Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ARID1A 8289 hgsc.bcm.edu hg19 1 27105550 27105550 + Nonsense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 ARID1A,NS,carcinoma,0,8 ARID1A NM_006015 exon20 c.C5161T p.R1721X TATTTCCGACGAT . 234.0 117.0 122.0 0.0 . 842 . . Atlas-SNP LCE1B 353132 hgsc.bcm.edu hg19 1 152785040 152785040 + Missense_Mutation SNP G G T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . LCE1B NM_178349 exon1 c.G118T p.V40F CCTCCAGTCTCTT . 839.0 180.0 100.0 0.0 . 45 . . Atlas-SNP OR2M3 127062 hgsc.bcm.edu hg19 1 248366773 248366773 + Missense_Mutation SNP T T C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . OR2M3 NM_001004689 exon1 c.T404C p.L135P CCAATCTCATGAG . 911.0 202.0 147.0 0.0 . 116 . . Atlas-SNP IL18RAP 8807 hgsc.bcm.edu hg19 2 103068506 103068506 + Missense_Mutation SNP G G T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . IL18RAP NM_003853 exon12 c.G1665T p.M555I CAAAATGCGCTAC . 152.0 61.0 67.0 0.0 . 102 . . Atlas-SNP PLA2R1 22925 hgsc.bcm.edu hg19 2 160833216 160833216 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . PLA2R1 NM_001195641 exon16 c.T2417C p.I806T AACGGAATCTTGG . 250.0 115.0 121.0 0.0 . 153 . . Atlas-SNP TNS1 7145 hgsc.bcm.edu hg19 2 218696257 218696257 + Silent SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . TNS1 NM_022648 exon20 c.G2919A p.P973P CAGACCCGGGGGG . 35.0 18.0 16.0 0.0 . 251 . . Atlas-SNP SPATA3 130560 hgsc.bcm.edu hg19 2 231865207 231865207 + Missense_Mutation SNP A A T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . SPATA3 NM_139073 exon2 c.A428T p.Q143L ACTGGCAGATGGC . 133.0 53.0 62.0 0.0 . 52 . . Atlas-SNP SI 6476 hgsc.bcm.edu hg19 3 164750329 164750329 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . SI NM_001041 exon24 c.C2717T p.T906I TCATAAGTGAAAT . 96.0 35.0 49.0 0.0 . 500 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88536324 88536324 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . DSPP NM_014208 exon5 c.A2510G p.N837S GCAGCAACAGCAG . 313.0 19.0 112.0 0.0 . 174 . . Atlas-SNP IRF2 3660 hgsc.bcm.edu hg19 4 185320192 185320192 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . IRF2 NM_002199 exon7 c.G571T p.E191X CAATCTCTTGATT . 104.0 88.0 73.0 0.0 . 53 . . Atlas-SNP VCAN 1462 hgsc.bcm.edu hg19 5 82833574 82833574 + Silent SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . VCAN NM_004385 exon8 c.C4752T p.P1584P CACTCCCACTATA . 119.0 30.0 77.0 0.0 . 498 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127681089 127681089 + Silent SNP A A T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . FBN2 NM_001999 exon24 c.T3177A p.A1059A TCGGTTAGCAAAG . 93.0 26.0 45.0 0.0 . 858 . . Atlas-SNP MUC21 394263 hgsc.bcm.edu hg19 6 30954774 30954774 + Missense_Mutation SNP G G C rs41288649 bycluster TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . MUC21 NM_001010909 exon2 c.G822C p.E274D CTCTGAGTCCAGC . 472.0 46.0 63.0 0.0 . 98 . G|0.500;C|0.500 Atlas-SNP TPD52L1 7164 hgsc.bcm.edu hg19 6 125584076 125584076 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . TPD52L1 NM_003287 exon7 c.C583T p.R195W GGCTCCCGGCGGA . 18.0 10.0 16.0 0.0 . 