.3598delA p.I1200fs . . 166.0 10.0 165.0 0.0 . 124 . . Atlas-INDEL EIF4G3 8672 hgsc.bcm.edu hg19 1 21306905 21306905 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EIF4G3 NM_001198803 exon10 c.281delA p.Q94fs . . 192.0 12.0 117.0 0.0 . 300 . . Atlas-INDEL PCDHA7 56141 hgsc.bcm.edu hg19 5 140214086 140214086 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PCDHA7 NM_031852 exon1 c.117delT p.A39fs . . 182.0 11.0 155.0 0.0 . 367 . . Atlas-INDEL UTP15 84135 hgsc.bcm.edu hg19 5 72874641 72874641 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UTP15 NM_032175 exon10 c.1109delA p.H370fs . . 147.0 10.0 128.0 0.0 . 30 . . Atlas-INDEL ATG4C 84938 hgsc.bcm.edu hg19 1 63284957 63284957 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATG4C NM_178221 exon5 c.675delG p.G225fs . . 177.0 11.0 157.0 0.0 . 96 . . Atlas-INDEL SARDH 1757 hgsc.bcm.edu hg19 9 136559454 136559454 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SARDH NM_001134707 exon15 c.1848delC p.G616fs . . 273.0 17.0 225.0 0.0 . 112 . . Atlas-INDEL DYNC1LI1 51143 hgsc.bcm.edu hg19 3 32611883 32611883 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DYNC1LI1 NM_016141 exon2 c.176delG p.R59fs . . 180.0 11.0 135.0 0.0 . 23 . . Atlas-INDEL UTP11L 51118 hgsc.bcm.edu hg19 1 38483393 38483393 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UTP11L NM_016037 exon3 c.178delG p.E60fs . . 188.0 15.0 136.0 0.0 . 17 . . Atlas-INDEL OR2L5 81466 hgsc.bcm.edu hg19 1 248186140 248186140 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001258284 exon1 c.890delT p.M297fs . . 162.0 12.0 108.0 0.0 . . . . Atlas-INDEL CLIP4 79745 hgsc.bcm.edu hg19 2 29383293 29383293 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CLIP4 NM_024692 exon12 c.1493delT p.L498fs . . 166.0 11.0 133.0 0.0 . 69 . . Atlas-INDEL JAKMIP2 9832 hgsc.bcm.edu hg19 5 147021317 147021317 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . JAKMIP2 NM_001270934 exon8 c.1236delG p.K412fs . . 175.0 12.0 148.0 0.0 . 154 . . Atlas-INDEL RPRD1B 58490 hgsc.bcm.edu hg19 20 36676769 36676769 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RPRD1B NM_021215 exon3 c.300delT p.C100X . . 155.0 12.0 157.0 0.0 . 25 . . Atlas-INDEL DEPDC7 91614 hgsc.bcm.edu hg19 11 33050250 33050250 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DEPDC7 NM_001077242 exon4 c.693delT p.P231fs . . 166.0 10.0 132.0 0.0 . 94 . . Atlas-INDEL ESYT1 23344 hgsc.bcm.edu hg19 12 56525317 56525317 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ESYT1 NM_015292 exon6 c.770delT p.V257fs . . 193.0 12.0 168.0 0.0 . 84 . . Atlas-INDEL PGAP1 80055 hgsc.bcm.edu hg19 2 197737220 197737220 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PGAP1 NM_024989 exon18 c.1674delC p.N558fs . . 171.0 11.0 138.0 0.0 . 84 . . Atlas-INDEL CD97 976 hgsc.bcm.edu hg19 19 14508727 14508727 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CD97 NM_078481 exon8 c.798delG p.P266fs . . 197.0 13.0 149.0 0.0 . 86 . . Atlas-INDEL MLKL 197259 hgsc.bcm.edu hg19 16 74725195 74725195 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MLKL NM_152649 exon4 c.703delC p.L235fs . . 161.0 12.0 139.0 0.0 . 51 . . Atlas-INDEL ABI3BP 25890 hgsc.bcm.edu hg19 3 100585744 100585744 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABI3BP NM_015429 exon10 c.989delT p.I330fs . . 147.0 11.0 136.0 0.0 . 305 . . Atlas-INDEL EPHA3 2042 hgsc.bcm.edu hg19 3 89259454 89259454 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EPHA3 NM_005233 exon3 c.597delC p.F199fs . . 283.0 17.0 202.0 0.0 . 501 . . Atlas-INDEL ATP13A5 344905 hgsc.bcm.edu hg19 3 193002803 193002803 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP13A5 NM_198505 exon27 c.3127delG p.E1043fs . . 190.0 12.0 153.0 0.0 . 171 . . Atlas-INDEL SLC43A1 8501 hgsc.bcm.edu hg19 11 57259093 57259093 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC43A1 NM_001198810 exon10 c.1026delT p.N342fs . . 161.0 10.0 130.0 0.0 . 48 . . Atlas-INDEL PIK3C2B 5287 hgsc.bcm.edu hg19 1 204419065 204419065 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PIK3C2B NM_002646 exon14 c.2148delA p.P716fs . . 214.0 14.0 122.0 0.0 . 142 . . Atlas-INDEL PARVA 55742 hgsc.bcm.edu hg19 11 12499491 12499491 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PARVA NM_018222 exon4 c.514delC p.L172fs . . 173.0 11.0 133.0 0.0 . 27 . . Atlas-INDEL JPH4 84502 hgsc.bcm.edu hg19 14 24040276 24040276 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . JPH4 NM_001146028 exon5 c.1665delG p.P555fs . . 167.0 11.0 127.0 0.0 . 64 . . Atlas-INDEL UBR2 23304 hgsc.bcm.edu hg19 6 42637938 42637938 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UBR2 NM_015255 exon35 c.3989delT p.I1330fs . . 155.0 10.0 136.0 0.0 . 134 . . Atlas-INDEL PHYH 5264 hgsc.bcm.edu hg19 10 13336580 13336580 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHYH NM_006214 exon4 c.263delT p.I88fs . . 166.0 10.0 157.0 0.0 . 50 . . Atlas-INDEL TUB 7275 hgsc.bcm.edu hg19 11 8117161 8117161 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TUB NM_003320 exon6 c.678delT p.G226fs . . 216.0 13.0 174.0 0.0 . 71 . . Atlas-INDEL YTHDC2 64848 hgsc.bcm.edu hg19 5 112917159 112917159 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . YTHDC2 NM_022828 exon25 c.3399delA p.L1133fs . . 246.0 15.0 178.0 0.0 . 118 . . Atlas-INDEL VASH2 79805 hgsc.bcm.edu hg19 1 213146180 213146180 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . VASH2 NM_024749 exon4 c.623delT p.V208fs . . 243.0 17.0 153.0 0.0 . 55 . . Atlas-INDEL RGS11 8786 hgsc.bcm.edu hg19 16 323531 323531 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RGS11 NM_183337 exon8 c.533delA p.D178fs . . 197.0 13.0 201.0 0.0 . 29 . . Atlas-INDEL SENP7 57337 hgsc.bcm.edu hg19 3 101090875 101090875 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SENP7 NM_020654 exon7 c.774delA p.L258fs . . 166.0 10.0 109.0 0.0 . 170 . . Atlas-INDEL ZNF330 27309 hgsc.bcm.edu hg19 4 142154925 142154925 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF330 NM_014487 exon10 c.744delT p.S248fs . . 161.0 12.0 199.0 0.0 . 31 . . Atlas-INDEL GPCPD1 56261 hgsc.bcm.edu hg19 20 5550794 5550794 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPCPD1 NM_019593 exon12 c.1149delG p.K383fs . . 280.0 17.0 128.0 0.0 . 52 . . Atlas-INDEL DDX12P 440081 hgsc.bcm.edu hg19 12 9574420 9574420 + RNA DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . . . . . . . 258.0 16.0 222.0 0.0 . . . . Atlas-INDEL RGS6 9628 hgsc.bcm.edu hg19 14 72985093 72985093 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RGS6 NM_001204424 exon15 c.1125delA p.Q375fs . . 171.0 14.0 110.0 0.0 . 92 . . Atlas-INDEL ENTPD5 957 hgsc.bcm.edu hg19 14 74443074 74443074 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ENTPD5 NM_001249 exon9 c.596delA p.D199fs . . 147.0 10.0 109.0 0.0 . 26 . . Atlas-INDEL PTS 5805 hgsc.bcm.edu hg19 11 112101391 112101391 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTS NM_000317 exon4 c.228delC p.L76fs . . 136.0 10.0 82.0 0.0 . 7 . . Atlas-INDEL DYNC2H1 79659 hgsc.bcm.edu hg19 11 103158325 103158325 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DYNC2H1 NM_001080463 exon76 c.11106delT p.C3702X . . 230.0 15.0 185.0 0.0 . 246 . . Atlas-INDEL INF2 64423 hgsc.bcm.edu hg19 14 105174185 105174185 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 INF2 NM_001031714 exon8 c.1580delG p.S527fs . . 144.0 13.0 128.0 0.0 . 148 . . Atlas-Indel,Pindel DMXL1 1657 hgsc.bcm.edu hg19 5 118450216 118450216 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DMXL1 NM_005509 exon6 c.543delA p.E181fs . . 275.0 17.0 220.0 0.0 . 268 . . Atlas-INDEL NPR1 4881 hgsc.bcm.edu hg19 1 153654991 153654991 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NPR1 NM_000906 exon5 c.1188delG p.L396fs . . 182.0 11.0 77.0 0.0 . 104 . . Atlas-INDEL SPEM1 374768 hgsc.bcm.edu hg19 17 7324238 7324238 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPEM1 NM_199339 exon3 c.243delG p.Q81fs . . 119.0 11.0 165.0 0.0 . 41 . . Atlas-INDEL RTTN 25914 hgsc.bcm.edu hg19 18 67801730 67801730 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RTTN NM_173630 exon23 c.2934delG p.L978fs . . 142.0 10.0 119.0 0.0 . 184 . . Atlas-INDEL HGS 9146 hgsc.bcm.edu hg19 17 79660963 79660963 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HGS NM_004712 exon11 c.903delG p.A301fs . . 158.0 10.0 117.0 0.0 . 54 . . Atlas-INDEL CUL3 8452 hgsc.bcm.edu hg19 2 225368413 225368413 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CUL3 NM_001257198 exon9 c.1352delG p.S451fs . . 154.0 10.0 128.0 0.0 . 96 . . Atlas-INDEL PLCB1 23236 hgsc.bcm.edu hg19 20 8130989 8130989 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLCB1 NM_015192 exon2 c.147delG p.L49fs . . 181.0 11.0 124.0 0.0 . 394 . . Atlas-INDEL EPB41L4A 64097 hgsc.bcm.edu hg19 5 111545590 111545590 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EPB41L4A NM_022140 exon13 c.1178delG p.S393fs . . 152.0 10.0 89.0 0.0 . 130 . . Atlas-INDEL UTP23 84294 hgsc.bcm.edu hg19 8 117783923 117783923 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UTP23 NM_032334 exon3 c.591delG p.K197fs . . 151.0 10.0 129.0 0.0 . 38 . . Atlas-INDEL DGKE 8526 hgsc.bcm.edu hg19 17 54926133 54926133 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DGKE NM_003647 exon6 c.964delT p.W322fs . . 193.0 12.0 158.0 0.0 . 47 . . Atlas-INDEL SENP5 205564 hgsc.bcm.edu hg19 3 196626588 196626588 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SENP5 NM_152699 exon3 c.1564delG p.E522fs . . 175.0 11.0 190.0 0.0 . 68 . . Atlas-INDEL LIMK1 3984 hgsc.bcm.edu hg19 7 73523283 73523283 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LIMK1 NM_002314 exon10 c.1200delC p.I400fs . . 211.0 14.0 85.0 0.0 . 55 . . Atlas-INDEL HIVEP3 59269 hgsc.bcm.edu hg19 1 42050249 42050249 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HIVEP3 NM_024503 exon4 c.221delC p.T74fs . . 179.0 12.0 126.0 0.0 . 235 . . Atlas-INDEL OAF 220323 hgsc.bcm.edu hg19 11 120097608 120097608 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OAF NM_178507 exon3 c.449delA p.Q150fs . . 146.0 11.0 75.0 0.0 . 12 . . Atlas-INDEL MBD5 55777 hgsc.bcm.edu hg19 2 149243489 149243489 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MBD5 NM_018328 exon11 c.3023delA p.N1008fs . . 204.0 13.0 155.0 0.0 . 164 . . Atlas-INDEL SNTB1 6641 hgsc.bcm.edu hg19 8 121823695 121823695 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SNTB1 NM_021021 exon1 c.390delC p.G130fs . . 243.0 15.0 166.0 0.0 . 54 . . Atlas-INDEL PLSCR5 389158 hgsc.bcm.edu hg19 3 146311885 146311885 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLSCR5 NM_001085420 exon4 c.276delC p.N92fs . . 138.0 10.0 111.0 0.0 . 35 . . Atlas-INDEL ANKRD7 56311 hgsc.bcm.edu hg19 7 117876139 117876139 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKRD7 NM_019644 exon4 c.512delC p.P171fs . . 