Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PLEKHN1 84069 hgsc.bcm.edu hg19 1 909218 909218 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PLEKHN1 NM_032129 exon14 c.C1440T p.L480L GTTCCTCAGTGCC . 72.0 4.0 89.0 0.0 . 49 . . Atlas-SNP FAM132A 388581 hgsc.bcm.edu hg19 1 1178923 1178923 + Nonsense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FAM132A NM_001014980 exon5 c.C541T p.Q181X CACCTTGGGCAGC . 43.0 4.0 38.0 0.0 . 12 . . Atlas-SNP CASZ1 54897 hgsc.bcm.edu hg19 1 10699170 10699170 + Missense_Mutation SNP G G C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CASZ1 NM_001079843 exon21 c.C5109G p.D1703E GTCCTCGTCGTCG . 39.0 6.0 24.0 0.0 . 150 . . Atlas-SNP PTCHD2 57540 hgsc.bcm.edu hg19 1 11574569 11574569 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PTCHD2 NM_020780 exon4 c.T1439C p.L480P ACATCCTCACCTC . 84.0 4.0 131.0 0.0 . 193 . . Atlas-SNP FHAD1 114827 hgsc.bcm.edu hg19 1 15616080 15616080 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FHAD1 NM_052929 exon4 c.C486T p.S162S GGCCTCCCACAGG . 79.0 4.0 64.0 0.0 . 78 . . Atlas-SNP SPEN 23013 hgsc.bcm.edu hg19 1 16254866 16254866 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPEN NM_015001 exon11 c.T2131C p.S711P TTTGAGTCTGACC . 113.0 5.0 130.0 0.0 . 374 . . Atlas-SNP SPEN 23013 hgsc.bcm.edu hg19 1 16255354 16255354 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPEN NM_015001 exon11 c.A2619G p.E873E CCTGGAACTCATG . 91.0 4.0 104.0 0.0 . 374 . . Atlas-SNP PADI2 11240 hgsc.bcm.edu hg19 1 17402249 17402249 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PADI2 NM_007365 exon12 c.G1380A p.V460V GAGCTCCACGGGC . 101.0 5.0 132.0 0.0 . 72 . . Atlas-SNP KLHDC7A 127707 hgsc.bcm.edu hg19 1 18809370 18809370 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KLHDC7A NM_152375 exon1 c.G1895A p.R632H CGGTGCGTGCCAA . 26.0 13.0 47.0 0.0 . 60 . . Atlas-SNP ALDH4A1 8659 hgsc.bcm.edu hg19 1 19212052 19212052 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ALDH4A1 NM_003748 exon5 c.A368G p.D123G GCCCGGTCTGCAA . 50.0 4.0 64.0 0.0 . 72 . . Atlas-SNP HSPG2 3339 hgsc.bcm.edu hg19 1 22181466 22181466 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HSPG2 NM_005529 exon48 c.A6008G p.E2003G GTGCGCTCTGACC . 139.0 6.0 161.0 0.0 . 311 . . Atlas-SNP EPHA8 2046 hgsc.bcm.edu hg19 1 22927919 22927919 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b EPHA8,NS,carcinoma,0,1 EPHA8 NM_020526 exon16 c.T2856C p.A952A CTTCGCTGCGGGC . 36.0 4.0 42.0 0.0 . 221 . . Atlas-SNP RPL11 6135 hgsc.bcm.edu hg19 1 24022368 24022368 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RPL11 NM_000975 exon5 c.A477G p.K159K CAGCAAAGAGGAG . 74.0 4.0 119.0 0.0 . 21 . . Atlas-SNP MYOM3 127294 hgsc.bcm.edu hg19 1 24406666 24406666 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b MYOM3,colon,carcinoma,0,1 MYOM3 NM_152372 exon20 c.G2426T p.R809L GATGCCCGTACAT . 49.0 3.0 65.0 0.0 . 131 . . Atlas-SNP IL22RA1 58985 hgsc.bcm.edu hg19 1 24460747 24460747 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IL22RA1 NM_021258 exon4 c.A485G p.D162G AACAGGTCATGGA . 85.0 4.0 147.0 0.0 . 62 . . Atlas-SNP IL22RA1 58985 hgsc.bcm.edu hg19 1 24463631 24463631 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IL22RA1 NM_021258 exon3 c.T345C p.S115S CTGCAGAGAGCTG . 49.0 4.0 61.0 0.0 . 62 . . Atlas-SNP AUNIP 79000 hgsc.bcm.edu hg19 1 26162302 26162302 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AUNIP NM_024037 exon3 c.T256C p.S86P TATGAGATGAAAC . 96.0 4.0 139.0 0.0 . 1 . . Atlas-SNP NUDC 10726 hgsc.bcm.edu hg19 1 27269479 27269479 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NUDC NM_006600 exon6 c.C664A p.L222I GGGGAGCTCTACA . 72.0 4.0 110.0 0.0 . 15 . . Atlas-SNP FCN3 8547 hgsc.bcm.edu hg19 1 27697419 27697419 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FCN3 NM_003665 exon6 c.T438C p.S146S GGACCAAGAGCGG . 95.0 5.0 118.0 0.0 . 30 . . Atlas-SNP OPRD1 4985 hgsc.bcm.edu hg19 1 29185650 29185650 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OPRD1 NM_000911 exon2 c.A412G p.T138A ATCTTCACGCTCA . 89.0 4.0 115.0 0.0 . 36 . . Atlas-SNP HDAC1 3065 hgsc.bcm.edu hg19 1 32797350 32797350 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b HDAC1,NS,carcinoma,0,1 HDAC1 NM_004964 exon11 c.G1162A p.A388T GAGGACGCCATCC . 70.0 4.0 87.0 0.0 . 43 . . Atlas-SNP ZMYM4 9202 hgsc.bcm.edu hg19 1 35884071 35884071 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b ZMYM4,rectum,carcinoma,0,2 ZMYM4 NM_005095 exon29 c.G4337T p.R1446L GGAAACGAAATGA . 97.0 4.0 123.0 0.0 . 143 . . Atlas-SNP KIAA0319L 79932 hgsc.bcm.edu hg19 1 35972224 35972224 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA0319L NM_024874 exon3 c.G655A p.G219S CAGAGCCACTGGT . 123.0 5.0 184.0 0.0 . 156 . . Atlas-SNP RHBDL2 54933 hgsc.bcm.edu hg19 1 39381373 39381373 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RHBDL2 NM_017821 exon3 c.T256C p.F86L AAATAAACACTGC . 84.0 5.0 134.0 0.0 . 28 . . Atlas-SNP BMP8A 353500 hgsc.bcm.edu hg19 1 39991422 39991422 + Silent SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . BMP8A NM_181809 exon7 c.C1161A p.I387I CGTCATCCTGCGC . 85.0 5.0 99.0 0.0 . 24 . . Atlas-SNP ZFP69 339559 hgsc.bcm.edu hg19 1 40961674 40961674 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_198494 exon6 c.T1524C p.S508S TAACTCTTCACTT . 96.0 4.0 123.0 0.0 . . . . Atlas-SNP SCMH1 22955 hgsc.bcm.edu hg19 1 41579042 41579042 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SCMH1 NM_001172219 exon8 c.T658C p.Y220H ACCAGTAGTCAAA . 54.0 4.0 88.0 0.0 . 120 . . Atlas-SNP PPIH 10465 hgsc.bcm.edu hg19 1 43133074 43133074 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PPIH NM_006347 exon9 c.A518G p.Q173R TCTCGCAGTGTGG . 82.0 4.0 86.0 0.0 . 15 . . Atlas-SNP LEPRE1 64175 hgsc.bcm.edu hg19 1 43224582 43224582 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LEPRE1 NM_001146289 exon4 c.A881G p.K294R AAGGGCTTCTCTC . 70.0 4.0 102.0 0.0 . 130 . . Atlas-SNP CCDC24 149473 hgsc.bcm.edu hg19 1 44461509 44461509 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCDC24 NM_152499 exon8 c.T682C p.C228R CCTTCTTGTGTCT . 86.0 4.0 116.0 0.0 . 22 . . Atlas-SNP HECTD3 79654 hgsc.bcm.edu hg19 1 45469234 45469234 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HECTD3 NM_024602 exon21 c.A2516G p.E839G TTCTCCTCGCATA . 109.0 5.0 146.0 0.0 . 158 . . Atlas-SNP CCDC17 149483 hgsc.bcm.edu hg19 1 46086573 46086573 + Splice_Site SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCDC17 NM_001114938 exon12 c.1599+2T>C . ACACTCACCTGAG . 88.0 4.0 118.0 0.0 . 54 . . Atlas-SNP CMPK1 51727 hgsc.bcm.edu hg19 1 47840605 47840605 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CMPK1 NM_016308 exon4 c.A496G p.R166G CTTGAGAGGGGAA . 91.0 4.0 135.0 0.0 . 13 . . Atlas-SNP FAF1 11124 hgsc.bcm.edu hg19 1 50941209 50941209 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FAF1 NM_007051 exon18 c.T1796C p.V599A TCAAAGACAATCT . 97.0 4.0 115.0 0.0 . 64 . . Atlas-SNP CYB5RL 606495 hgsc.bcm.edu hg19 1 54640392 54640392 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CYB5RL NM_001031672 exon8 c.A848G p.K283R AATGGCTTTCTCC . 41.0 4.0 62.0 0.0 . 17 . . Atlas-SNP MROH7 374977 hgsc.bcm.edu hg19 1 55139780 55139780 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_001039464 exon10 c.T1892C p.L631P AGGCTCTGGACGG . 147.0 6.0 172.0 0.0 . . . . Atlas-SNP BSND 7809 hgsc.bcm.edu hg19 1 55473990 55473990 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . BSND NM_057176 exon4 c.A652G p.R218G CATGACAGGGAGG . 90.0 4.0 99.0 0.0 . 36 . . Atlas-SNP KANK4 163782 hgsc.bcm.edu hg19 1 62739084 62739084 + Silent SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KANK4 NM_181712 exon3 c.G1692T p.V564V CTTCTTCACATAC . 151.0 22.0 251.0 0.0 . 135 . . Atlas-SNP USP1 7398 hgsc.bcm.edu hg19 1 62910512 62910512 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . USP1 NM_001017415 exon6 c.G661A p.E221K AAAAAAGAAGAAG . 125.0 13.0 171.0 0.0 . 51 . . Atlas-SNP DOCK7 85440 hgsc.bcm.edu hg19 1 62995054 62995054 + Silent SNP T T G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DOCK7 NM_001271999 exon30 c.A3675C p.S1225S CGGGTCTGAGTCG . 119.0 12.0 161.0 0.0 . 184 . . Atlas-SNP JAK1 3716 hgsc.bcm.edu hg19 1 65307245 65307245 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . JAK1 NM_002227 exon18 c.C2443T p.P815S ATGATGGTGTCAC . 147.0 45.0 177.0 0.0 . 209 . . Atlas-SNP JAK1 3716 hgsc.bcm.edu hg19 1 65335078 65335078 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . JAK1 NM_002227 exon6 c.A563G p.E188G AGACACTCGTTCT . 87.0 4.0 149.0 0.0 . 209 . . Atlas-SNP C1orf173 127254 hgsc.bcm.edu hg19 1 75037860 75037860 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b C1orf173,NS,carcinoma,0,1 C1orf173 NM_001002912 exon14 c.A3534G p.G1178G TTCCCCTCCTCCT . 146.0 6.0 199.0 0.0 . 380 . . Atlas-SNP ELTD1 64123 hgsc.bcm.edu hg19 1 79385900 79385900 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ELTD1 NM_022159 exon10 c.T1429C p.F477L CAAGAAAAACAAG . 75.0 4.0 91.0 0.0 . 143 . . Atlas-SNP ALG14 199857 hgsc.bcm.edu hg19 1 95448692 95448692 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ALG14 NM_144988 exon4 c.T591C p.V197V CCACTGAACAATG . 100.0 4.0 162.0 0.0 . 13 . . Atlas-SNP AKNAD1 254268 hgsc.bcm.edu hg19 1 109394791 109394791 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AKNAD1 NM_152763 exon2 c.C496T p.P166S GTTCTGGGGTTTG . 294.0 14.0 412.0 0.0 . 83 . . Atlas-SNP KIAA1324 57535 hgsc.bcm.edu hg19 1 109716107 109716107 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA1324 NM_020775 exon6 c.T708C p.N236N GCTAAATCGAGGC . 91.0 4.0 107.0 0.0 . 77 . . Atlas-SNP CELSR2 1952 hgsc.bcm.edu hg19 1 109805547 109805547 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CELSR2 NM_001408 exon7 c.A4664G p.H1555R GCCGGCACATAGA . 94.0 4.0 111.0 0.0 . 228 . . Atlas-SNP RSBN1 54665 hgsc.bcm.edu hg19 1 114309729 114309729 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RSBN1 NM_018364 exon6 c.G1927A p.V643I GGGAAACTGGAGG . 90.0 4.0 137.0 0.0 . 71 . . Atlas-SNP CD101 9398 hgsc.bcm.edu hg19 1 117552527 117552527 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CD101 NM_001256109 exon2 c.A99G p.R33R GTTTAGAGCTGAA . 84.0 4.0 113.0 0.0 . 95 . . Atlas-SNP SPAG17 200162 hgsc.bcm.edu hg19 1 118727720 118727720 + Missense_Mutation SNP A A G rs139383446 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPAG17 NM_206996 exon1 c.T61C p.S21P TGAGCGAGGGTTC . 97.0 4.0 152.0 0.0 . 263 . A|0.999;C|0.001 Atlas-SNP HMGCS2 3158 hgsc.bcm.edu hg19 1 120295968 120295968 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HMGCS2 NM_005518 exon7 c.T1229C p.F410S TAAGAGAAGGCAC . 97.0 4.0 144.0 0.0 . 58 . . Atlas-SNP NBPF10 100132406 hgsc.bcm.edu hg19 1 145367777 145367777 + Missense_Mutation SNP G G T rs200743139 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b NBPF10,NS,carcinoma,0,1 NBPF10 NM_001039703 exon83 c.G10373T p.R3458M GAAGAAGGGGAAG . 13.0 6.0 8.0 2.0 . 221 . . Atlas-SNP TDRKH 11022 hgsc.bcm.edu hg19 1 151751633 151751633 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TDRKH NM_001083965 exon5 c.A507G p.L169L TGATAGTAGTAAT . 506.0 76.0 399.0 0.0 . 45 . . Atlas-SNP UBE2Q1 55585 hgsc.bcm.edu hg19 1 154524627 154524627 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . UBE2Q1 NM_017582 exon8 c.T908C p.L303P ATCTGGAGATCGT . 150.0 6.0 104.0 0.0 . 35 . . Atlas-SNP GPATCH4 54865 hgsc.bcm.edu hg19 1 156565051 156565051 + Missense_Mutation SNP G G C rs75463812 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GPATCH4 NM_015590 exon8 c.C1082G p.T361S CTAAAAGTTTCCT . 692.0 29.0 543.0 0.0 . 34 . C|1.000;|0.000 Atlas-SNP CASQ1 844 hgsc.bcm.edu hg19 1 160160793 160160793 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CASQ1 NM_001231 exon1 c.A252G p.Q84Q AAGACAATTTGAG . 109.0 5.0 88.0 0.0 . 55 . . Atlas-SNP ARHGAP30 257106 hgsc.bcm.edu hg19 1 161019075 161019075 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ARHGAP30 NM_001025598 exon12 c.A1736G p.E579G TGTGCCTCATCCA . 108.0 5.0 68.0 0.0 . 105 . . Atlas-SNP NOS1AP 9722 hgsc.bcm.edu hg19 1 162335312 162335312 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NOS1AP NM_014697 exon9 c.T1058C p.V353A TGCTGGTCAAGCA . 85.0 4.0 68.0 0.0 . 139 . . Atlas-SNP F5 2153 hgsc.bcm.edu hg19 1 169510014 169510014 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . F5 NM_000130 exon13 c.C4314T p.L1438L TGGAGAGAGAGTC . 215.0 9.0 161.0 0.0 . 301 . . Atlas-SNP TNR 7143 hgsc.bcm.edu hg19 1 175375825 175375825 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TNR NM_003285 exon3 c.T26C p.V9A TTCAGAACCACTG . 171.0 7.0 122.0 0.0 . 399 . . Atlas-SNP NFASC 23114 hgsc.bcm.edu hg19 1 204937944 204937944 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NFASC NM_015090 exon10 c.A870G p.A290A CATCGCATGGTAC . 100.0 4.0 87.0 0.0 . 396 . . Atlas-SNP LAMB3 3914 hgsc.bcm.edu hg19 1 209788716 209788716 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LAMB3 NM_000228 exon23 c.T3419C p.I1140T AGCATGATGGCCT . 98.0 4.0 75.0 0.0 . 136 . . Atlas-SNP LAMB3 3914 hgsc.bcm.edu hg19 1 209799289 209799289 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b LAMB3,bladder,carcinoma,0,1 LAMB3 NM_000228 exon14 c.C1680T p.T560T GGGCCCGGTCAAG . 77.0 4.0 30.0 0.0 . 136 . . Atlas-SNP RPS6KC1 26750 hgsc.bcm.edu hg19 1 213415488 213415488 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RPS6KC1 NM_012424 exon11 c.A2669G p.D890G ACCTTGATAAAAA . 124.0 5.0 132.0 0.0 . 114 . . Atlas-SNP DNAH14 127602 hgsc.bcm.edu hg19 1 225328438 225328438 + Missense_Mutation SNP G G T rs202118490 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DNAH14 NM_001373 exon27 c.G4172T p.R1391I GAGAGAGATATAT . 28.0 13.0 21.0 0.0 . 300 . . Atlas-SNP SIPA1L2 57568 hgsc.bcm.edu hg19 1 232650005 232650005 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SIPA1L2 NM_020808 exon1 c.G1081T p.A361S CAGATGCCCCAGT . 70.0 48.0 61.0 0.0 . 218 . . Atlas-SNP SH3BP5L 80851 hgsc.bcm.edu hg19 1 249106273 249106273 + Silent SNP C C G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SH3BP5L NM_030645 exon7 c.G1008C p.L336L CAGGCTCAGCAGA . 83.0 12.0 63.0 0.0 . 47 . . Atlas-SNP PXDN 7837 hgsc.bcm.edu hg19 2 1664712 1664712 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PXDN NM_012293 exon14 c.A1778G p.E593G ACACACTCATAGC . 75.0 4.0 78.0 0.0 . 255 . . Atlas-SNP ASAP2 8853 hgsc.bcm.edu hg19 2 9531316 9531316 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ASAP2 NM_003887 exon23 c.A2509G p.T837A CGCGTGACATCTA . 99.0 4.0 113.0 0.0 . 91 . . Atlas-SNP KLF11 8462 hgsc.bcm.edu hg19 2 10188645 10188645 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KLF11 NM_003597 exon3 c.A1181G p.Y394C GGAACTATGTATG . 78.0 4.0 81.0 0.0 . 45 . . Atlas-SNP PDIA6 10130 hgsc.bcm.edu hg19 2 10925108 10925108 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PDIA6 NM_005742 exon12 c.T1206C p.A402A AGGGAAAGCCCCG . 79.0 4.0 88.0 0.0 . 31 . . Atlas-SNP GREB1 9687 hgsc.bcm.edu hg19 2 11772120 11772120 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GREB1 NM_014668 exon27 c.A4697G p.D1566G CAATGGACGGTGC . 146.0 6.0 187.0 0.0 . 308 . . Atlas-SNP DDX1 1653 hgsc.bcm.edu hg19 2 15746378 15746378 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DDX1 NM_004939 exon12 c.A807G p.S269S CAAATCACAGCAC . 149.0 6.0 158.0 0.0 . 70 . . Atlas-SNP SMC6 79677 hgsc.bcm.edu hg19 2 17922879 17922879 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SMC6 NM_001142286 exon4 c.A238G p.S80G ACTTACTTCCATT . 60.0 4.0 79.0 0.0 . 102 . . Atlas-SNP ASXL2 55252 hgsc.bcm.edu hg19 2 25965337 25965337 + Missense_Mutation SNP C C G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ASXL2 NM_018263 exon12 c.G3869C p.S1290T GTAGAACTGAAAA . 138.0 10.0 187.0 0.0 . 217 . . Atlas-SNP CGREF1 10669 hgsc.bcm.edu hg19 2 27325406 27325406 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CGREF1 NM_001166239 exon3 c.A134G p.Q45R TGCTCCTGGCCTG . 74.0 4.0 68.0 0.0 . 31 . . Atlas-SNP CAD 790 hgsc.bcm.edu hg19 2 27458485 27458485 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CAD NM_004341 exon25 c.T4051C p.F1351L GCTGACTTCTACA . 112.0 6.0 107.0 0.0 . 199 . . Atlas-SNP C2orf16 84226 hgsc.bcm.edu hg19 2 27802654 27802654 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C2orf16 NM_032266 exon1 c.T3215C p.L1072P ATTATCTTTCCCA . 108.0 5.0 142.0 0.0 . 357 . . Atlas-SNP C2orf16 84226 hgsc.bcm.edu hg19 2 27803186 27803186 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C2orf16 NM_032266 exon1 c.A3747G p.R1249R AACTAGAGCACCT . 116.0 5.0 161.0 0.0 . 357 . . Atlas-SNP CCDC121 79635 hgsc.bcm.edu hg19 2 27851424 27851424 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCDC121 NM_001142683 exon1 c.C207T p.P69P CTCAAAGGGTCTC . 123.0 5.0 153.0 0.0 . 43 . . Atlas-SNP RBKS 64080 hgsc.bcm.edu hg19 2 28004570 28004570 + Missense_Mutation SNP G G T rs200310841 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RBKS NM_022128 exon8 c.C881A p.S294Y AAATTGGATCTGT . 83.0 4.0 146.0 0.0 . 23 . . Atlas-SNP XDH 7498 hgsc.bcm.edu hg19 2 31604573 31604573 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . XDH NM_000379 exon12 c.T1058C p.I353T GCAGTGATGATGT . 92.0 4.0 105.0 0.0 . 191 . . Atlas-SNP SLC30A6 55676 hgsc.bcm.edu hg19 2 32399138 32399138 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLC30A6 NM_001193513 exon3 c.A97G p.K33E TCCTGGAAGATAC . 271.0 103.0 367.0 0.0 . 37 . . Atlas-SNP STRN 6801 hgsc.bcm.edu hg19 2 37094974 37094974 + Nonsense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b STRN,extremity,malignant_melanoma,0,1 STRN NM_003162 exon12 c.T1530A p.Y510X GAATGTATAGATA . 65.0 3.0 91.0 0.0 . 71 . . Atlas-SNP NRXN1 9378 hgsc.bcm.edu hg19 2 51254792 51254792 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NRXN1 NM_004801 exon2 c.A620G p.E207G GGCGGCTCATCGT . 114.0 5.0 119.0 0.0 . 1118 . . Atlas-SNP SPTBN1 6711 hgsc.bcm.edu hg19 2 54753654 54753654 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPTBN1 NM_003128 exon2 c.G99T p.E33D CAATGAGAACAGC . 95.0 4.0 103.0 0.0 . 378 . . Atlas-SNP EHBP1 23301 hgsc.bcm.edu hg19 2 63086387 63086387 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EHBP1 NM_015252 exon9 c.G823A p.A275T CCTGATGCTGCAG . 80.0 4.0 128.0 0.0 . 127 . . Atlas-SNP SERTAD2 9792 hgsc.bcm.edu hg19 2 64863856 64863856 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SERTAD2 NM_014755 exon2 c.C150T p.N50N CCTGTGGTTATAG . 220.0 21.0 237.0 0.0 . 32 . . Atlas-SNP AAK1 22848 hgsc.bcm.edu hg19 2 69741753 69741753 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AAK1 NM_014911 exon13 c.G1626A p.Q542Q CTGTTGCTGTTGT . 134.0 14.0 147.0 0.0 . 121 . . Atlas-SNP VAX2 25806 hgsc.bcm.edu hg19 2 71148294 71148294 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . VAX2 NM_012476 exon2 c.C314T p.T105I AGCGGACACGTAC . 95.0 4.0 144.0 0.0 . 27 . . Atlas-SNP KDM3A 55818 hgsc.bcm.edu hg19 2 86705806 86705806 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KDM3A NM_001146688 exon15 c.A2264G p.N755S GTTCAAACAGGCA . 87.0 4.0 132.0 0.0 . 179 . . Atlas-SNP PROM2 150696 hgsc.bcm.edu hg19 2 95940507 95940507 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PROM2 NM_001165977 exon1 c.A174G p.G58G GCCAGGACTCCTG . 78.0 4.0 99.0 0.0 . 78 . . Atlas-SNP SNRNP200 23020 hgsc.bcm.edu hg19 2 96965077 96965077 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SNRNP200 NM_014014 exon6 c.T719C p.L240P GCCGAGAGGGTGC . 100.0 5.0 119.0 0.0 . 195 . . Atlas-SNP ARID5A 10865 hgsc.bcm.edu hg19 2 97216921 97216921 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ARID5A NM_212481 exon7 c.A656G p.Q219R AACAGCAGGGCCT . 