14 . . Atlas-SNP ARHGAP18 93663 hgsc.bcm.edu hg19 6 129927037 129927037 + Silent SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ARHGAP18 NM_033515 exon10 c.C1350T p.N450N GTCCCTGTTTGCA . 89.0 65.0 68.0 0.0 . 52 . . Atlas-SNP INHBA 3624 hgsc.bcm.edu hg19 7 41729607 41729607 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 INHBA,colon,carcinoma,0,1 INHBA NM_002192 exon3 c.C922T p.R308C GCCGACGCCGGCG . 65.0 38.0 32.0 1.0 . 118 . . Atlas-SNP ZNF107 51427 hgsc.bcm.edu hg19 7 64167564 64167564 + Silent SNP T T C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ZNF107 NM_016220 exon7 c.T882C p.H294H AATTCATACTGGA . 81.0 40.0 43.0 0.0 . 107 . . Atlas-SNP ELN 2006 hgsc.bcm.edu hg19 7 73474235 73474235 + Silent SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ELN NM_001081754 exon23 c.C1449T p.G483G TGTCGGCGTGGCT . 614.0 39.0 99.0 0.0 . 81 . . Atlas-SNP SLC26A4 5172 hgsc.bcm.edu hg19 7 107315471 107315471 + Missense_Mutation SNP G G T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . SLC26A4 NM_000441 exon6 c.G682T p.A228S GCTGCTGCCTTCC . 310.0 23.0 108.0 0.0 . 117 . . Atlas-SNP PCMTD1 115294 hgsc.bcm.edu hg19 8 52733023 52733023 + Missense_Mutation SNP T T C rs114725410 TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . PCMTD1 NM_052937 exon6 c.A962G p.N321S GCTTCATTGTGAT . 754.0 40.0 162.0 0.0 . 73 . . Atlas-SNP DCSTAMP 81501 hgsc.bcm.edu hg19 8 105361088 105361088 + Missense_Mutation SNP C C A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . . NM_001257317 exon2 c.C308A p.T103K CTGGCACAGGGAT . 222.0 89.0 90.0 0.0 . . . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79867172 79867172 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 VPS13A_ENST00000376634,caecum,carcinoma,0,3 VPS13A NM_001018038 exon22 c.G2192A p.R731Q AAGCACGAAAACT . 139.0 64.0 61.0 0.0 . 735 . . Atlas-SNP ASAH2 56624 hgsc.bcm.edu hg19 10 52008360 52008360 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ASAH2 NM_019893 exon1 c.G11A p.R4H AAGGTGCGTTTGG . 104.0 37.0 65.0 0.0 . 69 . . Atlas-SNP EIF4G2 1982 hgsc.bcm.edu hg19 11 10821282 10821282 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 EIF4G2,colon,carcinoma,0,2 EIF4G2 NM_001172705 exon19 c.G2141A p.R714H AACATGCGGTCCT . 112.0 18.0 55.0 0.0 . 89 . . Atlas-SNP NXF1 10482 hgsc.bcm.edu hg19 11 62566040 62566040 + Missense_Mutation SNP G G C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . NXF1 NM_006362 exon11 c.C1024G p.R342G GTTCGCGAATGGC . 99.0 49.0 49.0 0.0 . 67 . . Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76917166 76917166 + Silent SNP G G A rs375627342 TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 MYO7A,NS,carcinoma,0,1 MYO7A NM_000260 exon41 c.G5661A p.P1887P CCCTCCGCACCTG . 84.0 32.0 37.0 0.0 . 164 . . Atlas-SNP ROBO4 54538 hgsc.bcm.edu hg19 11 124763622 124763622 + Silent SNP C C A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ROBO4 NM_019055 exon10 c.G1509T p.L503L TCTGTACAGACCT . 283.0 106.0 93.0 0.0 . 130 . . Atlas-SNP NCAPD3 23310 hgsc.bcm.edu hg19 11 134029862 134029862 + Silent SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . NCAPD3 NM_015261 exon29 c.C3792T p.V1264V CTCCTGGACCAGC . 117.0 60.0 43.0 0.0 . 