159.0 11.0 110.0 0.0 . 44 . . Atlas-INDEL PIDD 55367 hgsc.bcm.edu hg19 11 799358 799358 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PIDD NM_145886 exon16 c.2683delG p.A895fs . . 208.0 13.0 204.0 0.0 . 76 . . Atlas-INDEL UNC80 285175 hgsc.bcm.edu hg19 2 210682639 210682639 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UNC80 NM_032504 exon11 c.1655delA p.D552fs . . 152.0 10.0 108.0 0.0 . 280 . . Atlas-INDEL FBXL12 54850 hgsc.bcm.edu hg19 19 9922291 9922291 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FBXL12 NM_017703 exon3 c.263delA p.Q88fs . . 175.0 11.0 120.0 0.0 . 17 . . Atlas-INDEL PCSK2 5126 hgsc.bcm.edu hg19 20 17208071 17208071 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PCSK2 NM_002594 exon1 c.120delA p.K40fs . . 205.0 14.0 186.0 0.0 . 112 . . Atlas-INDEL HIAT1 64645 hgsc.bcm.edu hg19 1 100542770 100542770 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HIAT1 NM_033055 exon9 c.940delA p.I314fs . . 194.0 12.0 131.0 0.0 . 46 . . Atlas-INDEL DNMT3A 1788 hgsc.bcm.edu hg19 2 25505341 25505341 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNMT3A NM_175629 exon4 c.418delA p.K140fs . . 158.0 12.0 121.0 0.0 . 1807 . . Atlas-INDEL HDLBP 3069 hgsc.bcm.edu hg19 2 242170362 242170362 + Splice_Site DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HDLBP NM_005336 exon26 c.3289-2T>- . . . 149.0 11.0 118.0 0.0 . 118 . . Atlas-INDEL KIF21A 55605 hgsc.bcm.edu hg19 12 39688246 39688246 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIF21A NM_001173464 exon38 c.5006delA p.E1669fs . . 193.0 13.0 199.0 0.0 . 238 . . Atlas-INDEL FASTKD1 79675 hgsc.bcm.edu hg19 2 170387133 170387133 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FASTKD1 NM_024622 exon14 c.2407delC p.R803fs . . 285.0 20.0 230.0 0.0 . 86 . . Atlas-INDEL TDG 6996 hgsc.bcm.edu hg19 12 104370720 104370720 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TDG NM_003211 exon2 c.47delC p.A16fs . . 195.0 12.0 160.0 0.0 . 43 . . Atlas-INDEL ASH1L 55870 hgsc.bcm.edu hg19 1 155450361 155450361 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ASH1L NM_018489 exon3 c.2301delT p.P767fs . . 282.0 17.0 141.0 0.0 . 279 . . Atlas-INDEL TBC1D1 23216 hgsc.bcm.edu hg19 4 38097556 38097556 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TBC1D1 NM_001253912 exon16 c.2524delG p.E842fs . . 102.0 10.0 88.0 0.0 . 94 . . Atlas-INDEL SAMD4A 23034 hgsc.bcm.edu hg19 14 55231225 55231225 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SAMD4A NM_015589 exon7 c.1562delA p.Y521fs . . 121.0 10.0 81.0 0.0 . 68 . . Atlas-INDEL SUPT5H 6829 hgsc.bcm.edu hg19 19 39955533 39955533 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SUPT5H NM_003169 exon10 c.719delA p.E240fs . . 194.0 12.0 141.0 0.0 . 119 . . Atlas-INDEL UNC80 285175 hgsc.bcm.edu hg19 2 210837002 210837002 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UNC80 NM_032504 exon54 c.8135delT p.L2712X . . 315.0 19.0 279.0 0.0 . 280 . . Atlas-INDEL IQCC 55721 hgsc.bcm.edu hg19 1 32671421 32671421 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IQCC NM_001160042 exon1 c.138delT p.S46fs . . 221.0 15.0 164.0 0.0 . 46 . . Atlas-INDEL MFAP3 4238 hgsc.bcm.edu hg19 5 153432802 153432802 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MFAP3 NM_005927 exon3 c.617delT p.I206fs . . 136.0 10.0 119.0 0.0 . 20 . . Atlas-INDEL SLMAP 7871 hgsc.bcm.edu hg19 3 57902753 57902753 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLMAP NM_007159 exon19 c.2156delT p.L719X . . 246.0 15.0 219.0 0.0 . 46 . . Atlas-INDEL ZNF273 10793 hgsc.bcm.edu hg19 7 64388426 64388426 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF273 NM_021148 exon4 c.719delG p.G240fs . . 183.0 11.0 73.0 0.0 . 45 . . Atlas-INDEL NEK10 152110 hgsc.bcm.edu hg19 3 27332187 27332187 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NEK10 NM_199347 exon20 c.1665delA p.P555fs . . 141.0 11.0 89.0 0.0 . 271 . . Atlas-INDEL C2orf57 165100 hgsc.bcm.edu hg19 2 232457732 232457732 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 C2orf57,NS,carcinoma,0,1 C2orf57 NM_152614 exon1 c.69delG p.E23fs . . 159.0 10.0 117.0 0.0 . 35 . . Atlas-INDEL ITSN2 50618 hgsc.bcm.edu hg19 2 24516590 24516590 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITSN2 NM_147152 exon15 c.1691delG p.R564fs . . 196.0 14.0 161.0 0.0 . 224 . . Atlas-INDEL TNXB 7148 hgsc.bcm.edu hg19 6 32062950 32062950 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TNXB NM_019105 exon4 c.2262delC p.G754fs . . 157.0 10.0 118.0 0.0 . 553 . . Atlas-INDEL RCCD1 91433 hgsc.bcm.edu hg19 15 91500927 91500927 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RCCD1 NM_001017919 exon4 c.650delC p.A217fs . . 226.0 16.0 153.0 0.0 . 9 . . Atlas-INDEL MDN1 23195 hgsc.bcm.edu hg19 6 90382309 90382309 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MDN1 NM_014611 exon81 c.13588delG p.A4530fs . . 164.0 11.0 95.0 0.0 . 478 . . Atlas-INDEL PPP2R5D 5528 hgsc.bcm.edu hg19 6 42975751 42975751 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PPP2R5D NM_006245 exon7 c.804delG p.K268fs . . 190.0 12.0 140.0 0.0 . 47 . . Atlas-INDEL ANKRD32 84250 hgsc.bcm.edu hg19 5 93989080 93989080 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKRD32 NM_032290 exon8 c.985delG p.E329fs . . 213.0 16.0 133.0 0.0 . 117 . . Atlas-INDEL KIAA0355 9710 hgsc.bcm.edu hg19 19 34832365 34832365 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIAA0355 NM_014686 exon10 c.1525delA p.R509fs . . 200.0 12.0 160.0 0.0 . 105 . . Atlas-INDEL PKN2 5586 hgsc.bcm.edu hg19 1 89206728 89206728 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PKN2 NM_006256 exon2 c.105delC p.D35fs . . 135.0 11.0 108.0 0.0 . 109 . . Atlas-INDEL BRPF3 27154 hgsc.bcm.edu hg19 6 36179276 36179276 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BRPF3 NM_015695 exon7 c.2420delA p.Q807fs . . 140.0 10.0 141.0 0.0 . 93 . . Atlas-INDEL ANKRD42 338699 hgsc.bcm.edu hg19 11 82938845 82938845 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 ANKRD42,NS,carcinoma,0,1 ANKRD42 NM_182603 exon7 c.759delG p.K253fs . . 153.0 11.0 64.0 0.0 . 38 . . Atlas-INDEL ARMC8 25852 hgsc.bcm.edu hg19 3 137982594 137982594 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARMC8 NM_015396 exon14 c.1105delG p.E369fs . . 211.0 13.0 155.0 0.0 . 79 . . Atlas-INDEL BET3L 100128327 hgsc.bcm.edu hg19 6 116818120 116818120 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,2 BET3L NM_001139444 exon5 c.544delT p.X182E . . 135.0 12.0 104.0 0.0 . 18 . . Atlas-INDEL LAMA4 3910 hgsc.bcm.edu hg19 6 112450166 112450166 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LAMA4 NM_001105206 exon31 c.4246delG p.G1416fs . . 158.0 11.0 129.0 0.0 . 227 . . Atlas-INDEL NOP16 51491 hgsc.bcm.edu hg19 5 175812233 175812233 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NOP16 NM_016391 exon4 c.383delA p.E128fs . . 136.0 11.0 101.0 0.0 . 26 . . Atlas-INDEL SMAP1 60682 hgsc.bcm.edu hg19 6 71566736 71566736 + Splice_Site DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMAP1 NM_001044305 exon9 c.961+2A>- . . . 135.0 10.0 128.0 0.0 . 77 . . Atlas-INDEL C11orf73 51501 hgsc.bcm.edu hg19 11 86056631 86056631 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C11orf73 NM_016401 exon5 c.544delG p.E182fs . . 125.0 10.0 58.0 0.0 . 9 . . Atlas-INDEL SNTB2 6645 hgsc.bcm.edu hg19 16 69333538 69333538 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SNTB2 NM_006750 exon6 c.1390delG p.E464fs . . 148.0 14.0 108.0 0.0 . 22 . . Atlas-INDEL CCDC85C 317762 hgsc.bcm.edu hg19 14 99983523 99983523 + Splice_Site DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC85C NM_001144995 exon5 c.976-2C>- . . . 140.0 12.0 120.0 0.0 . 3 . . Atlas-INDEL SCN1A 6323 hgsc.bcm.edu hg19 2 166903448 166903448 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCN1A NM_001165964 exon9 c.1210delG p.V404fs . . 183.0 13.0 131.0 0.0 . 641 . . Atlas-Indel,Pindel ARID2 196528 hgsc.bcm.edu hg19 12 46243493 46243493 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARID2 NM_152641 exon14 c.1845delA p.Q615fs . . 180.0 11.0 175.0 0.0 . 311 . . Atlas-INDEL ARSJ 79642 hgsc.bcm.edu hg19 4 114899693 114899693 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARSJ NM_024590 exon1 c.299delC p.T100fs . . 154.0 10.0 175.0 0.0 . 55 . . Atlas-INDEL ZNF148 7707 hgsc.bcm.edu hg19 3 125007010 125007010 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 ZNF148,NS,carcinoma,+1,1 ZNF148 NM_021964 exon5 c.397delC p.Q133fs . . 126.0 10.0 105.0 0.0 . 84 . . Atlas-INDEL GAMT 2593 hgsc.bcm.edu hg19 19 1398959 1398959 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GAMT NM_138924 exon5 c.527delA p.E176fs . . 285.0 20.0 197.0 0.0 . 39 . . Atlas-INDEL DICER1 23405 hgsc.bcm.edu hg19 14 95562262 95562262 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DICER1 NM_001271282 exon23 c.4996delT p.F1666fs . . 166.0 11.0 139.0 0.0 . 181 . . Atlas-INDEL RAB1A 5861 hgsc.bcm.edu hg19 2 65316146 65316146 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAB1A NM_004161 exon5 c.348delT p.N116fs . . 153.0 10.0 122.0 0.0 . 15 . . Atlas-INDEL CLDN2 9075 hgsc.bcm.edu hg19 X 106171549 106171549 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CLDN2 NM_001171092 exon2 c.90delG p.W30X . . 116.0 10.0 93.0 0.0 . 22 . . Atlas-INDEL GLRX2 51022 hgsc.bcm.edu hg19 1 193066820 193066820 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GLRX2 NM_016066 exon3 c.258delG p.K86fs . . 187.0 12.0 113.0 0.0 . 9 . . Atlas-INDEL PIAS2 9063 hgsc.bcm.edu hg19 18 44444168 44444168 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PIAS2 NM_173206 exon3 c.544delG p.A182fs . . 146.0 10.0 102.0 0.0 . 85 . . Atlas-INDEL TPRN 286262 hgsc.bcm.edu hg19 9 140087119 140087119 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TPRN NM_001128228 exon2 c.1751delG p.S584fs . . 164.0 12.0 122.0 0.0 . 28 . . Atlas-INDEL NR1H3 10062 hgsc.bcm.edu hg19 11 47283563 47283563 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NR1H3 NM_001251934 exon7 c.999delC p.A333fs . . 162.0 10.0 95.0 0.0 . 52 . . Atlas-INDEL TEX13B 56156 hgsc.bcm.edu hg19 X 107224619 107224619 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TEX13B NM_031273 exon3 c.631delG p.A211fs . . 170.0 11.0 134.0 0.0 . 40 . . Atlas-INDEL NUMB 8650 hgsc.bcm.edu hg19 14 73753987 73753987 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NUMB NM_001005744 exon9 c.487delG p.A163fs . . 164.0 10.0 147.0 0.0 . 56 . . Atlas-INDEL C6orf170 221322 hgsc.bcm.edu hg19 6 121624805 121624805 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C6orf170 NM_152730 exon9 c.1039delG p.A347fs . . 131.0 10.0 112.0 0.0 . 146 . . Atlas-INDEL UNC45A 55898 hgsc.bcm.edu hg19 15 91488144 91488144 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UNC45A NM_018671 exon9 c.1049delT p.V350fs . . 