Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KAZN	23254	hgsc.bcm.edu	hg19	1	14925544	14925544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	KAZN	NM_015209	exon1	c.G51C	p.Q17H	GGTCCAGTCGGCC	.	67.0	50.0	142.0	1.0	.	57	.	.	Atlas-SNP
TTC24	164118	hgsc.bcm.edu	hg19	1	156552954	156552954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	TTC24	NM_001105669	exon4	c.G1031T	p.R344L	CTGCCCGGGACTC	.	253.0	70.0	288.0	0.0	.	46	.	.	Atlas-SNP
VANGL2	57216	hgsc.bcm.edu	hg19	1	160388964	160388964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	VANGL2	NM_020335	exon4	c.C365T	p.T122M	TCCTCACGCCTCT	.	66.0	17.0	49.0	0.0	.	83	.	.	Atlas-SNP
C1orf226	400793	hgsc.bcm.edu	hg19	1	162353415	162353415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	C1orf226	NM_001135240	exon3	c.C890T	p.A297V	CTCAGGCACGGAC	.	42.0	14.0	44.0	0.0	.	49	.	.	Atlas-SNP
PIGC	5279	hgsc.bcm.edu	hg19	1	172413127	172413127	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	PIGC	.	.	.	.	CACCTACCCGAGA	.	71.0	43.0	100.0	0.0	.	24	.	.	Atlas-SNP
APOBEC4	403314	hgsc.bcm.edu	hg19	1	183617170	183617170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	APOBEC4	NM_203454	exon2	c.T747A	p.N249K	GTTTGGATTCCTT	.	687.0	181.0	841.0	0.0	.	45	.	.	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133538773	133538773	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	NCKAP5	NM_207363	exon15	c.A4901C	p.E1634A	CCACTTTCTGTCT	.	275.0	124.0	568.0	0.0	.	322	.	.	Atlas-SNP
SESTD1	91404	hgsc.bcm.edu	hg19	2	180036920	180036920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	SESTD1	NM_178123	exon5	c.A296G	p.K99R	TCTGGCTTTACCA	.	195.0	77.0	350.0	0.0	.	66	.	.	Atlas-SNP
TRAK2	66008	hgsc.bcm.edu	hg19	2	202245372	202245372	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	TRAK2	NM_015049	exon16	c.T2639A	p.L880X	CCTAATAAACTGC	.	127.0	52.0	236.0	0.0	.	62	.	.	Atlas-SNP
OGG1	4968	hgsc.bcm.edu	hg19	3	9792677	9792677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	OGG1	NM_016819	exon2	c.A186C	p.Q62H	GGATCAAGTATGG	.	71.0	24.0	139.0	0.0	.	57	.	.	Atlas-SNP
ENTPD3	956	hgsc.bcm.edu	hg19	3	40442397	40442397	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	ENTPD3	NM_001248	exon4	c.C181T	p.L61L	ATTGTGCTGGATG	.	157.0	68.0	439.0	0.0	.	48	.	.	Atlas-SNP
TRPC1	7220	hgsc.bcm.edu	hg19	3	142525018	142525018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	TRPC1	NM_001251845	exon13	c.A2323G	p.I775V	AATGAAATAAGGG	.	219.0	95.0	303.0	0.0	.	82	.	.	Atlas-SNP
SLITRK3	22865	hgsc.bcm.edu	hg19	3	164907129	164907129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	SLITRK3	NM_014926	exon2	c.C1490T	p.P497L	GCTGCAGGCTGGA	.	43.0	23.0	88.0	0.0	.	263	.	.	Atlas-SNP
C6	729	hgsc.bcm.edu	hg19	5	41201723	41201723	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	C6,NS,carcinoma,0,1	C6	NM_001115131	exon3	c.C237T	p.P79P	GTTGATGGGGCAT	.	183.0	79.0	456.0	0.0	.	197	.	.	Atlas-SNP
PLAC8L1	153770	hgsc.bcm.edu	hg19	5	145483862	145483862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	PLAC8L1	NM_001029869	exon1	c.G13A	p.G5R	TACTTCCAAACCA	.	135.0	52.0	300.0	0.0	.	17	.	.	Atlas-SNP
EEF1A1	1915	hgsc.bcm.edu	hg19	6	74227627	74227627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	EEF1A1	NM_001402	exon8	c.C1295T	p.T432I	GCAACTGTCTGTC	.	114.0	40.0	239.0	0.0	.	56	.	.	Atlas-SNP
EEF1A1	1915	hgsc.bcm.edu	hg19	6	74227628	74227628	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	EEF1A1	NM_001402	exon8	c.A1294T	p.T432S	CAACTGTCTGTCT	.	112.0	40.0	240.0	0.0	.	56	.	.	Atlas-SNP