93.0 4.0 122.0 0.0 . 31 . . Atlas-SNP CLASP1 23332 hgsc.bcm.edu hg19 2 122205082 122205082 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CLASP1 NM_001207051 exon19 c.T1743C p.A581A TGTAGAAGCTTTA . 83.0 4.0 109.0 0.0 . 135 . . Atlas-SNP CNTNAP5 129684 hgsc.bcm.edu hg19 2 125367485 125367485 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CNTNAP5 NM_130773 exon12 c.T1861C p.C621R GTGTACTGCAATA . 42.0 4.0 71.0 0.0 . 405 . . Atlas-SNP GPR148 344561 hgsc.bcm.edu hg19 2 131486858 131486858 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GPR148 NM_207364 exon1 c.C134T p.P45L GGGTGCCCAGCTC . 93.0 4.0 103.0 0.0 . 54 . . Atlas-SNP THSD7B 80731 hgsc.bcm.edu hg19 2 138373887 138373887 + Splice_Site SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . THSD7B NM_001080427 exon17 c.3477+1G>A . TAACAGGTACAGT . 98.0 4.0 103.0 0.0 . 506 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141707824 141707824 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRP1B NM_018557 exon20 c.A3116G p.Q1039R TTGATCTGGGCTT . 124.0 5.0 133.0 0.0 . 1315 . . Atlas-SNP ZEB2 9839 hgsc.bcm.edu hg19 2 145162558 145162558 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZEB2 NM_014795 exon5 c.A437G p.E146G AAGTATTCCTCAA . 95.0 4.0 95.0 0.0 . 218 . . Atlas-SNP RIF1 55183 hgsc.bcm.edu hg19 2 152316610 152316610 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RIF1 NM_018151 exon26 c.G3052A p.E1018K AAAAAAGAAAATA . 186.0 21.0 137.0 0.0 . 244 . . Atlas-SNP ACVR1 90 hgsc.bcm.edu hg19 2 158636913 158636913 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ACVR1 NM_001105 exon4 c.A267G p.Q89Q CACGGCTTGGCCA . 86.0 4.0 102.0 0.0 . 52 . . Atlas-SNP FIGN 55137 hgsc.bcm.edu hg19 2 164467712 164467712 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FIGN NM_018086 exon3 c.T630C p.H210H AGACGGATGAGGT . 167.0 7.0 198.0 0.0 . 106 . . Atlas-SNP SP3 6670 hgsc.bcm.edu hg19 2 174820457 174820457 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SP3 NM_003111 exon4 c.A783G p.P261P ATTTCCTGGCAGA . 71.0 4.0 90.0 0.0 . 82 . . Atlas-SNP PDE11A 50940 hgsc.bcm.edu hg19 2 178494173 178494173 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PDE11A NM_016953 exon20 c.C2764T p.P922S TGGCAGGGGAGGA . 254.0 13.0 268.0 0.0 . 283 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179667053 179667053 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TTN NM_001267550 exon3 c.A107G p.E36G CTCACCTCAGGAA . 120.0 5.0 146.0 0.0 . 18412 . . Atlas-SNP RFTN2 130132 hgsc.bcm.edu hg19 2 198480674 198480674 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RFTN2 NM_144629 exon7 c.T1080C p.P360P CAGCAGAGGGCCA . 98.0 4.0 108.0 0.0 . 68 . . Atlas-SNP FASTKD2 22868 hgsc.bcm.edu hg19 2 207652780 207652780 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FASTKD2 NM_001136193 exon9 c.T1714C p.S572P CCATCGTCACATA . 66.0 4.0 95.0 0.0 . 49 . . Atlas-SNP MAP2 4133 hgsc.bcm.edu hg19 2 210558428 210558428 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MAP2 NM_002374 exon7 c.A1534G p.M512V TCAGCCATGACCT . 76.0 4.0 107.0 0.0 . 372 . . Atlas-SNP RQCD1 9125 hgsc.bcm.edu hg19 2 219447748 219447748 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RQCD1 NM_001271634 exon3 c.T259C p.S87P CACCAGTCTAACA . 95.0 4.0 130.0 0.0 . 32 . . Atlas-SNP OBSL1 23363 hgsc.bcm.edu hg19 2 220432976 220432976 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b OBSL1_ENST00000404537,NS,carcinoma,0,1 OBSL1 NM_001173431 exon2 c.A1083G p.E361E TTTACATTCCAGC . 40.0 2.0 88.0 1.0 . 120 . . Atlas-SNP STK11IP 114790 hgsc.bcm.edu hg19 2 220470738 220470738 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . STK11IP NM_052902 exon9 c.A839G p.H280R AAGGACACCGGGA . 116.0 5.0 172.0 0.0 . 152 . . Atlas-SNP COL4A3 1285 hgsc.bcm.edu hg19 2 228162401 228162401 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . COL4A3 NM_000091 exon42 c.G3577T p.D1193Y AAAGGAGACAGGG . 95.0 4.0 144.0 0.0 . 293 . . Atlas-SNP HTR2B 3357 hgsc.bcm.edu hg19 2 231973880 231973880 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HTR2B NM_000867 exon4 c.C797T p.T266I AAAACTGTAGACA . 147.0 57.0 248.0 0.0 . 33 . . Atlas-SNP NCL 4691 hgsc.bcm.edu hg19 2 232325390 232325390 + Silent SNP C C T rs371798454 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NCL NM_005381 exon4 c.G801A p.E267E CTCCTCCTCTTCT . 208.0 17.0 318.0 0.0 . 80 . . Atlas-SNP TRPM8 79054 hgsc.bcm.edu hg19 2 234854669 234854669 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b TRPM8,NS,carcinoma,0,1 TRPM8 NM_024080 exon7 c.T869C p.I290T GCACTATTCAAGG . 77.0 4.0 95.0 0.0 . 146 . . Atlas-SNP CXCR7 57007 hgsc.bcm.edu hg19 2 237489664 237489664 + Missense_Mutation SNP G G T rs143561143 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b CXCR7_ENST00000272928,caecum,carcinoma,0,2 CXCR7 NM_020311 exon2 c.G556T p.V186F AAGACCGTCACGT . 89.0 4.0 85.0 0.0 . 72 . G|0.999;A|0.001 Atlas-SNP SEPT2 4735 hgsc.bcm.edu hg19 2 242287583 242287583 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SEPT2 NM_001008491 exon12 c.A961G p.I321V GACCAGATCTTGC . 100.0 4.0 160.0 0.0 . 33 . . Atlas-SNP SSUH2 51066 hgsc.bcm.edu hg19 3 8669446 8669446 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_001256748 exon8 c.A612G p.G204G CTTGGCTCCGCAG . 132.0 7.0 138.0 0.0 . . . . Atlas-SNP SRGAP3 9901 hgsc.bcm.edu hg19 3 9146431 9146431 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SRGAP3 NM_014850 exon3 c.T356C p.I119T ATGAAGATGTCAT . 99.0 4.0 110.0 0.0 . 146 . . Atlas-SNP CAND2 23066 hgsc.bcm.edu hg19 3 12854590 12854590 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CAND2 NM_001162499 exon6 c.A859G p.R287G TTCTTGAGGAAGT . 90.0 4.0 116.0 0.0 . 138 . . Atlas-SNP TOP2B 7155 hgsc.bcm.edu hg19 3 25654010 25654010 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TOP2B NM_001068 exon28 c.A3767G p.K1256R ACCTTCTTCTTCT . 102.0 5.0 90.0 0.0 . 98 . . Atlas-SNP LRRC3B 116135 hgsc.bcm.edu hg19 3 26751506 26751506 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRRC3B NM_052953 exon2 c.T343C p.L115L GAAACCTTGCAGA . 81.0 4.0 76.0 0.0 . 51 . . Atlas-SNP LRRC3B 116135 hgsc.bcm.edu hg19 3 26751740 26751740 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRRC3B NM_052953 exon2 c.G577T p.D193Y GACGCTGACCTTT . 146.0 10.0 197.0 0.0 . 51 . . Atlas-SNP ZNF860 344787 hgsc.bcm.edu hg19 3 32030625 32030625 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF860 NM_001137674 exon2 c.T54C p.A18A CATGGCTCTTCCT . 124.0 5.0 206.0 0.0 . 96 . . Atlas-SNP ZNF860 344787 hgsc.bcm.edu hg19 3 32032133 32032133 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF860 NM_001137674 exon2 c.A1562G p.Q521R TTAATCAACAAGC . 107.0 5.0 141.0 0.0 . 96 . . Atlas-SNP XYLB 9942 hgsc.bcm.edu hg19 3 38442465 38442465 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . XYLB NM_005108 exon18 c.G1522A p.G508R AGCCCGGGAGCTT . 98.0 4.0 134.0 0.0 . 50 . . Atlas-SNP EXOG 9941 hgsc.bcm.edu hg19 3 38539163 38539163 + Missense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EXOG NM_005107 exon2 c.A207T p.L69F CCCTTTAACTGGA . 81.0 5.0 115.0 0.0 . 29 . . Atlas-SNP EXOG 9941 hgsc.bcm.edu hg19 3 38539164 38539164 + Missense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EXOG NM_005107 exon2 c.A208T p.T70S CCTTTAACTGGAA . 81.0 4.0 117.0 0.0 . 29 . . Atlas-SNP RPSA 3921 hgsc.bcm.edu hg19 3 39453157 39453157 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RPSA NM_001012321 exon4 c.T516C p.G172G AGTGGGTTTGATG . 83.0 4.0 112.0 0.0 . 15 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266104 41266104 + Missense_Mutation SNP G G T rs28931589 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b CTNNB1,gallbladder,other,0,161 CTNNB1 NM_001098209 exon3 c.G101T p.G34V ACTCTGGAATCCA . 209.0 13.0 260.0 1.0 . 4904 . . Atlas-SNP LRRC2 79442 hgsc.bcm.edu hg19 3 46569020 46569020 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRRC2 NM_024512 exon7 c.T825C p.L275L ATAGGGAAGGTAG . 100.0 4.0 99.0 0.0 . 37 . . Atlas-SNP ALS2CL 259173 hgsc.bcm.edu hg19 3 46722798 46722798 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ALS2CL NM_001190707 exon13 c.G1374A p.R458R CGTGTACCTGAAG . 152.0 53.0 211.0 0.0 . 78 . . Atlas-SNP NBEAL2 23218 hgsc.bcm.edu hg19 3 47043918 47043918 + Missense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NBEAL2 NM_015175 exon32 c.A5209T p.M1737L GACCTTATGTCAG . 91.0 26.0 92.0 0.0 . 267 . . Atlas-SNP PTPN23 25930 hgsc.bcm.edu hg19 3 47454662 47454662 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PTPN23 NM_015466 exon25 c.T4898C p.L1633P GGACACTCAACAA . 87.0 4.0 94.0 0.0 . 85 . . Atlas-SNP LAMB2 3913 hgsc.bcm.edu hg19 3 49162306 49162306 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LAMB2 NM_002292 exon21 c.A2937G p.P979P GCCACCTGGCCTT . 43.0 4.0 54.0 0.0 . 156 . . Atlas-SNP GNAT1 2779 hgsc.bcm.edu hg19 3 50231568 50231568 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GNAT1 NM_144499 exon6 c.A622G p.I208V AAGTGGATCCACT . 88.0 4.0 91.0 0.0 . 39 . . Atlas-SNP SLC38A3 10991 hgsc.bcm.edu hg19 3 50251833 50251833 + Splice_Site SNP A A G rs201228948 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLC38A3 NM_006841 exon3 c.102-1A>G . GCCTACAGGTCGA . 61.0 5.0 68.0 0.0 . 22 . . Atlas-SNP ZMYND10 51364 hgsc.bcm.edu hg19 3 50380447 50380447 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZMYND10 NM_015896 exon7 c.T602C p.L201P AGAGAGAGGCTAG . 143.0 6.0 172.0 0.0 . 37 . . Atlas-SNP TLR9 54106 hgsc.bcm.edu hg19 3 52257674 52257674 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TLR9 NM_017442 exon2 c.T658C p.S220P GGCTGGAAGGCAG . 87.0 4.0 113.0 0.0 . 72 . . Atlas-SNP RFT1 91869 hgsc.bcm.edu hg19 3 53126534 53126534 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RFT1 NM_052859 exon12 c.T1309C p.F437L TGTTAAAGCAGTT . 83.0 4.0 78.0 0.0 . 34 . . Atlas-SNP ADAMTS9 56999 hgsc.bcm.edu hg19 3 64524966 64524966 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ADAMTS9 NM_182920 exon37 c.T5526C p.T1842T TAAGTCAGTGGCT . 88.0 5.0 105.0 0.0 . 206 . . Atlas-SNP MAGI1 9223 hgsc.bcm.edu hg19 3 65342529 65342529 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MAGI1 NM_001033057 exon23 c.A3913G p.R1305G CGTCCCTCCGTCC . 161.0 11.0 146.0 0.0 . 481 . . Atlas-SNP IQCB1 9657 hgsc.bcm.edu hg19 3 121527778 121527778 + Nonsense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IQCB1 NM_001023570 exon6 c.G472T p.E158X TAAGTTCAACATG . 271.0 103.0 240.0 0.0 . 50 . . Atlas-SNP HEG1 57493 hgsc.bcm.edu hg19 3 124724182 124724182 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HEG1 NM_020733 exon9 c.A3224G p.K1075R GTTCTCTTTAATT . 58.0 4.0 88.0 0.0 . 109 . . Atlas-SNP CCDC37 348807 hgsc.bcm.edu hg19 3 126152005 126152005 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCDC37 NM_182628 exon14 c.A1380G p.K460K GCTCAAAGCCCGA . 100.0 4.0 113.0 0.0 . 69 . . Atlas-SNP COPG1 22820 hgsc.bcm.edu hg19 3 128984637 128984637 + Splice_Site SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_016128 exon14 c.1468+2T>C . GGCAGGTAGGTCT . 96.0 4.0 123.0 0.0 . . . . Atlas-SNP COL6A5 256076 hgsc.bcm.edu hg19 3 130174346 130174346 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . COL6A5 NM_153264 exon37 c.T6626C p.I2209T GCTTCATTGGCCA . 277.0 38.0 301.0 0.0 . 205 . . Atlas-SNP DNAJC13 23317 hgsc.bcm.edu hg19 3 132172158 132172158 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DNAJC13 NM_015268 exon7 c.A554G p.E185G CGTCAGAGCAAAG . 118.0 5.0 119.0 0.0 . 253 . . Atlas-SNP CEP63 80254 hgsc.bcm.edu hg19 3 134270790 134270790 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CEP63 NM_025180 exon13 c.C1403T p.S468L TGGAGTCACTCAA . 93.0 4.0 83.0 0.0 . 56 . . Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142226796 142226796 + Missense_Mutation SNP G G T rs139135398 alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ATR NM_001184 exon28 c.C5008A p.Q1670K GTTCCTGAATATT . 92.0 4.0 111.0 0.0 . 285 . G|1.000;C|0.000 Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142226823 142226823 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ATR NM_001184 exon28 c.T4981C p.F1661L TAATAAATGATTC . 114.0 5.0 139.0 0.0 . 285 . . Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142272231 142272231 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ATR NM_001184 exon13 c.A2643G p.K881K ATCTCCTTTTGCG . 97.0 4.0 112.0 0.0 . 285 . . Atlas-SNP AADAC 13 hgsc.bcm.edu hg19 3 151545789 151545789 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AADAC NM_001086 exon5 c.T1029C p.D343D ATATGATCTCTTA . 98.0 4.0 164.0 0.0 . 49 . . Atlas-SNP DHX36 170506 hgsc.bcm.edu hg19 3 153998561 153998561 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DHX36 NM_020865 exon21 c.A2467G p.I823V AATTTATATTAGA . 88.0 4.0 109.0 0.0 . 98 . . Atlas-SNP GMPS 8833 hgsc.bcm.edu hg19 3 155629067 155629067 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GMPS NM_003875 exon7 c.A885G p.K295K GGTCAAAGGTATT . 89.0 4.0 117.0 0.0 . 70 . . Atlas-SNP SLITRK3 22865 hgsc.bcm.edu hg19 3 164906629 164906629 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLITRK3 NM_014926 exon2 c.T1990C p.F664L AGAAAAACAGAAC . 98.0 4.0 109.0 0.0 . 263 . . Atlas-SNP TBCCD1 55171 hgsc.bcm.edu hg19 3 186272765 186272765 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TBCCD1 NM_001134415 exon5 c.G968A p.S323N TCTGAGCTCTTAG . 156.0 12.0 171.0 0.0 . 42 . . Atlas-SNP IL1RAP 3556 hgsc.bcm.edu hg19 3 190366343 190366343 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IL1RAP NM_001167929 exon11 c.T1562C p.L521P CGGTGCTCACGGT . 81.0 4.0 140.0 0.0 . 96 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3227454 3227454 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HTT NM_002111 exon57 c.G7832T p.S2611I GCATGAGCTACAA . 123.0 5.0 136.0 0.0 . 221 . . Atlas-SNP EVC2 132884 hgsc.bcm.edu hg19 4 5624634 5624634 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EVC2 NM_147127 exon14 c.A2131G p.R711G GGCTCCTCTTCTG . 135.0 7.0 160.0 0.0 . 202 . . Atlas-SNP C1QTNF7 114905 hgsc.bcm.edu hg19 4 15444246 15444246 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C1QTNF7 NM_001135170 exon3 c.T714C p.A238A TGTGGCTTCGGGG . 90.0 4.0 95.0 0.0 . 36 . . Atlas-SNP SEPSECS 51091 hgsc.bcm.edu hg19 4 25156728 25156728 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SEPSECS NM_016955 exon5 c.T593C p.L198P GTACGCAGCTCGT . 101.0 11.0 109.0 0.0 . 55 . . Atlas-SNP TBC1D19 55296 hgsc.bcm.edu hg19 4 26755500 26755500 + Silent SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TBC1D19 NM_018317 exon20 c.G1494T p.L498L ATCACTGGCTGCA . 97.0 4.0 113.0 0.0 . 53 . . Atlas-SNP UGDH 7358 hgsc.bcm.edu hg19 4 39510222 39510222 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . UGDH NM_003359 exon7 c.T870C p.A290A ATTCAGAGCCTCA . 50.0 4.0 84.0 0.0 . 52 . . Atlas-SNP GABRG1 2565 hgsc.bcm.edu hg19 4 46067446 46067446 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GABRG1 NM_173536 exon4 c.C477T p.H159H TATCCAGTGAGCA . 77.0 4.0 117.0 0.0 . 172 . . Atlas-SNP NPFFR2 10886 hgsc.bcm.edu hg19 4 73013093 73013093 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b NPFFR2,NS,carcinoma,0,1 NPFFR2 NM_004885 exon4 c.T1133C p.L378P AGATGCTCCTGAT . 75.0 3.0 117.0 0.0 . 98 . . Atlas-SNP ALB 213 hgsc.bcm.edu hg19 4 74274385 74274385 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ALB NM_000477 exon4 c.T345C p.C115C CTGCTGTGCAAAA . 118.0 5.0 212.0 0.0 . 132 . . Atlas-SNP RASSF6 166824 hgsc.bcm.edu hg19 4 74459214 74459214 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RASSF6 NM_201431 exon4 c.T337C p.S113P AAGAAGAGAATGG . 149.0 6.0 191.0 0.0 . 68 . . Atlas-SNP C4orf22 255119 hgsc.bcm.edu hg19 4 81283933 81283933 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C4orf22 NM_152770 exon2 c.T137C p.V46A AGTTGGTGGAGCT . 86.0 4.0 116.0 0.0 . 35 . . Atlas-SNP WDFY3 23001 hgsc.bcm.edu hg19 4 85731416 85731416 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . WDFY3 NM_014991 exon14 c.T1969C p.L657L CGAGCAAGGATGT . 47.0 4.0 87.0 0.0 . 314 . . Atlas-SNP MEPE 56955 hgsc.bcm.edu hg19 4 88766433 88766433 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MEPE NM_020203 exon4 c.A413G p.D138G TACATGACCAAGA . 86.0 4.0 182.0 0.0 . 86 . . Atlas-SNP CCDC109B 55013 hgsc.bcm.edu hg19 4 110580168 110580168 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCDC109B NM_017918 exon2 c.T101C p.V34A TGTAGGTTTTGCG . 103.0 6.0 182.0 0.0 . 47 . . Atlas-SNP CASP6 839 hgsc.bcm.edu hg19 4 110612018 110612018 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CASP6 NM_001226 exon6 c.T631C p.S211P CAACAGAGTAACA . 104.0 5.0 105.0 0.0 . 25 . . Atlas-SNP CCNA2 890 hgsc.bcm.edu hg19 4 122738818 122738818 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCNA2 NM_001237 exon8 c.A1274G p.N425S GGTGGGTTGAGGA . 86.0 4.0 104.0 0.0 . 30 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123210267 123210267 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA1109 NM_015312 exon52 c.C9308T p.T3103I ATCTTACAACTGA . 113.0 5.0 165.0 0.0 . 424 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126371393 126371393 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FAT4 NM_024582 exon9 c.T9222C p.T3074T AGCAACTGTTCAC . 97.0 4.0 135.0 0.0 . 1752 . . Atlas-SNP PHF17 79960 hgsc.bcm.edu hg19 4 129782996 129782996 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PHF17 NM_199320 exon9 c.A1119G p.K373K TAGGAAACCCGAG . 92.0 4.0 167.0 0.0 . 63 . . Atlas-SNP ARHGAP10 79658 hgsc.bcm.edu hg19 4 148802995 148802995 + Nonsense_Mutation SNP G G T rs138388284 alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ARHGAP10 NM_024605 exon10 c.G946T p.G316X GGGGACGGAGAGG . 110.0 38.0 187.0 0.0 . 92 . G|1.000;A|0.000 Atlas-SNP ARHGAP10 79658 hgsc.bcm.edu hg19 4 148984403 148984403 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ARHGAP10 NM_024605 exon21 c.C2132A p.P711H CGTCCCCTTTCCC . 131.0 30.0 148.0 0.0 . 92 . . Atlas-SNP FAM160A1 729830 hgsc.bcm.edu hg19 4 152571430 152571430 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FAM160A1 NM_001109977 exon11 c.C2237T p.P746L CCCACCCGGAGAG . 79.0 4.0 87.0 0.0 . 60 . . Atlas-SNP FHDC1 85462 hgsc.bcm.edu hg19 4 153884235 153884235 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FHDC1 NM_033393 exon7 c.A982G p.T328A GCAGACACAAAAG . 68.0 4.0 93.0 0.0 . 102 . . Atlas-SNP TRIM2 23321 hgsc.bcm.edu hg19 4 154216477 154216477 + Nonsense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b TRIM2_ENST00000338700,colon,carcinoma,0,2 TRIM2 NM_015271 exon6 c.C799T p.Q267X CAGTCGCAGCTGG . 49.0 3.0 63.0 0.0 . 105 . . Atlas-SNP IRF2 3660 hgsc.bcm.edu hg19 4 185340657 185340657 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IRF2 NM_002199 exon3 c.T153C p.D51D TGGTGCATCTTTT . 74.0 4.0 96.0 0.0 . 53 . . Atlas-SNP TRIML1 339976 hgsc.bcm.edu hg19 4 189068092 189068092 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b TRIML1,NS,carcinoma,0,1 TRIML1 NM_178556 exon6 c.G973A p.D325N AGATTTGACCAGT . 109.0 5.0 127.0 0.0 . 126 . . Atlas-SNP EXOC3 11336 hgsc.bcm.edu hg19 5 466898 466898 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EXOC3 NM_007277 exon13 c.A2123G p.K708R ACATGAAGCAGAC . 109.0 6.0 147.0 0.0 . 54 . . Atlas-SNP BRD9 65980 hgsc.bcm.edu hg19 5 864653 864653 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . BRD9 NM_023924 exon16 c.A1724G p.Q575R TCTGGCTGCTCCC . 63.0 4.0 70.0 0.0 . 113 . . Atlas-SNP LPCAT1 79888 hgsc.bcm.edu hg19 5 1463792 1463792 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LPCAT1 NM_024830 exon14 c.A1579G p.K527E CAGGCTTCCGCCC . 90.0 4.0 115.0 0.0 . 70 . . Atlas-SNP KIAA0947 23379 hgsc.bcm.edu hg19 5 5461628 5461628 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA0947 NM_015325 exon13 c.A2181G p.K727K TACAAAAGTAGTA . 