178.0 11.0 142.0 0.0 . 57 . . Atlas-INDEL AP4M1 9179 hgsc.bcm.edu hg19 7 99701731 99701731 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AP4M1 NM_004722 exon7 c.559delG p.V187fs . . 171.0 11.0 81.0 0.0 . 39 . . Atlas-INDEL ANKRD12 23253 hgsc.bcm.edu hg19 18 9275668 9275668 + Splice_Site DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKRD12 NM_001083625 exon10 c.5838+2A>- . . . 160.0 10.0 168.0 0.0 . 167 . . Atlas-INDEL AK7 122481 hgsc.bcm.edu hg19 14 96916175 96916175 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AK7 NM_152327 exon9 c.906delG p.Q302fs . . 157.0 13.0 92.0 0.0 . 69 . . Atlas-INDEL NT5DC3 51559 hgsc.bcm.edu hg19 12 104208851 104208851 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NT5DC3 NM_001031701 exon2 c.258delC p.F86fs . . 148.0 12.0 136.0 0.0 . 113 . . Atlas-INDEL ADAMTS1 9510 hgsc.bcm.edu hg19 21 28210011 28210011 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADAMTS1 NM_006988 exon9 c.2792delG p.R931fs . . 204.0 14.0 257.0 0.0 . 131 . . Atlas-INDEL TTN 7273 hgsc.bcm.edu hg19 2 179528765 179528765 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTN NM_001267550 exon169 c.36342delG p.K12114fs . . 215.0 13.0 186.0 0.0 . 18412 . . Atlas-INDEL RAD51AP2 729475 hgsc.bcm.edu hg19 2 17698475 17698475 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAD51AP2 NM_001099218 exon1 c.1209delG p.L403fs . . 180.0 14.0 131.0 0.0 . 134 . . Atlas-INDEL SERPINF1 5176 hgsc.bcm.edu hg19 17 1680585 1680585 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SERPINF1 NM_002615 exon8 c.1101delT p.D367fs . . 163.0 10.0 239.0 0.0 . 31 . . Atlas-INDEL SMEK2 57223 hgsc.bcm.edu hg19 2 55791450 55791450 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMEK2 NM_001122964 exon15 c.2260delG p.A754fs . . 178.0 11.0 128.0 0.0 . 86 . . Atlas-INDEL TMPRSS11D 9407 hgsc.bcm.edu hg19 4 68725283 68725283 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMPRSS11D NM_004262 exon2 c.123delA p.L41fs . . 144.0 10.0 112.0 0.0 . 68 . . Atlas-INDEL NEK4 6787 hgsc.bcm.edu hg19 3 52745814 52745814 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NEK4 NM_003157 exon16 c.2506delG p.E836fs . . 163.0 12.0 176.0 0.0 . 51 . . Atlas-INDEL BLZF1 8548 hgsc.bcm.edu hg19 1 169351458 169351458 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 BLZF1 NM_003666 exon6 c.955delC p.Q319fs . . 170.0 12.0 65.0 0.0 . 57 . . Atlas-INDEL KDM2B 84678 hgsc.bcm.edu hg19 12 121880092 121880092 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KDM2B NM_032590 exon19 c.3153delG p.P1051fs . . 205.0 21.0 157.0 0.0 . 218 . . Atlas-INDEL ZKSCAN7 55888 hgsc.bcm.edu hg19 3 44606986 44606986 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_018651 exon3 c.430delG p.A144fs . . 164.0 11.0 123.0 0.0 . . . . Atlas-INDEL KANSL1L 151050 hgsc.bcm.edu hg19 2 210887743 210887743 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_152519 exon15 c.2895delG p.K965fs . . 241.0 15.0 178.0 0.0 . . . . Atlas-INDEL TUBA8 51807 hgsc.bcm.edu hg19 22 18609172 18609172 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TUBA8 NM_018943 exon4 c.426delT p.G142fs . . 169.0 11.0 134.0 0.0 . 36 . . Atlas-INDEL ITGB6 3694 hgsc.bcm.edu hg19 2 160958277 160958277 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITGB6 NM_000888 exon15 c.2338delC p.Q780fs . . 162.0 11.0 135.0 0.0 . 68 . . Atlas-INDEL FHAD1 114827 hgsc.bcm.edu hg19 1 15615974 15615974 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 FHAD1 NM_052929 exon4 c.379delG p.A127fs . . 158.0 11.0 162.0 0.0 . 78 . . Atlas-INDEL CCDC13 152206 hgsc.bcm.edu hg19 3 42754657 42754657 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC13 NM_144719 exon14 c.1871delC p.T624fs . . 170.0 11.0 124.0 0.0 . 71 . . Atlas-INDEL FARP2 9855 hgsc.bcm.edu hg19 2 242373660 242373660 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FARP2 NM_014808 exon10 c.954delC p.T318fs . . 170.0 12.0 119.0 0.0 . 92 . . Atlas-INDEL IFI44L 10964 hgsc.bcm.edu hg19 1 79101136 79101136 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IFI44L NM_006820 exon5 c.837delT p.I279fs . . 132.0 10.0 103.0 0.0 . 93 . . Atlas-INDEL MAGI3 260425 hgsc.bcm.edu hg19 1 114162410 114162410 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAGI3 NM_152900 exon8 c.1128delG p.R376fs . . 213.0 14.0 184.0 0.0 . 181 . . Atlas-INDEL RAD51D 5892 hgsc.bcm.edu hg19 17 33434027 33434027 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAD51D NM_001142571 exon5 c.521delC p.T174fs . . 122.0 10.0 103.0 0.0 . 53 . . Atlas-INDEL SULF1 23213 hgsc.bcm.edu hg19 8 70550813 70550813 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SULF1 NM_001128205 exon20 c.2360delA p.N787fs . . 177.0 11.0 120.0 0.0 . 153 . . Atlas-INDEL TTC13 79573 hgsc.bcm.edu hg19 1 231044702 231044702 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTC13 NM_024525 exon21 c.2375delT p.I792fs . . 214.0 13.0 145.0 0.0 . 74 . . Atlas-INDEL MACROD2 140733 hgsc.bcm.edu hg19 20 13976431 13976431 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MACROD2 NM_080676 exon1 c.21delG p.K7fs . . 160.0 10.0 130.0 0.0 . 34 . . Atlas-INDEL DFNB59 494513 hgsc.bcm.edu hg19 2 179325894 179325894 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DFNB59 NM_001042702 exon7 c.951delC p.F317fs . . 152.0 10.0 114.0 0.0 . 37 . . Atlas-INDEL AGRN 375790 hgsc.bcm.edu hg19 1 987127 987127 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AGRN NM_198576 exon33 c.5582delC p.A1861fs . . 152.0 12.0 232.0 0.0 . 110 . . Atlas-INDEL SPPL3 121665 hgsc.bcm.edu hg19 12 121222293 121222293 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_139015 exon4 c.295delA p.T99fs . . 165.0 12.0 106.0 0.0 . . . . Atlas-INDEL OSBPL8 114882 hgsc.bcm.edu hg19 12 76749732 76749732 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OSBPL8 NM_020841 exon24 c.2608delG p.D870fs . . 147.0 12.0 119.0 0.0 . 86 . . Atlas-INDEL SEPT2 4735 hgsc.bcm.edu hg19 2 242275390 242275390 + Splice_Site DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SEPT2 NM_006155 exon5 c.218-1A>- . . . 153.0 14.0 86.0 0.0 . 33 . . Atlas-INDEL CXorf40A 91966 hgsc.bcm.edu hg19 X 148627384 148627384 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CXorf40A NM_178124 exon4 c.207delG p.Q69fs . . 201.0 16.0 163.0 0.0 . 15 . . Atlas-INDEL TMEM108 66000 hgsc.bcm.edu hg19 3 133099911 133099911 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM108 NM_023943 exon4 c.1355delA p.E452fs . . 226.0 14.0 210.0 0.0 . 67 . . Atlas-INDEL ADRM1 11047 hgsc.bcm.edu hg19 20 60882434 60882434 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADRM1 NM_175573 exon6 c.548delT p.L183fs . . 159.0 10.0 115.0 0.0 . 28 . . Atlas-INDEL GARNL3 84253 hgsc.bcm.edu hg19 9 130116628 130116628 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GARNL3 NM_032293 exon19 c.1697delA p.E566fs . . 155.0 10.0 126.0 0.0 . 83 . . Atlas-INDEL ZNF385C 201181 hgsc.bcm.edu hg19 17 40189831 40189831 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF385C NM_001242704 exon2 c.87delG p.P29fs . . 154.0 10.0 151.0 0.0 . 7 . . Atlas-INDEL PDHX 8050 hgsc.bcm.edu hg19 11 34953022 34953022 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PDHX NM_003477 exon2 c.231delG p.L77fs . . 211.0 14.0 184.0 0.0 . 40 . . Atlas-INDEL SVIL 6840 hgsc.bcm.edu hg19 10 29822101 29822101 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SVIL NM_021738 exon8 c.1196delA p.Q399fs . . 197.0 13.0 168.0 0.0 . 226 . . Atlas-INDEL KCNQ2 3785 hgsc.bcm.edu hg19 20 62059777 62059777 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 KCNQ2,rectum,carcinoma,0,1 KCNQ2 NM_172106 exon10 c.1161delG p.P387fs . . 195.0 13.0 143.0 0.0 . 201 . . Atlas-INDEL PPAT 5471 hgsc.bcm.edu hg19 4 57272752 57272752 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PPAT NM_002703 exon3 c.312delT p.N104fs . . 164.0 12.0 136.0 0.0 . 41 . . Atlas-INDEL FHOD3 80206 hgsc.bcm.edu hg19 18 34335198 34335198 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FHOD3 NM_025135 exon22 c.3823delG p.E1275fs . . 154.0 10.0 133.0 0.0 . 210 . . Atlas-INDEL USP47 55031 hgsc.bcm.edu hg19 11 11977603 11977603 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . USP47 NM_017944 exon27 c.3744delG p.M1248fs . . 150.0 11.0 137.0 0.0 . 91 . . Atlas-INDEL RARS 5917 hgsc.bcm.edu hg19 5 167937675 167937675 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RARS NM_002887 exon12 c.1435delG p.E479fs . . 149.0 10.0 144.0 0.0 . 58 . . Atlas-INDEL EPHA7 2045 hgsc.bcm.edu hg19 6 94120235 94120235 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EPHA7 NM_004440 exon3 c.817delG p.G273fs . . 166.0 13.0 142.0 0.0 . 251 . . Atlas-INDEL SEC14L1 6397 hgsc.bcm.edu hg19 17 75192380 75192380 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SEC14L1 NM_001204408 exon10 c.805delA p.T269fs . . 179.0 11.0 101.0 0.0 . 81 . . Atlas-INDEL YTHDC2 64848 hgsc.bcm.edu hg19 5 112926912 112926912 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . YTHDC2 NM_022828 exon27 c.3999delA p.V1333fs . . 162.0 11.0 127.0 0.0 . 118 . . Atlas-INDEL SLC12A2 6558 hgsc.bcm.edu hg19 5 127514330 127514330 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 SLC12A2,NS,carcinoma,0,1 SLC12A2 NM_001046 exon22 c.3048delG p.Q1016fs . . 212.0 13.0 158.0 0.0 . 119 . . Atlas-INDEL HCFC2 29915 hgsc.bcm.edu hg19 12 104490206 104490206 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HCFC2 NM_013320 exon12 c.1734delG p.P578fs . . 155.0 10.0 173.0 0.0 . 94 . . Atlas-INDEL ZMPSTE24 10269 hgsc.bcm.edu hg19 1 40751681 40751681 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 ZMPSTE24,NS,carcinoma,0,1 ZMPSTE24 NM_005857 exon8 c.1038delC p.V346fs . . 260.0 16.0 210.0 0.0 . 50 . . Atlas-INDEL WIPF1 7456 hgsc.bcm.edu hg19 2 175436765 175436765 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WIPF1 NM_003387 exon5 c.769delA p.S257fs . . 194.0 12.0 135.0 0.0 . 88 . . Atlas-INDEL MAGEE1 57692 hgsc.bcm.edu hg19 X 75650522 75650522 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAGEE1 NM_020932 exon1 c.2198delC p.S733X . . 164.0 10.0 124.0 0.0 . 236 . . Atlas-INDEL ITGA9 3680 hgsc.bcm.edu hg19 3 37845344 37845344 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ITGA9 NM_002207 exon27 c.2919delG p.E973fs . . 233.0 17.0 187.0 0.0 . 98 . . Atlas-INDEL TM9SF2 9375 hgsc.bcm.edu hg19 13 100191778 100191778 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TM9SF2 NM_004800 exon7 c.794delT p.I265fs . . 131.0 12.0 152.0 0.0 . 52 . . Atlas-INDEL XYLT2 64132 hgsc.bcm.edu hg19 17 48435819 48435819 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . XYLT2 NM_022167 exon10 c.2192delT p.L731fs . . 151.0 10.0 139.0 0.0 . 51 . . Atlas-INDEL TMEM171 134285 hgsc.bcm.edu hg19 5 72424240 72424240 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM171 NM_001161342 exon3 c.663delA p.P221fs . . 