RNF216	54476	hgsc.bcm.edu	hg19	7	5681008	5681008	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	RNF216	NM_207116	exon16	c.1989-1G>T	.	TCTTCACTGAAAT	.	90.0	42.0	127.0	0.0	.	71	.	.	Atlas-SNP
RAB2A	5862	hgsc.bcm.edu	hg19	8	61496802	61496802	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	RAB2A	NM_002865	exon4	c.G222T	p.S74S	AAGGTCGTATTAC	.	115.0	39.0	167.0	0.0	.	21	.	.	Atlas-SNP
MFSD3	113655	hgsc.bcm.edu	hg19	8	145735131	145735131	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	MFSD3	NM_138431	exon1	c.C415T	p.Q139X	ACCGTGCAGGTGG	.	60.0	27.0	50.0	0.0	.	17	.	.	Atlas-SNP
S1PR3	1903	hgsc.bcm.edu	hg19	9	91616620	91616620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	S1PR3	NM_005226	exon2	c.G505T	p.G169C	ACGCTGGGCGCCC	.	50.0	39.0	131.0	0.0	.	49	.	.	Atlas-SNP
ALAD	210	hgsc.bcm.edu	hg19	9	116152930	116152930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	ALAD	NM_000031	exon6	c.C424T	p.R142W	CAGCCCGGAATGC	.	15.0	9.0	54.0	0.0	.	36	.	.	Atlas-SNP
SLC2A6	11182	hgsc.bcm.edu	hg19	9	136339125	136339125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	SLC2A6	NM_017585	exon7	c.G1013T	p.R338L	ACCTTGCGGCCTG	.	24.0	15.0	71.0	0.0	.	31	.	.	Atlas-SNP
SOX6	55553	hgsc.bcm.edu	hg19	11	15994640	15994640	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	SOX6	NM_001145819	exon16	c.A2241T	p.P747P	GGTGATTGGAATC	.	125.0	60.0	196.0	0.0	.	149	.	.	Atlas-SNP
SSRP1	6749	hgsc.bcm.edu	hg19	11	57100232	57100232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	SSRP1	NM_003146	exon6	c.G635A	p.G212D	TAACGACCACGAG	.	83.0	41.0	129.0	0.0	.	75	.	.	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	hg19	12	29597095	29597095	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	OVCH1	NM_183378	exon24	c.T3000C	p.S1000S	TCTGTGAGAATTT	.	73.0	25.0	123.0	0.0	.	195	.	.	Atlas-SNP
KIF21A	55605	hgsc.bcm.edu	hg19	12	39688230	39688230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	KIF21A	NM_001173464	exon38	c.A5021G	p.N1674S	GTTTAATTACTGG	.	104.0	36.0	319.0	1.0	.	238	.	.	Atlas-SNP
MORN3	283385	hgsc.bcm.edu	hg19	12	122097220	122097220	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	MORN3	NM_173855	exon2	c.C180T	p.A60A	ATAGATGGCTCCT	.	94.0	33.0	210.0	0.0	.	20	.	.	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	hg19	13	45147977	45147977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	TSC22D1	NM_183422	exon1	c.C2234T	p.P745L	GTAGAGGGCTGCT	.	88.0	34.0	120.0	0.0	.	88	.	.	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	hg19	14	80971304	80971304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	CEP128	NM_152446	exon23	c.G3132T	p.W1044C	ATCCTGCCAAGAG	.	23.0	7.0	78.0	0.0	.	146	.	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51171120	51171120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	SALL1	NM_002968	exon3	c.C3878T	p.P1293L	GCCAGGGGAGCAT	.	44.0	29.0	180.0	0.0	.	301	.	.	Atlas-SNP
MIS12	79003	hgsc.bcm.edu	hg19	17	5392627	5392627	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	MIS12	NM_001258220	exon2	c.C445T	p.Q149X	ATTGTTCAGGCCA	.	102.0	9.0	202.0	0.0	.	19	.	.	Atlas-SNP
SREBF1	6720	hgsc.bcm.edu	hg19	17	17719328	17719328	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	SREBF1	NM_001005291	exon13	c.C2319T	p.S773S	GGCACTGCTCAGG	.	57.0	21.0	130.0	0.0	.	47	.	.	Atlas-SNP