102.0 5.0 116.0 0.0 . 301 . . Atlas-SNP KIAA0947 23379 hgsc.bcm.edu hg19 5 5461675 5461675 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA0947 NM_015325 exon13 c.T2228C p.F743S CAGTATTTATGAA . 81.0 4.0 99.0 0.0 . 301 . . Atlas-SNP SEMA5A 9037 hgsc.bcm.edu hg19 5 9122917 9122917 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SEMA5A NM_003966 exon14 c.T1632C p.G544G CCACACACCAAAG . 135.0 6.0 158.0 0.0 . 236 . . Atlas-SNP FBXL7 23194 hgsc.bcm.edu hg19 5 15936656 15936656 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FBXL7 NM_012304 exon4 c.G837A p.M279I GGACATGACGGAC . 63.0 4.0 62.0 0.0 . 138 . . Atlas-SNP CDH18 1016 hgsc.bcm.edu hg19 5 19544066 19544066 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CDH18 NM_001167667 exon9 c.T1302C p.D434D ATTGGCATCAATG . 114.0 6.0 169.0 0.0 . 561 . . Atlas-SNP FYB 2533 hgsc.bcm.edu hg19 5 39130699 39130699 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FYB NM_001243093 exon10 c.A1863G p.G621G TCCACTTCCACTC . 73.0 5.0 72.0 0.0 . 354 . . Atlas-SNP FGF10 2255 hgsc.bcm.edu hg19 5 44388683 44388683 + Silent SNP A A G rs140279180 bycluster;byfrequency;alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FGF10 NM_004465 exon1 c.T102C p.P34P GGTGACAGGGACG . 141.0 6.0 128.0 0.0 . 40 . A|1.000;C|0.000 Atlas-SNP ADAMTS6 11174 hgsc.bcm.edu hg19 5 64510631 64510631 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ADAMTS6 NM_197941 exon20 c.T2565C p.T855T AGCACAAGTAGCT . 110.0 5.0 119.0 0.0 . 174 . . Atlas-SNP PPWD1 23398 hgsc.bcm.edu hg19 5 64868003 64868003 + Missense_Mutation SNP T T C rs373825399 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PPWD1 NM_015342 exon5 c.T859C p.C287R AGCGTATGTTTTT . 75.0 4.0 84.0 0.0 . 47 . . Atlas-SNP TRIM23 373 hgsc.bcm.edu hg19 5 64890421 64890421 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TRIM23 NM_033228 exon10 c.A1472G p.H491R TCGCTGTGTGCTT . 74.0 4.0 85.0 0.0 . 73 . . Atlas-SNP SV2C 22987 hgsc.bcm.edu hg19 5 75505685 75505685 + Missense_Mutation SNP A A C rs370314313 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SV2C NM_014979 exon4 c.A886C p.M296L TCTGCCATGGCCT . 79.0 4.0 106.0 0.0 . 97 . . Atlas-SNP AP3B1 8546 hgsc.bcm.edu hg19 5 77563357 77563357 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AP3B1 NM_003664 exon2 c.A191G p.K64R ATCCGCTTCATAG . 88.0 4.0 94.0 0.0 . 94 . . Atlas-SNP RASGRF2 5924 hgsc.bcm.edu hg19 5 80511700 80511700 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RASGRF2 NM_006909 exon24 c.A3360G p.K1120K GACAAAAGCTCTA . 86.0 4.0 105.0 0.0 . 165 . . Atlas-SNP XRCC4 7518 hgsc.bcm.edu hg19 5 82499472 82499472 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . XRCC4 NM_003401 exon5 c.A584G p.H195R GTTTGCATAATAA . 94.0 4.0 92.0 0.0 . 37 . . Atlas-SNP ERAP1 51752 hgsc.bcm.edu hg19 5 96119656 96119656 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ERAP1 NM_001198541 exon14 c.A2072G p.D691G TTCATATCTCTTT . 89.0 4.0 110.0 0.0 . 59 . . Atlas-SNP ST8SIA4 7903 hgsc.bcm.edu hg19 5 100222086 100222086 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b ST8SIA4,colon,carcinoma,0,2 ST8SIA4 NM_175052 exon3 c.A464G p.E155G CCACATTCACTGT . 169.0 7.0 201.0 0.0 . 77 . . Atlas-SNP MAN2A1 4124 hgsc.bcm.edu hg19 5 109190938 109190938 + Missense_Mutation SNP C C T rs200723635 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b MAN2A1,colon,carcinoma,0,1 MAN2A1 NM_002372 exon20 c.C3074T p.S1025F AGTTCTCCTCACC . 26.0 15.0 3.0 0.0 . 136 . . Atlas-SNP YTHDC2 64848 hgsc.bcm.edu hg19 5 112927702 112927702 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . YTHDC2 NM_022828 exon28 c.A4039G p.R1347G TTTTCTAGGATGT . 87.0 4.0 84.0 0.0 . 118 . . Atlas-SNP TIFAB 497189 hgsc.bcm.edu hg19 5 134785146 134785146 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TIFAB NM_001099221 exon2 c.T484C p.X162Q TCTGCTACCCTGA . 81.0 4.0 90.0 0.0 . 23 . . Atlas-SNP PKD2L2 27039 hgsc.bcm.edu hg19 5 137271514 137271514 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PKD2L2 NM_014386 exon13 c.A1700G p.K567R TGAAAAAATGGAA . 92.0 4.0 71.0 0.0 . 68 . . Atlas-SNP PCDHA3 56145 hgsc.bcm.edu hg19 5 140180864 140180864 + Missense_Mutation SNP A A C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PCDHA3 NM_031497 exon1 c.A82C p.S28R GTGGGGAGCGGCC . 95.0 4.0 83.0 0.0 . 396 . . Atlas-SNP PCDHA11 56138 hgsc.bcm.edu hg19 5 140250200 140250200 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PCDHA11 NM_018902 exon1 c.G1512A p.S504S GCTGTCGAGCTAC . 142.0 11.0 114.0 0.0 . 209 . . Atlas-SNP PCDHB3 56132 hgsc.bcm.edu hg19 5 140480645 140480645 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b PCDHB3,colon,carcinoma,-1,1 PCDHB3 NM_018937 exon1 c.A412G p.M138V AATGAAATGCATC . 87.0 4.0 65.0 0.0 . 208 . . Atlas-SNP KIF4B 285643 hgsc.bcm.edu hg19 5 154394167 154394167 + Missense_Mutation SNP A A C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIF4B NM_001099293 exon1 c.A748C p.T250P AAGAAAACCAAGG . 269.0 19.0 227.0 0.0 . 307 . . Atlas-SNP HAVCR1 26762 hgsc.bcm.edu hg19 5 156479571 156479571 + Missense_Mutation SNP C C T rs183130208 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HAVCR1 NM_001099414 exon4 c.G474A p.M158I AGTCGTCATTGGA . 339.0 38.0 8.0 0.0 . 84 . . Atlas-SNP ADRA1B 147 hgsc.bcm.edu hg19 5 159399016 159399016 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ADRA1B NM_000679 exon2 c.G1080A p.V360V TTTCGTGCGCATC . 89.0 4.0 83.0 0.0 . 39 . . Atlas-SNP HK3 3101 hgsc.bcm.edu hg19 5 176314004 176314004 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HK3 NM_002115 exon13 c.A1856G p.Q619R CTCACCTGGTCTA . 72.0 4.0 52.0 0.0 . 210 . . Atlas-SNP FGFR4 2264 hgsc.bcm.edu hg19 5 176520392 176520392 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FGFR4 NM_022963 exon8 c.T1117C p.S373P ACCAAGTCTCCCA . 166.0 7.0 113.0 0.0 . 174 . . Atlas-SNP CDYL 9425 hgsc.bcm.edu hg19 6 4892284 4892284 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CDYL NM_004824 exon2 c.A362G p.K121R TCAGGAAGAACAC . 92.0 4.0 87.0 0.0 . 74 . . Atlas-SNP RIOK1 83732 hgsc.bcm.edu hg19 6 7393524 7393524 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RIOK1 NM_031480 exon2 c.A264G p.G88G TGGAGGAAGCAAC . 141.0 8.0 133.0 0.0 . 36 . . Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7581098 7581098 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DSP NM_004415 exon23 c.T4675C p.F1559L ACGCGGTTCCAGA . 99.0 4.0 82.0 0.0 . 306 . . Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7585893 7585893 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DSP NM_004415 exon24 c.C8398T p.L2800L ACTGGGCTGCGCC . 95.0 4.0 66.0 0.0 . 306 . . Atlas-SNP ERVFRD-1 405754 hgsc.bcm.edu hg19 6 11104838 11104838 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ERVFRD-1 NM_207582 exon2 c.T706C p.S236P AAAGAGAATTTCG . 91.0 4.0 57.0 0.0 . 41 . . Atlas-SNP EDN1 1906 hgsc.bcm.edu hg19 6 12296284 12296284 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EDN1 NM_001955 exon5 c.A623G p.N208S CCCACAACCGAGC . 109.0 5.0 86.0 0.0 . 23 . . Atlas-SNP HIST1H1E 3008 hgsc.bcm.edu hg19 6 26156943 26156943 + Nonsense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HIST1H1E NM_005321 exon1 c.A325T p.K109X CTCAACAAGAAGG . 141.0 52.0 119.0 0.0 . 69 . . Atlas-SNP HIST1H1E 3008 hgsc.bcm.edu hg19 6 26156946 26156946 + Nonsense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HIST1H1E NM_005321 exon1 c.A328T p.K110X AACAAGAAGGCGG . 146.0 55.0 110.0 0.0 . 69 . . Atlas-SNP TRIM39 56658 hgsc.bcm.edu hg19 6 30297109 30297109 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TRIM39 NM_172016 exon3 c.T15C p.S5S GACAAGTCTGTTA . 75.0 4.0 63.0 0.0 . 56 . . Atlas-SNP ABCF1 23 hgsc.bcm.edu hg19 6 30550931 30550931 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ABCF1 NM_001025091 exon10 c.G881A p.R294H CCTCCCGCCAAGC . 89.0 4.0 77.0 0.0 . 61 . . Atlas-SNP FLOT1 10211 hgsc.bcm.edu hg19 6 30709964 30709964 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FLOT1 NM_005803 exon2 c.G3A p.M1I GAAAAACATGGTT . 93.0 4.0 72.0 0.0 . 28 . . Atlas-SNP PRRC2A 7916 hgsc.bcm.edu hg19 6 31599743 31599743 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PRRC2A NM_004638 exon16 c.C3293T p.P1098L AAATCCCCAAGCG . 74.0 4.0 50.0 0.0 . 152 . . Atlas-SNP APOM 55937 hgsc.bcm.edu hg19 6 31623826 31623826 + Missense_Mutation SNP A A C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . APOM NM_019101 exon1 c.A83C p.Q28P ACAGTCAACTGAC . 208.0 41.0 158.0 0.0 . 12 . . Atlas-SNP DAAM2 23500 hgsc.bcm.edu hg19 6 39869662 39869662 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DAAM2 NM_001201427 exon25 c.A3056G p.E1019G TGGAGGAGGGAGG . 66.0 11.0 26.0 0.0 . 101 . . Atlas-SNP PEX6 5190 hgsc.bcm.edu hg19 6 42933450 42933450 + Nonsense_Mutation SNP G G A rs267608241 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PEX6 NM_000287 exon13 c.C2440T p.R814X CACTTCGCCCCCG . 184.0 17.0 148.0 0.0 . 44 . . Atlas-SNP SPATS1 221409 hgsc.bcm.edu hg19 6 44336153 44336153 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPATS1 NM_145026 exon6 c.A612G p.P204P AACTCCAGGCGAC . 88.0 4.0 62.0 0.0 . 61 . . Atlas-SNP CDC5L 988 hgsc.bcm.edu hg19 6 44414375 44414375 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b CDC5L,colon,carcinoma,0,1 CDC5L NM_001253 exon16 c.A2336G p.E779G AACAAGAAAGAGA . 70.0 3.0 58.0 0.0 . 86 . . Atlas-SNP GPR111 222611 hgsc.bcm.edu hg19 6 47649442 47649442 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GPR111 NM_153839 exon7 c.A943G p.K315E TTTGAAAAGATCA . 98.0 4.0 78.0 0.0 . 123 . . Atlas-SNP RIMS1 22999 hgsc.bcm.edu hg19 6 72678720 72678720 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RIMS1 NM_014989 exon2 c.T199C p.C67R GCTGCCTGCAAAA . 102.0 10.0 96.0 0.0 . 278 . . Atlas-SNP SNAP91 9892 hgsc.bcm.edu hg19 6 84311120 84311120 + Silent SNP T T A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SNAP91 NM_001242792 exon15 c.A1194T p.A398A AATCTGTGCTTCA . 177.0 109.0 260.0 0.0 . 199 . . Atlas-SNP ZNF292 23036 hgsc.bcm.edu hg19 6 87964908 87964908 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF292 NM_015021 exon8 c.A1561G p.I521V AGAGAGATAAAAC . 101.0 5.0 130.0 0.0 . 479 . . Atlas-SNP GABRR1 2569 hgsc.bcm.edu hg19 6 89890099 89890099 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GABRR1 NM_002042 exon9 c.T1058C p.V353A ACGAACACAAAGC . 74.0 4.0 122.0 0.0 . 63 . . Atlas-SNP METTL24 728464 hgsc.bcm.edu hg19 6 110644068 110644068 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b C6orf186,colon,carcinoma,0,1 . NM_001123364 exon2 c.G326T p.R109L TGCCACCGGGGAC . 46.0 2.0 46.0 0.0 . . . . Atlas-SNP LAMA4 3910 hgsc.bcm.edu hg19 6 112435867 112435867 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LAMA4 NM_001105206 exon37 c.A5205G p.T1735T CTCACCTGTAATT . 99.0 4.0 167.0 0.0 . 227 . . Atlas-SNP STX7 8417 hgsc.bcm.edu hg19 6 132796761 132796761 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . STX7 NM_003569 exon3 c.T126C p.P42P ATCTTGAGGTGTT . 62.0 4.0 63.0 0.0 . 25 . . Atlas-SNP ALDH8A1 64577 hgsc.bcm.edu hg19 6 135239987 135239987 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ALDH8A1 NM_022568 exon7 c.A1030G p.R344G GAGCTCTCTTGAC . 106.0 6.0 124.0 0.0 . 68 . . Atlas-SNP ALDH8A1 64577 hgsc.bcm.edu hg19 6 135253949 135253949 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ALDH8A1 NM_022568 exon5 c.A814G p.I272V CCGGAATGCACTC . 77.0 4.0 112.0 0.0 . 68 . . Atlas-SNP MTFR2 113115 hgsc.bcm.edu hg19 6 136564084 136564084 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_138419 exon4 c.T196C p.S66P TATCAGAGTCTAC . 56.0 4.0 71.0 0.0 . . . . Atlas-SNP MAP3K5 4217 hgsc.bcm.edu hg19 6 136935339 136935339 + Nonsense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MAP3K5 NM_005923 exon16 c.G2236T p.E746X CATTCTCACTGAA . 87.0 4.0 113.0 0.0 . 136 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138629880 138629880 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA1244 NM_020340 exon24 c.A3978G p.K1326K AGGAAAAGGCCAA . 89.0 4.0 163.0 0.0 . 236 . . Atlas-SNP ZC2HC1B 153918 hgsc.bcm.edu hg19 6 144207245 144207245 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZC2HC1B NM_001013623 exon3 c.A167G p.Q56R GATTACAGGGCAC . 111.0 5.0 154.0 0.0 . 6 . . Atlas-SNP IPCEF1 26034 hgsc.bcm.edu hg19 6 154480993 154480993 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IPCEF1 NM_001130699 exon13 c.T1287C p.P429P AGAAGAAGGTGAT . 57.0 5.0 79.0 0.0 . 45 . . Atlas-SNP NOX3 50508 hgsc.bcm.edu hg19 6 155750089 155750089 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b NOX3,NS,carcinoma,0,1 NOX3 NM_015718 exon9 c.A984G p.P328P TATGGCTGGGCAC . 79.0 4.0 114.0 0.0 . 93 . . Atlas-SNP IGF2R 3482 hgsc.bcm.edu hg19 6 160469467 160469467 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IGF2R NM_000876 exon18 c.A2406G p.E802E AGGGGAACATGTC . 62.0 4.0 124.0 0.0 . 251 . . Atlas-SNP THBS2 7058 hgsc.bcm.edu hg19 6 169626380 169626380 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b THBS2,NS,carcinoma,0,1 THBS2 NM_003247 exon17 c.A2433G p.E811E GTCTCGTTCATTG . 50.0 3.0 84.0 0.0 . 230 . . Atlas-SNP WDR27 253769 hgsc.bcm.edu hg19 6 170002368 170002368 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . WDR27 NM_182552 exon23 c.A2371G p.I791V AAGCGATTCCACA . 72.0 5.0 57.0 0.0 . 129 . . Atlas-SNP NUDT1 4521 hgsc.bcm.edu hg19 7 2284331 2284331 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NUDT1 NM_198949 exon3 c.A191G p.E64G TGCAAGAAGGAGA . 67.0 4.0 65.0 0.0 . 22 . . Atlas-SNP CARD11 84433 hgsc.bcm.edu hg19 7 2956991 2956991 + Nonsense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CARD11 NM_032415 exon20 c.C2636A p.S879X CTTGTTGAAAGCG . 57.0 4.0 60.0 0.0 . 339 . . Atlas-SNP AP5Z1 9907 hgsc.bcm.edu hg19 7 4825066 4825066 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_014855 exon8 c.T952C p.S318P GGGGACTCCGACC . 55.0 4.0 61.0 0.0 . . . . Atlas-SNP SNX13 23161 hgsc.bcm.edu hg19 7 17915106 17915106 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b SNX13,colon,carcinoma,0,1 SNX13 NM_015132 exon7 c.G661A p.E221K AACCTTCTTCATC . 54.0 3.0 74.0 1.0 . 113 . . Atlas-SNP DFNA5 1687 hgsc.bcm.edu hg19 7 24756897 24756897 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DFNA5 NM_001127453 exon5 c.T673C p.Y225H TCACGTATAACTC . 43.0 4.0 61.0 0.0 . 51 . . Atlas-SNP CRHR2 1395 hgsc.bcm.edu hg19 7 30704769 30704769 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CRHR2 NM_001202475 exon6 c.A541G p.N181D TGAGGTTCCAGTG . 97.0 4.0 117.0 0.0 . 104 . . Atlas-SNP AVL9 23080 hgsc.bcm.edu hg19 7 32612832 32612832 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AVL9 NM_015060 exon12 c.A1372G p.I458V ATCCAGATCCATG . 102.0 5.0 98.0 0.0 . 66 . . Atlas-SNP VPS41 27072 hgsc.bcm.edu hg19 7 38765881 38765881 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . VPS41 NM_014396 exon29 c.G2530A p.G844R CTGGTCCACGGTT . 93.0 4.0 110.0 0.0 . 102 . . Atlas-SNP C7orf25 79020 hgsc.bcm.edu hg19 7 42950513 42950513 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C7orf25 NM_001099858 exon2 c.A161G p.N54S GCATTATTCCTTT . 70.0 4.0 103.0 0.0 . 36 . . Atlas-SNP H2AFV 94239 hgsc.bcm.edu hg19 7 44875219 44875219 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . H2AFV NM_012412 exon4 c.A234G p.K78K CTTTACTTTGAGA . 82.0 6.0 132.0 0.0 . 14 . . Atlas-SNP CCM2 83605 hgsc.bcm.edu hg19 7 45077891 45077891 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCM2 NM_001029835 exon2 c.G133T p.G45C CTAAAAGGTGAAA . 71.0 4.0 93.0 0.0 . 42 . . Atlas-SNP COBL 23242 hgsc.bcm.edu hg19 7 51085259 51085259 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . COBL NM_015198 exon13 c.T3775C p.L1259L CGAGCAAGGGCAC . 98.0 4.0 125.0 0.0 . 167 . . Atlas-SNP COBL 23242 hgsc.bcm.edu hg19 7 51096495 51096495 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . COBL NM_015198 exon10 c.A2298G p.K766K TCTGACTTTCCCA . 86.0 5.0 150.0 0.0 . 167 . . Atlas-SNP ZNF716 441234 hgsc.bcm.edu hg19 7 57522850 57522850 + Missense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF716 NM_001159279 exon3 c.A238T p.N80Y AAGAGAAATGAGA . 34.0 9.0 41.0 0.0 . 207 . . Atlas-SNP ZNF716 441234 hgsc.bcm.edu hg19 7 57522851 57522851 + Missense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF716 NM_001159279 exon3 c.A239T p.N80I AGAGAAATGAGAT . 34.0 9.0 41.0 0.0 . 207 . . Atlas-SNP ZNF273 10793 hgsc.bcm.edu hg19 7 64389279 64389279 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF273 NM_021148 exon4 c.C1573T p.R525W TTTAACCGGTCCT . 127.0 6.0 113.0 0.0 . 45 . . Atlas-SNP ZNF92 168374 hgsc.bcm.edu hg19 7 64864692 64864692 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF92 NM_152626 exon4 c.T1665C p.H555H TACACATCAGATA . 82.0 4.0 106.0 0.0 . 68 . . Atlas-SNP HIP1 3092 hgsc.bcm.edu hg19 7 75184733 75184733 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b HIP1,NS,carcinoma,0,1 HIP1 NM_005338 exon19 c.C1950T p.C650C CCCAGCGCAGCTG . 100.0 4.0 146.0 0.0 . 91 . . Atlas-SNP CCDC146 57639 hgsc.bcm.edu hg19 7 76883831 76883831 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCDC146 NM_020879 exon5 c.A458G p.E153G TAAAGGAAGAAAA . 40.0 4.0 52.0 0.0 . 87 . . Atlas-SNP AKAP9 10142 hgsc.bcm.edu hg19 7 91706167 91706167 + Splice_Site SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AKAP9 NM_005751 exon29 c.6613-2A>G . TATTAAAGATTAC . 121.0 5.0 171.0 0.0 . 788 . . Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94057035 94057035 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . COL1A2 NM_000089 exon49 c.C3364A p.P1122T GACCAGCCTCGCT . 95.0 4.0 86.0 0.0 . 240 . . Atlas-SNP TRRAP 8295 hgsc.bcm.edu hg19 7 98609873 98609873 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TRRAP NM_001244580 exon72 c.C11475T p.L3825L CAACCTCGCCCAG . 63.0 12.0 81.0 0.0 . 863 . . Atlas-SNP STAG3 10734 hgsc.bcm.edu hg19 7 99800175 99800175 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . STAG3 NM_012447 exon25 c.A2662G p.M888V CTGGAGATGGATG . 57.0 4.0 88.0 0.0 . 121 . . Atlas-SNP CUX1 1523 hgsc.bcm.edu hg19 7 101839938 101839938 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CUX1 NM_001202543 exon15 c.A1280G p.D427G GGAAAGACCAGCC . 96.0 4.0 132.0 0.0 . 253 . . Atlas-SNP CFTR 1080 hgsc.bcm.edu hg19 7 117232660 117232660 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CFTR NM_000492 exon14 c.T2439C p.S813S GTTATCTCAAGAA . 61.0 4.0 83.0 0.0 . 171 . . Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121652375 121652375 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b PTPRZ1_ENST00000393386,NS,carcinoma,0,2 PTPRZ1 NM_002851 exon12 c.T3275C p.I1092T TTTCCATTTCTAG . 92.0 4.0 139.0 0.0 . 605 . . Atlas-SNP RNF148 378925 hgsc.bcm.edu hg19 7 122342235 122342235 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RNF148 NM_198085 exon1 c.C570T p.Y190Y CATGATGTAATGG . 84.0 4.0 97.0 0.0 . 71 . . Atlas-SNP CREB3L2 64764 hgsc.bcm.edu hg19 7 137567210 137567210 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CREB3L2 NM_194071 exon11 c.T1435C p.S479P CATTCGAGATAAT . 122.0 5.0 115.0 0.0 . 62 . . Atlas-SNP OR9A4 130075 hgsc.bcm.edu hg19 7 141619595 141619595 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OR9A4 NM_001001656 exon1 c.G920T p.R307L TGAAACGCTGCTG . 61.0 24.0 69.0 0.0 . 58 . . Atlas-SNP FAM131B 9715 hgsc.bcm.edu hg19 7 143054115 143054115 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FAM131B NM_001031690 exon7 c.A611G p.D204G AGGGCATCTGGAA . 74.0 4.0 74.0 0.0 . 104 . . Atlas-SNP ZNF777 27153 hgsc.bcm.edu hg19 7 149133833 149133833 + Missense_Mutation SNP C C T rs375051872 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF777 NM_015694 exon5 c.G1172A p.G391E ACCTGTCCCATCA . 