220.0 15.0 196.0 0.0 . 41 . . Atlas-INDEL GLS2 27165 hgsc.bcm.edu hg19 12 56867277 56867277 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GLS2 NM_013267 exon13 c.1327delA p.N443fs . . 115.0 10.0 70.0 0.0 . 42 . . Atlas-INDEL KIAA1841 84542 hgsc.bcm.edu hg19 2 61304238 61304238 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIAA1841 NM_032506 exon6 c.614delT p.I205fs . . 183.0 11.0 145.0 0.0 . 95 . . Atlas-INDEL CDC42EP4 23580 hgsc.bcm.edu hg19 17 71281984 71281984 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDC42EP4 NM_012121 exon2 c.657delT p.G219fs . . 173.0 11.0 177.0 0.0 . 19 . . Atlas-INDEL MGA 23269 hgsc.bcm.edu hg19 15 42057143 42057143 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MGA NM_001164273 exon23 c.7803delA p.Q2601fs . . 194.0 12.0 146.0 0.0 . 264 . . Atlas-INDEL NOS3 4846 hgsc.bcm.edu hg19 7 150693569 150693569 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NOS3 NM_001160111 exon3 c.347delG p.G116fs . . 257.0 17.0 148.0 0.0 . 131 . . Atlas-INDEL AGFG1 3267 hgsc.bcm.edu hg19 2 228389615 228389615 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AGFG1 NM_001135187 exon5 c.677delA p.H226fs . . 214.0 13.0 175.0 0.0 . 80 . . Atlas-INDEL ZNF354C 30832 hgsc.bcm.edu hg19 5 178507066 178507066 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF354C NM_014594 exon5 c.1632delA p.R544fs . . 183.0 12.0 139.0 0.0 . 77 . . Atlas-INDEL ABCB9 23457 hgsc.bcm.edu hg19 12 123416813 123416813 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCB9 NM_019625 exon11 c.1967delC p.A656fs . . 141.0 10.0 120.0 0.0 . 50 . . Atlas-INDEL SFXN2 118980 hgsc.bcm.edu hg19 10 104486829 104486829 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SFXN2 NM_178858 exon3 c.246delT p.T82fs . . 161.0 11.0 210.0 0.0 . 40 . . Atlas-INDEL RNF144A 9781 hgsc.bcm.edu hg19 2 7137130 7137130 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RNF144A NM_014746 exon3 c.72delT p.L24fs . . 187.0 12.0 143.0 0.0 . 38 . . Atlas-INDEL MUT 4594 hgsc.bcm.edu hg19 6 49416619 49416619 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MUT NM_000255 exon7 c.1355delT p.M452fs . . 162.0 11.0 116.0 0.0 . 70 . . Atlas-INDEL VPS4B 9525 hgsc.bcm.edu hg19 18 61067829 61067829 + Frame_Shift_Del DEL A A - rs369884834 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . VPS4B NM_004869 exon6 c.593delC p.S198X . . 150.0 10.0 151.0 0.0 . 33 . . Atlas-INDEL MFSD9 84804 hgsc.bcm.edu hg19 2 103334977 103334978 + Frame_Shift_Ins INS - - G novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MFSD9 NM_032718 exon6 c.1327_1328insC p.S443fs . . 133.0 23.0 106.0 0.0 . 56 . . Atlas-Indel,Pindel RAD9A 5883 hgsc.bcm.edu hg19 11 67164988 67164988 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAD9A NM_004584 exon11 c.1133delG p.G378fs . . 257.0 16.0 146.0 0.0 . 15 . . Atlas-INDEL COBL 23242 hgsc.bcm.edu hg19 7 51287562 51287562 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 COBL NM_015198 exon2 c.122delA p.H41fs . . 169.0 16.0 146.0 0.0 . 167 . . Atlas-INDEL GPR114 221188 hgsc.bcm.edu hg19 16 57597883 57597883 + Frame_Shift_Del DEL T T - rs35837636 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPR114 NM_153837 exon5 c.420delC p.H140fs . . 173.0 13.0 130.0 0.0 . 52 . . Atlas-INDEL NUP210L 91181 hgsc.bcm.edu hg19 1 154031143 154031143 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NUP210L NM_001159484 exon21 c.2878delA p.T960fs . . 149.0 10.0 82.0 0.0 . 181 . . Atlas-INDEL BRWD3 254065 hgsc.bcm.edu hg19 X 79938011 79938011 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BRWD3 NM_153252 exon38 c.4351delC p.R1451fs . . 149.0 10.0 163.0 0.0 . 251 . . Atlas-INDEL ATF3 467 hgsc.bcm.edu hg19 1 212788594 212788594 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATF3 NM_001030287 exon2 c.230delC p.T77fs . . 164.0 11.0 78.0 0.0 . 22 . . Atlas-INDEL TUBGCP4 27229 hgsc.bcm.edu hg19 15 43675520 43675520 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TUBGCP4 NM_014444 exon7 c.540delT p.H180fs . . 150.0 10.0 159.0 0.0 . 48 . . Atlas-INDEL ABCC8 6833 hgsc.bcm.edu hg19 11 17449417 17449417 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCC8 NM_000352 exon15 c.2114delG p.R705fs . . 210.0 13.0 176.0 0.0 . 170 . . Atlas-INDEL PHF21A 51317 hgsc.bcm.edu hg19 11 45957241 45957241 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHF21A NM_001101802 exon17 c.1732delC p.Q578fs . . 145.0 10.0 161.0 0.0 . 107 . . Atlas-INDEL ZNF805 390980 hgsc.bcm.edu hg19 19 57766049 57766049 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF805 NM_001023563 exon4 c.1861delA p.T621fs . . 205.0 13.0 129.0 0.0 . 30 . . Atlas-INDEL DST 667 hgsc.bcm.edu hg19 6 56336022 56336022 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DST NM_015548 exon76 c.14335delT p.Y4779fs . . 158.0 11.0 142.0 0.0 . 1427 . . Atlas-INDEL KLRC4-KLRK1 0 hgsc.bcm.edu hg19 12 10539504 10539504 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001199805 exon8 c.147delT p.N49fs . . 183.0 11.0 121.0 0.0 . . . . Atlas-INDEL NBPF16 728936 hgsc.bcm.edu hg19 1 148744584 148744584 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NBPF16 NM_001102663 exon6 c.730delT p.S244fs . . 160.0 11.0 74.0 0.0 . 7 . . Atlas-INDEL ANGPT1 284 hgsc.bcm.edu hg19 8 108348381 108348381 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANGPT1 NM_001199859 exon3 c.573delC p.N191fs . . 175.0 12.0 107.0 0.0 . 111 . . Atlas-INDEL SYT3 84258 hgsc.bcm.edu hg19 19 51133356 51133356 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SYT3 NM_032298 exon3 c.748delC p.P250fs . . 145.0 10.0 106.0 0.0 . 85 . . Atlas-INDEL PNMA5 114824 hgsc.bcm.edu hg19 X 152159005 152159005 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PNMA5 NM_001103150 exon2 c.1139delA p.Q380fs . . 144.0 10.0 93.0 0.0 . 63 . . Atlas-INDEL TIFAB 497189 hgsc.bcm.edu hg19 5 134785335 134785335 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TIFAB NM_001099221 exon2 c.296delT p.L99fs . . 168.0 11.0 129.0 0.0 . 23 . . Atlas-INDEL CAT 847 hgsc.bcm.edu hg19 11 34470817 34470817 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CAT NM_001752 exon2 c.144delG p.G48fs . . 164.0 10.0 106.0 0.0 . 42 . . Atlas-INDEL PPAP2B 8613 hgsc.bcm.edu hg19 1 56990119 56990119 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PPAP2B NM_003713 exon3 c.406delG p.G136fs . . 151.0 10.0 109.0 0.0 . 30 . . Atlas-INDEL PLCB3 5331 hgsc.bcm.edu hg19 11 64031017 64031017 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLCB3 NM_000932 exon20 c.2402delA p.E801fs . . 169.0 11.0 79.0 0.0 . 103 . . Atlas-INDEL SCAF1 58506 hgsc.bcm.edu hg19 19 50156035 50156035 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCAF1 NM_021228 exon7 c.2388delG p.R796fs . . 159.0 13.0 113.0 0.0 . 78 . . Atlas-INDEL SYT11 23208 hgsc.bcm.edu hg19 1 155851197 155851197 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SYT11 NM_152280 exon4 c.1193delT p.L398fs . . 258.0 17.0 132.0 0.0 . 55 . . Atlas-INDEL HRG 3273 hgsc.bcm.edu hg19 3 186392941 186392941 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 HRG,rectum,carcinoma,+1,1 HRG NM_000412 exon6 c.702delG p.P234fs . . 249.0 17.0 164.0 0.0 . 81 . . Atlas-INDEL TBC1D23 55773 hgsc.bcm.edu hg19 3 100002490 100002490 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TBC1D23 NM_018309 exon4 c.310delC p.L104fs . . 139.0 11.0 122.0 0.0 . 133 . . Atlas-INDEL MYO3A 53904 hgsc.bcm.edu hg19 10 26359089 26359089 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYO3A NM_017433 exon13 c.1219delA p.I407fs . . 174.0 11.0 149.0 0.0 . 371 . . Atlas-INDEL TMEM139 135932 hgsc.bcm.edu hg19 7 142983605 142983605 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM139 NM_001242773 exon4 c.333delA p.P111fs . . 163.0 11.0 101.0 0.0 . 18 . . Atlas-INDEL HNRNPL 3191 hgsc.bcm.edu hg19 19 39329068 39329068 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HNRNPL NM_001533 exon10 c.1527delG p.P509fs . . 150.0 10.0 139.0 0.0 . 67 . . Atlas-INDEL CD82 3732 hgsc.bcm.edu hg19 11 44639810 44639810 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CD82 NM_002231 exon8 c.536delA p.K179fs . . 163.0 10.0 129.0 0.0 . 27 . . Atlas-INDEL SP100 6672 hgsc.bcm.edu hg19 2 231339124 231339124 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SP100 NM_001206701 exon17 c.1561delG p.E521fs . . 229.0 18.0 166.0 0.0 . 167 . . Atlas-INDEL ARHGEF35 445328 hgsc.bcm.edu hg19 7 143884040 143884040 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARHGEF35 NM_001003702 exon2 c.1438delC p.L480fs . . 201.0 14.0 103.0 0.0 . 11 . . Atlas-INDEL AGTPBP1 23287 hgsc.bcm.edu hg19 9 88204546 88204546 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 AGTPBP1,NS,carcinoma,0,1 AGTPBP1 NM_015239 exon20 c.2500delC p.R834fs . . 142.0 10.0 93.0 0.0 . 128 . . Atlas-INDEL PHGDH 26227 hgsc.bcm.edu hg19 1 120266001 120266001 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PHGDH NM_006623 exon3 c.292delA p.T98fs . . 239.0 16.0 209.0 0.0 . 51 . . Atlas-INDEL FILIP1 27145 hgsc.bcm.edu hg19 6 76124421 76124421 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FILIP1 NM_015687 exon2 c.269delA p.E90fs . . 143.0 10.0 112.0 0.0 . 173 . . Atlas-INDEL PCSK9 255738 hgsc.bcm.edu hg19 1 55523861 55523861 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PCSK9 NM_174936 exon8 c.1332delG p.L444fs . . 171.0 12.0 168.0 0.0 . 76 . . Atlas-INDEL NRG3 10718 hgsc.bcm.edu hg19 10 84711320 84711320 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NRG3 NM_001010848 exon5 c.1149delC p.F383fs . . 212.0 13.0 232.0 0.0 . 301 . . Atlas-INDEL TRABD 80305 hgsc.bcm.edu hg19 22 50632890 50632890 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TRABD NM_025204 exon4 c.233delT p.V78fs . . 161.0 10.0 184.0 0.0 . 21 . . Atlas-INDEL MGA 23269 hgsc.bcm.edu hg19 15 41961559 41961559 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MGA NM_001080541 exon2 c.466delG p.V156fs . . 203.0 15.0 171.0 0.0 . 264 . . Atlas-INDEL C2CD5 9847 hgsc.bcm.edu hg19 12 22666279 22666279 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_014802 exon9 c.988delC p.P330fs . . 142.0 10.0 115.0 0.0 . . . . Atlas-INDEL RYR1 6261 hgsc.bcm.edu hg19 19 39025415 39025415 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 RYR1 NM_000540 exon79 c.11314delC p.R3772fs . . 194.0 12.0 132.0 0.0 . 708 . . Atlas-INDEL PPIL1 51645 hgsc.bcm.edu hg19 6 36823778 36823778 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 PPIL1,caecum,carcinoma,0,1 PPIL1 NM_016059 exon4 c.313delC p.P105fs . . 161.0 11.0 132.0 0.0 . 6 . . Atlas-INDEL CYTH4 27128 hgsc.bcm.edu hg19 22 37707049 37707049 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CYTH4 NM_013385 exon10 c.828delG p.W276X . . 178.0 13.0 140.0 0.0 . 51 . . Atlas-INDEL POLQ 10721 hgsc.bcm.edu hg19 3 121238748 121238748 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . POLQ NM_199420 exon9 c.1439delG p.R480fs . . 