Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SLC25A24	29957	hgsc.bcm.edu	hg19	1	108735196	108735196	+	Missense_Mutation	SNP	C	C	A	rs150343087	bycluster;byfrequency;alternate_allele	TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC25A24	NM_213651	exon1	c.G48T	p.K16N	CCCATCCTTGTTA	.	108.0	54.0	107.0	0.0	.	65	.	C|0.996;T|0.004	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152083976	152083976	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TCHH	NM_007113	exon3	c.G1717T	p.E573X	GCCTCTCCTCCTG	.	347.0	72.0	242.0	0.0	.	275	.	.	Atlas-SNP
SELE	6401	hgsc.bcm.edu	hg19	1	169696929	169696929	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SELE	NM_000450	exon9	c.T1419C	p.L473L	GCACTCAAGTTGA	.	312.0	96.0	261.0	0.0	.	84	.	.	Atlas-SNP
E2F6	1876	hgsc.bcm.edu	hg19	2	11593707	11593707	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	E2F6	NM_198256	exon4	c.380+1G>C	.	AACTCACATCCAT	.	113.0	38.0	186.0	0.0	.	17	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21231070	21231070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	APOB,NS,carcinoma,0,1	APOB	NM_000384	exon26	c.C8670A	p.F2890L	TTTGTGGAAGTAT	.	141.0	53.0	157.0	0.0	.	761	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32602706	32602706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	BIRC6	NM_016252	exon2	c.G376T	p.V126F	GATAAAGTTATAT	.	157.0	37.0	167.0	0.0	.	838	.	.	Atlas-SNP
TGFA	7039	hgsc.bcm.edu	hg19	2	70742002	70742002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TGFA	NM_001099691	exon2	c.C83G	p.S28C	AGCGGGGACGTGC	.	84.0	24.0	96.0	0.0	.	14	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84931193	84931193	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DNAH6	NM_001370	exon51	c.C8232T	p.V2744V	TTAGGTCCGTAAC	.	62.0	29.0	73.0	0.0	.	194	.	.	Atlas-SNP
ACVR1C	130399	hgsc.bcm.edu	hg19	2	158390474	158390474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ACVR1C	NM_145259	exon9	c.A1438G	p.K480E	TAGTCTTCTTAAT	.	64.0	25.0	54.0	0.0	.	85	.	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201478589	201478589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	AOX1	NM_001159	exon15	c.T1511G	p.L504W	CCCTTTTGGGCTC	.	178.0	67.0	159.0	0.0	.	152	.	.	Atlas-SNP
RAPH1	65059	hgsc.bcm.edu	hg19	2	204304792	204304792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RAPH1	NM_213589	exon14	c.C3121T	p.L1041F	GTTGGAGAACTCC	.	64.0	22.0	114.0	0.0	.	118	.	.	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241712532	241712532	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KIF1A	NM_001244008	exon13	c.C1179G	p.D393E	CTCACTGTCAGTG	.	87.0	34.0	114.0	0.0	.	152	.	.	Atlas-SNP
RNF123	63891	hgsc.bcm.edu	hg19	3	49739578	49739578	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RNF123	NM_022064	exon18	c.1557+1G>A	.	AATGGGGTGAGTG	.	168.0	63.0	176.0	0.0	.	100	.	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	hg19	3	64579956	64579956	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAMTS9	NM_182920	exon28	c.G4334A	p.W1445X	GTACTCCATGCAG	.	144.0	55.0	148.0	0.0	.	206	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184910061	184910061	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C2125T	p.L709L	CTTTCAGGGGAGG	.	150.0	12.0	146.0	0.0	.	73	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184910094	184910094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C2092G	p.L698V	TTTTTAGATAGTC	.	140.0	12.0	156.0	0.0	.	73	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184910309	184910309	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1877A	p.S626X	ATAAGTGAATATA	.	109.0	6.0	143.0	0.0	.	73	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184910328	184910328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1858A	p.L620I	GTTCAAGGATCTC	.	106.0	7.0	123.0	0.0	.	73	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184910834	184910834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1352T	p.S451F	GGGGAAGAGTATT	.	173.0	11.0	184.0	0.0	.	73	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184910910	184910910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1276T	p.H426Y	CCAAGTGAGGACG	.	169.0	15.0	194.0	0.0	.	73	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184910913	184910913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	EHHADH,trunk,malignant_melanoma,0,1	EHHADH	NM_001966	exon7	c.C1273T	p.P425S	AGTGAGGACGATC	.	164.0	13.0	193.0	0.0	.	73	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184911086	184911086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	EHHADH	NM_001966	exon7	c.C1100T	p.S367L	ACAGATGAAGTTA	.	203.0	14.0	176.0	0.0	.	73	.	.	Atlas-SNP