90.0 5.0 94.0 0.0 . 63 . . Atlas-SNP ABCF2 10061 hgsc.bcm.edu hg19 7 150912710 150912710 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ABCF2 NM_005692 exon13 c.G1510T p.G504C TGAGACCGTATCG . 99.0 4.0 122.0 0.0 . 54 . . Atlas-SNP XKR6 286046 hgsc.bcm.edu hg19 8 10756400 10756400 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . XKR6 NM_173683 exon3 c.T988C p.S330P CCAGGGACATCAG . 43.0 6.0 111.0 0.0 . 85 . . Atlas-SNP XPO7 23039 hgsc.bcm.edu hg19 8 21848326 21848326 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . XPO7 NM_015024 exon18 c.A1937G p.E646G AGAGCGAGCACTT . 21.0 4.0 88.0 0.0 . 79 . . Atlas-SNP HR 55806 hgsc.bcm.edu hg19 8 21984816 21984816 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HR NM_018411 exon3 c.A1139G p.K380R GTCTTCTTCAGCT . 75.0 4.0 156.0 0.0 . 71 . . Atlas-SNP DOCK5 80005 hgsc.bcm.edu hg19 8 25191685 25191685 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DOCK5 NM_024940 exon21 c.A2165G p.K722R TTTACAAGCACTT . 100.0 4.0 373.0 0.0 . 167 . . Atlas-SNP PPP2R2A 5520 hgsc.bcm.edu hg19 8 26227714 26227714 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PPP2R2A NM_001177591 exon10 c.A1159G p.I387V CGAGACATAACCC . 108.0 5.0 200.0 0.0 . 44 . . Atlas-SNP ELP3 55140 hgsc.bcm.edu hg19 8 28016144 28016144 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ELP3 NM_018091 exon12 c.A1251G p.P417P ACGGCCATACCAG . 44.0 4.0 147.0 0.0 . 36 . . Atlas-SNP HMBOX1 79618 hgsc.bcm.edu hg19 8 28904937 28904937 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b HMBOX1,NS,carcinoma,0,1 HMBOX1 NM_024567 exon9 c.A997G p.R333G GCTAACAGAAGGA . 69.0 3.0 142.0 0.0 . 34 . . Atlas-SNP MBOAT4 619373 hgsc.bcm.edu hg19 8 29989847 29989847 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MBOAT4 NM_001100916 exon3 c.A920G p.N307S CTTTGGTTCCACT . 100.0 4.0 263.0 0.0 . 31 . . Atlas-SNP KAT6A 7994 hgsc.bcm.edu hg19 8 41791422 41791422 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_001099412 exon18 c.A4316G p.H1439R CCCTCATGCTCAC . 61.0 5.0 109.0 0.0 . . . . Atlas-SNP KAT6A 7994 hgsc.bcm.edu hg19 8 41794799 41794799 + Missense_Mutation SNP T T A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_001099412 exon17 c.A3327T p.E1109D TTCATCTTCTTCT . 31.0 4.0 100.0 0.0 . . . . Atlas-SNP KCNB2 9312 hgsc.bcm.edu hg19 8 73480279 73480279 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b KCNB2,NS,carcinoma,0,1 KCNB2 NM_004770 exon2 c.C310T p.R104W TTCTACCGGACCG . 302.0 21.0 178.0 1.0 . 228 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77616406 77616406 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZFHX4 NM_024721 exon2 c.A83G p.D28G AACTTGATAATGA . 281.0 27.0 182.0 0.0 . 878 . . Atlas-SNP STMN2 11075 hgsc.bcm.edu hg19 8 80553709 80553709 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . STMN2 NM_007029 exon3 c.T212C p.L71S GAACTTTAGCTTC . 246.0 35.0 122.0 0.0 . 23 . . Atlas-SNP REXO1L1 254958 hgsc.bcm.edu hg19 8 86573858 86573858 + Silent SNP G G A rs145542023 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b REXO1L1_ENST00000379010,NS,carcinoma,0,2 REXO1L1 NM_172239 exon1 c.C1869T p.A623A GTAGTCGGCCGCG . 35.0 2.0 13.0 1.0 . 28 . . Atlas-SNP SLC7A13 157724 hgsc.bcm.edu hg19 8 87226642 87226642 + Silent SNP C C T rs202114931 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b SLC7A13,NS,carcinoma,0,2 SLC7A13 NM_138817 exon4 c.G1413A p.X471X CGACATCTATTCC . 16.0 5.0 8.0 0.0 . 97 . . Atlas-SNP CNBD1 168975 hgsc.bcm.edu hg19 8 88218281 88218281 + Silent SNP A A C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CNBD1 NM_173538 exon5 c.A492C p.P164P AATTCCAGATTTA . 113.0 5.0 63.0 0.0 . 206 . . Atlas-SNP RECQL4 9401 hgsc.bcm.edu hg19 8 145737638 145737638 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RECQL4 NM_004260 exon19 c.A3125G p.D1042G GTCAAGTCCCCCG . 115.0 6.0 57.0 0.0 . 75 . . Atlas-SNP LRRC24 441381 hgsc.bcm.edu hg19 8 145748134 145748134 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRRC24 NM_001024678 exon5 c.G1267A p.A423T TCATGGCGACCAG . 34.0 7.0 16.0 0.0 . 11 . . Atlas-SNP UHRF2 115426 hgsc.bcm.edu hg19 9 6481676 6481676 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . UHRF2 NM_152896 exon7 c.A1194G p.E398E CAGTGAAGTTGTA . 95.0 4.0 120.0 0.0 . 50 . . Atlas-SNP UHRF2 115426 hgsc.bcm.edu hg19 9 6493855 6493855 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . UHRF2 NM_152896 exon10 c.A1527G p.G509G CACTGGAAGCGGT . 74.0 4.0 120.0 0.0 . 50 . . Atlas-SNP MPDZ 8777 hgsc.bcm.edu hg19 9 13188853 13188853 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MPDZ NM_003829 exon17 c.A2294G p.E765G GCTTCCTCAAGAC . 97.0 4.0 141.0 0.0 . 324 . . Atlas-SNP DENND4C 55667 hgsc.bcm.edu hg19 9 19350716 19350716 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DENND4C NM_017925 exon23 c.A4187G p.D1396G ATAGAGACTACAG . 70.0 5.0 94.0 0.0 . 120 . . Atlas-SNP TEK 7010 hgsc.bcm.edu hg19 9 27213566 27213566 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TEK NM_000459 exon18 c.G2962A p.G988S TCCCGAGGTCAAG . 72.0 4.0 92.0 0.0 . 250 . . Atlas-SNP C9orf72 203228 hgsc.bcm.edu hg19 9 27556627 27556627 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C9orf72 NM_018325 exon8 c.A1023G p.R341R AGTGGCTCTCCAG . 119.0 5.0 208.0 0.0 . 48 . . Atlas-SNP GALT 2592 hgsc.bcm.edu hg19 9 34649497 34649497 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GALT NM_000155 exon10 c.T995C p.V332A CCACTGTCCGGAA . 92.0 4.0 117.0 0.0 . 29 . . Atlas-SNP IL11RA 3590 hgsc.bcm.edu hg19 9 34656848 34656848 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IL11RA NM_001142784 exon4 c.T274C p.Y92H GGCACCTACATCT . 75.0 4.0 131.0 0.0 . 34 . . Atlas-SNP UNC13B 10497 hgsc.bcm.edu hg19 9 35389938 35389938 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . UNC13B NM_006377 exon24 c.A2943G p.E981E AGAGGAAGATAAG . 109.0 5.0 167.0 0.0 . 153 . . Atlas-SNP GNE 10020 hgsc.bcm.edu hg19 9 36222836 36222836 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GNE NM_001128227 exon9 c.C1664T p.A555V CTTTCCGCCAGGG . 96.0 4.0 159.0 0.0 . 141 . . Atlas-SNP FBXO10 26267 hgsc.bcm.edu hg19 9 37525156 37525156 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FBXO10 NM_012166 exon6 c.T1720C p.F574L CCTTGAAGATGTG . 78.0 4.0 88.0 0.0 . 75 . . Atlas-SNP TJP2 9414 hgsc.bcm.edu hg19 9 71845029 71845029 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TJP2 NM_001170416 exon11 c.G1645A p.G549R AAGAAGGGAGACA . 80.0 4.0 123.0 0.0 . 120 . . Atlas-SNP PTAR1 375743 hgsc.bcm.edu hg19 9 72356709 72356709 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PTAR1 NM_001099666 exon3 c.A322G p.R108G CATACCTCACGTT . 99.0 4.0 133.0 0.0 . 46 . . Atlas-SNP C9orf57 138240 hgsc.bcm.edu hg19 9 74674293 74674293 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C9orf57 NM_001128618 exon2 c.T21C p.S7S CGTCCCACTGATT . 86.0 4.0 108.0 0.0 . 16 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79461504 79461504 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PRUNE2 NM_015225 exon4 c.T435C p.S145S GAGAGAAGAGGAA . 80.0 5.0 114.0 0.0 . 331 . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79960046 79960046 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . VPS13A NM_001018038 exon52 c.A7277G p.Q2426R TTGTTCAATACAA . 88.0 4.0 104.0 0.0 . 735 . . Atlas-SNP GKAP1 80318 hgsc.bcm.edu hg19 9 86395306 86395306 + Missense_Mutation SNP T T A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GKAP1 NM_025211 exon7 c.A576T p.K192N AGTCTTTTTACTA . 243.0 17.0 280.0 0.0 . 27 . . Atlas-SNP FAM22F 54754 hgsc.bcm.edu hg19 9 97080944 97080944 + Missense_Mutation SNP G G C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FAM22F NM_017561 exon7 c.C2074G p.P692A TGGCAGGAGAAGG . 312.0 21.0 390.0 0.0 . 72 . . Atlas-SNP ZNF782 158431 hgsc.bcm.edu hg19 9 99580298 99580298 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF782 NM_001001662 exon6 c.A2007G p.T669T CTCCCCTGTGTGA . 175.0 8.0 246.0 0.0 . 64 . . Atlas-SNP CCDC180 0 hgsc.bcm.edu hg19 9 100074426 100074426 + Silent SNP C C A rs377165805 alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_020893 exon4 c.C424A p.R142R AAAGCCCGAGAGA . 73.0 4.0 95.0 0.0 . . . . Atlas-SNP IKBKAP 8518 hgsc.bcm.edu hg19 9 111656321 111656321 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IKBKAP NM_003640 exon26 c.T2762C p.L921P GTATTAAGAAATG . 69.0 4.0 118.0 0.0 . 122 . . Atlas-SNP SVEP1 79987 hgsc.bcm.edu hg19 9 113169046 113169046 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SVEP1 NM_153366 exon38 c.A8834G p.K2945R ACTGGTTTACAGA . 97.0 4.0 118.0 0.0 . 326 . . Atlas-SNP SLC31A1 1317 hgsc.bcm.edu hg19 9 116018546 116018546 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLC31A1 NM_001859 exon2 c.A118G p.M40V AGCAGCATGATGA . 166.0 7.0 203.0 0.0 . 12 . . Atlas-SNP WDR31 114987 hgsc.bcm.edu hg19 9 116079110 116079110 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . WDR31 NM_001012361 exon11 c.T1023C p.C341C ACTTGCACACAAT . 56.0 4.0 90.0 0.0 . 23 . . Atlas-SNP TNC 3371 hgsc.bcm.edu hg19 9 117852928 117852928 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b TNC,NS,carcinoma,0,1 TNC NM_002160 exon2 c.A370G p.S124G GTCTGCTCAGCAG . 94.0 4.0 95.0 1.0 . 282 . . Atlas-SNP CDK5RAP2 55755 hgsc.bcm.edu hg19 9 123156882 123156882 + Missense_Mutation SNP T T A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CDK5RAP2 NM_018249 exon36 c.A5486T p.H1829L TTTTTATGTAGTT . 252.0 35.0 319.0 0.0 . 157 . . Atlas-SNP RC3H2 54542 hgsc.bcm.edu hg19 9 125642094 125642094 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RC3H2 NM_018835 exon8 c.A1152G p.V384V ATGAACTACTGTT . 68.0 5.0 78.0 0.0 . 150 . . Atlas-SNP ODF2 4957 hgsc.bcm.edu hg19 9 131231625 131231625 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ODF2 NM_153435 exon5 c.A605G p.K202R GTCTGAAGTCTGA . 63.0 4.0 89.0 0.0 . 227 . . Atlas-SNP PHYHD1 254295 hgsc.bcm.edu hg19 9 131689459 131689459 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PHYHD1 NM_001100877 exon2 c.A176G p.E59G AAGAGGAGCAGCT . 70.0 4.0 102.0 0.0 . 29 . . Atlas-SNP PTGES 9536 hgsc.bcm.edu hg19 9 132502117 132502117 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PTGES NM_004878 exon3 c.A232G p.T78A AGATGGTCTCCAT . 90.0 4.0 118.0 0.0 . 7 . . Atlas-SNP TOR1B 27348 hgsc.bcm.edu hg19 9 132571282 132571282 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TOR1B NM_014506 exon4 c.T740C p.L247P CTGTACTGTCTGT . 78.0 4.0 95.0 0.0 . 20 . . Atlas-SNP TSC1 7248 hgsc.bcm.edu hg19 9 135771990 135771990 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b TSC1,colon,carcinoma,0,2 TSC1 NM_000368 exon23 c.A3127G p.S1043G GCTCGCTGCTGCT . 34.0 3.0 55.0 1.0 . 167 . . Atlas-SNP GLT6D1 360203 hgsc.bcm.edu hg19 9 138516329 138516329 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GLT6D1 NM_182974 exon5 c.G445A p.V149M CATGCACCAGGGG . 47.0 4.0 80.0 0.0 . 56 . . Atlas-SNP LCN8 138307 hgsc.bcm.edu hg19 9 139651509 139651509 + Missense_Mutation SNP C C T rs140571672 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LCN8 NM_178469 exon2 c.G136A p.V46M CCTTCACGGTCAG . 76.0 4.0 90.0 0.0 . 14 . C|1.000;T|0.000 Atlas-SNP FBXW5 54461 hgsc.bcm.edu hg19 9 139837940 139837940 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FBXW5 NM_018998 exon3 c.A212G p.E71G AACTCCTCGTACC . 62.0 4.0 71.0 0.0 . 36 . . Atlas-SNP PITRM1 10531 hgsc.bcm.edu hg19 10 3208567 3208567 + Missense_Mutation SNP T T G rs28416720 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b PITRM1,colon,carcinoma,0,3 PITRM1 NM_014889 exon4 c.A272C p.Q91P CGGAACTGCACGC . 25.0 6.0 38.0 0.0 . 109 . . Atlas-SNP SFMBT2 57713 hgsc.bcm.edu hg19 10 7247842 7247842 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SFMBT2 NM_001029880 exon12 c.A1379G p.D460G AAGATGTCCATGG . 95.0 5.0 144.0 0.0 . 209 . . Atlas-SNP MLLT10 8028 hgsc.bcm.edu hg19 10 22030912 22030912 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MLLT10 NM_001195626 exon22 c.A3207G p.X1069W AAGTTGACACCTG . 104.0 6.0 166.0 0.0 . 183 . . Atlas-SNP ZEB1 6935 hgsc.bcm.edu hg19 10 31815839 31815839 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZEB1 NM_001174096 exon9 c.A3025G p.N1009D CTCTCGAATGAGC . 66.0 4.0 77.0 0.0 . 173 . . Atlas-SNP NRP1 8829 hgsc.bcm.edu hg19 10 33552610 33552610 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NRP1 NM_001244973 exon4 c.T622C p.Y208H GGTCGTAGCGACA . 84.0 4.0 89.0 0.0 . 126 . . Atlas-SNP ZNF33B 7582 hgsc.bcm.edu hg19 10 43089012 43089012 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF33B NM_006955 exon5 c.T1386C p.T462T TGTGTGAGTTCTC . 98.0 4.0 164.0 0.0 . 78 . . Atlas-SNP ALOX5 240 hgsc.bcm.edu hg19 10 45939627 45939627 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ALOX5 NM_000698 exon13 c.A1738G p.K580E ACTGCCAAGGGCG . 74.0 4.0 109.0 0.0 . 88 . . Atlas-SNP FRMPD2 143162 hgsc.bcm.edu hg19 10 49457197 49457197 + Missense_Mutation SNP G G A rs142764597 alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FRMPD2 NM_001018071 exon3 c.C176T p.P59L GACCAGGGGCAAA . 83.0 4.0 89.0 0.0 . 157 . G|1.000;T|0.000 Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 49943958 49943958 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . WDFY4 NM_020945 exon11 c.T1721C p.I574T CCTTCATCAAGAT . 60.0 4.0 67.0 0.0 . 205 . . Atlas-SNP VSTM4 196740 hgsc.bcm.edu hg19 10 50256529 50256529 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . VSTM4 NM_001031746 exon6 c.G769A p.A257T CTTTGGCAGGGAC . 51.0 4.0 87.0 0.0 . 83 . . Atlas-SNP ERCC6 2074 hgsc.bcm.edu hg19 10 50701191 50701191 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ERCC6 NM_000124 exon8 c.C1793G p.T598R GTTTCATGTAGAA . 98.0 4.0 138.0 0.0 . 162 . . Atlas-SNP ERCC6 2074 hgsc.bcm.edu hg19 10 50701217 50701217 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ERCC6 NM_000124 exon8 c.C1767A p.F589L CGGAGGCCACCAC . 109.0 5.0 150.0 0.0 . 162 . . Atlas-SNP CHAT 1103 hgsc.bcm.edu hg19 10 50830196 50830196 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CHAT NM_020549 exon5 c.G752T p.S251I TGGACAGGTAGGA . 100.0 4.0 147.0 0.0 . 162 . . Atlas-SNP CISD1 55847 hgsc.bcm.edu hg19 10 60047332 60047332 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CISD1 NM_018464 exon3 c.T249C p.C83C ATTCTGTGATGGG . 99.0 4.0 134.0 0.0 . 7 . . Atlas-SNP SUPV3L1 6832 hgsc.bcm.edu hg19 10 70968547 70968547 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SUPV3L1 NM_003171 exon15 c.A2117G p.Q706R AGAGCCAAGCTAG . 86.0 4.0 155.0 0.0 . 61 . . Atlas-SNP PRF1 5551 hgsc.bcm.edu hg19 10 72357981 72357981 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PRF1 NM_001083116 exon3 c.A1496G p.Q499R GGAGCCTGATCAC . 88.0 4.0 103.0 0.0 . 64 . . Atlas-SNP MICU1 10367 hgsc.bcm.edu hg19 10 74267928 74267928 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_001195518 exon6 c.A637G p.T213A CAGTTGTGAGGAA . 97.0 4.0 100.0 0.0 . . . . Atlas-SNP FUT11 170384 hgsc.bcm.edu hg19 10 75532420 75532420 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FUT11 NM_173540 exon1 c.G329A p.R110Q ACCGCCGAGCGCT . 20.0 4.0 15.0 0.0 . 30 . . Atlas-SNP KAT6B 23522 hgsc.bcm.edu hg19 10 76788662 76788662 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_012330 exon18 c.A4080G p.E1360E GGAGGAAGAGGAA . 39.0 5.0 37.0 0.0 . . . . Atlas-SNP RPS24 6229 hgsc.bcm.edu hg19 10 79795311 79795311 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RPS24 NM_001142283 exon3 c.A112G p.T38A CCTAAGACAGAAA . 70.0 4.0 71.0 0.0 . 23 . . Atlas-SNP MAT1A 4143 hgsc.bcm.edu hg19 10 82049166 82049166 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MAT1A NM_000429 exon1 c.T14C p.V5A CCATCCACCGGTC . 85.0 6.0 179.0 0.0 . 52 . . Atlas-SNP LRIT1 26103 hgsc.bcm.edu hg19 10 86001096 86001096 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRIT1 NM_015613 exon1 c.A100G p.M34V CACCCATGATATG . 84.0 4.0 89.0 0.0 . 73 . . Atlas-SNP WAPAL 23063 hgsc.bcm.edu hg19 10 88259819 88259819 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . WAPAL NM_015045 exon3 c.A1181G p.E394G CCAGCTTCTCCCA . 113.0 5.0 163.0 0.0 . 81 . . Atlas-SNP IFIT2 3433 hgsc.bcm.edu hg19 10 91066406 91066406 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IFIT2 NM_001547 exon2 c.A693G p.E231E AGGTGAAGGAGAG . 72.0 4.0 92.0 0.0 . 39 . . Atlas-SNP IFIT1B 439996 hgsc.bcm.edu hg19 10 91144106 91144106 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IFIT1B NM_001010987 exon2 c.C1036T p.L346L GTTGACCTGGCTG . 61.0 4.0 60.0 0.0 . 39 . . Atlas-SNP TCTN3 26123 hgsc.bcm.edu hg19 10 97453399 97453399 + Splice_Site SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TCTN3 NM_015631 exon2 c.256+2T>C . TCCCTCACCTGGG . 53.0 4.0 72.0 0.0 . 66 . . Atlas-SNP C10orf12 26148 hgsc.bcm.edu hg19 10 98743214 98743214 + Silent SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C10orf12 NM_015652 exon1 c.C2067A p.T689T AAACACCCAGCAG . 57.0 4.0 84.0 0.0 . 94 . . Atlas-SNP ANKRD2 26287 hgsc.bcm.edu hg19 10 99342105 99342105 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ANKRD2 NM_020349 exon7 c.A769G p.T257A GTCCGGACAGGGC . 65.0 5.0 113.0 0.0 . 27 . . Atlas-SNP R3HCC1L 27291 hgsc.bcm.edu hg19 10 100003864 100003864 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . R3HCC1L NM_001256619 exon11 c.A2328G p.E776E GTTGGAAGCCAAG . 87.0 4.0 112.0 0.0 . 3 . . Atlas-SNP CNNM1 26507 hgsc.bcm.edu hg19 10 101136951 101136951 + Silent SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CNNM1 NM_020348 exon7 c.C2316A p.I772I CCACATCCTCAGC . 100.0 4.0 154.0 0.0 . 101 . . Atlas-SNP HPS6 79803 hgsc.bcm.edu hg19 10 103827332 103827332 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HPS6 NM_024747 exon1 c.C2101T p.P701S CTGGCTCCAGCTG . 56.0 4.0 55.0 0.0 . 38 . . Atlas-SNP NFKB2 4791 hgsc.bcm.edu hg19 10 104160556 104160556 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NFKB2 NM_001077494 exon17 c.G1943A p.G648E AGCTGGGGTTGGT . 100.0 4.0 115.0 0.0 . 48 . . Atlas-SNP PSD 5662 hgsc.bcm.edu hg19 10 104164802 104164802 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b PSD_ENST00000020673,NS,carcinoma,0,2 PSD NM_001270965 exon15 c.A2408G p.K803R CCAGGCTTGTACT . 125.0 6.0 162.0 1.0 . 164 . . Atlas-SNP TRIM8 81603 hgsc.bcm.edu hg19 10 104414949 104414949 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TRIM8 NM_030912 exon3 c.A779G p.K260R AGGCCAAGTTCTG . 96.0 4.0 124.0 0.0 . 35 . . Atlas-SNP CALHM3 119395 hgsc.bcm.edu hg19 10 105233172 105233172 + Missense_Mutation SNP T T G rs199875922 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b CALHM3_ENST00000369783,caecum,carcinoma,0,2 CALHM3 NM_001129742 exon3 c.A833C p.E278A AGGCCTTCTGGGG . 25.0 3.0 34.0 0.0 . 46 . . Atlas-SNP CALHM3 119395 hgsc.bcm.edu hg19 10 105233174 105233174 + Silent SNP T T G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b .,4 CALHM3 NM_001129742 exon3 c.A831C p.P277P GCCTTCTGGGGGC . 24.0 3.0 32.0 0.0 . 46 . . Atlas-SNP SLK 9748 hgsc.bcm.edu hg19 10 105750545 105750545 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLK NM_014720 exon2 c.A263G p.H88R GTGATCACCCAAA . 127.0 37.0 114.0 0.0 . 107 . . Atlas-SNP SMNDC1 10285 hgsc.bcm.edu hg19 10 112054041 112054041 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SMNDC1 NM_005871 exon6 c.A584G p.K195R CTCCTCTTTACCT . 95.0 4.0 115.0 0.0 . 9 . . Atlas-SNP ATRNL1 26033 hgsc.bcm.edu hg19 10 116931101 116931101 + Silent SNP C C T rs113157696 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ATRNL1 NM_001276282 exon8 c.C1399T p.L467L TTTTCTCTAATAA . 128.0 9.0 171.0 0.0 . 219 . C|0.500;T|0.500 Atlas-SNP TACC2 10579 hgsc.bcm.edu hg19 10 123842981 123842981 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TACC2 NM_206862 exon4 c.A966G p.E322E CCCAGAAGCAGAA . 