169.0 11.0 116.0 0.0 . 273 . . Atlas-INDEL LINGO2 158038 hgsc.bcm.edu hg19 9 27950495 27950495 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LINGO2 NM_152570 exon7 c.176delC p.T59fs . . 232.0 15.0 352.0 0.0 . 244 . . Atlas-INDEL EXOC7 23265 hgsc.bcm.edu hg19 17 74099763 74099763 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EXOC7 NM_001145298 exon1 c.12delA p.P4fs . . 170.0 12.0 104.0 0.0 . 47 . . Atlas-INDEL ASTE1 28990 hgsc.bcm.edu hg19 3 130743653 130743653 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ASTE1 NM_014065 exon3 c.499delG p.D167fs . . 172.0 11.0 121.0 0.0 . 67 . . Atlas-INDEL OTOF 9381 hgsc.bcm.edu hg19 2 26724640 26724640 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OTOF NM_194248 exon8 c.748delC p.R250fs . . 195.0 12.0 144.0 0.0 . 524 . . Atlas-INDEL RRH 10692 hgsc.bcm.edu hg19 4 110754368 110754368 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RRH NM_006583 exon2 c.179delC p.T60fs . . 154.0 10.0 190.0 0.0 . 24 . . Atlas-INDEL ANKRD17 26057 hgsc.bcm.edu hg19 4 73985933 73985933 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKRD17 NM_032217 exon21 c.3972delA p.L1324fs . . 162.0 10.0 145.0 0.0 . 214 . . Atlas-INDEL FASTKD3 79072 hgsc.bcm.edu hg19 5 7867769 7867769 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,2 FASTKD3 NM_024091 exon2 c.429delG p.K143fs . . 226.0 14.0 198.0 0.0 . 88 . . Atlas-INDEL HCN1 348980 hgsc.bcm.edu hg19 5 45262631 45262631 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HCN1 NM_021072 exon8 c.2066delA p.Q689fs . . 182.0 11.0 158.0 0.0 . 298 . . Atlas-INDEL YJEFN3 374887 hgsc.bcm.edu hg19 19 19645920 19645920 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . YJEFN3 NM_198537 exon4 c.395delT p.V132fs . . 146.0 13.0 102.0 0.0 . 10 . . Atlas-INDEL NR4A2 4929 hgsc.bcm.edu hg19 2 157184439 157184439 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NR4A2 NM_006186 exon5 c.1083delG p.P361fs . . 200.0 12.0 138.0 0.0 . 82 . . Atlas-INDEL SP2 6668 hgsc.bcm.edu hg19 17 45994350 45994350 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SP2 NM_003110 exon3 c.912delG p.V304fs . . 166.0 10.0 124.0 0.0 . 38 . . Atlas-INDEL ATP1B4 23439 hgsc.bcm.edu hg19 X 119509268 119509268 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATP1B4 NM_001142447 exon5 c.603delT p.C201fs . . 170.0 13.0 138.0 0.0 . 61 . . Atlas-INDEL PCNX 22990 hgsc.bcm.edu hg19 14 71522272 71522272 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PCNX NM_014982 exon25 c.4628delG p.R1543fs . . 192.0 12.0 171.0 0.0 . 198 . . Atlas-INDEL COG2 22796 hgsc.bcm.edu hg19 1 230800279 230800279 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COG2 NM_007357 exon5 c.430delG p.E144fs . . 153.0 12.0 77.0 0.0 . 61 . . Atlas-INDEL RBFOX1 54715 hgsc.bcm.edu hg19 16 7680656 7680656 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 RBFOX1_ENST00000550418,colon,carcinoma,0,3 RBFOX1 NM_145891 exon8 c.787delG p.A263fs . . 213.0 15.0 154.0 0.0 . 341 . . Atlas-INDEL ZNF17 7565 hgsc.bcm.edu hg19 19 57932806 57932806 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF17 NM_006959 exon3 c.1945delC p.Q649fs . . 177.0 11.0 120.0 0.0 . 49 . . Atlas-INDEL KCNU1 157855 hgsc.bcm.edu hg19 8 36793121 36793121 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KCNU1 NM_001031836 exon27 c.3132delT p.Y1044X . . 180.0 15.0 132.0 0.0 . 359 . . Atlas-INDEL LOC100132707 0 hgsc.bcm.edu hg19 7 154720408 154720408 + RNA DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . . . . . . . 213.0 13.0 157.0 0.0 . . . . Atlas-INDEL MTRR 4552 hgsc.bcm.edu hg19 5 7900115 7900115 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MTRR NM_024010 exon15 c.2121delG p.M707fs . . 132.0 10.0 150.0 0.0 . 74 . . Atlas-INDEL MIR147B 100126311 hgsc.bcm.edu hg19 15 45725320 45725320 + RNA DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . . . . . . . 203.0 13.0 186.0 0.0 . . . . Atlas-INDEL EZH2 2146 hgsc.bcm.edu hg19 7 148515025 148515025 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . EZH2 NM_004456 exon10 c.1185delA p.G395fs . . 336.0 23.0 190.0 0.0 . 823 . . Atlas-INDEL TNFRSF14 8764 hgsc.bcm.edu hg19 1 2492097 2492097 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TNFRSF14 NM_003820 exon5 c.494delG p.C165fs . . 154.0 11.0 146.0 0.0 . 89 . . Atlas-INDEL L3MBTL1 26013 hgsc.bcm.edu hg19 20 42162009 42162009 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . L3MBTL1 NM_032107 exon13 c.1397delA p.H466fs . . 148.0 10.0 97.0 0.0 . 105 . . Atlas-INDEL PA2G4 5036 hgsc.bcm.edu hg19 12 56498590 56498590 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PA2G4 NM_006191 exon1 c.68delT p.M23fs . . 164.0 11.0 166.0 0.0 . 24 . . Atlas-INDEL HELZ2 85441 hgsc.bcm.edu hg19 20 62193204 62193204 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001037335 exon12 c.6664delT p.S2222fs . . 139.0 11.0 109.0 0.0 . . . . Atlas-INDEL DDX20 11218 hgsc.bcm.edu hg19 1 112309341 112309341 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DDX20 NM_007204 exon11 c.2294delG p.S765fs . . 198.0 12.0 140.0 0.0 . 50 . . Atlas-INDEL ZCCHC24 219654 hgsc.bcm.edu hg19 10 81154153 81154153 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZCCHC24 NM_153367 exon3 c.492delG p.K164fs . . 166.0 11.0 196.0 0.0 . 22 . . Atlas-INDEL HEBP1 50865 hgsc.bcm.edu hg19 12 13142225 13142225 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HEBP1 NM_015987 exon2 c.204delC p.G68fs . . 275.0 17.0 199.0 0.0 . 16 . . Atlas-INDEL TEK 7010 hgsc.bcm.edu hg19 9 27157926 27157926 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 TEK_ENST00000380036,caecum,carcinoma,0,1 TEK NM_000459 exon2 c.149delG p.R50fs . . 133.0 10.0 184.0 0.0 . 250 . . Atlas-INDEL AKT1 207 hgsc.bcm.edu hg19 14 105240253 105240253 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AKT1 NM_001014432 exon9 c.699delC p.G233fs . . 173.0 11.0 168.0 0.0 . 379 . . Atlas-INDEL RAPGEF2 9693 hgsc.bcm.edu hg19 4 160273871 160273871 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAPGEF2 NM_014247 exon21 c.3416delA p.N1139fs . . 179.0 12.0 218.0 0.0 . 171 . . Atlas-INDEL CHEK1 1111 hgsc.bcm.edu hg19 11 125505404 125505404 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 CHEK1 NM_001114122 exon7 c.693delG p.W231X . . 129.0 10.0 99.0 0.0 . 44 . . Atlas-INDEL ANO1 55107 hgsc.bcm.edu hg19 11 70017033 70017033 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANO1 NM_018043 exon22 c.2237delT p.F746fs . . 244.0 15.0 135.0 0.0 . 156 . . Atlas-INDEL PPM1F 9647 hgsc.bcm.edu hg19 22 22277539 22277539 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PPM1F NM_014634 exon8 c.1292delA p.Q431fs . . 182.0 11.0 128.0 0.0 . 34 . . Atlas-INDEL ATAD2B 54454 hgsc.bcm.edu hg19 2 24087705 24087705 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ATAD2B NM_017552 exon11 c.1279delG p.E427fs . . 163.0 13.0 107.0 0.0 . 110 . . Atlas-INDEL PTTG1 9232 hgsc.bcm.edu hg19 5 159854837 159854837 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTTG1 NM_004219 exon5 c.485delG p.G162fs . . 164.0 10.0 131.0 0.0 . 15 . . Atlas-INDEL BFSP2 8419 hgsc.bcm.edu hg19 3 133119111 133119111 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BFSP2 NM_003571 exon1 c.183delA p.A61fs . . 153.0 11.0 188.0 0.0 . 48 . . Atlas-INDEL COL11A2 1302 hgsc.bcm.edu hg19 6 33152022 33152022 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL11A2 NM_080680 exon8 c.1020delT p.P340fs . . 102.0 11.0 72.0 0.0 . 124 . . Atlas-INDEL SIL1 64374 hgsc.bcm.edu hg19 5 138286953 138286953 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SIL1 NM_022464 exon9 c.937delC p.L313fs . . 183.0 11.0 144.0 0.0 . 31 . . Atlas-INDEL RAPH1 65059 hgsc.bcm.edu hg19 2 204305064 204305064 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RAPH1 NM_213589 exon14 c.2850delT p.P950fs . . 152.0 10.0 98.0 0.0 . 118 . . Atlas-INDEL NOP56 10528 hgsc.bcm.edu hg19 20 2634016 2634016 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NOP56 NM_006392 exon3 c.184delG p.E62fs . . 250.0 16.0 201.0 0.0 . 73 . . Atlas-INDEL CFHR5 81494 hgsc.bcm.edu hg19 1 196953169 196953169 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 CFHR5,right_upper_lobe,carcinoma,0,1 CFHR5 NM_030787 exon3 c.331delC p.Q111fs . . 194.0 12.0 103.0 0.0 . 150 . . Atlas-INDEL FAM170A 340069 hgsc.bcm.edu hg19 5 118969957 118969957 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FAM170A NM_182761 exon3 c.513delT p.T171fs . . 145.0 10.0 132.0 0.0 . 47 . . Atlas-INDEL ABCC6 368 hgsc.bcm.edu hg19 16 16292011 16292011 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCC6 NM_001171 exon10 c.1206delG p.K402fs . . 155.0 12.0 149.0 0.0 . 110 . . Atlas-INDEL ZNF354B 117608 hgsc.bcm.edu hg19 5 178311121 178311121 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF354B NM_058230 exon5 c.1667delG p.G556fs . . 127.0 31.0 107.0 0.0 . 67 . . Atlas-Indel,Pindel ADAMTS14 140766 hgsc.bcm.edu hg19 10 72496514 72496514 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADAMTS14 NM_139155 exon10 c.1572delG p.G524fs . . 147.0 10.0 152.0 0.0 . 148 . . Atlas-INDEL COL7A1 1294 hgsc.bcm.edu hg19 3 48610625 48610625 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . COL7A1 NM_000094 exon84 c.6697delG p.G2233fs . . 129.0 10.0 83.0 0.0 . 320 . . Atlas-INDEL ARID3C 138715 hgsc.bcm.edu hg19 9 34625744 34625744 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARID3C NM_001017363 exon2 c.387delG p.K129fs . . 163.0 10.0 144.0 0.0 . 33 . . Atlas-INDEL BIRC2 329 hgsc.bcm.edu hg19 11 102239232 102239232 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BIRC2 NM_001256163 exon6 c.1318delG p.E440fs . . 150.0 10.0 97.0 0.0 . 51 . . Atlas-INDEL WDR72 256764 hgsc.bcm.edu hg19 15 54004983 54004983 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WDR72 NM_182758 exon7 c.698delC p.S233fs . . 229.0 14.0 203.0 0.0 . 177 . . Atlas-INDEL FARSA 2193 hgsc.bcm.edu hg19 19 13033615 13033615 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FARSA NM_004461 exon13 c.1475delT p.L492fs . . 169.0 11.0 113.0 0.0 . 46 . . Atlas-INDEL SCN10A 6336 hgsc.bcm.edu hg19 3 38793887 38793887 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SCN10A NM_006514 exon11 c.1579delC p.P527fs . . 151.0 10.0 121.0 0.0 . 359 . . Atlas-INDEL SMARCA5 8467 hgsc.bcm.edu hg19 4 144442631 144442631 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SMARCA5 NM_003601 exon3 c.301delC p.L101fs . . 106.0 12.0 125.0 0.0 . 73 . . Atlas-INDEL ZNF416 55659 hgsc.bcm.edu hg19 19 58084579 58084579 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF416 NM_017879 exon4 c.694delC p.H232fs . . 199.0 13.0 117.0 0.0 . 50 . . Atlas-INDEL NIM1 0 hgsc.bcm.edu hg19 5 43245927 43245927 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_153361 exon2 c.49delG p.A17fs . . 