IDUA	3425	hgsc.bcm.edu	hg19	4	994398	994398	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	IDUA	NM_000203	exon3	c.300-2A>T	.	TTCTGCAGGGGGT	.	212.0	87.0	223.0	0.0	.	33	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48578067	48578067	+	Missense_Mutation	SNP	C	C	T	rs375943517		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FRYL	NM_015030	exon24	c.G2701A	p.G901S	TATAGCCGCTATC	.	71.0	5.0	89.0	0.0	.	242	.	.	Atlas-SNP
ACSL1	2180	hgsc.bcm.edu	hg19	4	185709825	185709825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ACSL1	NM_001995	exon3	c.T256A	p.Y86N	CATCATAGAAATA	.	40.0	16.0	49.0	0.0	.	77	.	.	Atlas-SNP
C7	730	hgsc.bcm.edu	hg19	5	40981550	40981550	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	C7	NM_000587	exon18	c.A2407T	p.S803C	GGGTTTAGCATTT	.	151.0	70.0	205.0	0.0	.	136	.	.	Atlas-SNP
CEP120	153241	hgsc.bcm.edu	hg19	5	122725672	122725672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CEP120	NM_153223	exon9	c.G1201A	p.E401K	CACTTTCTGTTGC	.	282.0	100.0	339.0	0.0	.	72	.	.	Atlas-SNP
PCDHA8	56140	hgsc.bcm.edu	hg19	5	140222268	140222268	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	PCDHA8_ENST00000531613,caecum,carcinoma,0,2	PCDHA8	NM_031856	exon1	c.G1362A	p.A454A	TCCGGCGTTCGCG	.	354.0	142.0	428.0	0.0	.	366	.	.	Atlas-SNP
TLX3	30012	hgsc.bcm.edu	hg19	5	170736448	170736448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TLX3	NM_021025	exon1	c.C79A	p.P27T	AACAGCCCGGACC	.	28.0	10.0	23.0	0.0	.	23	.	.	Atlas-SNP
UNC5A	90249	hgsc.bcm.edu	hg19	5	176305056	176305056	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UNC5A	NM_133369	exon11	c.G1797A	p.A599A	GTTTGCGCCGGTG	.	87.0	47.0	94.0	0.0	.	76	.	.	Atlas-SNP
FLOT1	10211	hgsc.bcm.edu	hg19	6	30709635	30709635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FLOT1	NM_005803	exon3	c.G53A	p.R18Q	GGGCTTCGGCAGA	.	80.0	37.0	91.0	0.0	.	28	.	.	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	hg19	6	42585071	42585071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UBR2	NM_015255	exon11	c.A1276G	p.T426A	GCACCTACTCTGG	.	147.0	62.0	157.0	0.0	.	134	.	.	Atlas-SNP
GFRAL	389400	hgsc.bcm.edu	hg19	6	55198738	55198738	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	GFRAL	NM_207410	exon3	c.A312G	p.K104K	CAATAAATCAGGT	.	20.0	11.0	32.0	0.0	.	91	.	.	Atlas-SNP
NT5C3A	0	hgsc.bcm.edu	hg19	7	33054407	33054407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_001002010	exon9	c.G946T	p.D316Y	CAATATCATAAGA	.	46.0	8.0	46.0	0.0	.	.	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82580517	82580517	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PCLO	NM_014510	exon6	c.A9387C	p.S3129S	AGGTAATGAAGTC	.	153.0	57.0	184.0	0.0	.	1506	.	.	Atlas-SNP
SSMEM1	0	hgsc.bcm.edu	hg19	7	129847775	129847775	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	.	NM_145268	exon1	c.T25G	p.W9G	TTATTTTGGGAGG	.	164.0	62.0	198.0	0.0	.	.	.	.	Atlas-SNP
DCAF4L2	138009	hgsc.bcm.edu	hg19	8	88885313	88885313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DCAF4L2	NM_152418	exon1	c.T887C	p.L296P	TCCCACAGCTTGA	.	189.0	48.0	214.0	0.0	.	187	.	.	Atlas-SNP
FAM205A	259308	hgsc.bcm.edu	hg19	9	34725816	34725816	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	FAM205A	NM_001141917	exon4	c.T1421A	p.L474H	AAGGAGAGCTCAT	.	296.0	54.0	207.0	0.0	.	45	.	.	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	hg19	9	135782757	135782757	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TSC1	NM_000368	exon13	c.G1264T	p.E422X	TCTCTTCCTGAAA	.	93.0	60.0	169.0	0.0	.	167	.	.	Atlas-SNP
BTAF1	9044	hgsc.bcm.edu	hg19	10	93722349	93722349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	BTAF1	NM_003972	exon12	c.C1318G	p.Q440E	GGACTCCAGGATC	.	375.0	150.0	405.0	0.0	.	148	.	.	Atlas-SNP