61.0 5.0 64.0 0.0 . 271 . . Atlas-SNP LRRC56 115399 hgsc.bcm.edu hg19 11 552650 552650 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRRC56 NM_198075 exon13 c.A1263G p.Q421Q AGAGCAAGTGCAC . 124.0 5.0 116.0 0.0 . 23 . . Atlas-SNP PNPLA2 57104 hgsc.bcm.edu hg19 11 821745 821745 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PNPLA2 NM_020376 exon3 c.T305C p.L102P AGGTCCTGCCTGC . 99.0 4.0 102.0 0.0 . 26 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1025876 1025876 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MUC6 NM_005961 exon22 c.A2728G p.I910V TCAGGATCTTGAA . 81.0 4.0 113.0 0.0 . 408 . . Atlas-SNP C11orf40 143501 hgsc.bcm.edu hg19 11 4592711 4592711 + Missense_Mutation SNP T T A rs78543312 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C11orf40 NM_144663 exon4 c.A596T p.N199I ATACAGTTTTTCC . 203.0 17.0 236.0 0.0 . 37 . . Atlas-SNP C11orf40 143501 hgsc.bcm.edu hg19 11 4592712 4592712 + Missense_Mutation SNP T T G rs78387367 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C11orf40 NM_144663 exon4 c.A595C p.N199H TACAGTTTTTCCC . 198.0 12.0 234.0 0.0 . 37 . . Atlas-SNP OR51B4 79339 hgsc.bcm.edu hg19 11 5322255 5322255 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OR51B4 NM_033179 exon1 c.A922G p.S308G CCCTACTCTGCCC . 72.0 4.0 84.0 0.0 . 64 . . Atlas-SNP TRIM3 10612 hgsc.bcm.edu hg19 11 6471835 6471835 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TRIM3 NM_001248006 exon10 c.T1887C p.A629A GTTCACAGCCACA . 101.0 5.0 84.0 0.0 . 67 . . Atlas-SNP DNHD1 144132 hgsc.bcm.edu hg19 11 6567219 6567219 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DNHD1 NM_144666 exon21 c.A5050G p.T1684A TGTGGGACCGTAC . 118.0 5.0 145.0 0.0 . 198 . . Atlas-SNP ZNF215 7762 hgsc.bcm.edu hg19 11 6977409 6977409 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF215 NM_013250 exon7 c.C1201T p.H401Y ATCATTCACACAG . 76.0 4.0 68.0 0.0 . 72 . . Atlas-SNP RPL27A 6157 hgsc.bcm.edu hg19 11 8704765 8704765 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RPL27A NM_000990 exon2 c.A20G p.K7R TGAGGAAGACCCG . 78.0 4.0 101.0 0.0 . 5 . . Atlas-SNP NUCB2 4925 hgsc.bcm.edu hg19 11 17352477 17352477 + Nonsense_Mutation SNP T T A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NUCB2 NM_005013 exon13 c.T1202A p.L401X AAAAATTACAACA . 304.0 17.0 300.0 0.0 . 31 . . Atlas-SNP NUCB2 4925 hgsc.bcm.edu hg19 11 17352479 17352479 + Nonsense_Mutation SNP C C T rs189362726 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NUCB2 NM_005013 exon13 c.C1204T p.Q402X AAATTACAACAAG . 43.0 18.0 9.0 0.0 . 31 . . Atlas-SNP NUCB2 4925 hgsc.bcm.edu hg19 11 17352480 17352480 + Missense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NUCB2 NM_005013 exon13 c.A1205T p.Q402L AATTACAACAAGG . 43.0 20.0 6.0 0.0 . 31 . . Atlas-SNP FIBIN 387758 hgsc.bcm.edu hg19 11 27016470 27016470 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FIBIN NM_203371 exon1 c.T397C p.S133P TCCAACTCGGACA . 51.0 5.0 43.0 0.0 . 19 . . Atlas-SNP DCDC5 100506627 hgsc.bcm.edu hg19 11 30900222 30900222 + Missense_Mutation SNP G G C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DCDC5 NM_020869 exon19 c.C2582G p.A861G ATTCTGGCATAAT . 95.0 39.0 90.0 0.0 . 137 . . Atlas-SNP QSER1 79832 hgsc.bcm.edu hg19 11 32955843 32955843 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . QSER1 NM_001076786 exon4 c.T2652C p.G884G AGATGGTGATTCT . 112.0 5.0 189.0 0.0 . 153 . . Atlas-SNP CD44 960 hgsc.bcm.edu hg19 11 35222635 35222635 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CD44 NM_000610 exon8 c.C929T p.T310I TTTCAACCACACC . 67.0 4.0 62.0 0.0 . 48 . . Atlas-SNP AMBRA1 55626 hgsc.bcm.edu hg19 11 46456589 46456589 + Splice_Site SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AMBRA1 NM_017749 exon15 c.2363-2A>G . GGAAGCTGCATCA . 96.0 4.0 78.0 0.0 . 201 . . Atlas-SNP OR4B1 119765 hgsc.bcm.edu hg19 11 48239231 48239231 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OR4B1 NM_001005470 exon1 c.A870G p.A290A GAATGCAGAGGTG . 74.0 4.0 61.0 0.0 . 52 . . Atlas-SNP OR5M1 390168 hgsc.bcm.edu hg19 11 56380553 56380553 + Silent SNP G G C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OR5M1 NM_001004740 exon1 c.C426G p.V142V CAGACAGACACAG . 168.0 9.0 197.0 0.0 . 92 . . Atlas-SNP SERPING1 710 hgsc.bcm.edu hg19 11 57374013 57374013 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SERPING1 NM_001032295 exon5 c.A1022G p.K341R CTTTGAAAGCCAA . 65.0 4.0 82.0 0.0 . 57 . . Atlas-SNP OR5B21 219968 hgsc.bcm.edu hg19 11 58275280 58275280 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OR5B21 NM_001005218 exon1 c.T299C p.F100S AAGAAGAAGAACT . 94.0 4.0 123.0 0.0 . 59 . . Atlas-SNP MS4A6A 64231 hgsc.bcm.edu hg19 11 59947428 59947428 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MS4A6A NM_001247999 exon4 c.T242C p.I81T CACAAGATCTGGA . 145.0 6.0 153.0 0.0 . 85 . . Atlas-SNP MS4A14 84689 hgsc.bcm.edu hg19 11 60165354 60165354 + Silent SNP T T A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MS4A14 NM_001261828 exon2 c.T168A p.I56I AATCATTGTGGGC . 22.0 14.0 1.0 0.0 . 120 . . Atlas-SNP VPS37C 55048 hgsc.bcm.edu hg19 11 60900811 60900811 + Splice_Site SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . VPS37C NM_017966 exon5 c.266-2A>G . TTTCTCTGGAAGG . 61.0 4.0 69.0 0.0 . 30 . . Atlas-SNP DDB1 1642 hgsc.bcm.edu hg19 11 61097525 61097525 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DDB1 NM_001923 exon3 c.T232C p.F78L AGATAAACAGCAG . 142.0 6.0 141.0 0.0 . 100 . . Atlas-SNP SCGB1A1 7356 hgsc.bcm.edu hg19 11 62189867 62189867 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SCGB1A1 NM_003357 exon2 c.T230C p.I77T AAAGCATCATTAA . 71.0 4.0 97.0 0.0 . 5 . . Atlas-SNP INTS5 80789 hgsc.bcm.edu hg19 11 62416122 62416122 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . INTS5 NM_030628 exon2 c.T1430C p.L477P TTTTTGAGCGCAT . 69.0 4.0 66.0 0.0 . 81 . . Atlas-SNP ATL3 25923 hgsc.bcm.edu hg19 11 63396832 63396832 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ATL3 NM_015459 exon13 c.G1585T p.A529S CAACTGCATCCCT . 249.0 102.0 277.0 0.0 . 31 . . Atlas-SNP KCNK4 50801 hgsc.bcm.edu hg19 11 64060629 64060629 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KCNK4 NM_033310 exon2 c.C139A p.L47M AAGTTCCTGAGGG . 68.0 4.0 74.0 0.0 . 22 . . Atlas-SNP MEN1 4221 hgsc.bcm.edu hg19 11 64577196 64577196 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MEN1 NM_130800 exon2 c.T386C p.L129P CGGCTGAGGCTGT . 118.0 8.0 106.0 0.0 . 442 . . Atlas-SNP EHBP1L1 254102 hgsc.bcm.edu hg19 11 65351097 65351097 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EHBP1L1 NM_001099409 exon9 c.A2954G p.E985G GAAATGAGAAGGG . 83.0 4.0 80.0 0.0 . 64 . . Atlas-SNP OVOL1 5017 hgsc.bcm.edu hg19 11 65562182 65562182 + Silent SNP C C T rs377708693 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b OVOL1,NS,carcinoma,0,1 OVOL1 NM_004561 exon3 c.C492T p.H164H GAGACACGTCCGA . 58.0 3.0 70.0 0.0 . 15 . . Atlas-SNP DPP3 10072 hgsc.bcm.edu hg19 11 66249887 66249887 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DPP3 NM_001256670 exon2 c.C216T p.P72P GGACCCCGACCAG . 34.0 4.0 30.0 0.0 . 61 . . Atlas-SNP PC 5091 hgsc.bcm.edu hg19 11 66636393 66636393 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PC NM_000920 exon9 c.A946G p.R316G CGTGCCTGTCCAC . 148.0 7.0 181.0 0.0 . 116 . . Atlas-SNP KDM2A 22992 hgsc.bcm.edu hg19 11 67020287 67020287 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KDM2A NM_012308 exon18 c.T2891C p.I964T CCAACATCTCTAA . 73.0 4.0 86.0 0.0 . 80 . . Atlas-SNP P2RY2 5029 hgsc.bcm.edu hg19 11 72945625 72945625 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . P2RY2 NM_176071 exon3 c.T421C p.S141P CTGCGCTCCCTGC . 74.0 4.0 41.0 0.0 . 54 . . Atlas-SNP C2CD3 26005 hgsc.bcm.edu hg19 11 73824846 73824846 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C2CD3 NM_015531 exon11 c.T1822C p.S608P TACTGGAGGCGAG . 76.0 5.0 90.0 0.0 . 288 . . Atlas-SNP DLG2 1740 hgsc.bcm.edu hg19 11 83173062 83173062 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DLG2 NM_001142699 exon27 c.T2804C p.F935S TCTCCAAATTCTT . 496.0 53.0 552.0 0.0 . 448 . . Atlas-SNP KIAA1731 85459 hgsc.bcm.edu hg19 11 93432054 93432054 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA1731 NM_033395 exon15 c.A3976G p.S1326G TTTTCAAGCCACC . 100.0 4.0 148.0 0.0 . 173 . . Atlas-SNP MED17 9440 hgsc.bcm.edu hg19 11 93528080 93528080 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MED17 NM_004268 exon6 c.C866T p.P289L GTTCCCCACATTG . 84.0 4.0 99.0 0.0 . 37 . . Atlas-SNP HEPHL1 341208 hgsc.bcm.edu hg19 11 93844145 93844145 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HEPHL1 NM_001098672 exon18 c.A3122G p.H1041R CAGATCACCCAGG . 125.0 5.0 134.0 0.0 . 144 . . Atlas-SNP HEPHL1 341208 hgsc.bcm.edu hg19 11 93845031 93845031 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HEPHL1 NM_001098672 exon20 c.T3451C p.S1151P GTCCAGTCCTGTG . 94.0 4.0 138.0 0.0 . 144 . . Atlas-SNP EXPH5 23086 hgsc.bcm.edu hg19 11 108398908 108398908 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EXPH5 NM_015065 exon4 c.T447C p.C149C GCCATCACATCTG . 66.0 4.0 84.0 0.0 . 193 . . Atlas-SNP EXPH5 23086 hgsc.bcm.edu hg19 11 108464205 108464205 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EXPH5 NM_015065 exon1 c.A59G p.K20R AGGATCTTCCTGG . 199.0 8.0 202.0 0.0 . 193 . . Atlas-SNP PAFAH1B2 5049 hgsc.bcm.edu hg19 11 117031926 117031926 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PAFAH1B2 NM_001184747 exon4 c.A237G p.R79R AACAAGACATGTT . 107.0 5.0 116.0 0.0 . 19 . . Atlas-SNP CEP164 22897 hgsc.bcm.edu hg19 11 117222658 117222658 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b CEP164,caecum,carcinoma,0,1 CEP164 NM_001271933 exon4 c.A347G p.K116R AAAAAAAGGAAAA . 73.0 3.0 76.0 1.0 . 121 . . Atlas-SNP HINFP 25988 hgsc.bcm.edu hg19 11 119004976 119004976 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HINFP NM_015517 exon11 c.A1322G p.E441G AGGAAGAGGAAGA . 90.0 4.0 118.0 0.0 . 50 . . Atlas-SNP TRIM29 23650 hgsc.bcm.edu hg19 11 120007994 120007994 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TRIM29 NM_012101 exon1 c.T746C p.F249S TCCTGGAACATGC . 94.0 5.0 96.0 0.0 . 78 . . Atlas-SNP OAF 220323 hgsc.bcm.edu hg19 11 120096467 120096467 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OAF NM_178507 exon2 c.A329G p.E110G ACAATGAGATCAT . 70.0 4.0 62.0 0.0 . 12 . . Atlas-SNP OR8B4 283162 hgsc.bcm.edu hg19 11 124294157 124294157 + Missense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OR8B4 NM_001005196 exon1 c.T611A p.V204E GTGATTACTCCAA . 112.0 6.0 126.0 0.0 . 60 . . Atlas-SNP ROBO4 54538 hgsc.bcm.edu hg19 11 124764172 124764172 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b ROBO4,colon,carcinoma,0,1 ROBO4 NM_019055 exon8 c.T1243C p.S415P AGTAGGAGCCTGG . 109.0 5.0 132.0 0.0 . 130 . . Atlas-SNP NFRKB 4798 hgsc.bcm.edu hg19 11 129752348 129752348 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NFRKB NM_006165 exon8 c.A1155G p.E385E TTACTCTTCCTTG . 120.0 6.0 96.0 0.0 . 101 . . Atlas-SNP SLC6A13 6540 hgsc.bcm.edu hg19 12 352865 352865 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLC6A13 NM_016615 exon3 c.A317G p.K106R CAGATCTTCCTCC . 114.0 5.0 134.0 0.0 . 62 . . Atlas-SNP EFCAB4B 84766 hgsc.bcm.edu hg19 12 3788250 3788250 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EFCAB4B NM_001144958 exon6 c.A355G p.S119G TCTGGCTGAAGAA . 69.0 4.0 130.0 0.0 . 100 . . Atlas-SNP PARP11 57097 hgsc.bcm.edu hg19 12 3931065 3931065 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PARP11 NM_020367 exon6 c.C522T p.N174N ATCTAGGTTTTGA . 90.0 4.0 119.0 0.0 . 39 . . Atlas-SNP FGF6 2251 hgsc.bcm.edu hg19 12 4553334 4553334 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b FGF6,NS,carcinoma,0,1 FGF6 NM_020996 exon2 c.G415A p.V139I TGGCAACGAAGAG . 95.0 24.0 103.0 0.0 . 40 . . Atlas-SNP APOBEC1 339 hgsc.bcm.edu hg19 12 7805229 7805229 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . APOBEC1 NM_001644 exon3 c.T247C p.S83P TGATGGAGCAGCT . 64.0 4.0 94.0 0.0 . 43 . . Atlas-SNP FOXJ2 55810 hgsc.bcm.edu hg19 12 8202064 8202064 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FOXJ2 NM_018416 exon9 c.T1434C p.G478G GACTGGTCACGTG . 70.0 4.0 81.0 0.0 . 43 . . Atlas-SNP C3AR1 719 hgsc.bcm.edu hg19 12 8212440 8212440 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C3AR1 NM_004054 exon2 c.T342C p.T114T AATGGCAGTAAGC . 81.0 4.0 162.0 0.0 . 61 . . Atlas-SNP PZP 5858 hgsc.bcm.edu hg19 12 9318676 9318676 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PZP NM_002864 exon18 c.A2230G p.T744A TCCAAGTCTCAGG . 89.0 5.0 135.0 0.0 . 422 . . Atlas-SNP KLRF1 51348 hgsc.bcm.edu hg19 12 9994450 9994450 + Missense_Mutation SNP G G A rs111928232 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KLRF1 NM_016523 exon4 c.G377A p.C126Y AGTGTTGTTATTG . 221.0 13.0 230.0 0.0 . 27 . G|0.500;A|0.500 Atlas-SNP LRP6 4040 hgsc.bcm.edu hg19 12 12279675 12279675 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRP6 NM_002336 exon20 c.T4262C p.V1421A AGAGGCACAGAAG . 106.0 5.0 132.0 0.0 . 170 . . Atlas-SNP PTPRO 5800 hgsc.bcm.edu hg19 12 15704607 15704607 + Splice_Site SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PTPRO NM_030667 exon15 c.2558+2T>C . GCTAGGTAAGTTA . 84.0 4.0 128.0 0.0 . 148 . . Atlas-SNP PLEKHA5 54477 hgsc.bcm.edu hg19 12 19410367 19410367 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PLEKHA5 NM_001143821 exon6 c.A433G p.T145A ATTTAGACTTCAC . 79.0 4.0 84.0 0.0 . 198 . . Atlas-SNP PLEKHA5 54477 hgsc.bcm.edu hg19 12 19499936 19499936 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PLEKHA5 NM_001256470 exon24 c.A2718G p.E906E AGAGGAAGTAGTC . 78.0 4.0 128.0 0.0 . 198 . . Atlas-SNP MED21 9412 hgsc.bcm.edu hg19 12 27181241 27181241 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MED21 NM_004264 exon4 c.A282G p.E94E GCTAGAAGAAGAA . 74.0 4.0 90.0 0.0 . 7 . . Atlas-SNP DENND5B 160518 hgsc.bcm.edu hg19 12 31605207 31605207 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b DENND5B,caecum,carcinoma,0,1 DENND5B NM_144973 exon5 c.A1296G p.K432K GTTCTTTTTGTCA . 88.0 4.0 144.0 0.0 . 114 . . Atlas-SNP FGD4 121512 hgsc.bcm.edu hg19 12 32735126 32735126 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FGD4 NM_139241 exon4 c.A325G p.T109A GCTGCCACTCTTA . 100.0 5.0 162.0 0.0 . 86 . . Atlas-SNP DNM1L 10059 hgsc.bcm.edu hg19 12 32854462 32854462 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DNM1L NM_012062 exon2 c.A216G p.Q72Q TTCACAAGAAGAT . 88.0 4.0 93.0 0.0 . 52 . . Atlas-SNP CNTN1 1272 hgsc.bcm.edu hg19 12 41337846 41337846 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CNTN1 NM_001256063 exon14 c.A1557G p.G519G AGTTGGAGAAAAC . 74.0 4.0 132.0 0.0 . 207 . . Atlas-SNP H1FNT 341567 hgsc.bcm.edu hg19 12 48723755 48723755 + Silent SNP G G C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b H1FNT,NS,carcinoma,0,1 H1FNT NM_181788 exon1 c.G681C p.P227P CACGCCGAGGTCA . 37.0 8.0 51.0 1.0 . 30 . . Atlas-SNP ADCY6 112 hgsc.bcm.edu hg19 12 49168824 49168824 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ADCY6 NM_020983 exon12 c.T1994C p.V665A GGATCCACCTTCC . 85.0 5.0 100.0 0.0 . 81 . . Atlas-SNP DDN 23109 hgsc.bcm.edu hg19 12 49391772 49391772 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b DDN_ENST00000421952,NS,carcinoma,0,2 DDN NM_015086 exon2 c.G887T p.G296V GGGGATCCCCCCA . 54.0 3.0 100.0 0.0 . 54 . . Atlas-SNP PRPF40B 25766 hgsc.bcm.edu hg19 12 50036726 50036726 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PRPF40B NM_001031698 exon22 c.A2132G p.H711R GCCAGCACCTCCA . 120.0 5.0 138.0 0.0 . 83 . . Atlas-SNP KRT84 3890 hgsc.bcm.edu hg19 12 52779324 52779324 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KRT84 NM_033045 exon1 c.A46G p.N16D TGAAGTTGCCCAC . 61.0 4.0 83.0 0.0 . 61 . . Atlas-SNP RDH16 8608 hgsc.bcm.edu hg19 12 57351246 57351246 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RDH16 NM_003708 exon1 c.A1G p.M1V GCCACATGGCTTT . 79.0 9.0 113.0 0.0 . 33 . . Atlas-SNP NXPH4 11247 hgsc.bcm.edu hg19 12 57619481 57619481 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NXPH4 NM_007224 exon2 c.A878G p.K293R TGCAGAAGGTGTG . 53.0 5.0 52.0 0.0 . 40 . . Atlas-SNP MON2 23041 hgsc.bcm.edu hg19 12 62887709 62887709 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MON2 NM_015026 exon3 c.A190G p.S64G GAGAACAGCTCAG . 86.0 4.0 142.0 0.0 . 160 . . Atlas-SNP TBK1 29110 hgsc.bcm.edu hg19 12 64878199 64878199 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TBK1 NM_013254 exon9 c.T1109C p.F370S AACATTTCCCTAA . 98.0 4.0 141.0 0.0 . 149 . . Atlas-SNP CPM 1368 hgsc.bcm.edu hg19 12 69326513 69326513 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CPM NM_001005502 exon2 c.T105C p.V35V TTGGGCAACAGTC . 108.0 5.0 156.0 0.0 . 30 . . Atlas-SNP FRS2 10818 hgsc.bcm.edu hg19 12 69968235 69968235 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FRS2 NM_001042555 exon10 c.A1027G p.R343G CAGAGAAGAACTG . 64.0 4.0 89.0 0.0 . 88 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70989899 70989899 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PTPRB NM_001109754 exon5 c.A1188G p.K396K ATTGTATTTACTA . 98.0 5.0 149.0 0.0 . 676 . . Atlas-SNP GLIPR1L2 144321 hgsc.bcm.edu hg19 12 75816822 75816822 + Silent SNP A A G rs75261424 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GLIPR1L2 NM_152436 exon4 c.A723G p.K241K CAAGAAAAATAAG . 113.0 7.0 124.0 0.0 . 54 . . Atlas-SNP ATP2B1 490 hgsc.bcm.edu hg19 12 90014010 90014010 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ATP2B1 NM_001001323 exon10 c.A1595G p.E532G TCTTTCTCTGGTG . 96.0 4.0 139.0 0.0 . 191 . . Atlas-SNP CCER1 196477 hgsc.bcm.edu hg19 12 91348403 91348403 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_152638 exon1 c.T117C p.H39H CCTTCGATGGCAG . 47.0 5.0 34.0 0.0 . . . . Atlas-SNP POLR3B 55703 hgsc.bcm.edu hg19 12 106824062 106824062 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . POLR3B NM_018082 exon14 c.T1275C p.S425S TTGGTCTTTAAAG . 92.0 4.0 76.0 0.0 . 123 . . Atlas-SNP MYO1H 283446 hgsc.bcm.edu hg19 12 109853345 109853345 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MYO1H NM_001101421 exon14 c.G1469A p.G490D TGGCTGGTCCAAA . 80.0 4.0 71.0 0.0 . 98 . . Atlas-SNP ERP29 10961 hgsc.bcm.edu hg19 12 112451275 112451275 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ERP29 NM_001034025 exon1 c.T6C p.A2A TATGGCTGCCGCT . 86.0 4.0 58.0 0.0 . 17 . . Atlas-SNP OAS1 4938 hgsc.bcm.edu hg19 12 113357213 113357213 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OAS1 NM_016816 exon6 c.A1058G p.D353G GTGCAGACGATGA . 85.0 4.0 78.0 0.0 . 128 . . Atlas-SNP IQCD 115811 hgsc.bcm.edu hg19 12 113633675 113633675 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . IQCD NM_138451 exon3 c.A749G p.D250G ACAGCGTCCAGAT . 81.0 4.0 98.0 0.0 . 32 . . Atlas-SNP VSIG10 54621 hgsc.bcm.edu hg19 12 118533406 118533406 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . VSIG10 NM_019086 exon2 c.A293G p.E98G ATTCCCTCATCTC . 92.0 5.0 83.0 0.0 . 41 . . Atlas-SNP GPR133 283383 hgsc.bcm.edu hg19 12 131616271 131616271 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GPR133 NM_198827 exon21 c.T2177C p.V726A TGCAGGTCAACAT . 167.0 7.0 140.0 0.0 . 136 . . Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132549247 132549247 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EP400 NM_015409 exon48 c.A8369G p.Q2790R AACTGCAGATGCC . 64.0 4.0 64.0 0.0 . 370 . . Atlas-SNP GALNT9 50614 hgsc.bcm.edu hg19 12 132688051 132688051 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b GALNT9_ENST00000328957,NS,carcinoma,0,2 GALNT9 NM_001122636 exon7 c.C1262T p.S421L CTCACCGACATGG . 