170.0 11.0 170.0 0.0 . . . . Atlas-INDEL MYO10 4651 hgsc.bcm.edu hg19 5 16763789 16763789 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYO10 NM_012334 exon13 c.1403delC p.S468fs . . 232.0 14.0 211.0 0.0 . 198 . . Atlas-INDEL LRRC40 55631 hgsc.bcm.edu hg19 1 70618181 70618181 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRRC40 NM_017768 exon12 c.1375delA p.N459fs . . 237.0 16.0 189.0 0.0 . 66 . . Atlas-INDEL SPATA22 84690 hgsc.bcm.edu hg19 17 3352342 3352342 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SPATA22 NM_032598 exon6 c.432delT p.N144fs . . 138.0 11.0 158.0 0.0 . 49 . . Atlas-INDEL MAMDC4 158056 hgsc.bcm.edu hg19 9 139753286 139753286 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAMDC4 NM_206920 exon23 c.2936delT p.M979fs . . 110.0 10.0 112.0 0.0 . 117 . . Atlas-INDEL MYOM1 8736 hgsc.bcm.edu hg19 18 3129514 3129514 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYOM1 NM_003803 exon18 c.2511delA p.G837fs . . 233.0 15.0 182.0 0.0 . 192 . . Atlas-INDEL LRP4 4038 hgsc.bcm.edu hg19 11 46903431 46903431 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LRP4 NM_002334 exon20 c.2637delT p.G879fs . . 157.0 10.0 129.0 0.0 . 160 . . Atlas-INDEL SNAP91 9892 hgsc.bcm.edu hg19 6 84368767 84368767 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SNAP91 NM_001242794 exon6 c.498delG p.K166fs . . 129.0 10.0 118.0 0.0 . 199 . . Atlas-INDEL NAALAD2 10003 hgsc.bcm.edu hg19 11 89911108 89911108 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NAALAD2 NM_005467 exon16 c.1680delT p.F560fs . . 243.0 18.0 162.0 0.0 . 113 . . Atlas-INDEL ACAN 176 hgsc.bcm.edu hg19 15 89398305 89398305 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ACAN NM_001135 exon12 c.2488delT p.S830fs . . 184.0 12.0 129.0 0.0 . 220 . . Atlas-INDEL CD55 1604 hgsc.bcm.edu hg19 1 207510725 207510725 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CD55 NM_001114752 exon8 c.1030delA p.T344fs . . 261.0 17.0 161.0 0.0 . 55 . . Atlas-INDEL OR56B1 387748 hgsc.bcm.edu hg19 11 5758619 5758619 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OR56B1 NM_001005180 exon1 c.872delT p.I291fs . . 146.0 10.0 120.0 0.0 . 38 . . Atlas-INDEL SLC11A2 4891 hgsc.bcm.edu hg19 12 51386667 51386667 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC11A2 NM_001174125 exon12 c.1211delG p.W404fs . . 152.0 10.0 110.0 0.0 . 51 . . Atlas-INDEL KIF5B 3799 hgsc.bcm.edu hg19 10 32320045 32320045 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KIF5B NM_004521 exon14 c.1538delC p.T513fs . . 145.0 11.0 121.0 0.0 . 81 . . Atlas-INDEL INTS2 57508 hgsc.bcm.edu hg19 17 59946495 59946495 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . INTS2 NM_020748 exon23 c.3169delG p.A1057fs . . 160.0 10.0 133.0 0.0 . 89 . . Atlas-INDEL IL21R 50615 hgsc.bcm.edu hg19 16 27441412 27441412 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IL21R NM_181079 exon3 c.85delG p.A29fs . . 135.0 10.0 144.0 0.0 . 95 . . Atlas-INDEL ARL2BP 23568 hgsc.bcm.edu hg19 16 57282542 57282542 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ARL2BP NM_012106 exon3 c.193delA p.I65fs . . 163.0 10.0 105.0 0.0 . 20 . . Atlas-INDEL SMG1 23049 hgsc.bcm.edu hg19 16 18865999 18865999 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 SMG1,colon,carcinoma,0,1 SMG1 NM_015092 exon30 c.4463delC p.T1488fs . . 196.0 13.0 158.0 0.0 . 401 . . Atlas-INDEL HAUS6 54801 hgsc.bcm.edu hg19 9 19094365 19094365 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HAUS6 NM_017645 exon3 c.254delG p.S85fs . . 211.0 13.0 279.0 0.0 . 66 . . Atlas-INDEL OVCH2 341277 hgsc.bcm.edu hg19 11 7721868 7721868 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OVCH2 NM_198185 exon7 c.877delT p.W293fs . . 208.0 13.0 184.0 0.0 . 47 . . Atlas-INDEL CPA4 51200 hgsc.bcm.edu hg19 7 129944394 129944394 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CPA4 NM_016352 exon5 c.460delG p.E154fs . . 188.0 12.0 169.0 0.0 . 47 . . Atlas-INDEL TAC3 6866 hgsc.bcm.edu hg19 12 57406176 57406176 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TAC3 NM_013251 exon6 c.354delG p.P118fs . . 146.0 10.0 104.0 0.0 . 11 . . Atlas-INDEL SLC4A4 8671 hgsc.bcm.edu hg19 4 72363374 72363374 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 SLC4A4_ENST00000425175,caecum,carcinoma,0,2 SLC4A4 NM_001134742 exon16 c.2130delG p.L710fs . . 132.0 11.0 101.0 0.0 . 269 . . Atlas-INDEL DMPK 1760 hgsc.bcm.edu hg19 19 46283130 46283130 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DMPK NM_001081563 exon1 c.189delA p.P63fs . . 107.0 10.0 70.0 0.0 . 74 . . Atlas-INDEL TMEM69 51249 hgsc.bcm.edu hg19 1 46158890 46158890 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM69 NM_016486 exon3 c.56delC p.S19fs . . 165.0 10.0 136.0 0.0 . 20 . . Atlas-INDEL CPEB4 80315 hgsc.bcm.edu hg19 5 173317577 173317577 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CPEB4 NM_030627 exon1 c.840delA p.K280fs . . 140.0 11.0 92.0 0.0 . 54 . . Atlas-INDEL CGNL1 84952 hgsc.bcm.edu hg19 15 57743740 57743740 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CGNL1 NM_001252335 exon6 c.1845delG p.Q615fs . . 179.0 11.0 154.0 0.0 . 125 . . Atlas-INDEL NXPE4 54827 hgsc.bcm.edu hg19 11 114450944 114450944 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001077639 exon5 c.1010delT p.M337fs . . 293.0 18.0 254.0 0.0 . . . . Atlas-INDEL RUFY2 55680 hgsc.bcm.edu hg19 10 70139221 70139221 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RUFY2 NM_017987 exon12 c.1271delC p.T424fs . . 151.0 11.0 125.0 0.0 . 58 . . Atlas-INDEL ABCG5 64240 hgsc.bcm.edu hg19 2 44047175 44047175 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCG5 NM_022436 exon11 c.1529delA p.H510fs . . 150.0 10.0 148.0 0.0 . 72 . . Atlas-INDEL CDKAL1 54901 hgsc.bcm.edu hg19 6 21108646 21108646 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDKAL1 NM_017774 exon13 c.1250delC p.T417fs . . 139.0 11.0 106.0 0.0 . 55 . . Atlas-INDEL GPC5 2262 hgsc.bcm.edu hg19 13 92797194 92797194 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 GPC5,NS,carcinoma,0,1 GPC5 NM_004466 exon7 c.1512delC p.C504fs . . 160.0 10.0 169.0 0.0 . 140 . . Atlas-INDEL YLPM1 56252 hgsc.bcm.edu hg19 14 75264632 75264632 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . YLPM1 NM_019589 exon5 c.2631delT p.F877fs . . 194.0 12.0 146.0 0.0 . 298 . . Atlas-INDEL DCAF16 54876 hgsc.bcm.edu hg19 4 17805674 17805674 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DCAF16 NM_017741 exon3 c.92delA p.E31fs . . 146.0 10.0 105.0 0.0 . 19 . . Atlas-INDEL AGPAT9 84803 hgsc.bcm.edu hg19 4 84465717 84465717 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AGPAT9 NM_032717 exon2 c.169delA p.T57fs . . 166.0 11.0 117.0 0.0 . 41 . . Atlas-INDEL STAT6 6778 hgsc.bcm.edu hg19 12 57499025 57499025 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . STAT6 NM_003153 exon9 c.911delC p.A304fs . . 133.0 10.0 98.0 0.0 . 69 . . Atlas-INDEL UTP15 84135 hgsc.bcm.edu hg19 5 72864105 72864105 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UTP15 NM_032175 exon3 c.135delC p.D45fs . . 249.0 17.0 171.0 0.0 . 30 . . Atlas-INDEL SETD1A 9739 hgsc.bcm.edu hg19 16 30990582 30990582 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SETD1A NM_014712 exon14 c.3474delG p.L1158fs . . 246.0 18.0 212.0 0.0 . 143 . . Atlas-INDEL TESK1 7016 hgsc.bcm.edu hg19 9 35607647 35607647 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TESK1 NM_006285 exon6 c.688delC p.R230fs . . 119.0 11.0 125.0 0.0 . 46 . . Atlas-INDEL GRIA3 2892 hgsc.bcm.edu hg19 X 122528855 122528855 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GRIA3 NM_000828 exon6 c.786delT p.H262fs . . 200.0 12.0 155.0 0.0 . 386 . . Atlas-INDEL TSPAN18 90139 hgsc.bcm.edu hg19 11 44931375 44931375 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TSPAN18 NM_130783 exon4 c.182delT p.M61fs . . 149.0 11.0 110.0 0.0 . 38 . . Atlas-INDEL ABCB7 22 hgsc.bcm.edu hg19 X 74282215 74282215 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ABCB7 NM_004299 exon14 c.1887delA p.P629fs . . 166.0 13.0 126.0 0.0 . 69 . . Atlas-Indel,Pindel AQR 9716 hgsc.bcm.edu hg19 15 35182501 35182501 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AQR NM_014691 exon24 c.2597delT p.I866fs . . 152.0 10.0 145.0 0.0 . 139 . . Atlas-INDEL ZNF493 284443 hgsc.bcm.edu hg19 19 21588652 21588652 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF493 NM_145326 exon3 c.249delA p.K83fs . . 103.0 11.0 74.0 0.0 . 178 . . Atlas-INDEL PKN1 5585 hgsc.bcm.edu hg19 19 14561143 14561143 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PKN1 NM_213560 exon5 c.641delT p.L214fs . . 227.0 16.0 219.0 0.0 . 99 . . Atlas-INDEL GPKOW 27238 hgsc.bcm.edu hg19 X 48970804 48970804 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPKOW NM_015698 exon10 c.1284delA p.P428fs . . 156.0 10.0 103.0 0.0 . 38 . . Atlas-INDEL RMND5A 64795 hgsc.bcm.edu hg19 2 86992185 86992185 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RMND5A NM_022780 exon5 c.556delC p.Q186fs . . 214.0 13.0 173.0 0.0 . 33 . . Atlas-INDEL SETX 23064 hgsc.bcm.edu hg19 9 135173586 135173586 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SETX NM_015046 exon13 c.5663delG p.R1888fs . . 174.0 11.0 155.0 0.0 . 234 . . Atlas-INDEL PLXNC1 10154 hgsc.bcm.edu hg19 12 94642030 94642030 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PLXNC1 NM_005761 exon14 c.2619delC p.S873fs . . 148.0 10.0 131.0 0.0 . 135 . . Atlas-INDEL VIPR2 7434 hgsc.bcm.edu hg19 7 158902515 158902515 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . VIPR2 NM_003382 exon3 c.248delA p.Y83fs . . 145.0 11.0 75.0 0.0 . 53 . . Atlas-INDEL WDR17 116966 hgsc.bcm.edu hg19 4 177052791 177052791 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . WDR17 NM_170710 exon8 c.1071delA p.A357fs . . 173.0 12.0 223.0 0.0 . 198 . . Atlas-INDEL PLEKHG4 25894 hgsc.bcm.edu hg19 16 67316441 67316441 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 PLEKHG4,NS,carcinoma,0,1 PLEKHG4 NM_001129729 exon10 c.1288delC p.R430fs . . 156.0 10.0 110.0 0.0 . 94 . . Atlas-INDEL FCER1A 2205 hgsc.bcm.edu hg19 1 159275825 159275825 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FCER1A NM_002001 exon5 c.378delG p.Q126fs . . 199.0 12.0 123.0 0.0 . 74 . . Atlas-INDEL RIPK1 8737 hgsc.bcm.edu hg19 6 3077159 3077159 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RIPK1 NM_003804 exon1 c.101delG p.C34fs . . 181.0 11.0 129.0 0.0 . 56 . . Atlas-INDEL DHTKD1 55526 hgsc.bcm.edu hg19 10 12154919 12154919 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DHTKD1 NM_018706 exon13 c.2174delA p.E725fs . . 154.0 12.0 111.0 0.0 . 104 . . Atlas-INDEL CFH 3075 hgsc.bcm.edu hg19 1 196706674 196706674 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CFH NM_000186 exon17 c.2665delG p.E889fs . . 171.0 11.0 104.0 0.0 . 