141 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 80865968 80865968 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . PTPRQ NM_001145026 exon5 c.C608T p.A203V ATATTGCGGCTGA . 125.0 5.0 61.0 0.0 . 119 . . Atlas-SNP ZBTB1 22890 hgsc.bcm.edu hg19 14 64989700 64989700 + Missense_Mutation SNP A A G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ZBTB1 NM_014950 exon2 c.A1478G p.N493S AAGAGAATCCTGA . 98.0 44.0 50.0 0.0 . 93 . . Atlas-SNP ZDHHC22 283576 hgsc.bcm.edu hg19 14 77606003 77606003 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ZDHHC22 NM_174976 exon2 c.C79T p.L27F GGAAGAGCTGCAG . 57.0 20.0 26.0 0.0 . 30 . . Atlas-SNP STON2 85439 hgsc.bcm.edu hg19 14 81744756 81744756 + Missense_Mutation SNP G G A rs201611443 bycluster TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 STON2,NS,carcinoma,0,2 STON2 NM_001256430 exon6 c.C899T p.T300M GAAGGCGTGCGGT . 118.0 15.0 61.0 0.0 . 94 . . Atlas-SNP RTL1 388015 hgsc.bcm.edu hg19 14 101348750 101348750 + Silent SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . RTL1 NM_001134888 exon1 c.C2376T p.N792N CATGACGTTCTTG . 159.0 69.0 56.0 0.0 . 120 . . Atlas-SNP PACS2 23241 hgsc.bcm.edu hg19 14 105858084 105858084 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . PACS2 NM_001100913 exon22 c.G2236A p.G746R GTGAGCGGAGGCC . 80.0 28.0 19.0 0.0 . 75 . . Atlas-SNP TJP1 7082 hgsc.bcm.edu hg19 15 30012108 30012108 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . TJP1 NM_003257 exon20 c.C2876T p.P959L GGGGTGGGCTCCT . 268.0 119.0 93.0 0.0 . 140 . . Atlas-SNP BRD7 29117 hgsc.bcm.edu hg19 16 50357576 50357576 + Nonsense_Mutation SNP A A C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 BRD7,NS,carcinoma,0,1 BRD7 NM_013263 exon12 c.T1365G p.Y455X ATACGGATAATCT . 68.0 46.0 55.0 0.0 . 61 . . Atlas-SNP ITGB3 3690 hgsc.bcm.edu hg19 17 45387555 45387555 + Silent SNP G G C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ITGB3 NM_000212 exon15 c.G2352C p.T784T TATCACGTACCGG . 237.0 100.0 76.0 0.0 . 157 . . Atlas-SNP EPN3 55040 hgsc.bcm.edu hg19 17 48614425 48614425 + Missense_Mutation SNP C C T rs146173668 TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . EPN3 NM_017957 exon2 c.C508T p.R170C TTCAGCCGCCGCT . 44.0 19.0 14.0 0.0 . 32 . C|1.000;T|0.000 Atlas-SNP TOM1L1 10040 hgsc.bcm.edu hg19 17 52991114 52991114 + Missense_Mutation SNP G G C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . TOM1L1 NM_005486 exon5 c.G378C p.W126C GACTTGGTCACAG . 146.0 69.0 69.0 0.0 . 33 . . Atlas-SNP PSMC5 5705 hgsc.bcm.edu hg19 17 61908431 61908431 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . PSMC5 NM_002805 exon8 c.C715T p.R239W ATGGCACGGGAAC . 118.0 34.0 51.0 0.0 . 41 . . Atlas-SNP POTEC 388468 hgsc.bcm.edu hg19 18 14543063 14543063 + Missense_Mutation SNP A A C rs45626231 bycluster TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . POTEC NM_001137671 exon1 c.T83G p.F28C TGGTGAAACCACT . 607.0 28.0 130.0 0.0 . 129 . A|1.000;|0.000 Atlas-SNP MAPK4 5596 hgsc.bcm.edu hg19 18 48190630 48190630 + Missense_Mutation SNP C C T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . MAPK4 NM_002747 exon2 c.C302T p.A101V GCGTGGCGTACAT . 