74.0 4.0 65.0 0.0 . 74 . . Atlas-SNP FBRSL1 57666 hgsc.bcm.edu hg19 12 133102339 133102339 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FBRSL1 NM_001142641 exon3 c.A509G p.K170R TGTCCAAAGGGGG . 80.0 4.0 58.0 0.0 . 47 . . Atlas-SNP POLE 5426 hgsc.bcm.edu hg19 12 133218836 133218836 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . POLE NM_006231 exon38 c.T5100C p.D1700D GTTGTCATCAGCC . 99.0 4.0 114.0 0.0 . 416 . . Atlas-SNP SKA3 221150 hgsc.bcm.edu hg19 13 21742126 21742126 + Splice_Site SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SKA3 NM_001166017 exon5 c.743+1G>T . TGCTTACCTTTTA . 120.0 15.0 142.0 0.0 . 76 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23906630 23906630 + Silent SNP A A G rs148605896 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SACS NM_014363 exon10 c.T11385C p.A3795A CACAAAAGCAACC . 110.0 5.0 120.0 0.0 . 871 . A|0.999;C|0.001 Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23911630 23911630 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SACS NM_014363 exon10 c.G6385A p.G2129R ATCTCCCATCTTT . 94.0 4.0 131.0 0.0 . 871 . . Atlas-SNP AMER2 219287 hgsc.bcm.edu hg19 13 25744544 25744544 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_152704 exon1 c.A1214G p.K405R GCCGGCTTGCCTG . 45.0 4.0 60.0 0.0 . . . . Atlas-SNP PRHOXNB 646625 hgsc.bcm.edu hg19 13 28562605 28562605 + Missense_Mutation SNP T T C rs3897926 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b PRHOXNB,NS,carcinoma,0,1 PRHOXNB NM_001105577 exon1 c.A170G p.Q57R CCTGACTGTGCAA . 68.0 3.0 82.0 0.0 . 6 . T|0.723;G|0.277 Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 28913323 28913323 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FLT1 NM_002019 exon17 c.C2470T p.R824W TCTCCCGGGCAAA . 88.0 4.0 124.0 0.0 . 393 . . Atlas-SNP BRCA2 675 hgsc.bcm.edu hg19 13 32914823 32914823 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . BRCA2 NM_000059 exon11 c.A6331G p.K2111E GTTGATAAGAGAA . 96.0 4.0 102.0 0.0 . 812 . . Atlas-SNP N4BP2L2 10443 hgsc.bcm.edu hg19 13 33012840 33012840 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . N4BP2L2 NM_033111 exon8 c.T2184C p.L728L CCAGTCAAGGGGA . 111.0 5.0 96.0 0.0 . 90 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 36229065 36229065 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NBEA NM_015678 exon53 c.T8046C p.C2682C ACATTGTTTTGTG . 92.0 4.0 127.0 0.0 . 340 . . Atlas-SNP SUPT20H 55578 hgsc.bcm.edu hg19 13 37586423 37586423 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_017569 exon24 c.A2007G p.Q669Q TGAACCTTGCTCA . 50.0 5.0 53.0 0.0 . . . . Atlas-SNP VWA8 23078 hgsc.bcm.edu hg19 13 42306265 42306265 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_015058 exon22 c.T2453C p.L818P GGCTGAAGCGTAA . 32.0 4.0 51.0 0.0 . . . . Atlas-SNP KPNA3 3839 hgsc.bcm.edu hg19 13 50285129 50285129 + Silent SNP T T C rs370734199 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KPNA3 NM_002267 exon11 c.A801G p.S267S CAAGTATGACAGA . 68.0 4.0 100.0 0.0 . 53 . . Atlas-SNP PIBF1 10464 hgsc.bcm.edu hg19 13 73401963 73401963 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PIBF1 NM_006346 exon8 c.T1008C p.H336H TGCTCATGAAGAG . 50.0 4.0 73.0 0.0 . 65 . . Atlas-SNP NALCN 259232 hgsc.bcm.edu hg19 13 102047689 102047689 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NALCN NM_052867 exon3 c.G136T p.A46S TGATGGCACAGAT . 64.0 4.0 89.0 0.0 . 431 . . Atlas-SNP TEX29 121793 hgsc.bcm.edu hg19 13 111995257 111995257 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_152324 exon5 c.A394G p.S132G ATGAAGAGTGACG . 52.0 4.0 68.0 0.0 . . . . Atlas-SNP LAMP1 3916 hgsc.bcm.edu hg19 13 113973926 113973926 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LAMP1 NM_005561 exon5 c.C705T p.S235S GGCCAGCATGGGG . 35.0 4.0 43.0 0.0 . 41 . . Atlas-SNP OR4K14 122740 hgsc.bcm.edu hg19 14 20482991 20482991 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OR4K14 NM_001004712 exon1 c.A362G p.Y121C CTGTCATAGGCCA . 86.0 4.0 124.0 0.0 . 86 . . Atlas-SNP OR6S1 341799 hgsc.bcm.edu hg19 14 21109228 21109228 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OR6S1 NM_001001968 exon1 c.T623C p.L208P ATGACGAGGGAGG . 46.0 4.0 67.0 0.0 . 49 . . Atlas-SNP MMP14 4323 hgsc.bcm.edu hg19 14 23310816 23310816 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MMP14 NM_004995 exon2 c.A225G p.Q75Q CTTGCAAGTAACA . 44.0 4.0 48.0 0.0 . 40 . . Atlas-SNP DHRS2 10202 hgsc.bcm.edu hg19 14 24112421 24112421 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b DHRS2_ENST00000344777,NS,carcinoma,0,2 DHRS2 NM_182908 exon5 c.G481A p.E161K TACATGGAGAACA . 58.0 3.0 85.0 0.0 . 78 . . Atlas-SNP LRRC16B 90668 hgsc.bcm.edu hg19 14 24533482 24533482 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRRC16B NM_138360 exon32 c.A3007G p.N1003D CAGGAGAATGGGA . 56.0 4.0 51.0 0.0 . 120 . . Atlas-SNP AKAP6 9472 hgsc.bcm.edu hg19 14 33293955 33293955 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AKAP6 NM_004274 exon13 c.A6936G p.K2312K TGAAAAACGACAT . 111.0 5.0 137.0 0.0 . 308 . . Atlas-SNP KIAA0391 9692 hgsc.bcm.edu hg19 14 35596745 35596745 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA0391 NM_014672 exon4 c.T1095C p.Y365Y AGAATATGAATGT . 92.0 4.0 110.0 0.0 . 35 . . Atlas-SNP RALGAPA1 253959 hgsc.bcm.edu hg19 14 36017712 36017712 + Splice_Site SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RALGAPA1 NM_014990 exon41 c.6134+2T>C . TGTCTTACCTTCA . 91.0 4.0 120.0 0.0 . 289 . . Atlas-SNP CLEC14A 161198 hgsc.bcm.edu hg19 14 38724408 38724408 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b CLEC14A,NS,carcinoma,0,1 CLEC14A NM_175060 exon1 c.G820T p.A274S CCGTAGCACATTC . 59.0 3.0 74.0 0.0 . 83 . . Atlas-SNP METTL21D 79609 hgsc.bcm.edu hg19 14 50583176 50583176 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . METTL21D NM_024558 exon1 c.A95G p.Q32R CTATACTGCTGTA . 84.0 4.0 98.0 0.0 . 11 . . Atlas-SNP DHRS7 51635 hgsc.bcm.edu hg19 14 60619873 60619873 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DHRS7 NM_016029 exon4 c.T417C p.G139G CATTCCACCATTG . 102.0 5.0 123.0 0.0 . 31 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64630170 64630170 + Silent SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SYNE2 NM_182914 exon89 c.C16350A p.S5450S AAATTCCAGTGTC . 97.0 4.0 106.0 0.0 . 577 . . Atlas-SNP YLPM1 56252 hgsc.bcm.edu hg19 14 75301993 75301993 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . YLPM1 NM_019589 exon20 c.A6320G p.K2107R AAGAGAAGAAGGA . 100.0 4.0 106.0 0.0 . 298 . . Atlas-SNP POMT2 29954 hgsc.bcm.edu hg19 14 77765880 77765880 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . POMT2 NM_013382 exon7 c.G841A p.A281T CACGAGCAGTCAG . 124.0 5.0 95.0 0.0 . 47 . . Atlas-SNP FOXN3 1112 hgsc.bcm.edu hg19 14 89878687 89878687 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FOXN3 NM_005197 exon2 c.T134C p.L45P TCAGGCAGAGAAA . 83.0 4.0 92.0 0.0 . 78 . . Atlas-SNP RPS6KA5 9252 hgsc.bcm.edu hg19 14 91369167 91369167 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RPS6KA5 NM_182398 exon9 c.T1104C p.S368S CTTCTCAGAACTC . 125.0 5.0 168.0 0.0 . 135 . . Atlas-SNP GPR68 8111 hgsc.bcm.edu hg19 14 91700443 91700443 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GPR68 NM_001177676 exon2 c.G952A p.E318K AGGCCTCCCTGGC . 23.0 6.0 18.0 0.0 . 32 . . Atlas-SNP SERPINA11 256394 hgsc.bcm.edu hg19 14 94914957 94914957 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SERPINA11 NM_001080451 exon2 c.C155T p.P52L ATGGTGGGTGTGA . 92.0 4.0 96.0 0.0 . 53 . . Atlas-SNP TCL1B 9623 hgsc.bcm.edu hg19 14 96157133 96157133 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TCL1B NM_004918 exon2 c.T223C p.S75P CTACTCTCCTCCG . 95.0 6.0 76.0 0.0 . 30 . . Atlas-SNP HSP90AA1 3320 hgsc.bcm.edu hg19 14 102551266 102551266 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b .,1 HSP90AA1 NM_001017963 exon6 c.A1099G p.K367E TTTCTTTTTCTTC . 189.0 9.0 249.0 0.0 . 65 . . Atlas-SNP HSP90AA1 3320 hgsc.bcm.edu hg19 14 102551269 102551269 + Missense_Mutation SNP C C T rs3208444 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HSP90AA1 NM_001017963 exon6 c.G1096A p.E366K CTTTTTCTTCTTC . 186.0 11.0 246.0 0.0 . 65 . . Atlas-SNP GPR132 29933 hgsc.bcm.edu hg19 14 105517339 105517339 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GPR132 NM_013345 exon4 c.T1135C p.S379P AGCAGGACTCCTC . 99.0 5.0 124.0 0.0 . 40 . . Atlas-SNP MKRN3 7681 hgsc.bcm.edu hg19 15 23811668 23811668 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b MKRN3,right_upper_lobe,carcinoma,0,1 MKRN3 NM_005664 exon1 c.G739A p.A247T TATTATGCTTCCA . 66.0 3.0 69.0 0.0 . 155 . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28493786 28493786 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HERC2 NM_004667 exon21 c.T3147C p.A1049A CAATGAAGCAGAT . 82.0 4.0 125.0 0.0 . 501 . . Atlas-SNP FAM189A1 23359 hgsc.bcm.edu hg19 15 29488731 29488731 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b FAM189A1,colon,carcinoma,0,1 FAM189A1 NM_015307 exon4 c.A425G p.E142G TGCAGCTCACAGC . 109.0 5.0 111.0 1.0 . 20 . . Atlas-SNP FMN1 342184 hgsc.bcm.edu hg19 15 33359640 33359640 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FMN1 NM_001103184 exon1 c.A446G p.D149G TCAGAGTCAGAAT . 94.0 5.0 124.0 0.0 . 174 . . Atlas-SNP PGBD4 161779 hgsc.bcm.edu hg19 15 34395101 34395101 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PGBD4 NM_152595 exon1 c.A369G p.E123E TAGAGAAACAAAT . 78.0 4.0 118.0 0.0 . 58 . . Atlas-SNP C15orf55 256646 hgsc.bcm.edu hg19 15 34640689 34640689 + Nonsense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C15orf55 NM_175741 exon2 c.G536A p.W179X AAGCTTGGCCAGG . 56.0 4.0 63.0 0.0 . 110 . . Atlas-SNP C15orf41 84529 hgsc.bcm.edu hg19 15 37001438 37001438 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C15orf41 NM_001130010 exon9 c.C559A p.R187S CAGCTTCGTGCAA . 93.0 4.0 153.0 0.0 . 24 . . Atlas-SNP EXD1 161829 hgsc.bcm.edu hg19 15 41482300 41482300 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EXD1 NM_152596 exon9 c.A717G p.R239R AACAGGTCGGATG . 90.0 4.0 98.0 0.0 . 52 . . Atlas-SNP RPAP1 26015 hgsc.bcm.edu hg19 15 41819624 41819624 + Silent SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RPAP1 NM_015540 exon12 c.C1608A p.I536I TACCTTGATGACA . 96.0 4.0 117.0 0.0 . 111 . . Atlas-SNP SPTBN5 51332 hgsc.bcm.edu hg19 15 42167762 42167762 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPTBN5 NM_016642 exon22 c.T4076C p.L1359P CCTTGAAGCCTGG . 97.0 4.0 117.0 0.0 . 171 . . Atlas-SNP TMEM87A 25963 hgsc.bcm.edu hg19 15 42531866 42531866 + Splice_Site SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TMEM87A NM_015497 exon9 c.684+2T>C . TCACTTACAATCA . 82.0 4.0 99.0 0.0 . 56 . . Atlas-SNP HYPK 25764 hgsc.bcm.edu hg19 15 44093963 44093963 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_016400 exon4 c.A349G p.M117V GAACACATGGGCA . 97.0 4.0 81.0 0.0 . . . . Atlas-SNP SHF 90525 hgsc.bcm.edu hg19 15 45467612 45467612 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SHF NM_138356 exon4 c.T457C p.S153P CCTTGGAGCCCCG . 75.0 4.0 75.0 0.0 . 27 . . Atlas-SNP SQRDL 58472 hgsc.bcm.edu hg19 15 45965905 45965905 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SQRDL NM_021199 exon5 c.A560G p.E187G TCAAAGAGGGCAA . 109.0 5.0 130.0 0.0 . 27 . . Atlas-SNP DTWD1 56986 hgsc.bcm.edu hg19 15 49935632 49935632 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DTWD1 NM_001144955 exon5 c.C772T p.L258L TACTTTCTGGTAG . 220.0 13.0 255.0 0.0 . 22 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54529885 54529885 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . UNC13C NM_001080534 exon5 c.A3225G p.E1075E TGAGGAACTGGTA . 82.0 4.0 112.0 0.0 . 674 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54707196 54707196 + Missense_Mutation SNP A A T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . UNC13C NM_001080534 exon17 c.A4864T p.N1622Y GAGCTGAACATGG . 111.0 5.0 125.0 0.0 . 674 . . Atlas-SNP TPM1 7168 hgsc.bcm.edu hg19 15 63349281 63349281 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TPM1 NM_001018007 exon3 c.T338C p.L113P AGAAGCTGGAGGA . 84.0 4.0 86.0 0.0 . 59 . . Atlas-SNP ANKDD1A 348094 hgsc.bcm.edu hg19 15 65219192 65219192 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ANKDD1A NM_182703 exon6 c.A564G p.K188K TGTCAAAGACAAG . 63.0 4.0 112.0 0.0 . 47 . . Atlas-SNP CILP 8483 hgsc.bcm.edu hg19 15 65499173 65499173 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CILP NM_003613 exon4 c.A371G p.Q124R GGCCGCTGCTCCC . 45.0 4.0 60.0 0.0 . 124 . . Atlas-SNP ITGA11 22801 hgsc.bcm.edu hg19 15 68599732 68599732 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ITGA11 NM_001004439 exon28 c.A3335G p.Q1112R TGGAACTGCCTCT . 86.0 6.0 88.0 0.0 . 110 . . Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72119321 72119321 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MYO9A NM_006901 exon42 c.G7247A p.R2416Q TGCTTTCGCAACT . 59.0 7.0 59.0 0.0 . 203 . . Atlas-SNP ZNF592 9640 hgsc.bcm.edu hg19 15 85327556 85327556 + Silent SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b ZNF592,NS,carcinoma,0,1 ZNF592 NM_014630 exon4 c.G1650T p.L550L CCCACTGATTGTA . 63.0 3.0 103.0 0.0 . 95 . . Atlas-SNP SLC28A1 9154 hgsc.bcm.edu hg19 15 85476374 85476374 + Splice_Site SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLC28A1 NM_004213 exon13 c.1084-2A>G . TCTTGCAGATCGA . 121.0 5.0 173.0 0.0 . 118 . . Atlas-SNP NTRK3 4916 hgsc.bcm.edu hg19 15 88423565 88423565 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NTRK3 NM_001012338 exon19 c.G2270A p.G757E ATCACCCCGAAGC . 131.0 6.0 167.0 0.0 . 587 . . Atlas-SNP BLM 641 hgsc.bcm.edu hg19 15 91328233 91328233 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . BLM NM_000057 exon14 c.T2745C p.A915A CGCTGCTCTTGCT . 84.0 4.0 99.0 0.0 . 122 . . Atlas-SNP FES 2242 hgsc.bcm.edu hg19 15 91434318 91434318 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FES NM_002005 exon11 c.A1427G p.H476R TGGTGCACTCTGG . 104.0 5.0 91.0 0.0 . 102 . . Atlas-SNP UNC45A 55898 hgsc.bcm.edu hg19 15 91491925 91491925 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . UNC45A NM_018671 exon13 c.G1779A p.L593L AGCGCTGGTGAAC . 93.0 4.0 88.0 0.0 . 57 . . Atlas-SNP ARRDC4 91947 hgsc.bcm.edu hg19 15 98512600 98512600 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ARRDC4 NM_183376 exon5 c.T873C p.Y291Y GGACTATTCCTTA . 89.0 4.0 121.0 0.0 . 30 . . Atlas-SNP CCNF 899 hgsc.bcm.edu hg19 16 2503452 2503452 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCNF NM_001761 exon15 c.A1629G p.T543T AGTGACACAAGAC . 65.0 4.0 70.0 0.0 . 110 . . Atlas-SNP CREBBP 1387 hgsc.bcm.edu hg19 16 3799678 3799678 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CREBBP NM_004380 exon21 c.T3786C p.I1262I CTTTGAAATTGTC . 123.0 5.0 114.0 0.0 . 546 . . Atlas-SNP ADCY9 115 hgsc.bcm.edu hg19 16 4164949 4164949 + Silent SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ADCY9 NM_001116 exon2 c.C495A p.T165T CAGCTTGGTGAAG . 50.0 4.0 70.0 0.0 . 151 . . Atlas-SNP VASN 114990 hgsc.bcm.edu hg19 16 4432547 4432547 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . VASN NM_138440 exon2 c.C1669T p.P557S ACACCCCCAGCCG . 46.0 4.0 34.0 0.0 . 21 . . Atlas-SNP PPL 5493 hgsc.bcm.edu hg19 16 4942072 4942072 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PPL NM_002705 exon15 c.A1793G p.E598G AGGTGCTCGTATT . 88.0 4.0 105.0 0.0 . 168 . . Atlas-SNP TXNDC11 51061 hgsc.bcm.edu hg19 16 11785663 11785663 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TXNDC11 NM_015914 exon8 c.A1383G p.P461P GCACTGTGGCACG . 93.0 4.0 77.0 0.0 . 75 . . Atlas-SNP SMG1 23049 hgsc.bcm.edu hg19 16 18849391 18849391 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SMG1 NM_015092 exon45 c.A7358G p.E2453G TCCATCTCTCTCT . 123.0 5.0 144.0 0.0 . 401 . . Atlas-SNP HS3ST2 9956 hgsc.bcm.edu hg19 16 22926348 22926348 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b HS3ST2,colon,carcinoma,0,1 HS3ST2 NM_006043 exon2 c.G569T p.R190L CTCGACGCATCTT . 64.0 3.0 80.0 0.0 . 59 . . Atlas-SNP ZNF689 115509 hgsc.bcm.edu hg19 16 30615611 30615611 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF689 NM_138447 exon3 c.T1477C p.S493P GACTGGAGCCCCC . 84.0 4.0 85.0 0.0 . 48 . . Atlas-SNP RNF40 9810 hgsc.bcm.edu hg19 16 30783507 30783507 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RNF40 NM_014771 exon19 c.A2825G p.Y942C AGGAGTACAAGGT . 88.0 4.0 101.0 0.0 . 83 . . Atlas-SNP ITGAX 3687 hgsc.bcm.edu hg19 16 31384577 31384577 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ITGAX NM_000887 exon20 c.T2374C p.S792P TTGAAGTCCCTGC . 99.0 4.0 128.0 0.0 . 198 . . Atlas-SNP ZNF843 283933 hgsc.bcm.edu hg19 16 31447207 31447207 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF843 NM_001136509 exon2 c.T964C p.S322P GGTTCGAGGGCGG . 81.0 6.0 83.0 0.0 . 14 . . Atlas-SNP ZNF267 10308 hgsc.bcm.edu hg19 16 31927484 31927484 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF267 NM_003414 exon4 c.C1914T p.G638G ATGTGGCAAAGCC . 69.0 4.0 92.0 0.0 . 94 . . Atlas-SNP CYLD 1540 hgsc.bcm.edu hg19 16 50818357 50818357 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b CYLD,right_upper_lobe,carcinoma,0,1 CYLD NM_015247 exon13 c.G1944A p.L648L TCCTCTGAGAATG . 47.0 2.0 62.0 0.0 . 150 . . Atlas-SNP SLC12A3 6559 hgsc.bcm.edu hg19 16 56924197 56924197 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLC12A3 NM_001126108 exon19 c.A2297G p.D766G CCTTTGATTTCAA . 89.0 4.0 91.0 0.0 . 99 . . Atlas-SNP NLRC5 84166 hgsc.bcm.edu hg19 16 57067552 57067552 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NLRC5 NM_032206 exon11 c.A2514G p.K838K GAGGAAAGGGGCT . 70.0 4.0 67.0 0.0 . 186 . . Atlas-SNP CNGB1 1258 hgsc.bcm.edu hg19 16 57998104 57998104 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CNGB1 NM_001297 exon4 c.A220G p.T74A CCTTGGTCTCTGG . 89.0 4.0 83.0 0.0 . 105 . . Atlas-SNP LRRC29 26231 hgsc.bcm.edu hg19 16 67241508 67241508 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRRC29 NM_001004055 exon6 c.A672G p.X224W CTGGCCTCAGAGT . 53.0 4.0 61.0 0.0 . 13 . . Atlas-SNP CTCF 10664 hgsc.bcm.edu hg19 16 67644896 67644896 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CTCF NM_006565 exon3 c.T161C p.V54A AGGATGTCAACAG . 56.0 4.0 80.0 0.0 . 193 . . Atlas-SNP EDC4 23644 hgsc.bcm.edu hg19 16 67918040 67918040 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b EDC4,NS,carcinoma,0,1 EDC4 NM_014329 exon29 c.A4195G p.S1399G ACCCCCAGCCTCC . 39.0 2.0 36.0 0.0 . 101 . . Atlas-SNP NFATC3 4775 hgsc.bcm.edu hg19 16 68208375 68208375 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NFATC3 NM_173163 exon6 c.T1873C p.F625L TCTAATTTTCTTC . 74.0 4.0 104.0 0.0 . 190 . . Atlas-SNP CHTF8 54921 hgsc.bcm.edu hg19 16 69154536 69154536 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CHTF8 NM_001039690 exon4 c.T158C p.I53T CCCACGATCAGCA . 79.0 4.0 90.0 0.0 . 5 . . Atlas-SNP NIP7 51388 hgsc.bcm.edu hg19 16 69375544 69375544 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NIP7 NM_016101 exon5 c.A532G p.T178A GAAGAGACGTTGA . 84.0 5.0 137.0 0.0 . 20 . . Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74528672 74528672 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GLG1 NM_001145667 exon6 c.T1036C p.S346P TCATGGATTCTTC . 88.0 4.0 94.0 0.0 . 106 . . Atlas-SNP ZFP1 162239 hgsc.bcm.edu hg19 16 75203861 75203861 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZFP1 NM_153688 exon4 c.A853G p.T285A CTCACCACACACC . 81.0 4.0 118.0 0.0 . 