251 . . Atlas-INDEL LBR 3930 hgsc.bcm.edu hg19 1 225607149 225607149 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LBR NM_194442 exon5 c.457delT p.F153fs . . 159.0 10.0 80.0 0.0 . 54 . . Atlas-INDEL PLAU 5328 hgsc.bcm.edu hg19 10 75673438 75673438 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 PLAU NM_002658 exon7 c.601delC p.R201fs . . 264.0 16.0 189.0 0.0 . 47 . . Atlas-INDEL DMXL1 1657 hgsc.bcm.edu hg19 5 118483090 118483090 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DMXL1 NM_005509 exon17 c.2835delG p.L945fs . . 216.0 14.0 167.0 0.0 . 268 . . Atlas-INDEL TMEM108 66000 hgsc.bcm.edu hg19 3 133098904 133098904 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TMEM108 NM_023943 exon4 c.348delG p.G116fs . . 181.0 11.0 153.0 0.0 . 67 . . Atlas-INDEL DNAJC2 27000 hgsc.bcm.edu hg19 7 102953447 102953447 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DNAJC2 NM_014377 exon16 c.1739delT p.I580fs . . 176.0 12.0 152.0 0.0 . 46 . . Atlas-INDEL HDC 3067 hgsc.bcm.edu hg19 15 50549687 50549687 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 HDC,NS,carcinoma,0,1 HDC NM_002112 exon4 c.377delT p.M126fs . . 164.0 16.0 108.0 0.0 . 86 . . Atlas-INDEL HTR6 3362 hgsc.bcm.edu hg19 1 19992674 19992674 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HTR6 NM_000871 exon1 c.427delG p.A143fs . . 192.0 13.0 185.0 0.0 . 38 . . Atlas-INDEL ACTR8 93973 hgsc.bcm.edu hg19 3 53902877 53902877 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ACTR8 NM_022899 exon13 c.1745delG p.R582fs . . 163.0 10.0 123.0 0.0 . 56 . . Atlas-INDEL ANKRD20A3 441425 hgsc.bcm.edu hg19 9 42380200 42380200 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_001012419 exon6 c.786delG p.E262fs . . 156.0 10.0 129.0 0.0 . . . . Atlas-INDEL PRRC2C 23215 hgsc.bcm.edu hg19 1 171527040 171527040 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_015172 exon19 c.5782delG p.A1928fs . . 279.0 19.0 186.0 0.0 . . . . Atlas-INDEL FOXI1 2299 hgsc.bcm.edu hg19 5 169533034 169533034 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FOXI1 NM_012188 exon1 c.72delG p.E24fs . . 294.0 18.0 296.0 0.0 . 70 . . Atlas-INDEL ZNF8 7554 hgsc.bcm.edu hg19 19 58806805 58806805 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF8 NM_021089 exon4 c.1630delC p.Q544fs . . 117.0 10.0 90.0 0.0 . 60 . . Atlas-INDEL ZNF813 126017 hgsc.bcm.edu hg19 19 53995078 53995078 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF813 NM_001004301 exon4 c.1591delG p.V531fs . . 164.0 11.0 108.0 0.0 . 81 . . Atlas-INDEL GPCPD1 56261 hgsc.bcm.edu hg19 20 5560674 5560674 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GPCPD1 NM_019593 exon7 c.454delT p.L152X . . 202.0 13.0 104.0 0.0 . 52 . . Atlas-INDEL CYP2B6 1555 hgsc.bcm.edu hg19 19 41510031 41510031 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 CYP2B6,NS,malignant_melanoma,0,1 CYP2B6 NM_000767 exon2 c.296delG p.G99fs . . 147.0 10.0 120.0 0.0 . 79 . . Atlas-INDEL FOXN4 121643 hgsc.bcm.edu hg19 12 109725737 109725737 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FOXN4 NM_213596 exon5 c.381delC p.G127fs . . 182.0 11.0 139.0 0.0 . 74 . . Atlas-INDEL TNPO2 30000 hgsc.bcm.edu hg19 19 12825735 12825735 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TNPO2 NM_013433 exon9 c.791delA p.Q264fs . . 148.0 10.0 152.0 0.0 . 108 . . Atlas-INDEL LETM1 3954 hgsc.bcm.edu hg19 4 1818594 1818594 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LETM1 NM_012318 exon12 c.1792delT p.Y598fs . . 316.0 20.0 258.0 0.0 . 48 . . Atlas-INDEL DTX3L 151636 hgsc.bcm.edu hg19 3 122284754 122284754 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 DTX3L,colon,carcinoma,0,2 DTX3L NM_138287 exon2 c.235delG p.E79fs . . 149.0 13.0 135.0 0.0 . 59 . . Atlas-INDEL TAS2R13 50838 hgsc.bcm.edu hg19 12 11061232 11061232 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TAS2R13 NM_023920 exon1 c.667delA p.R223fs . . 216.0 14.0 171.0 0.0 . 29 . . Atlas-INDEL LAMA3 3909 hgsc.bcm.edu hg19 18 21425024 21425024 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LAMA3 NM_001127717 exon30 c.3654delC p.H1218fs . . 166.0 10.0 126.0 0.0 . 397 . . Atlas-INDEL VPS13D 55187 hgsc.bcm.edu hg19 1 12439636 12439636 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . VPS13D NM_015378 exon57 c.11175delT p.H3725fs . . 155.0 10.0 133.0 0.0 . 316 . . Atlas-INDEL SELENBP1 8991 hgsc.bcm.edu hg19 1 151341939 151341939 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SELENBP1 NM_001258289 exon3 c.280delA p.K94fs . . 214.0 13.0 102.0 0.0 . 44 . . Atlas-INDEL STOML1 9399 hgsc.bcm.edu hg19 15 74284520 74284520 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . STOML1 NM_004809 exon1 c.46delG p.D16fs . . 155.0 11.0 188.0 0.0 . 22 . . Atlas-INDEL FAM194A 131831 hgsc.bcm.edu hg19 3 150421477 150421477 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FAM194A NM_152394 exon1 c.210delT p.P70fs . . 183.0 11.0 175.0 0.0 . 91 . . Atlas-INDEL FKBP5 2289 hgsc.bcm.edu hg19 6 35587912 35587912 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 FKBP5_ENST00000542713,NS,carcinoma,0,2 FKBP5 NM_001145775 exon5 c.391delG p.E131fs . . 139.0 11.0 105.0 0.0 . 64 . . Atlas-INDEL AMIGO2 347902 hgsc.bcm.edu hg19 12 47471280 47471280 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AMIGO2 NM_181847 exon2 c.1507delA p.K503fs . . 173.0 11.0 133.0 0.0 . 50 . . Atlas-INDEL STEAP1B 256227 hgsc.bcm.edu hg19 7 22533027 22533027 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . STEAP1B NM_001164460 exon3 c.514delG p.A172fs . . 225.0 17.0 177.0 0.0 . 22 . . Atlas-INDEL RINL 126432 hgsc.bcm.edu hg19 19 39359906 39359906 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RINL NM_001195833 exon11 c.1620delG p.K540fs . . 156.0 10.0 157.0 0.0 . 32 . . Atlas-INDEL CNTN3 5067 hgsc.bcm.edu hg19 3 74413707 74413707 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 CNTN3,NS,carcinoma,0,1 CNTN3 NM_020872 exon9 c.1125delC p.N375fs . . 179.0 12.0 130.0 0.0 . 174 . . Atlas-INDEL CYLD 1540 hgsc.bcm.edu hg19 16 50785567 50785567 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CYLD NM_001042355 exon4 c.556delC p.L186fs . . 142.0 10.0 116.0 0.0 . 150 . . Atlas-INDEL PABPC3 5042 hgsc.bcm.edu hg19 13 25670906 25670906 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PABPC3 NM_030979 exon1 c.569delT p.F190fs . . 110.0 10.0 164.0 0.0 . 129 . . Atlas-INDEL TTC3 7267 hgsc.bcm.edu hg19 21 38494152 38494152 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTC3 NM_001001894 exon12 c.935delT p.L312fs . . 187.0 12.0 204.0 0.0 . 182 . . Atlas-INDEL DRAP1 10589 hgsc.bcm.edu hg19 11 65688853 65688853 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DRAP1 NM_006442 exon7 c.564delG p.A188fs . . 378.0 23.0 218.0 0.0 . 18 . . Atlas-INDEL LIG3 3980 hgsc.bcm.edu hg19 17 33323630 33323630 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . LIG3 NM_013975 exon11 c.1780delG p.V594fs . . 167.0 11.0 127.0 0.0 . 164 . . Atlas-INDEL FAM161A 84140 hgsc.bcm.edu hg19 2 62067256 62067256 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FAM161A NM_032180 exon3 c.884delT p.L295fs . . 156.0 11.0 155.0 0.0 . 200 . . Atlas-INDEL MAP1S 55201 hgsc.bcm.edu hg19 19 17836717 17836717 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAP1S NM_018174 exon5 c.523delT p.W175fs . . 171.0 12.0 208.0 0.0 . 74 . . Atlas-INDEL RNPS1 10921 hgsc.bcm.edu hg19 16 2314622 2314622 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RNPS1 NM_006711 exon2 c.24delG p.K8fs . . 126.0 11.0 90.0 0.0 . 18 . . Atlas-INDEL DYNC1LI1 51143 hgsc.bcm.edu hg19 3 32570036 32570036 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DYNC1LI1 NM_016141 exon12 c.1365delG p.K455fs . . 116.0 10.0 101.0 0.0 . 23 . . Atlas-INDEL PDYN 5173 hgsc.bcm.edu hg19 20 1961108 1961108 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PDYN NM_001190898 exon4 c.627delC p.G209fs . . 219.0 16.0 189.0 0.0 . 74 . . Atlas-INDEL ANKS1B 56899 hgsc.bcm.edu hg19 12 100166806 100166806 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ANKS1B NM_152788 exon8 c.1023delG p.K341fs . . 234.0 15.0 212.0 0.0 . 180 . . Atlas-INDEL STK32B 55351 hgsc.bcm.edu hg19 4 5053615 5053615 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . STK32B NM_018401 exon1 c.24delG p.K8fs . . 166.0 14.0 145.0 0.0 . 87 . . Atlas-INDEL ZNF248 57209 hgsc.bcm.edu hg19 10 38121237 38121237 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF248 NM_021045 exon6 c.1047delA p.G349fs . . 243.0 15.0 172.0 0.0 . 61 . . Atlas-INDEL CCDC73 493860 hgsc.bcm.edu hg19 11 32663555 32663555 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CCDC73 NM_001008391 exon13 c.1014delT p.T338fs . . 161.0 10.0 172.0 0.0 . 136 . . Atlas-INDEL KLK6 5653 hgsc.bcm.edu hg19 19 51470427 51470427 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KLK6 NM_001012964 exon3 c.196delC p.P66fs . . 190.0 13.0 104.0 0.0 . 35 . . Atlas-INDEL BPIFB3 359710 hgsc.bcm.edu hg19 20 31656746 31656746 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_182658 exon10 c.1115delA p.K372fs . . 155.0 11.0 150.0 0.0 . . . . Atlas-INDEL PNN 5411 hgsc.bcm.edu hg19 14 39648419 39648419 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PNN NM_002687 exon7 c.622delC p.L208fs . . 145.0 11.0 106.0 0.0 . 67 . . Atlas-INDEL SEMA5B 54437 hgsc.bcm.edu hg19 3 122680077 122680077 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SEMA5B NM_001256347 exon2 c.197delA p.H66fs . . 204.0 14.0 151.0 0.0 . 303 . . Atlas-INDEL ZNF518B 85460 hgsc.bcm.edu hg19 4 10445202 10445202 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF518B NM_053042 exon3 c.2752delC p.Q918fs . . 158.0 10.0 141.0 0.0 . 116 . . Atlas-INDEL KHSRP 8570 hgsc.bcm.edu hg19 19 6415893 6415893 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KHSRP NM_003685 exon16 c.1614delT p.P538fs . . 193.0 12.0 154.0 0.0 . 51 . . Atlas-INDEL SPATA31A1 647060 hgsc.bcm.edu hg19 9 39890582 39890582 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 . NM_001085452 exon4 c.3568delC p.Q1190fs . . 187.0 14.0 153.0 0.0 . . . . Atlas-INDEL TTLL12 23170 hgsc.bcm.edu hg19 22 43572405 43572405 + Splice_Site DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TTLL12 NM_015140 exon7 c.841-2T>- . . . 190.0 13.0 143.0 0.0 . 50 . . Atlas-INDEL MTFMT 123263 hgsc.bcm.edu hg19 15 65295429 65295429 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MTFMT NM_139242 exon9 c.1142delC p.T381fs . . 115.0 10.0 76.0 0.0 . 28 . . Atlas-INDEL IQCC 55721 hgsc.bcm.edu hg19 1 32673443 32673443 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 IQCC NM_001160042 exon5 c.1400delT p.L467fs . . 187.0 13.0 135.0 0.0 . 46 . . Atlas-INDEL TSHR 7253 hgsc.bcm.edu hg19 14 81610522 81610522 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 TSHR,NS,carcinoma,0,1 TSHR NM_000369 exon10 c.2119delC p.R707fs . . 200.0 13.0 152.0 0.0 . 