36.0 14.0 15.0 0.0 . 75 . . Atlas-SNP RPS6KA3 6197 hgsc.bcm.edu hg19 X 20252926 20252926 + Nonsense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . RPS6KA3 NM_004586 exon2 c.C76T p.Q26X TTTGCTGTCCATT . 243.0 204.0 108.0 0.0 . 110 . . Atlas-SNP ATP6 0 hgsc.bcm.edu hg19 MT 9182 9182 + Missense_Mutation SNP G G A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . . ENST00000361899 exon1 c.G656A p.S219N TAGTAAGCCTCTA . 156.0 148.0 25.0 0.0 . . . . Atlas-SNP MCL1 4170 hgsc.bcm.edu hg19 1 150551926 150551927 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . MCL1 NM_021960 exon1 c.81_82insG p.G27fs . . 209.0 13.0 13.0 0.0 . 27 . . Atlas-INDEL ARID1A 8289 hgsc.bcm.edu hg19 1 27106893 27106894 + Frame_Shift_Ins INS - - T novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . ARID1A NM_006015 exon20 c.6504_6505insT p.V2168fs . . 73.0 16.0 49.0 0.0 . 842 . . Atlas-Indel,Pindel HEG1 57493 hgsc.bcm.edu hg19 3 124732433 124732434 + In_Frame_Ins INS - - AGAGGAGGAGGAGGAGGA rs374949821 alternate_allele TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . HEG1 NM_020733 exon6 c.1990_1991insTCCTCCTCCTCCTCCTCT p.S664delinsSSSSSSS . . 102.0 14.0 36.0 0.0 . 109 . . Atlas-INDEL IQCA1 79781 hgsc.bcm.edu hg19 2 237300683 237300683 + Frame_Shift_Del DEL T T - novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . IQCA1 NM_001270585 exon11 c.1371delC p.N457fs . . 340.0 149.0 114.0 0.0 . 170 . . Atlas-Indel,Pindel FAM205A 259308 hgsc.bcm.edu hg19 9 34723290 34723291 + Frame_Shift_Ins INS - - G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . FAM205A NM_001141917 exon4 c.3947_3948insC p.R1316fs . . 140.0 10.0 46.0 0.0 . 45 . . Atlas-INDEL HIVEP1 3096 hgsc.bcm.edu hg19 6 12125147 12125148 + Frame_Shift_Ins INS - - A novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . HIVEP1 NM_002114 exon4 c.5119_5120insA p.E1707fs . . 246.0 43.0 63.0 0.0 . 242 . . Atlas-Indel,Pindel DONSON 29980 hgsc.bcm.edu hg19 21 34956952 34956953 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . DONSON NM_017613 exon4 c.729_730insG p.G243fs . . 172.0 11.0 66.0 0.0 . 34 . . Atlas-INDEL AXIN1 8312 hgsc.bcm.edu hg19 16 347071 347072 + Frame_Shift_Ins INS - - G novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . AXIN1 NM_003502 exon7 c.1940_1941insC p.R647fs . . 66.0 48.0 36.0 0.0 . 290 . . Atlas-Indel,Pindel NCAM1 4684 hgsc.bcm.edu hg19 11 112832332 112832363 + Frame_Shift_Del DEL CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC - novel TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . NCAM1 NM_001242608 wholegene . . . . 26.0 26.0 0.0 0.0 . 372 . . Pindel CELA1 1990 hgsc.bcm.edu hg19 12 51740405 51740433 + In_Frame_Del DEL CTGGACCATATCCACTTACCATAAAGGAC CTGGACCATATCCACTTACCATAAAGGAC - rs372974824 byfrequency;alternate_allele TCGA-DD-A1EH-01A-11D-A12Z-10 TCGA-DD-A1EH-10A-01D-A12Z-10 CTGGACCATATCCACTTACCATAAAGGAC CTGGACCATATCCACTTACCATAAAGGAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b9f03936-1de5-4330-8b0f-6d0ab533876e 47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137 . CELA1 NM_001971 exon1 c.8_16del p.3_6del . . 28.0 28.0 0.0 0.0 . 39 . -|0.574;CACCAGGAAGCG|0.426 Pindel