28 . . Atlas-SNP WWOX 51741 hgsc.bcm.edu hg19 16 78466543 78466543 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . WWOX NM_016373 exon8 c.C950T p.T317M GGGTCACGTCGAA . 129.0 6.0 179.0 0.0 . 98 . . Atlas-SNP DNAAF1 123872 hgsc.bcm.edu hg19 16 84199541 84199541 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DNAAF1 NM_178452 exon7 c.A1016G p.E339G AGAGAGAGAGTCA . 94.0 4.0 116.0 0.0 . 81 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88499778 88499778 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF469 NM_001127464 exon2 c.T5816C p.L1939P CAACTCTCCCTGC . 54.0 4.0 52.0 0.0 . 121 . . Atlas-SNP MVD 4597 hgsc.bcm.edu hg19 16 88721665 88721665 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MVD NM_002461 exon7 c.T839C p.I280T CAGGAGATGGCAT . 119.0 5.0 98.0 0.0 . 27 . . Atlas-SNP FAM57A 79850 hgsc.bcm.edu hg19 17 644578 644578 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b FAM57A,NS,carcinoma,0,1 FAM57A NM_024792 exon5 c.G542A p.G181E TGAATGGAATCCT . 115.0 5.0 213.0 2.0 . 17 . . Atlas-SNP SMG6 23293 hgsc.bcm.edu hg19 17 2202373 2202373 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SMG6 NM_017575 exon2 c.T1674C p.P558P AGGTAGAGGGCTA . 84.0 5.0 170.0 0.0 . 97 . . Atlas-SNP OR1E2 8388 hgsc.bcm.edu hg19 17 3336727 3336727 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OR1E2 NM_003554 exon1 c.T409C p.F137L GGAGGAAGCAGAT . 116.0 6.0 260.0 0.0 . 25 . . Atlas-SNP SPATA22 84690 hgsc.bcm.edu hg19 17 3365782 3365782 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPATA22 NM_032598 exon5 c.T324C p.G108G CCTCCAACCACCC . 64.0 4.0 122.0 0.0 . 49 . . Atlas-SNP ZZEF1 23140 hgsc.bcm.edu hg19 17 3917468 3917468 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZZEF1 NM_015113 exon51 c.T8329C p.Y2777H AGCGGTAATACAG . 85.0 5.0 156.0 0.0 . 195 . . Atlas-SNP CAMTA2 23125 hgsc.bcm.edu hg19 17 4883056 4883056 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CAMTA2 NM_001171167 exon9 c.A1630G p.I544V CAGGGATGCTTGG . 42.0 4.0 91.0 0.0 . 93 . . Atlas-SNP FAM64A 54478 hgsc.bcm.edu hg19 17 6352638 6352638 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FAM64A NM_019013 exon4 c.T597C p.S199S CGAGTCTGACAGT . 85.0 4.0 134.0 0.0 . 20 . . Atlas-SNP PITPNM3 83394 hgsc.bcm.edu hg19 17 6367544 6367544 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PITPNM3 NM_031220 exon16 c.T2102C p.V701A CGCGGCACATTGT . 63.0 4.0 100.0 0.0 . 91 . . Atlas-SNP PITPNM3 83394 hgsc.bcm.edu hg19 17 6386875 6386875 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PITPNM3 NM_031220 exon6 c.T549C p.C183C GGCAGGACAGGGG . 83.0 4.0 200.0 0.0 . 91 . . Atlas-SNP TMEM95 339168 hgsc.bcm.edu hg19 17 7259191 7259191 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TMEM95 NM_198154 exon3 c.T261C p.Y87Y TTCATATTGGAGT . 72.0 4.0 130.0 0.0 . 11 . . Atlas-SNP TMEM102 284114 hgsc.bcm.edu hg19 17 7340050 7340050 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TMEM102 NM_178518 exon3 c.C752T p.P251L CAAAGCCGTCGGA . 72.0 4.0 105.0 0.0 . 11 . . Atlas-SNP ALOXE3 59344 hgsc.bcm.edu hg19 17 8011902 8011902 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ALOXE3 NM_001165960 exon13 c.T1964C p.V655A TCTGAGACAAAGC . 58.0 4.0 82.0 0.0 . 145 . . Atlas-SNP MYO15A 51168 hgsc.bcm.edu hg19 17 18063265 18063265 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MYO15A NM_016239 exon55 c.A9320G p.E3107G ACCATGAGGTCAT . 66.0 4.0 95.0 0.0 . 268 . . Atlas-SNP SPECC1 92521 hgsc.bcm.edu hg19 17 20108053 20108053 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPECC1 NM_001033553 exon4 c.G691A p.E231K CTTGAGGAGAAGA . 87.0 7.0 87.0 0.0 . 100 . . Atlas-SNP SUPT6H 6830 hgsc.bcm.edu hg19 17 27025001 27025001 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SUPT6H NM_003170 exon32 c.A4401G p.E1467E CAAGGAACTGCCC . 58.0 4.0 47.0 0.0 . 165 . . Atlas-SNP RAB34 83871 hgsc.bcm.edu hg19 17 27042082 27042082 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RAB34 NM_001142625 exon9 c.A746G p.K249R TCAGCCTTCATCT . 70.0 4.0 86.0 0.0 . 44 . . Atlas-SNP PIPOX 51268 hgsc.bcm.edu hg19 17 27371932 27371932 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PIPOX NM_016518 exon2 c.A170G p.K57R TCCGAAAGGCGTA . 114.0 5.0 147.0 0.0 . 42 . . Atlas-SNP MYO18A 399687 hgsc.bcm.edu hg19 17 27414105 27414105 + Missense_Mutation SNP T T A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MYO18A NM_078471 exon38 c.A5561T p.K1854M GTCAGCTTCTCCA . 144.0 52.0 174.0 0.0 . 217 . . Atlas-SNP AP2B1 163 hgsc.bcm.edu hg19 17 33925250 33925250 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AP2B1 NM_001282 exon3 c.A39G p.G13G TGCAGGAGAAATA . 85.0 4.0 110.0 0.0 . 70 . . Atlas-SNP CCL5 6352 hgsc.bcm.edu hg19 17 34205643 34205643 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCL5 NM_002985 exon2 c.A77G p.Y26C GAGGAATCTGGAA . 75.0 4.0 112.0 0.0 . 6 . . Atlas-SNP GRB7 2886 hgsc.bcm.edu hg19 17 37901211 37901211 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GRB7 NM_001242442 exon9 c.T1054C p.W352R ACCTGCTGGCTGG . 83.0 4.0 84.0 0.0 . 48 . . Atlas-SNP MED24 9862 hgsc.bcm.edu hg19 17 38179530 38179530 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MED24 NM_014815 exon20 c.C2104T p.P702S TGGGGGGCAGCAG . 94.0 20.0 128.0 0.0 . 89 . . Atlas-SNP KRT19 3880 hgsc.bcm.edu hg19 17 39680207 39680207 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KRT19 NM_002276 exon6 c.T991C p.F331L CTCCAAAGCGCGC . 121.0 5.0 96.0 0.0 . 41 . . Atlas-SNP CCR10 2826 hgsc.bcm.edu hg19 17 40831707 40831707 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCR10 NM_016602 exon2 c.G953A p.R318H TCCTGGCGGAAGC . 63.0 20.0 59.0 0.0 . 7 . . Atlas-SNP PLEKHM1 9842 hgsc.bcm.edu hg19 17 43516846 43516846 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PLEKHM1 NM_014798 exon11 c.T3056C p.V1019A TACCTGACTGTGG . 101.0 5.0 145.0 0.0 . 69 . . Atlas-SNP NPEPPS 9520 hgsc.bcm.edu hg19 17 45679095 45679095 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NPEPPS NM_006310 exon15 c.A1722G p.K574K TGTCAAACCAGAC . 118.0 5.0 147.0 0.0 . 59 . . Atlas-SNP TBX21 30009 hgsc.bcm.edu hg19 17 45822240 45822240 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TBX21 NM_013351 exon6 c.C1116T p.D372D CCCCGACCTTCCT . 66.0 4.0 75.0 0.0 . 50 . . Atlas-SNP NFE2L1 4779 hgsc.bcm.edu hg19 17 46128683 46128683 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NFE2L1 NM_003204 exon2 c.A203G p.H68R GTATCCACCCCAA . 81.0 4.0 99.0 0.0 . 60 . . Atlas-SNP NFE2L1 4779 hgsc.bcm.edu hg19 17 46136184 46136184 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NFE2L1 NM_003204 exon6 c.T1500C p.S500S CTCTTCTTCCTCC . 87.0 4.0 71.0 0.0 . 60 . . Atlas-SNP SPOP 8405 hgsc.bcm.edu hg19 17 47677854 47677854 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPOP NM_001007228 exon10 c.G1011A p.G337G CTTCCACCCAGAG . 82.0 4.0 89.0 0.0 . 91 . . Atlas-SNP SPAG9 9043 hgsc.bcm.edu hg19 17 49072445 49072445 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPAG9 NM_001130528 exon18 c.T2199C p.S733S ATCTAAACTACTC . 79.0 4.0 97.0 0.0 . 151 . . Atlas-SNP KIF2B 84643 hgsc.bcm.edu hg19 17 51901222 51901222 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIF2B NM_032559 exon1 c.C828T p.N276N CTCCAACGAGTTG . 112.0 36.0 102.0 0.0 . 254 . . Atlas-SNP TRIM25 7706 hgsc.bcm.edu hg19 17 54969476 54969476 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TRIM25 NM_005082 exon9 c.A1478G p.Q493R AACCTCTGGGGAT . 72.0 4.0 79.0 0.0 . 52 . . Atlas-SNP MKS1 54903 hgsc.bcm.edu hg19 17 56290446 56290446 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MKS1 NM_017777 exon8 c.A755G p.E252G TCCGTCTCAATCC . 53.0 4.0 74.0 0.0 . 100 . . Atlas-SNP LPO 4025 hgsc.bcm.edu hg19 17 56345321 56345321 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LPO NM_006151 exon13 c.T2105C p.L702P ACAAGCTGGACCT . 77.0 4.0 105.0 0.0 . 73 . . Atlas-SNP MTMR4 9110 hgsc.bcm.edu hg19 17 56586080 56586080 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MTMR4 NM_004687 exon6 c.T416C p.L139P TCGGTCAGCCCCA . 86.0 26.0 118.0 0.0 . 91 . . Atlas-SNP C17orf64 124773 hgsc.bcm.edu hg19 17 58508620 58508620 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C17orf64 NM_181707 exon6 c.A704G p.E235G AGACTGAACCGTA . 84.0 5.0 109.0 0.0 . 19 . . Atlas-SNP BCAS3 54828 hgsc.bcm.edu hg19 17 58756812 58756812 + Splice_Site SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . BCAS3 . . . . GGAAACAGGTTTT . 73.0 4.0 79.0 0.0 . 90 . . Atlas-SNP INTS2 57508 hgsc.bcm.edu hg19 17 59981858 59981858 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . INTS2 NM_020748 exon9 c.T1294C p.S432P AAAAGGAAAGTGA . 94.0 4.0 129.0 0.0 . 89 . . Atlas-SNP ACE 1636 hgsc.bcm.edu hg19 17 61560881 61560881 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ACE NM_000789 exon10 c.A1548G p.G516G TGCTGGAGCTAAG . 106.0 5.0 156.0 0.0 . 187 . . Atlas-SNP FTSJ3 117246 hgsc.bcm.edu hg19 17 61902423 61902423 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FTSJ3 NM_017647 exon8 c.T696C p.T232T CTTCTTAGTAACC . 86.0 5.0 98.0 0.0 . 63 . . Atlas-SNP SMARCD2 6603 hgsc.bcm.edu hg19 17 61914400 61914400 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SMARCD2 NM_001098426 exon4 c.G449A p.R150Q AGCTCCCGGATCT . 71.0 4.0 77.0 0.0 . 29 . . Atlas-SNP SCN4A 6329 hgsc.bcm.edu hg19 17 62022142 62022142 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b SCN4A,colon,carcinoma,0,1 SCN4A NM_000334 exon21 c.A3803G p.N1268S TAGAGGTTCACCT . 90.0 5.0 108.0 1.0 . 205 . . Atlas-SNP ABCA8 10351 hgsc.bcm.edu hg19 17 66873815 66873815 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ABCA8 NM_007168 exon31 c.A3924G p.L1308L TTTCAGTAGCACC . 62.0 4.0 95.0 0.0 . 213 . . Atlas-SNP ABCA8 10351 hgsc.bcm.edu hg19 17 66890418 66890418 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ABCA8 NM_007168 exon21 c.A2812G p.R938G TCAATCTTTTGGC . 80.0 4.0 71.0 0.0 . 213 . . Atlas-SNP ARMC7 79637 hgsc.bcm.edu hg19 17 73124841 73124841 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b .,1 ARMC7 NM_024585 exon3 c.T305C p.L102P TCCCACTCATCAT . 119.0 6.0 122.0 1.0 . 14 . . Atlas-SNP ENGASE 64772 hgsc.bcm.edu hg19 17 77075681 77075681 + Missense_Mutation SNP G G C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ENGASE NM_001042573 exon4 c.G527C p.W176S TGGGCTGGACCAA . 124.0 52.0 123.0 0.0 . 55 . . Atlas-SNP SLC38A10 124565 hgsc.bcm.edu hg19 17 79234066 79234066 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLC38A10 NM_001037984 exon11 c.G1260A p.L420L CTTCATCAAACCC . 50.0 17.0 63.0 0.0 . 133 . . Atlas-SNP TBCD 6904 hgsc.bcm.edu hg19 17 80828170 80828170 + Silent SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TBCD NM_005993 exon14 c.C1389A p.V463V CAACGTCAGGGAC . 97.0 6.0 90.0 0.0 . 94 . . Atlas-SNP SOGA2 23255 hgsc.bcm.edu hg19 18 8718463 8718463 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_015210 exon3 c.A15G p.R5R GATGAGAGACAGT . 93.0 4.0 125.0 0.0 . . . . Atlas-SNP PPP4R1 9989 hgsc.bcm.edu hg19 18 9593834 9593834 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PPP4R1 NM_001042388 exon4 c.A227G p.E76G CAGACTTCCCTCA . 91.0 4.0 89.0 0.0 . 63 . . Atlas-SNP GNAL 2774 hgsc.bcm.edu hg19 18 11862404 11862404 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GNAL NM_182978 exon6 c.A733G p.R245G CTGGAAAGAATCG . 76.0 6.0 88.0 0.0 . 59 . . Atlas-SNP GREB1L 80000 hgsc.bcm.edu hg19 18 19095396 19095396 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GREB1L NM_001142966 exon29 c.A4920G p.G1640G AGTAGGAGTTTCC . 66.0 4.0 79.0 0.0 . 69 . . Atlas-SNP GREB1L 80000 hgsc.bcm.edu hg19 18 19100757 19100757 + Missense_Mutation SNP G G C rs373460361 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GREB1L NM_001142966 exon32 c.G5581C p.D1861H GGTGCTGATCTTA . 196.0 12.0 225.0 0.0 . 69 . . Atlas-SNP GREB1L 80000 hgsc.bcm.edu hg19 18 19100763 19100763 + Missense_Mutation SNP A A C rs201565664 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GREB1L NM_001142966 exon32 c.A5587C p.K1863Q GATCTTAAGAAAT . 174.0 12.0 198.0 0.0 . 69 . . Atlas-SNP TAF4B 6875 hgsc.bcm.edu hg19 18 23915177 23915177 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TAF4B NM_005640 exon13 c.A2298G p.L766L GAGATTAAAGCAG . 96.0 4.0 119.0 0.0 . 71 . . Atlas-SNP MEP1B 4225 hgsc.bcm.edu hg19 18 29790544 29790544 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MEP1B NM_005925 exon10 c.C1000A p.P334T CTGTACCCTAAAA . 58.0 25.0 82.0 0.0 . 54 . . Atlas-SNP C18orf54 162681 hgsc.bcm.edu hg19 18 51889221 51889221 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C18orf54 NM_173529 exon4 c.A670G p.K224E ATGAAAAAGGATG . 81.0 4.0 101.0 0.0 . 40 . . Atlas-SNP RNF152 220441 hgsc.bcm.edu hg19 18 59483299 59483299 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RNF152 NM_173557 exon2 c.T398C p.V133A ATGGTCACCACGG . 68.0 4.0 107.0 0.0 . 37 . . Atlas-SNP PHLPP1 23239 hgsc.bcm.edu hg19 18 60642674 60642674 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PHLPP1 NM_194449 exon16 c.T3800C p.L1267P CTGTCCTTTGTCA . 141.0 6.0 145.0 0.0 . 164 . . Atlas-SNP TSHZ1 10194 hgsc.bcm.edu hg19 18 72998514 72998514 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TSHZ1 NM_005786 exon2 c.A1017G p.K339K TCAGAAAGCAGCG . 66.0 5.0 97.0 0.0 . 104 . . Atlas-SNP C19orf21 126353 hgsc.bcm.edu hg19 19 758323 758323 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C19orf21 NM_173481 exon2 c.T1377C p.T459T TGCGACTTCACCA . 81.0 4.0 75.0 0.0 . 56 . . Atlas-SNP ABCA7 10347 hgsc.bcm.edu hg19 19 1043779 1043779 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ABCA7 NM_019112 exon10 c.A986G p.E329G TGTGGGAGATGCT . 62.0 8.0 76.0 0.0 . 174 . . Atlas-SNP KDM4B 23030 hgsc.bcm.edu hg19 19 5041177 5041177 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KDM4B NM_015015 exon5 c.A347G p.D116G ACTTTGATGACCT . 92.0 4.0 126.0 0.0 . 120 . . Atlas-SNP SAFB 6294 hgsc.bcm.edu hg19 19 5654111 5654111 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SAFB NM_002967 exon12 c.A1566G p.K522K CAGAAAAGATGAT . 66.0 4.0 91.0 0.0 . 74 . . Atlas-SNP VAV1 7409 hgsc.bcm.edu hg19 19 6853046 6853046 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . VAV1 NM_005428 exon25 c.T2288C p.F763S TGCAGTTCCCCTT . 95.0 5.0 107.0 0.0 . 140 . . Atlas-SNP INSR 3643 hgsc.bcm.edu hg19 19 7267868 7267868 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . INSR NM_000208 exon2 c.T140C p.L47S TCATGCAACCTAG . 68.0 4.0 69.0 0.0 . 265 . . Atlas-SNP PCP2 126006 hgsc.bcm.edu hg19 19 7696666 7696666 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PCP2 NM_174895 exon4 c.T320C p.L107P GGACTGAGGGTCC . 99.0 7.0 78.0 0.0 . 6 . . Atlas-SNP HNRNPM 4670 hgsc.bcm.edu hg19 19 8550522 8550522 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HNRNPM NM_005968 exon14 c.A1210G p.M404V GAGAGGATGGGTC . 74.0 4.0 62.0 0.0 . 61 . . Atlas-SNP ZNF699 374879 hgsc.bcm.edu hg19 19 9406618 9406618 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF699 NM_198535 exon5 c.T1462C p.S488P GGGATGAGGAACG . 94.0 4.0 136.0 0.0 . 67 . . Atlas-SNP PRKCSH 5589 hgsc.bcm.edu hg19 19 11560105 11560105 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PRKCSH NM_002743 exon17 c.A1465G p.T489A AAAGAGACCATGG . 89.0 5.0 72.0 0.0 . 55 . . Atlas-SNP ZNF844 284391 hgsc.bcm.edu hg19 19 12186579 12186579 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF844 NM_001136501 exon4 c.A644G p.H215R TTATACATGAACG . 92.0 4.0 138.0 0.0 . 69 . . Atlas-SNP CD97 976 hgsc.bcm.edu hg19 19 14516617 14516617 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CD97 NM_078481 exon14 c.C1687T p.L563L TGCCTGCTGCTGT . 85.0 4.0 107.0 0.0 . 86 . . Atlas-SNP SLC1A6 6511 hgsc.bcm.edu hg19 19 15067448 15067448 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLC1A6 NM_005071 exon6 c.G1009A p.G337S GCTGACCCCCCAG . 84.0 8.0 109.0 0.0 . 111 . . Atlas-SNP AKAP8 10270 hgsc.bcm.edu hg19 19 15472941 15472941 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AKAP8 NM_005858 exon10 c.A1282G p.K428E CGGTCTTGTCGGG . 74.0 4.0 77.0 0.0 . 68 . . Atlas-SNP RASAL3 64926 hgsc.bcm.edu hg19 19 15565287 15565287 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RASAL3 NM_022904 exon13 c.T2045C p.V682A ATGGCTACCTGGT . 128.0 6.0 130.0 0.0 . 49 . . Atlas-SNP RASAL3 64926 hgsc.bcm.edu hg19 19 15569377 15569377 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RASAL3 NM_022904 exon7 c.T752C p.L251P GGGTGCAGTGGCC . 95.0 6.0 113.0 0.0 . 49 . . Atlas-SNP SIN3B 23309 hgsc.bcm.edu hg19 19 16952755 16952755 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SIN3B NM_015260 exon4 c.C558A p.F186L GTCATTCCTGGAG . 143.0 6.0 168.0 0.0 . 90 . . Atlas-SNP OCEL1 79629 hgsc.bcm.edu hg19 19 17339715 17339715 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OCEL1 NM_024578 exon6 c.A776G p.E259G ACAGCGAGGGCTC . 19.0 4.0 22.0 0.0 . 20 . . Atlas-SNP TM6SF2 53345 hgsc.bcm.edu hg19 19 19381177 19381177 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TM6SF2 NM_001001524 exon3 c.T274C p.F92L CCATGAAGCCCAC . 90.0 4.0 102.0 0.0 . 39 . . Atlas-SNP CILP2 148113 hgsc.bcm.edu hg19 19 19650506 19650506 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CILP2 NM_153221 exon2 c.A83G p.E28G CCGAGGAGCCAAT . 99.0 4.0 105.0 0.0 . 84 . . Atlas-SNP ZNF506 440515 hgsc.bcm.edu hg19 19 19917871 19917871 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF506 NM_001099269 exon2 c.T10C p.L4L ATTGCAATGGTCC . 87.0 4.0 112.0 0.0 . 36 . . Atlas-SNP ZNF714 148206 hgsc.bcm.edu hg19 19 21299777 21299777 + Missense_Mutation SNP G G A rs111443257 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF714 NM_182515 exon5 c.G307A p.E103K GGTTATGAACTAA . 256.0 14.0 291.0 0.0 . 121 . . Atlas-SNP ZNF208 7757 hgsc.bcm.edu hg19 19 22154522 22154522 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b ZNF208_ENST00000428290,colon,carcinoma,0,3 ZNF208 NM_007153 exon4 c.G3314A p.R1105K TGAATTCTCTTAT . 92.0 7.0 63.0 0.0 . 817 . . Atlas-SNP ZNF676 163223 hgsc.bcm.edu hg19 19 22363103 22363103 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF676 NM_001001411 exon3 c.T1416C p.A472A CTCTGCAGCATGA . 73.0 4.0 93.0 0.0 . 146 . . Atlas-SNP CEBPA 1050 hgsc.bcm.edu hg19 19 33793069 33793069 + Silent SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CEBPA NM_004364 exon1 c.C252T p.H84H CCGGCTGTGCTGG . 74.0 4.0 66.0 0.0 . 986 . . Atlas-SNP HAMP 57817 hgsc.bcm.edu hg19 19 35775715 35775715 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HAMP NM_021175 exon2 c.A114G p.Q38Q GCTGCAACCCCAG . 81.0 4.0 98.0 0.0 . 14 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36221615 36221615 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b MLL4,NS,carcinoma,0,2 MLL4 NM_014727 exon26 c.C5284A p.R1762S TGCTCCCGTCTGT . 58.0 4.0 83.0 0.0 . 229 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36223465 36223465 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MLL4 NM_014727 exon28 c.A6015G p.E2005E CCAGGAAGAGATT . 77.0 7.0 91.0 0.0 . 229 . . Atlas-SNP SIRT2 22933 hgsc.bcm.edu hg19 19 39389044 39389044 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SIRT2 NM_012237 exon2 c.A38G p.Q13R CCTGCCTGGGTCT . 89.0 4.0 73.0 0.0 . 29 . . Atlas-SNP PAF1 54623 hgsc.bcm.edu hg19 19 39880716 39880716 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PAF1 NM_019088 exon3 c.C163A p.Q55K TGTTCTGGTCGAA . 79.0 4.0 90.0 0.0 . 43 . . Atlas-SNP MEGF8 1954 hgsc.bcm.edu hg19 19 42874933 42874933 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MEGF8 NM_001271938 exon40 c.A7086G p.K2362K GGAGAAATGCGAG . 80.0 4.0 66.0 0.0 . 358 . . Atlas-SNP TEX101 83639 hgsc.bcm.edu hg19 19 43920080 43920080 + Silent SNP C C T rs149972012 bycluster TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TEX101 NM_031451 exon5 c.C63T p.T21T GGGAACCCCTCGT . 158.0 70.0 192.0 0.0 . 