462 . . Atlas-INDEL TSPYL5 85453 hgsc.bcm.edu hg19 8 98289664 98289664 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TSPYL5 NM_033512 exon1 c.410delG p.R137fs . . 187.0 13.0 178.0 0.0 . 48 . . Atlas-INDEL PXDN 7837 hgsc.bcm.edu hg19 2 1670061 1670061 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PXDN NM_012293 exon10 c.1217delA p.D406fs . . 287.0 18.0 257.0 0.0 . 255 . . Atlas-INDEL CDH20 28316 hgsc.bcm.edu hg19 18 59195338 59195338 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CDH20 NM_031891 exon6 c.1155delG p.E385fs . . 281.0 17.0 227.0 0.0 . 117 . . Atlas-INDEL AFF3 3899 hgsc.bcm.edu hg19 2 100170975 100170975 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AFF3 NM_001025108 exon23 c.3433delA p.M1145fs . . 103.0 10.0 70.0 0.0 . 164 . . Atlas-INDEL FKBP15 23307 hgsc.bcm.edu hg19 9 115931867 115931867 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . FKBP15 NM_015258 exon26 c.3123delG p.P1041fs . . 202.0 13.0 146.0 0.0 . 128 . . Atlas-INDEL ZNF354A 6940 hgsc.bcm.edu hg19 5 178139937 178139937 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF354A NM_005649 exon5 c.943delA p.I315fs . . 158.0 12.0 104.0 0.0 . 74 . . Atlas-INDEL RACGAP1 29127 hgsc.bcm.edu hg19 12 50399098 50399098 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RACGAP1 NM_013277 exon6 c.367delT p.S123fs . . 144.0 10.0 143.0 0.0 . 36 . . Atlas-INDEL KLHDC8B 200942 hgsc.bcm.edu hg19 3 49210244 49210244 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . KLHDC8B NM_173546 exon2 c.41delT p.F14fs . . 145.0 10.0 128.0 0.0 . 28 . . Atlas-INDEL NFAT5 10725 hgsc.bcm.edu hg19 16 69727260 69727260 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NFAT5 NM_138713 exon13 c.3531delA p.A1177fs . . 206.0 15.0 112.0 0.0 . 184 . . Atlas-INDEL DEFB131 644414 hgsc.bcm.edu hg19 4 9446272 9446272 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 DEFB131 NM_001040448 exon1 c.12delG p.L4fs . . 213.0 14.0 208.0 0.0 . 12 . . Atlas-INDEL ZBTB12 221527 hgsc.bcm.edu hg19 6 31868583 31868583 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZBTB12 NM_181842 exon2 c.501delA p.P167fs . . 164.0 12.0 59.0 0.0 . 25 . . Atlas-INDEL MAPK14 1432 hgsc.bcm.edu hg19 6 36063826 36063826 + Frame_Shift_Del DEL A A - rs150174370 TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 MAPK14_ENST00000229794,NS,carcinoma,0,1 MAPK14 NM_139014 exon9 c.744delG p.K248fs . . 118.0 10.0 118.0 0.0 . 75 . . Atlas-INDEL HIRA 7290 hgsc.bcm.edu hg19 22 19346949 19346949 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HIRA NM_003325 exon18 c.2145delC p.G715fs . . 154.0 10.0 112.0 0.0 . 100 . . Atlas-INDEL GNPAT 8443 hgsc.bcm.edu hg19 1 231403484 231403484 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GNPAT NM_014236 exon9 c.1113delC p.Y371X . . 146.0 10.0 73.0 0.0 . 73 . . Atlas-INDEL DOCK5 80005 hgsc.bcm.edu hg19 8 25136115 25136115 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DOCK5 NM_024940 exon5 c.254delT p.L85fs . . 198.0 12.0 215.0 0.0 . 167 . . Atlas-INDEL ALS2CR12 130540 hgsc.bcm.edu hg19 2 202164026 202164026 + Splice_Site DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ALS2CR12 NM_001127391 exon13 c.880-2T>- . . . 145.0 13.0 117.0 0.0 . 54 . . Atlas-INDEL ZNF385B 151126 hgsc.bcm.edu hg19 2 180634453 180634453 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF385B NM_152520 exon3 c.31delG p.E11fs . . 146.0 10.0 118.0 0.0 . 68 . . Atlas-INDEL AP1G2 8906 hgsc.bcm.edu hg19 14 24032654 24032654 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 AP1G2 NM_003917 exon14 c.1346delC p.A449fs . . 249.0 15.0 163.0 0.0 . 75 . . Atlas-INDEL MYO18B 84700 hgsc.bcm.edu hg19 22 26164836 26164836 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MYO18B NM_032608 exon4 c.952delT p.W318fs . . 127.0 11.0 99.0 0.0 . 322 . . Atlas-INDEL DCST2 127579 hgsc.bcm.edu hg19 1 155001838 155001838 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . DCST2 NM_144622 exon8 c.1214delA p.Y405fs . . 209.0 13.0 93.0 0.0 . 80 . . Atlas-INDEL SLC35D3 340146 hgsc.bcm.edu hg19 6 137243900 137243900 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC35D3 NM_001008783 exon1 c.333delG p.L111fs . . 218.0 19.0 252.0 0.0 . 33 . . Atlas-INDEL SLC35D2 11046 hgsc.bcm.edu hg19 9 99099002 99099002 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC35D2 NM_007001 exon9 c.750delG p.L250fs . . 149.0 10.0 115.0 0.0 . 20 . . Atlas-INDEL TPCN1 53373 hgsc.bcm.edu hg19 12 113704017 113704017 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . TPCN1 NM_001143819 exon5 c.485delA p.H162fs . . 149.0 10.0 179.0 0.0 . 109 . . Atlas-INDEL SEC31A 22872 hgsc.bcm.edu hg19 4 83763594 83763594 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SEC31A NM_001077207 exon22 c.2668delT p.S890fs . . 151.0 12.0 127.0 0.0 . 227 . . Atlas-INDEL IRAK1 3654 hgsc.bcm.edu hg19 X 153278528 153278528 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . IRAK1 NM_001569 exon12 c.1897delA p.S633fs . . 123.0 10.0 85.0 0.0 . 107 . . Atlas-INDEL CLDN8 9073 hgsc.bcm.edu hg19 21 31587622 31587622 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CLDN8 NM_199328 exon1 c.623delG p.S208fs . . 182.0 12.0 207.0 0.0 . 40 . . Atlas-INDEL PCED1B 91523 hgsc.bcm.edu hg19 12 47630043 47630043 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_138371 exon2 c.1196delG p.G399fs . . 186.0 12.0 127.0 0.0 . . . . Atlas-INDEL NFATC1 4772 hgsc.bcm.edu hg19 18 77227633 77227633 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . NFATC1 NM_172390 exon8 c.2142delC p.C714fs . . 149.0 10.0 76.0 0.0 . 105 . . Atlas-INDEL GABRQ 55879 hgsc.bcm.edu hg19 X 151820189 151820189 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GABRQ NM_018558 exon8 c.1101delA p.R367fs . . 105.0 11.0 78.0 0.0 . 131 . . Atlas-INDEL JAZF1 221895 hgsc.bcm.edu hg19 7 28220144 28220144 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . JAZF1 NM_175061 exon1 c.54delC p.G18fs . . 187.0 12.0 113.0 0.0 . 13 . . Atlas-INDEL N4BP1 9683 hgsc.bcm.edu hg19 16 48596002 48596002 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . N4BP1 NM_153029 exon2 c.553delG p.E185fs . . 128.0 11.0 121.0 0.0 . 121 . . Atlas-INDEL HSP90B1 7184 hgsc.bcm.edu hg19 12 104340586 104340586 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HSP90B1 NM_003299 exon16 c.2128delG p.V710fs . . 189.0 13.0 123.0 0.0 . 72 . . Atlas-INDEL C6orf89 221477 hgsc.bcm.edu hg19 6 36870160 36870160 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . C6orf89 NM_152734 exon3 c.373delG p.E125fs . . 155.0 10.0 135.0 0.0 . 39 . . Atlas-INDEL MAP1A 4130 hgsc.bcm.edu hg19 15 43816721 43816721 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MAP1A NM_002373 exon4 c.3049delG p.E1017fs . . 123.0 10.0 108.0 0.0 . 189 . . Atlas-INDEL SREK1IP1 285672 hgsc.bcm.edu hg19 5 64050152 64050152 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SREK1IP1 NM_173829 exon2 c.52delT p.C18fs . . 243.0 17.0 175.0 0.0 . 28 . . Atlas-INDEL RUFY4 285180 hgsc.bcm.edu hg19 2 218938584 218938584 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . RUFY4 NM_198483 exon8 c.575delG p.R192fs . . 153.0 11.0 131.0 0.0 . 59 . . Atlas-INDEL ENTPD5 957 hgsc.bcm.edu hg19 14 74453565 74453565 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 .,1 ENTPD5 NM_001249 exon5 c.250delG p.D84fs . . 201.0 13.0 162.0 0.0 . 26 . . Atlas-INDEL UNC79 57578 hgsc.bcm.edu hg19 14 94100954 94100954 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . UNC79 NM_020818 exon32 c.5272delG p.A1758fs . . 207.0 15.0 196.0 0.0 . 366 . . Atlas-INDEL GAS2L3 283431 hgsc.bcm.edu hg19 12 101017470 101017470 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . GAS2L3 NM_174942 exon10 c.886delC p.Q296fs . . 183.0 11.0 149.0 0.0 . 76 . . Atlas-INDEL OCSTAMP 128506 hgsc.bcm.edu hg19 20 45170221 45170221 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . OCSTAMP NM_080721 exon3 c.1394delA p.D465fs . . 178.0 11.0 128.0 0.0 . 34 . . Atlas-INDEL ACTR6 64431 hgsc.bcm.edu hg19 12 100599500 100599500 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ACTR6 NM_022496 exon3 c.232delC p.L78fs . . 175.0 13.0 110.0 0.0 . 29 . . Atlas-INDEL CORO2A 7464 hgsc.bcm.edu hg19 9 100889088 100889088 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . CORO2A NM_003389 exon11 c.1190delT p.L397fs . . 120.0 10.0 80.0 0.0 . 54 . . Atlas-INDEL ZNF286A 57335 hgsc.bcm.edu hg19 17 15619756 15619756 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 ZNF286A,NS,carcinoma,0,1 ZNF286A NM_020652 exon6 c.717delG p.E239fs . . 228.0 14.0 177.0 0.0 . 58 . . Atlas-INDEL PDGFRA 5156 hgsc.bcm.edu hg19 4 55146491 55146491 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PDGFRA NM_006206 exon16 c.2164delA p.I722fs . . 185.0 12.0 174.0 0.0 . 1583 . . Atlas-INDEL ADAP1 11033 hgsc.bcm.edu hg19 7 939058 939058 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ADAP1 NM_006869 exon9 c.866delT p.L289fs . . 254.0 16.0 202.0 0.0 . 23 . . Atlas-INDEL SLC6A15 55117 hgsc.bcm.edu hg19 12 85279291 85279291 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . SLC6A15 NM_018057 exon4 c.498delG p.L166fs . . 155.0 10.0 145.0 0.0 . 159 . . Atlas-INDEL PTGR1 22949 hgsc.bcm.edu hg19 9 114355220 114355220 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . PTGR1 NM_001146108 exon4 c.196delC p.Q66fs . . 208.0 15.0 134.0 0.0 . 23 . . Atlas-INDEL HCFC2 29915 hgsc.bcm.edu hg19 12 104495863 104495863 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . HCFC2 NM_013320 exon14 c.1995delC p.S665fs . . 164.0 11.0 162.0 0.0 . 94 . . Atlas-INDEL MUC16 94025 hgsc.bcm.edu hg19 19 9066715 9066715 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . MUC16 NM_024690 exon3 c.20732delC p.T6911fs . . 196.0 13.0 164.0 0.0 . 4315 . . Atlas-INDEL AHNAK2 113146 hgsc.bcm.edu hg19 14 105412200 105412200 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . AHNAK2 NM_138420 exon7 c.9589delT p.S3197fs . . 254.0 11.0 166.0 0.0 . 719 . . Pindel ZNF443 10224 hgsc.bcm.edu hg19 19 12541062 12541062 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF443 NM_005815 exon4 c.1925delC p.T642fs . . 277.0 14.0 219.0 0.0 . 63 . . Pindel TRMT13 54482 hgsc.bcm.edu hg19 1 100613582 100613582 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . . NM_019083 exon10 c.949delG p.E317fs . . 201.0 10.0 183.0 0.0 . . . . Pindel BZRAP1 9256 hgsc.bcm.edu hg19 17 56393388 56393388 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . BZRAP1 NM_004758 exon16 c.2095delG p.E699fs . . 232.0 11.0 202.0 0.0 . 287 . . Pindel ZNF311 282890 hgsc.bcm.edu hg19 6 28963809 28963809 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A0-01A-11D-A20W-10 TCGA-DD-A3A0-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 148ae891-9087-42b8-afa7-4365f5f6f571 e13dd465-5367-4faa-82bf-be30550c67b3 . ZNF311 NM_001010877 exon7 c.971delC p.T324fs . . 204.0 10.0 165.0 0.0 . 59 . . Pindel