VEZF1	7716	hgsc.bcm.edu	hg19	17	56052168	56052168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	VEZF1	NM_007146	exon6	c.C1232G	p.T411S	GACATAGTCCCAG	.	177.0	74.0	333.0	0.0	.	50	.	.	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	hg19	17	57738828	57738828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	CLTC	NM_004859	exon8	c.A1192G	p.I398V	GACACTATCCGTC	.	83.0	32.0	150.0	0.0	.	124	.	.	Atlas-SNP
CCDC40	55036	hgsc.bcm.edu	hg19	17	78011929	78011929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	CCDC40	NM_017950	exon2	c.C37T	p.P13S	TCCCATCCGGAAG	.	73.0	35.0	110.0	0.0	.	198	.	.	Atlas-SNP
STK11	6794	hgsc.bcm.edu	hg19	19	1221320	1221320	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	STK11	NM_000455	exon6	c.G843A	p.P281P	CCCCCCGCTCTCT	.	43.0	16.0	41.0	0.0	.	410	.	.	Atlas-SNP
C3	718	hgsc.bcm.edu	hg19	19	6682236	6682236	+	Missense_Mutation	SNP	G	G	C	rs148227405	alternate_allele	TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	C3	NM_000064	exon34	c.C4177G	p.R1393G	CTCCCCGGTACCT	.	55.0	20.0	133.0	0.0	.	192	.	G|1.000;A|0.000	Atlas-SNP
RGL3	57139	hgsc.bcm.edu	hg19	19	11517408	11517408	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	RGL3	NM_001035223	exon6	c.T770A	p.L257H	TCTATGAGGGTCA	.	30.0	18.0	61.0	0.0	.	100	.	.	Atlas-SNP
MAST1	22983	hgsc.bcm.edu	hg19	19	12975699	12975699	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	MAST1	NM_014975	exon13	c.G1443T	p.T481T	TGAGACGGTGCTA	.	54.0	26.0	182.0	0.0	.	214	.	.	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15350762	15350762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	BRD4	NM_058243	exon15	c.C3241T	p.H1081Y	ACTGGTGGGTCAG	.	96.0	43.0	129.0	0.0	.	172	.	.	Atlas-SNP
KIAA0355	9710	hgsc.bcm.edu	hg19	19	34791642	34791642	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	KIAA0355	NM_014686	exon2	c.C264T	p.N88N	CCTGAACGTCTTC	.	72.0	5.0	148.0	0.0	.	105	.	.	Atlas-SNP
ZNF302	55900	hgsc.bcm.edu	hg19	19	35174079	35174079	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	ZNF302	NM_018443	exon4	c.A150G	p.P50P	TAAGCCATATGTG	.	108.0	44.0	175.0	0.0	.	27	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36211168	36211168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	MLL4	NM_014727	exon3	c.T919C	p.F307L	ATCAAGTTTGTTT	.	66.0	27.0	72.0	0.0	.	229	.	.	Atlas-SNP
KLHDC7B	113730	hgsc.bcm.edu	hg19	22	50987578	50987578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	KLHDC7B	NM_138433	exon1	c.G983A	p.R328Q	ACCCCCGGGAGAA	.	24.0	7.0	8.0	0.0	.	39	.	.	Atlas-SNP
MTM1	4534	hgsc.bcm.edu	hg19	X	149814213	149814213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	MTM1	NM_000252	exon9	c.C736T	p.L246F	CAGCCTCTTGTCG	.	119.0	104.0	220.0	0.0	.	89	.	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	hg19	7	107704297	107704298	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	LAMB4	NM_007356	exon22	c.2970_2971del	p.990_991del	.	.	180.0	65.0	508.0	0.0	.	253	.	.	Atlas-Indel,Pindel
AXIN1	8312	hgsc.bcm.edu	hg19	16	348180	348180	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.,1	AXIN1	NM_003502	exon6	c.1327delG	p.A443fs	.	.	11.0	10.0	54.0	0.0	.	290	.	.	Atlas-INDEL
ZNF676	163223	hgsc.bcm.edu	hg19	19	22364225	22364225	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	ZNF676	NM_001001411	exon3	c.295delA	p.N99fs	.	.	167.0	78.0	565.0	0.0	.	146	.	.	Atlas-Indel,Pindel
MUC2	4583	hgsc.bcm.edu	hg19	11	1096485	1096485	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11B-01A-11D-A12Z-10	TCGA-DD-A11B-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0642c1b7-0644-41ae-b17a-db7e1cffcb72	353422f9-5ae7-40a6-99ef-18d0b2562c39	.	MUC2	NM_002457	exon35	c.6497delA	p.K2166fs	.	.	49.0	23.0	89.0	0.0	.	614	.	.	Atlas-Indel,Pindel