28 . C|1.000;T|0.000 Atlas-SNP ZNF223 7766 hgsc.bcm.edu hg19 19 44571110 44571110 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF223 NM_013361 exon5 c.T1129C p.C377R GACAAGTGTGGGA . 86.0 4.0 142.0 0.0 . 61 . . Atlas-SNP ZNF180 7733 hgsc.bcm.edu hg19 19 44983588 44983588 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF180 NM_013256 exon4 c.A246G p.T82T CTCCCGTGTGAAG . 92.0 4.0 133.0 0.0 . 103 . . Atlas-SNP CEACAM20 125931 hgsc.bcm.edu hg19 19 45015089 45015089 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CEACAM20 NM_001102597 exon12 c.A1736G p.E579G CATACCTCATAGA . 124.0 5.0 137.0 0.0 . 31 . . Atlas-SNP CLPTM1 1209 hgsc.bcm.edu hg19 19 45493763 45493763 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CLPTM1 NM_001294 exon10 c.A1243G p.T415A AACGAGACCAACT . 123.0 5.0 131.0 0.0 . 109 . . Atlas-SNP TPRX1 284355 hgsc.bcm.edu hg19 19 48305720 48305720 + Missense_Mutation SNP T T A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b TPRX1,NS,carcinoma,0,1 TPRX1 NM_198479 exon2 c.A548T p.N183I CCTGGGTTTGGGC . 67.0 7.0 89.0 2.0 . 46 . . Atlas-SNP LMTK3 114783 hgsc.bcm.edu hg19 19 49001397 49001397 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LMTK3 NM_001080434 exon12 c.G3016A p.G1006R GCTCCCCATTCTC . 122.0 5.0 160.0 0.0 . 125 . . Atlas-SNP VSTM1 284415 hgsc.bcm.edu hg19 19 54545427 54545427 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . VSTM1 NM_198481 exon6 c.A511G p.K171E ACCTCTTGGTGGA . 92.0 4.0 123.0 0.0 . 30 . . Atlas-SNP EPS8L1 54869 hgsc.bcm.edu hg19 19 55597306 55597306 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EPS8L1 NM_133180 exon15 c.A1483G p.S495G AACAGCAGTGAGC . 100.0 4.0 68.0 0.0 . 122 . . Atlas-SNP PTPRH 5794 hgsc.bcm.edu hg19 19 55697237 55697237 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PTPRH NM_002842 exon17 c.T2894C p.L965P TGGAGGAGCAGCA . 88.0 5.0 100.0 0.0 . 139 . . Atlas-SNP ZNF470 388566 hgsc.bcm.edu hg19 19 57088312 57088312 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF470 NM_001001668 exon6 c.A515G p.D172G AAAGAGATCACTC . 132.0 6.0 156.0 0.0 . 103 . . Atlas-SNP ZIM2 23619 hgsc.bcm.edu hg19 19 57286250 57286250 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZIM2 NM_015363 exon11 c.A1390G p.R464G AGGCTCTCTCTCC . 79.0 4.0 86.0 0.0 . 511 . . Atlas-SNP ZNF543 125919 hgsc.bcm.edu hg19 19 57839824 57839824 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF543 NM_213598 exon4 c.A994G p.I332V TACATCATCCACA . 67.0 4.0 98.0 0.0 . 61 . . Atlas-SNP A1BG 1 hgsc.bcm.edu hg19 19 58863849 58863849 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . A1BG NM_130786 exon4 c.T413C p.V138A CGGCACACTGCTG . 78.0 4.0 67.0 0.0 . 40 . . Atlas-SNP CHGB 1114 hgsc.bcm.edu hg19 20 5903053 5903053 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CHGB NM_001819 exon4 c.A263G p.D88G TAAGAGACCCAGC . 116.0 5.0 121.0 0.0 . 112 . . Atlas-SNP SPTLC3 55304 hgsc.bcm.edu hg19 20 13071736 13071736 + Missense_Mutation SNP T T A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SPTLC3 NM_018327 exon5 c.T613A p.L205M GGCACCTTGGATA . 158.0 53.0 201.0 0.0 . 78 . . Atlas-SNP MACROD2 140733 hgsc.bcm.edu hg19 20 15967784 15967784 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MACROD2 NM_080676 exon15 c.A1134G p.E378E CCAAGAAGAAAAA . 78.0 4.0 91.0 0.0 . 34 . . Atlas-SNP GZF1 64412 hgsc.bcm.edu hg19 20 23345920 23345920 + Silent SNP A A G rs146870841 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b .,1 GZF1 NM_022482 exon1 c.A900G p.E300E GGAGGAAGAGGAG . 74.0 3.0 69.0 0.0 . 61 . A|1.000;G|0.000 Atlas-SNP KIAA1755 85449 hgsc.bcm.edu hg19 20 36851965 36851965 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA1755 NM_001029864 exon9 c.A2243G p.K748R TCGGCCTTCTCGA . 82.0 4.0 94.0 0.0 . 145 . . Atlas-SNP SLC12A5 57468 hgsc.bcm.edu hg19 20 44685068 44685068 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SLC12A5 NM_001134771 exon23 c.A3044G p.E1015G GGGAGGAGCCTGA . 87.0 4.0 80.0 0.0 . 181 . . Atlas-SNP STAU1 6780 hgsc.bcm.edu hg19 20 47734536 47734536 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . STAU1 NM_017453 exon11 c.A1287G p.G429G ACTAACTCCTACA . 86.0 5.0 113.0 0.0 . 54 . . Atlas-SNP TSHZ2 128553 hgsc.bcm.edu hg19 20 51872705 51872705 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TSHZ2 NM_173485 exon2 c.T2708C p.V903A CCAACGTCAAGTA . 108.0 5.0 136.0 0.0 . 209 . . Atlas-SNP CASS4 57091 hgsc.bcm.edu hg19 20 55025710 55025710 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CASS4 NM_020356 exon4 c.T617C p.L206P CAGGACTCCATCC . 91.0 5.0 120.0 0.0 . 121 . . Atlas-SNP EDN3 1908 hgsc.bcm.edu hg19 20 57896094 57896094 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EDN3 NM_207034 exon3 c.T388C p.S130P GGACTGTCCAACT . 95.0 4.0 118.0 0.0 . 83 . . Atlas-SNP COL9A3 1299 hgsc.bcm.edu hg19 20 61460123 61460123 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b COL9A3,right_lower_lobe,carcinoma,0,1 COL9A3 NM_001853 exon18 c.C908T p.P303L GCATGCCGGGCAA . 56.0 4.0 59.0 0.0 . 70 . . Atlas-SNP YTHDF1 54915 hgsc.bcm.edu hg19 20 61835049 61835049 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . YTHDF1 NM_017798 exon4 c.T243C p.P81P AATCGGAGGGTCC . 102.0 5.0 124.0 0.0 . 66 . . Atlas-SNP OPRL1 4987 hgsc.bcm.edu hg19 20 62729930 62729930 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . OPRL1 NM_000913 exon4 c.C891T p.A297A GACTGCCGTGGCC . 96.0 38.0 104.0 0.0 . 47 . . Atlas-SNP CXADR 1525 hgsc.bcm.edu hg19 21 18933790 18933790 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CXADR NM_001207066 exon6 c.A829G p.I277V CACGATATCAGGT . 179.0 11.0 240.0 0.0 . 44 . . Atlas-SNP KRTAP26-1 388818 hgsc.bcm.edu hg19 21 31692292 31692292 + Missense_Mutation SNP T T G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KRTAP26-1 NM_203405 exon1 c.A62C p.H21P GGAATATGGCGGG . 109.0 16.0 136.0 0.0 . 58 . . Atlas-SNP KRTAP27-1 643812 hgsc.bcm.edu hg19 21 31709981 31709981 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KRTAP27-1 NM_001077711 exon1 c.T6C p.P2P GCTATGAGGCATA . 132.0 7.0 214.0 0.0 . 53 . . Atlas-SNP C21orf62 56245 hgsc.bcm.edu hg19 21 34166650 34166650 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C21orf62 NM_001162495 exon4 c.A83G p.K28R CTGTTCTTCTGAC . 98.0 5.0 140.0 0.0 . 26 . . Atlas-SNP DONSON 29980 hgsc.bcm.edu hg19 21 34957031 34957031 + Missense_Mutation SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DONSON NM_017613 exon4 c.G650T p.S217I ATAAGGCTCTGCT . 100.0 4.0 134.0 0.0 . 34 . . Atlas-SNP HLCS 3141 hgsc.bcm.edu hg19 21 38309237 38309237 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HLCS NM_000411 exon5 c.T508C p.S170P AGTCGGAGCCCAC . 95.0 4.0 157.0 0.0 . 64 . . Atlas-SNP TTC3 7267 hgsc.bcm.edu hg19 21 38573864 38573864 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TTC3 NM_001001894 exon46 c.T6067C p.S2023P TCCTGCTCTTCTA . 74.0 4.0 86.0 0.0 . 182 . . Atlas-SNP ETS2 2114 hgsc.bcm.edu hg19 21 40191431 40191431 + Silent SNP T T C rs457705 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b ETS2_ENST00000360214,NS,carcinoma,0,2 ETS2 NM_001256295 exon9 c.T1236C p.T412T AGGGACTCCCAAA . 39.0 3.0 72.0 1.0 . 87 . T|0.298;G|0.702 Atlas-SNP TMPRSS3 64699 hgsc.bcm.edu hg19 21 43808513 43808513 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TMPRSS3 NM_001256317 exon5 c.A445G p.S149G CTTACCTTGGGAA . 94.0 4.0 153.0 0.0 . 40 . . Atlas-SNP PDE9A 5152 hgsc.bcm.edu hg19 21 44174131 44174131 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PDE9A NM_002606 exon10 c.T767C p.L256P AGGCCCTGCGGAA . 52.0 4.0 49.0 0.0 . 69 . . Atlas-SNP PKNOX1 5316 hgsc.bcm.edu hg19 21 44430256 44430256 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PKNOX1 NM_004571 exon4 c.A273G p.V91V TGATGTAGACATC . 53.0 4.0 66.0 0.0 . 40 . . Atlas-SNP SIK1 150094 hgsc.bcm.edu hg19 21 44838374 44838374 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SIK1 NM_173354 exon12 c.A1510G p.S504G CAGAGCTGGTTCC . 69.0 5.0 85.0 0.0 . 65 . . Atlas-SNP C21orf2 755 hgsc.bcm.edu hg19 21 45755646 45755646 + Silent SNP C C A rs146104157 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C21orf2 NM_004928 exon3 c.G138T p.T46T CCTGAGCGTGATC . 100.0 4.0 139.0 0.0 . 10 . C|0.997;T|0.003 Atlas-SNP TRPM2 7226 hgsc.bcm.edu hg19 21 45833912 45833912 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TRPM2 NM_003307 exon20 c.T3101C p.L1034P ACCTGCTCTTCAC . 52.0 4.0 75.0 0.0 . 196 . . Atlas-SNP PCNT 5116 hgsc.bcm.edu hg19 21 47786943 47786943 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PCNT NM_006031 exon15 c.A3054G p.K1018K GGAGAAACTGAAG . 77.0 4.0 94.0 0.0 . 283 . . Atlas-SNP CDC45 8318 hgsc.bcm.edu hg19 22 19502321 19502321 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CDC45 NM_001178010 exon15 c.C1363T p.L455L AAGCAGCTGCGAG . 59.0 4.0 74.0 0.0 . 48 . . Atlas-SNP ZNF74 7625 hgsc.bcm.edu hg19 22 20755034 20755034 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF74 NM_003426 exon3 c.A233G p.N78S ACCAGAACCTTCT . 123.0 5.0 157.0 0.0 . 54 . . Atlas-SNP CCDC116 164592 hgsc.bcm.edu hg19 22 21990761 21990761 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCDC116 NM_152612 exon5 c.T1244C p.L415P AGCCGCTGCCCTC . 68.0 4.0 94.0 0.0 . 56 . . Atlas-SNP SEZ6L 23544 hgsc.bcm.edu hg19 22 26771552 26771552 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SEZ6L NM_021115 exon15 c.G2839T p.A947S GAAGCGGCAGCAG . 64.0 26.0 114.0 0.0 . 174 . . Atlas-SNP THOC5 8563 hgsc.bcm.edu hg19 22 29917065 29917065 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . THOC5 NM_001002878 exon14 c.T1199C p.V400A CTCAGGACTGAGT . 93.0 4.0 92.0 0.0 . 58 . . Atlas-SNP UQCR10 29796 hgsc.bcm.edu hg19 22 30165668 30165668 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . UQCR10 NM_013387 exon2 c.A152G p.K51R TGCAGAAGCTGTG . 134.0 6.0 154.0 0.0 . 10 . . Atlas-SNP PES1 23481 hgsc.bcm.edu hg19 22 30975865 30975865 + Silent SNP G G T rs140808409 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PES1 NM_014303 exon12 c.C1227A p.P409P TGCCACGGGGAGA . 81.0 6.0 79.0 0.0 . 55 . G|0.980;A|0.020 Atlas-SNP SMTN 6525 hgsc.bcm.edu hg19 22 31487265 31487265 + Missense_Mutation SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b SMTN_ENST00000404496,NS,carcinoma,+1,1 SMTN NM_001207018 exon9 c.G1424T p.R475L GGGGGCGGGGCTT . 37.0 2.0 37.0 0.0 . 219 . . Atlas-SNP PRR14L 253143 hgsc.bcm.edu hg19 22 32109192 32109192 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PRR14L NM_173566 exon4 c.A4633G p.R1545G AACTTCTGATTTT . 85.0 4.0 92.0 0.0 . 198 . . Atlas-SNP C22orf28 51493 hgsc.bcm.edu hg19 22 32795593 32795593 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . C22orf28 NM_014306 exon6 c.T651C p.P217P TACCTGAGGAAGG . 124.0 5.0 129.0 0.0 . 43 . . Atlas-SNP HMGXB4 10042 hgsc.bcm.edu hg19 22 35661108 35661108 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . HMGXB4 NM_001003681 exon5 c.A727G p.S243G TTACAGAGCTTTC . 132.0 16.0 142.0 0.0 . 52 . . Atlas-SNP APOL3 80833 hgsc.bcm.edu hg19 22 36537572 36537572 + Silent SNP G G T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . APOL3 NM_145640 exon3 c.C885A p.I295I GGCACGGATTTCA . 83.0 4.0 91.0 0.0 . 60 . . Atlas-SNP CSF2RB 1439 hgsc.bcm.edu hg19 22 37334252 37334252 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CSF2RB NM_000395 exon14 c.C2402T p.A801V GCCCGGCAGATGT . 51.0 4.0 54.0 0.0 . 104 . . Atlas-SNP CARD10 29775 hgsc.bcm.edu hg19 22 37888763 37888763 + Silent SNP C C A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CARD10 NM_014550 exon17 c.G2523T p.L841L AGACACCAGTAGC . 92.0 5.0 108.0 0.0 . 55 . . Atlas-SNP FAM83F 113828 hgsc.bcm.edu hg19 22 40415308 40415308 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FAM83F NM_138435 exon2 c.A626G p.Q209R TGTGTCAGGACCT . 116.0 5.0 114.0 0.0 . 29 . . Atlas-SNP EP300 2033 hgsc.bcm.edu hg19 22 41513713 41513713 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . EP300 NM_001429 exon2 c.A617G p.Q206R ATATGCAGTACCC . 73.0 5.0 115.0 0.0 . 367 . . Atlas-SNP ACO2 50 hgsc.bcm.edu hg19 22 41913597 41913597 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ACO2 NM_001098 exon7 c.A902G p.H301R ACAACCACAGGAT . 78.0 4.0 77.0 0.0 . 58 . . Atlas-SNP SHANK3 85358 hgsc.bcm.edu hg19 22 51160246 51160246 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SHANK3 NM_033517 exon21 c.T3943C p.S1315P GGCCCCTCGCCCA . 23.0 4.0 53.0 0.0 . 96 . . Atlas-SNP AKAP17A 8227 hgsc.bcm.edu hg19 X 1712975 1712975 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AKAP17A NM_005088 exon2 c.T620C p.F207S ACACCTTCAGTTT . 93.0 4.0 87.0 0.0 . 46 . . Atlas-SNP ARSH 347527 hgsc.bcm.edu hg19 X 2928166 2928166 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ARSH NM_001011719 exon2 c.T188C p.L63P CCTTCCTGACCGG . 106.0 5.0 124.0 0.0 . 72 . . Atlas-SNP GPR143 4935 hgsc.bcm.edu hg19 X 9711666 9711666 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GPR143 NM_000273 exon6 c.A706G p.R236G TCCTCCTCTCGTT . 70.0 4.0 67.0 0.0 . 37 . . Atlas-SNP TLR8 51311 hgsc.bcm.edu hg19 X 12938298 12938298 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TLR8 NM_138636 exon2 c.A1139G p.Q380R TGTTCCAGGAACT . 59.0 4.0 63.0 0.0 . 134 . . Atlas-SNP PIR 8544 hgsc.bcm.edu hg19 X 15477841 15477841 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PIR NM_001018109 exon4 c.G212A p.G71D ATGCTGCCCCCTT . 84.0 4.0 112.0 0.0 . 22 . . Atlas-SNP PDK3 5165 hgsc.bcm.edu hg19 X 24521601 24521601 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PDK3 NM_005391 exon4 c.T478C p.S160P CGCATCTCTTTCC . 98.0 4.0 115.0 0.0 . 86 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32366626 32366626 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DMD NM_004006 exon38 c.A5345G p.E1782G TCCAATTCCTTCA . 74.0 5.0 106.0 0.0 . 2127 . . Atlas-SNP SYN1 6853 hgsc.bcm.edu hg19 X 47464463 47464463 + Missense_Mutation SNP C C T rs143341539 TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . SYN1 NM_006950 exon5 c.G688A p.A230T TCTGGGCAAACTA . 95.0 4.0 114.0 0.0 . 84 . C|1.000;T|0.000 Atlas-SNP ZNF182 7569 hgsc.bcm.edu hg19 X 47842408 47842408 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZNF182 NM_006962 exon6 c.T230C p.L77P AACTTGAGGATGA . 75.0 4.0 81.0 0.0 . 117 . . Atlas-SNP WDR13 64743 hgsc.bcm.edu hg19 X 48458002 48458002 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . WDR13 NM_017883 exon4 c.A420G p.S140S CACGTCAGCAGCA . 84.0 4.0 92.0 0.0 . 96 . . Atlas-SNP USP27X 389856 hgsc.bcm.edu hg19 X 49644929 49644929 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . USP27X NM_001145073 exon1 c.T19C p.Y7H TATGTATATGACA . 56.0 4.0 92.0 0.0 . 25 . . Atlas-SNP CCNB3 85417 hgsc.bcm.edu hg19 X 50053332 50053332 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CCNB3 NM_033031 exon5 c.A2163G p.E721E GGAAGAAGAGTCC . 177.0 8.0 194.0 0.0 . 367 . . Atlas-SNP KDM5C 8242 hgsc.bcm.edu hg19 X 53223019 53223019 + Silent SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KDM5C NM_004187 exon24 c.G4053A p.L1351L ATTCTCCAGTAAG . 79.0 4.0 93.0 0.0 . 385 . . Atlas-SNP PHF8 23133 hgsc.bcm.edu hg19 X 54011486 54011486 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . PHF8 NM_001184896 exon18 c.T2412C p.S804S AGCAGGACTGTTA . 46.0 4.0 52.0 0.0 . 198 . . Atlas-SNP ITIH6 347365 hgsc.bcm.edu hg19 X 54786268 54786268 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_198510 exon7 c.A996G p.K332K TCCAGCTTTCCAA . 93.0 4.0 119.0 0.0 . . . . Atlas-SNP ZC3H12B 340554 hgsc.bcm.edu hg19 X 64709115 64709115 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZC3H12B NM_001010888 exon1 c.T434C p.L145P CAGAGCTTGTCAG . 74.0 4.0 78.0 0.0 . 144 . . Atlas-SNP FOXO4 4303 hgsc.bcm.edu hg19 X 70320733 70320733 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . FOXO4 NM_005938 exon2 c.T653C p.V218A CATCTGTGCTGCC . 39.0 4.0 33.0 0.0 . 60 . . Atlas-SNP TAF1 6872 hgsc.bcm.edu hg19 X 70601683 70601683 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . TAF1 NM_004606 exon9 c.A1511G p.N504S AGGACAATATCAT . 70.0 4.0 110.0 0.0 . 439 . . Atlas-SNP RGAG4 340526 hgsc.bcm.edu hg19 X 71349868 71349868 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . RGAG4 NM_001024455 exon1 c.A1523G p.N508S TTCTGGTTCCTCC . 122.0 5.0 140.0 0.0 . 63 . . Atlas-SNP DACH2 117154 hgsc.bcm.edu hg19 X 86069720 86069720 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . DACH2 NM_053281 exon10 c.A1567G p.K523E AAGGAGAAAAAAA . 46.0 4.0 41.0 0.0 . 263 . . Atlas-SNP NXF3 56000 hgsc.bcm.edu hg19 X 102339711 102339711 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NXF3 NM_022052 exon2 c.T129C p.S43S GGATGAAGAATGC . 113.0 5.0 130.0 0.0 . 81 . . Atlas-SNP SLC25A53 401612 hgsc.bcm.edu hg19 X 103349276 103349276 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . NM_001012755 exon2 c.G665A p.G222E ATTGTTCCATTGA . 82.0 5.0 107.0 0.0 . . . . Atlas-SNP GUCY2F 2986 hgsc.bcm.edu hg19 X 108628445 108628445 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GUCY2F NM_001522 exon16 c.A3023G p.N1008S GCTGTGTTCACAG . 99.0 4.0 97.0 0.0 . 178 . . Atlas-SNP AMOT 154796 hgsc.bcm.edu hg19 X 112021881 112021881 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AMOT NM_001113490 exon11 c.T3169C p.F1057L AGTGGAACACAGG . 79.0 4.0 89.0 0.0 . 204 . . Atlas-SNP KLHL13 90293 hgsc.bcm.edu hg19 X 117079481 117079481 + Missense_Mutation SNP C C T novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KLHL13 NM_001168299 exon3 c.G165A p.M55I GAGGCCCATTTCG . 97.0 4.0 126.0 0.0 . 87 . . Atlas-SNP KIAA1210 57481 hgsc.bcm.edu hg19 X 118284386 118284386 + Missense_Mutation SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . KIAA1210 NM_020721 exon1 c.A157G p.T53A TGTAAGTCAACCA . 87.0 5.0 88.0 0.0 . 171 . . Atlas-SNP ZDHHC9 51114 hgsc.bcm.edu hg19 X 128975901 128975901 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . ZDHHC9 NM_001008222 exon2 c.A21G p.R7R CTTCTTTCTCACC . 103.0 6.0 112.0 0.0 . 41 . . Atlas-SNP CXorf48 54967 hgsc.bcm.edu hg19 X 134292208 134292208 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . CXorf48 NM_017863 exon4 c.A453G p.L151L AACTTCTAACAAG . 98.0 4.0 97.0 0.0 . 17 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135430116 135430116 + Silent SNP T T C novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . GPR112 NM_153834 exon6 c.T4251C p.D1417D TGTAGATACCACA . 86.0 4.0 106.0 0.0 . 459 . . Atlas-SNP AFF2 2334 hgsc.bcm.edu hg19 X 148069086 148069086 + Silent SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . AFF2 NM_002025 exon20 c.A3813G p.K1271K AAACAAAGGTATG . 97.0 4.0 124.0 0.0 . 679 . . Atlas-SNP MTMR1 8776 hgsc.bcm.edu hg19 X 149905886 149905886 + Missense_Mutation SNP A A G novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . MTMR1 NM_003828 exon11 c.A1415G p.K472R TAGAAAAGGAGTG . 88.0 4.0 103.0 0.0 . 82 . . Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3745 3745 + Missense_Mutation SNP G G A novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . . ENST00000361390 exon1 c.G439A p.A147T ACCCTAGCCATCA . 244.0 15.0 179.0 0.0 . . . . Atlas-SNP LRRC8A 56262 hgsc.bcm.edu hg19 9 131670854 131670855 + Frame_Shift_Del DEL CT CT - novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . LRRC8A NM_001127244 exon3 c.1410_1411del p.470_471del . . 40.0 11.0 68.0 0.0 . 69 . . Atlas-INDEL NCAM1 4684 hgsc.bcm.edu hg19 11 112832332 112832363 + Frame_Shift_Del DEL CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC - novel TCGA-DD-A119-01A-11D-A12Z-10 TCGA-DD-A119-10A-01D-A12Z-10 CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 754b7a64-4a00-4461-a2e6-938ef1365f5d 91043a26-f026-4f25-86a7-7c7ab718c95b . NCAM1 NM_001242607 wholegene . . . . 32.0 32.0 1.0 1.0 . 372 . . Pindel