ANO9	338440	hgsc.bcm.edu	hg19	11	432029	432029	+	Missense_Mutation	SNP	C	C	T	rs139380371		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	ANO9,NS,carcinoma,0,1	ANO9	NM_001012302	exon5	c.G376A	p.V126I	TGACAACGAAGTT	.	89.0	30.0	86.0	0.0	.	61	.	C|1.000;T|0.000	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	hg19	12	6692504	6692504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	CHD4	NM_001273	exon26	c.A3920G	p.E1307G	ACACTTTCTTCCT	.	159.0	55.0	180.0	0.0	.	539	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43792900	43792900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAMTS20	NM_025003	exon29	c.G4421T	p.C1474F	GAAGGGCATCTGA	.	147.0	51.0	177.0	0.0	.	635	.	.	Atlas-SNP
ADCY6	112	hgsc.bcm.edu	hg19	12	49170256	49170256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADCY6	NM_020983	exon7	c.A1490G	p.N497S	ACATCATTGGACC	.	95.0	36.0	131.0	0.0	.	81	.	.	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	hg19	12	114386746	114386746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	RBM19	NM_001146699	exon10	c.G1168A	p.G390R	TCTCCCCGAGTAT	.	260.0	93.0	321.0	0.0	.	117	.	.	Atlas-SNP
ATP7B	540	hgsc.bcm.edu	hg19	13	52548363	52548363	+	Silent	SNP	G	G	A	rs377294197		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ATP7B	NM_000053	exon2	c.C993T	p.A331A	CCCTTCGGCTCCA	.	38.0	7.0	69.0	0.0	.	123	.	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	hg19	14	42357103	42357103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LRFN5	NM_152447	exon3	c.A1275T	p.E425D	GGCAGAAGCTACA	.	141.0	59.0	166.0	0.0	.	269	.	.	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	hg19	14	70925176	70925176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ADAM21	NM_003813	exon2	c.T960G	p.I320M	ACCTATTGATTGT	.	178.0	82.0	223.0	0.0	.	181	.	.	Atlas-SNP
PTPN9	5780	hgsc.bcm.edu	hg19	15	75798215	75798215	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	PTPN9	NM_002833	exon7	c.C769G	p.H257D	CTGGGTGGCCGTT	.	207.0	83.0	203.0	0.0	.	53	.	.	Atlas-SNP
KRT27	342574	hgsc.bcm.edu	hg19	17	38933922	38933922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	KRT27	NM_181537	exon6	c.G1035T	p.Q345H	CTGGATCTGTGCC	.	133.0	69.0	145.0	0.0	.	41	.	.	Atlas-SNP
UTS2R	2837	hgsc.bcm.edu	hg19	17	80332626	80332626	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	UTS2R	NM_018949	exon1	c.C426A	p.T142T	GCTGACCGTCATG	.	56.0	24.0	71.0	0.0	.	25	.	.	Atlas-SNP
ZNF20	7568	hgsc.bcm.edu	hg19	19	12243520	12243520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ZNF20	NM_021143	exon4	c.G1481A	p.R494Q	TGATATCGAATGT	.	70.0	25.0	102.0	0.0	.	86	.	.	Atlas-SNP
ERF	2077	hgsc.bcm.edu	hg19	19	42753847	42753847	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ERF	NM_006494	exon4	c.T417G	p.G139G	GTGGCTACCACCC	.	46.0	22.0	74.0	0.0	.	47	.	.	Atlas-SNP
TRPM4	54795	hgsc.bcm.edu	hg19	19	49703678	49703678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	TRPM4	NM_017636	exon18	c.G2767A	p.V923M	GTCATCGTGAGCA	.	68.0	34.0	75.0	0.0	.	119	.	.	Atlas-SNP
SLC2A4RG	56731	hgsc.bcm.edu	hg19	20	62373481	62373481	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	SLC2A4RG	NM_020062	exon5	c.580-2A>G	.	TGCTGCAGAGCCC	.	88.0	26.0	123.0	0.0	.	20	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41719859	41719859	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	DSCAM	NM_001271534	exon6	c.C948A	p.A316A	GATGGTGGCTTTC	.	56.0	21.0	69.0	0.0	.	347	.	.	Atlas-SNP
ASCC2	84164	hgsc.bcm.edu	hg19	22	30218403	30218403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ASCC2	NM_032204	exon5	c.C462A	p.F154L	AAAGAGGAAGTTA	.	78.0	31.0	89.0	0.0	.	53	.	.	Atlas-SNP
ARMCX1	51309	hgsc.bcm.edu	hg19	X	100808329	100808329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	ARMCX1	NM_016608	exon4	c.C416A	p.A139E	CCCTTGCACCGAG	.	73.0	35.0	92.0	0.0	.	67	.	.	Atlas-SNP
LRRC3	81543	hgsc.bcm.edu	hg19	21	45876637	45876638	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EK-01A-11D-A20W-10	TCGA-DD-A1EK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf72fbdc-f5e1-4545-976f-36570cea82ee	5c357792-6f7d-4e11-9e4c-7fbbedc56de1	.	LRRC3	NM_030891	exon2	c.110_111insC	p.C37fs	.	.	33.0	10.0	46.0	0.0	.	22	.	.	Atlas-INDEL